RID: B1JB2G3A013 Job Title:Protein Sequence Program: BLASTP Query: None ID: lcl|Query_57599(amino acid) Length: 540 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sindbis virus NA 11034 1136 1136 100% 0.0 100.00 2513 P03317.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Ockelbo virus NA 31699 1111 1111 100% 0.0 97.96 2515 P27283.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Aura virus NA 44158 858 858 100% 0.0 75.74 2499 Q86924.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Getah virus NA 59300 723 723 99% 0.0 64.37 2467 Q5Y389.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sagiyama virus NA 59303 723 723 99% 0.0 64.37 2467 Q9JGL0.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Semliki Fore... NA 11033 722 722 99% 0.0 63.62 2432 P08411.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Ross river v... NA 11031 717 717 99% 0.0 64.11 2480 P13887.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... O'nyong-nyon... NA 374989 704 704 99% 0.0 62.27 2513 O90368.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... O'nyong-nyon... NA 11028 703 703 99% 0.0 62.64 2514 P13886.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Igbo Ora virus NA 79899 699 699 99% 0.0 62.08 2513 O90370.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Chikungunya ... NA 371095 690 690 99% 0.0 62.50 2474 Q5XXP4.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Mayaro virus... NA 374990 687 687 88% 0.0 64.64 2437 Q8QZ73.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Barmah Fores... NA 11020 685 685 95% 0.0 61.51 2411 P87515.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Chikungunya ... NA 371094 679 679 99% 0.0 60.07 2474 Q8JUX6.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36385 674 674 95% 0.0 60.69 2493 P36328.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 11038 674 674 95% 0.0 60.89 2493 P27282.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36382 672 672 95% 0.0 60.50 2485 P36327.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36384 660 660 98% 0.0 58.85 2499 Q9WJC7.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374596 657 657 98% 0.0 60.52 2471 Q306W6.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 376610 657 657 98% 0.0 58.66 2497 Q8V294.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Western equi... NA 11039 654 654 87% 0.0 63.87 2467 P13896.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374597 652 652 98% 0.0 60.34 2474 Q306W8.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374598 649 649 98% 0.0 59.96 2494 Q4QXJ8.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Salmon pancr... NA 84589 424 424 95% 8e-131 44.30 2601 Q8JJX1.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sleeping dis... NA 78540 422 422 95% 3e-130 44.11 2593 Q8QL53.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Pepper mild ... NA 138663 43.5 43.5 15% 0.004 29.35 1612 P89657.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Pepper mild ... NA 31745 43.5 43.5 15% 0.004 29.35 1612 P29098.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Obuda pepper... NA 31749 36.6 36.6 19% 0.61 21.62 1616 P90211.1 RecName: Full=Threonine--tRNA ligase; AltName:... Pseudomonas ... NA 379731 36.6 36.6 40% 0.65 24.58 640 A4VM22.1 RecName: Full=Replicase large subunit; AltName:... Potato mop-t... NA 652839 36.6 36.6 14% 0.67 29.11 1812 Q9QBU0.3 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mild... NA 12241 36.2 36.2 18% 0.99 23.85 1609 P18339.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tomato brown... NA 2654645 35.4 35.4 25% 1.4 23.13 1615 A0A0S2T050.1 RecName: Full=Threonine--tRNA ligase; AltName:... Legionella p... NA 272624 35.0 35.0 30% 2.0 26.82 637 Q5ZS05.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tomato mosai... NA 138314 35.0 35.0 15% 2.2 24.72 1616 Q9YKD6.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tomato mosai... NA 138312 34.7 34.7 15% 2.4 24.72 1616 P89676.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tomato mosai... NA 138311 34.7 34.7 15% 2.4 24.72 1616 Q9Q1T8.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mosa... NA 12252 34.7 34.7 15% 2.4 24.72 1616 P03587.2 RecName: Full=Alpha-A protein; Includes: RecName:... Barley strip... NA 12327 34.7 34.7 14% 2.5 26.58 1139 P17595.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mosa... NA 12243 34.3 34.3 16% 3.4 22.45 1616 P03586.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mosa... NA 31746 34.3 34.3 16% 3.5 22.45 1616 P30738.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mosa... NA 12251 34.3 34.3 16% 3.5 22.45 1616 O93058.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mosa... NA 138309 34.3 34.3 16% 3.7 22.45 1616 Q9YQ08.1 RecName: Full=Threonine--tRNA ligase; AltName:... Pseudomonas ... NA 390235 33.9 33.9 40% 3.9 23.40 640 B1J6U4.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Odontoglossu... NA 138662 34.3 34.3 17% 3.9 21.51 1612 Q84133.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Odontoglossu... NA 138661 34.3 34.3 17% 3.9 21.51 1612 P89659.2 RecName: Full=Threonine--tRNA ligase; AltName:... Pseudomonas ... NA 399739 33.9 33.9 23% 4.3 27.82 640 A4XTS1.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mosa... NA 138310 33.9 33.9 15% 4.3 23.60 1616 Q98745.1 RecName: Full=Threonine--tRNA ligase; AltName:... Legionella p... NA 400673 33.5 33.5 30% 5.1 25.14 637 A5IAK9.1 RecName: Full=Threonine--tRNA ligase; AltName:... Legionella p... NA 297245 33.5 33.5 25% 6.0 27.78 637 Q5WT82.1 RecName: Full=NADH dehydrogenase [ubiquinone] 1 alpha subcompl... Drosophila m... fruit fly 7227 33.1 33.1 22% 6.3 24.17 407 P91929.2 RecName: Full=Threonine--tRNA ligase; AltName:... Legionella p... NA 297246 33.1 33.1 25% 6.4 27.78 637 Q5X1H3.1 RecName: Full=Threonine--tRNA ligase; AltName:... Colwellia ps... NA 167879 33.1 33.1 16% 7.7 30.00 636 Q480A9.1 Alignments: >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; AltName: Full=p270 nonstructural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sindbis virus] Sequence ID: P03317.2 Length: 2513 Range 1: 1 to 540 Score:1136 bits(2938), Expect:0.0, Method:Compositional matrix adjust., Identities:540/540(100%), Positives:540/540(100%), Gaps:0/540(0%) Query 1 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTT 60 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTT Sbjct 1 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTT 60 Query 61 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD 120 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD Sbjct 61 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD 120 Query 121 LRTVLDTPDAETPSLCFHNDVTCNMRAEYSVMQDVYINAPGTIYHQAMKGVRTLYWIGFD 180 LRTVLDTPDAETPSLCFHNDVTCNMRAEYSVMQDVYINAPGTIYHQAMKGVRTLYWIGFD Sbjct 121 LRTVLDTPDAETPSLCFHNDVTCNMRAEYSVMQDVYINAPGTIYHQAMKGVRTLYWIGFD 180 Query 181 TTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRV 240 TTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRV Sbjct 181 TTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRV 240 Query 241 YFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITGE 300 YFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITGE Sbjct 241 YFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITGE 300 Query 301 TVGYAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLL 360 TVGYAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLL Sbjct 301 TVGYAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLL 360 Query 361 VGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYGC 420 VGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYGC Sbjct 361 VGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYGC 420 Query 421 LWAFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEEK 480 LWAFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEEK Sbjct 421 LWAFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEEK 480 Query 481 LLQVSEELVMEAKAAFEDAQEEARAEKLREALPPLVADKGIEAAAEVVCEVEGLQADIGA 540 LLQVSEELVMEAKAAFEDAQEEARAEKLREALPPLVADKGIEAAAEVVCEVEGLQADIGA Sbjct 481 LLQVSEELVMEAKAAFEDAQEEARAEKLREALPPLVADKGIEAAAEVVCEVEGLQADIGA 540 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ockelbo virus] Sequence ID: P27283.2 Length: 2515 Range 1: 1 to 540 Score:1111 bits(2874), Expect:0.0, Method:Compositional matrix adjust., Identities:529/540(98%), Positives:533/540(98%), Gaps:0/540(0%) Query 1 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTT 60 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQ TPNDHANARAFSHLASKLIELEVPTT Sbjct 1 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQATPNDHANARAFSHLASKLIELEVPTT 60 Query 61 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD 120 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD Sbjct 61 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD 120 Query 121 LRTVLDTPDAETPSLCFHNDVTCNMRAEYSVMQDVYINAPGTIYHQAMKGVRTLYWIGFD 180 LRTVLDTPDAETPSLCFHNDVTCN RAEYSVMQDVYINAPGTIYHQAMKGVRTLYWIGFD Sbjct 121 LRTVLDTPDAETPSLCFHNDVTCNTRAEYSVMQDVYINAPGTIYHQAMKGVRTLYWIGFD 180 Query 181 TTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRV 240 TTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRV Sbjct 181 TTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRV 240 Query 241 YFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITGE 300 YFSVGSTLYPEHRASLQSWHLPSVFHL GKQSYTCRCDTVVSCEGYVVKKITISPGITGE Sbjct 241 YFSVGSTLYPEHRASLQSWHLPSVFHLKGKQSYTCRCDTVVSCEGYVVKKITISPGITGE 300 Query 301 TVGYAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLL 360 TVGYAVT+NSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLL Sbjct 301 TVGYAVTNNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLL 360 Query 361 VGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYGC 420 VGLNQRIVING+TNRNTNTMQNYLLP IAQGFSKWAKERK+DLDNEKMLGTRERKLTYGC Sbjct 361 VGLNQRIVINGKTNRNTNTMQNYLLPTIAQGFSKWAKERKEDLDNEKMLGTRERKLTYGC 420 Query 421 LWAFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEEK 480 LWAFRTKKVHSFYRPPGTQT VKVPASFSAFPMSSVWTTSLPMSLRQK+KLALQPKKEEK Sbjct 421 LWAFRTKKVHSFYRPPGTQTSVKVPASFSAFPMSSVWTTSLPMSLRQKMKLALQPKKEEK 480 Query 481 LLQVSEELVMEAKAAFEDAQEEARAEKLREALPPLVADKGIEAAAEVVCEVEGLQADIGA 540 LLQV EELVMEAKAAFEDAQEEARAEKLREALPPLVADK IEAAAEVVCEVEGLQADIGA Sbjct 481 LLQVPEELVMEAKAAFEDAQEEARAEKLREALPPLVADKDIEAAAEVVCEVEGLQADIGA 540 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Aura virus] Sequence ID: Q86924.3 Length: 2499 Range 1: 1 to 539 Score:858 bits(2218), Expect:0.0, Method:Compositional matrix adjust., Identities:409/540(76%), Positives:462/540(85%), Gaps:1/540(0%) Query 1 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTT 60 MEKP V+VDVDPQSPFV+QLQKSFPQFE+VAQQVTPNDHANARAFSHLASKLIE E+PT+ Sbjct 1 MEKPTVHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPTS 60 Query 61 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD 120 TILDIGSAPARRM+SEH+YHCVCPMRSPEDPDR+M YAS+LA+KA +ITNK LH+K+ D Sbjct 61 VTILDIGSAPARRMYSEHKYHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLAD 120 Query 121 LRTVLDTPDAETPSLCFHNDVTCNMRAEYSVMQDVYINAPGTIYHQAMKGVRTLYWIGFD 180 L++VL++PDAET ++CFHNDV C AE SVMQ+VYINAP TIYHQA+KGVR LYWIGFD Sbjct 121 LKSVLESPDAETGTICFHNDVICRTTAEVSVMQNVYINAPSTIYHQALKGVRKLYWIGFD 180 Query 181 TTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRV 240 TTQFMFS+MAGSYP+YNTNWADE+VLEARNIGLCSTKL EG GKLS RKK LKPG+ V Sbjct 181 TTQFMFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTNV 240 Query 241 YFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITGE 300 YFSVGSTLYPE+RA LQSWHLPSVFHL GKQS+TCRCDT V+CEGYVVKKITISPGITG Sbjct 241 YFSVGSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGITGR 300 Query 301 TVGYAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLL 360 Y VT+NSEGFLLCK+TDTVKGERVSFPVCTYIP +ICDQMTGI+ATDI P+DAQKLL Sbjct 301 VNRYTVTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDAQKLL 360 Query 361 VGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYGC 420 VGLNQRIV+NG+TNRNTNTMQNYLLP +A G SKWAKERK D +EK L RERKL +GC Sbjct 361 VGLNQRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKLAFGC 420 Query 421 LWAFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEEK 480 LWAF+TKK+HSFYRPPGTQT VKV A FSAFPMSSVWTTSLPMSLRQK+KL L K + Sbjct 421 LWAFKTKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTTSLPMSLRQKVKLLLVKKTNKP 480 Query 481 LLQVSEELVMEAKAAFEDAQEEARAEKLREALPPLVADKGIEAAAEVVCEVEGLQADIGA 540 ++ +++ V A+ A+ +A E A AE+ +ALPPL A +V CEV L D GA Sbjct 481 VVTITDTAVKNAQEAYNEAVETAEAEEKAKALPPL-KPTAPPVAEDVKCEVTDLVDDAGA 539 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Getah virus] Sequence ID: Q5Y389.3 Length: 2467 Range 1: 3 to 534 Score:723 bits(1867), Expect:0.0, Method:Compositional matrix adjust., Identities:345/536(64%), Positives:424/536(79%), Gaps:5/536(0%) Query 6 VNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILD 65 V VDV+ SPF+ LQK+FP FEV +QQVTPNDHANARAFSHLA+KLIE EVPT TILD Sbjct 3 VTVDVEADSPFLKALQKAFPAFEVESQQVTPNDHANARAFSHLATKLIEQEVPTGVTILD 62 Query 66 IGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKDLRTVL 125 +GSAPARR+ S+H YHC+CPM+S EDP+R+ YA KLA+ + + +KN+ KI DL+ V+ Sbjct 63 VGSAPARRLMSDHTYHCICPMKSAEDPERLANYARKLAKASGTVLDKNVSGKITDLQDVM 122 Query 126 DTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGFDTTQF 184 TPD E+P+ C H D TC RAE +V QDVY ++AP ++YHQA+KGVRT YWIGFDTT F Sbjct 123 ATPDLESPTFCLHTDETCRTRAEVAVYQDVYAVHAPTSLYHQAIKGVRTAYWIGFDTTPF 182 Query 185 MFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRVYFSV 244 MF A+AG+YPAY+TNWADE+VL+ARNIGLC+T LSEGR GKLSIMRKK L+P RV FSV Sbjct 183 MFEALAGAYPAYSTNWADEQVLQARNIGLCATGLSEGRRGKLSIMRKKCLRPSDRVMFSV 242 Query 245 GSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITGETVGY 304 GSTLY E R L+SWHLPSVFHL GK S+TCRCDTVVSCEGYVVKKITISPGI G+TV Y Sbjct 243 GSTLYTESRKLLRSWHLPSVFHLKGKNSFTCRCDTVVSCEGYVVKKITISPGIYGKTVDY 302 Query 305 AVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLLVGLN 364 AVTH++EGFL+CK+TDTV+GERVSFPVCTY+PATICDQMTGI+ATD++P+DAQKLLVGLN Sbjct 303 AVTHHAEGFLMCKITDTVRGERVSFPVCTYVPATICDQMTGILATDVTPEDAQKLLVGLN 362 Query 365 QRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYGCLWAF 424 QRIV+NGRT RNTNTM+NYLLP++AQ FSKWA+E + D+++EK LGTRER LT CLWAF Sbjct 363 QRIVVNGRTQRNTNTMKNYLLPVVAQAFSKWAREARADMEDEKPLGTRERTLTCCCLWAF 422 Query 425 RTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEEKLLQV 484 ++ K+H+ Y+ P TQT VKVP++F +F + S+W++SL M +RQ++KL L + + L Sbjct 423 KSHKIHTMYKRPETQTIVKVPSTFDSFVIPSLWSSSLSMGIRQRIKLLLSARMAQGLPYS 482 Query 485 SEELVMEAKAAFEDAQEEARAEKLREALPPLVADKGIEAAAEVVCEVEGLQADIGA 540 + A E +EA R ALPPLV+ + A+V +VE L GA Sbjct 483 GDRTEARAAEEEEKEVQEAELT--RAALPPLVSGSCADDIAQV--DVEELTFRAGA 534 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sagiyama virus] Sequence ID: Q9JGL0.3 Length: 2467 Range 1: 3 to 534 Score:723 bits(1866), Expect:0.0, Method:Compositional matrix adjust., Identities:345/536(64%), Positives:424/536(79%), Gaps:5/536(0%) Query 6 VNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILD 65 V VDV+ SPF+ LQK+FP FEV +QQVTPNDHANARAFSHLA+KLIE EVPT TILD Sbjct 3 VTVDVEADSPFLKALQKAFPAFEVESQQVTPNDHANARAFSHLATKLIEQEVPTGVTILD 62 Query 66 IGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKDLRTVL 125 +GSAPARR+ S+H YHC+CPM+S EDP+R+ YA KLA+ + + +KN+ KI DL+ V+ Sbjct 63 VGSAPARRLMSDHTYHCICPMKSAEDPERLANYARKLAKASGTVLDKNVSGKITDLQDVM 122 Query 126 DTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGFDTTQF 184 TPD E+P+ C H D TC RAE +V QDVY ++AP ++YHQA+KGVRT YWIGFDTT F Sbjct 123 ATPDLESPTFCLHTDETCRTRAEVAVYQDVYAVHAPTSLYHQAIKGVRTAYWIGFDTTPF 182 Query 185 MFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRVYFSV 244 MF A+AG+YPAY+TNWADE+VL+ARNIGLC+T LSEGR GKLSIMRKK L+P RV FSV Sbjct 183 MFEALAGAYPAYSTNWADEQVLQARNIGLCATGLSEGRRGKLSIMRKKCLRPSDRVMFSV 242 Query 245 GSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITGETVGY 304 GSTLY E R L+SWHLPSVFHL GK S+TCRCDTVVSCEGYVVKKITISPGI G+TV Y Sbjct 243 GSTLYTESRKLLRSWHLPSVFHLKGKNSFTCRCDTVVSCEGYVVKKITISPGIYGKTVDY 302 Query 305 AVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLLVGLN 364 AVTH++EGFL+CK+TDTV+GERVSFPVCTY+PATICDQMTGI+ATD++P+DAQKLLVGLN Sbjct 303 AVTHHAEGFLVCKITDTVRGERVSFPVCTYVPATICDQMTGILATDVTPEDAQKLLVGLN 362 Query 365 QRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYGCLWAF 424 QRIV+NGRT RNTNTM+NYLLP++AQ FSKWA+E + D+++EK LGTRER LT CLWAF Sbjct 363 QRIVVNGRTQRNTNTMKNYLLPVVAQAFSKWAREARADMEDEKPLGTRERTLTCCCLWAF 422 Query 425 RTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEEKLLQV 484 ++ K+H+ Y+ P TQT VKVP++F +F + S+W++SL M +RQ++KL L + + L Sbjct 423 KSHKIHTMYKRPETQTIVKVPSTFDSFVIPSLWSSSLSMGIRQRIKLLLSARMAQGLPYS 482 Query 485 SEELVMEAKAAFEDAQEEARAEKLREALPPLVADKGIEAAAEVVCEVEGLQADIGA 540 + A E +EA R ALPPLV+ + A+V +VE L GA Sbjct 483 GDRTEARAAEEEEKEAQEAELT--RAALPPLVSGSCADDIAQV--DVEELTFRAGA 534 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Semliki Forest virus] Sequence ID: P08411.2 Length: 2432 Range 1: 5 to 537 Score:722 bits(1863), Expect:0.0, Method:Compositional matrix adjust., Identities:341/536(64%), Positives:422/536(78%), Gaps:4/536(0%) Query 6 VNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILD 65 V+VD++ SPF+ LQK+FP FEV + QVTPNDHANARAFSHLA+KLIE E ILD Sbjct 5 VHVDIEADSPFIKSLQKAFPSFEVESLQVTPNDHANARAFSHLATKLIEQETDKDTLILD 64 Query 66 IGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKDLRTVL 125 IGSAP+RRM S H+YHCVCPMRS EDP+R++ YA KLA + K+ ++ + KI DL+TV+ Sbjct 65 IGSAPSRRMMSTHKYHCVCPMRSAEDPERLVCYAKKLAAASGKVLDREIAGKITDLQTVM 124 Query 126 DTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGFDTTQF 184 TPDAE+P+ C H DVTC AE +V QDVY ++AP ++YHQAMKGVRT YWIGFDTT F Sbjct 125 ATPDAESPTFCLHTDVTCRTAAEVAVYQDVYAVHAPTSLYHQAMKGVRTAYWIGFDTTPF 184 Query 185 MFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRVYFSV 244 MF A+AG+YP Y TNWADE+VL+ARNIGLC+ L+EGR GKLSI+RKK+LKP V FSV Sbjct 185 MFDALAGAYPTYATNWADEQVLQARNIGLCAASLTEGRLGKLSILRKKQLKPCDTVMFSV 244 Query 245 GSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITGETVGY 304 GSTLY E R L+SWHLPSVFHL GKQS+TCRCDT+VSCEGYVVKKIT+ PG+ G+TVGY Sbjct 245 GSTLYTESRKLLRSWHLPSVFHLKGKQSFTCRCDTIVSCEGYVVKKITMCPGLYGKTVGY 304 Query 305 AVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLLVGLN 364 AVT+++EGFL+CK TDTVKGERVSFPVCTY+P+TICDQMTGI+ATD++P+DAQKLLVGLN Sbjct 305 AVTYHAEGFLVCKTTDTVKGERVSFPVCTYVPSTICDQMTGILATDVTPEDAQKLLVGLN 364 Query 365 QRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYGCLWAF 424 QRIV+NGRT RNTNTM+NYLLPI+A FSKWA+E K DLD+EK LG RER LT CLWAF Sbjct 365 QRIVVNGRTQRNTNTMKNYLLPIVAVAFSKWAREYKADLDDEKPLGVRERSLTCCCLWAF 424 Query 425 RTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEEKLLQV 484 +T+K+H+ Y+ P TQT VKVP+ F++F + S+W+T L + +R ++K+ L K + +L+ V Sbjct 425 KTRKMHTMYKKPDTQTIVKVPSEFNSFVIPSLWSTGLAIPVRSRIKMLLAKKTKRELIPV 484 Query 485 SEELVMEAKAAFEDAQEEARAEKLREALPPLVADKGIEAAAEVVCEVEGLQADIGA 540 + A+ A ++ +E AE REALPPLV E V +VE L+ GA Sbjct 485 LD--ASSARDAEQEEKERLEAELTREALPPLVPIAPAETGV-VDVDVEELEYHAGA 537 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ross river virus (STRAIN NB5092)] Sequence ID: P13887.2 Length: 2480 Range 1: 3 to 533 Score:717 bits(1852), Expect:0.0, Method:Compositional matrix adjust., Identities:343/535(64%), Positives:421/535(78%), Gaps:4/535(0%) Query 6 VNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILD 65 V VDV+ SPF+ LQK+FP FEV +QQVTPNDHANARAFSHLA+KLIE EVP TILD Sbjct 3 VTVDVEADSPFLKALQKAFPAFEVESQQVTPNDHANARAFSHLATKLIEQEVPANITILD 62 Query 66 IGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKDLRTVL 125 +GSAPARR+ S+H YHC+CPM+S EDP+R+ YA KLA+ A ++ +KN+ KI DL+ V+ Sbjct 63 VGSAPARRLMSDHSYHCICPMKSAEDPERLANYARKLAKTAGEVLDKNVSGKITDLQDVM 122 Query 126 DTPDAETPSLCFHNDVTCNMRAEYSVMQDVYINAPGTIYHQAMKGVRTLYWIGFDTTQFM 185 TPD E+P+ C H D TC RAE +V QDV +AP ++YHQAMKGVRT+YWIGFDTT FM Sbjct 123 ATPDLESPTFCLHTDETCRTRAEVAVYQDVXXHAPTSLYHQAMKGVRTVYWIGFDTTPFM 182 Query 186 FSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRVYFSVG 245 F +AG+YP Y+TNWADE+VL+ARNIGLC+T LSEG GK+SIMRKK L+P R FSVG Sbjct 183 FEVVAGAYPTYSTNWADEQVLQARNIGLCATSLSEGHRGKISIMRKKRLRPSDRXMFSVG 242 Query 246 STLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITGETVGYA 305 TLY E R L+SWHLPSVFHL GK S+TCRCDT+VSCEGYVVKKIT+SPG G+TVGYA Sbjct 243 XTLYIESRRLLKSWHLPSVFHLKGKNSFTCRCDTIVSCEGYVVKKITMSPGTYGKTVGYA 302 Query 306 VTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLLVGLNQ 365 VTH++EGFL+CKVTDTV+GERVSFPVCTY+PATICDQMTGI+ATD++P+DAQKLLVGLNQ Sbjct 303 VTHHAEGFLMCKVTDTVRGERVSFPVCTYVPATICDQMTGILATDVTPEDAQKLLVGLNQ 362 Query 366 RIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYGCLWAFR 425 RIV+NGRT RNTNTM+NYLLP++AQ FSKWA+E K D+++EK LGTRER LT CLWAF+ Sbjct 363 RIVVNGRTQRNTNTMKNYLLPVVAQAFSKWAREAKADMEDEKPLGTRERTLTCCCLWAFK 422 Query 426 TKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEEKLLQVS 485 K H+ Y+ P TQT VKVP++F +F + S+W++SL + +RQ++KL L PK L Sbjct 423 NHKTHTMYKRPDTQTIVKVPSTFDSFVIPSLWSSSLSIGIRQRIKLLLGPKLSRDLPYSG 482 Query 486 EELVMEAKAAFEDAQEEARAEKLREALPPLVADKGIEAAAEVVCEVEGLQADIGA 540 + EA+ A ++A+E AE REALPPLV + +V +VE L GA Sbjct 483 DR--NEAREAEKEAEETKEAELTREALPPLVGSNCADDVDQV--DVEELTYRAGA 533 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [O'nyong-nyong virus strain SG650] Sequence ID: O90368.1 Length: 2513 Range 1: 4 to 535 Score:704 bits(1816), Expect:0.0, Method:Compositional matrix adjust., Identities:335/538(62%), Positives:415/538(77%), Gaps:9/538(1%) Query 6 VNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILD 65 V VD+D S F+ LQ+++P FEV +QVTPNDHANARAFSHLA KLIE E+ +TILD Sbjct 4 VYVDIDADSAFLKALQRAYPMFEVEPKQVTPNDHANARAFSHLAIKLIEQEIDPDSTILD 63 Query 66 IGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKDLRTVL 125 IG APARRM S+ +YHCVCPMRS EDP+R+ YA KLA A K+T+KN+ KI DL+ V+ Sbjct 64 IGPAPARRMMSDRKYHCVCPMRSAEDPERLANYARKLASAAGKVTDKNISGKINDLQAVM 123 Query 126 DTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGFDTTQF 184 P+ ET + C H D TC R + ++ QDVY ++AP ++YHQA+KGVR YWIGFDTT F Sbjct 124 AVPNMETSTFCLHTDATCKQRGDVAIYQDVYAVHAPTSLYHQAIKGVRVAYWIGFDTTPF 183 Query 185 MFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRVYFSV 244 M++AMAG+YP+Y+TNWADE+VL+A+NIGLCST LSEGR GKLSIMR K+LKP RV FSV Sbjct 184 MYNAMAGAYPSYSTNWADEQVLKAKNIGLCSTDLSEGRRGKLSIMRGKKLKPCDRVLFSV 243 Query 245 GSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITGETVGY 304 GSTLYPE R LQSWHLPSVFHL GK S+TCRCDT+VSCEGYVVK++T+SPGI G+T GY Sbjct 244 GSTLYPESRKLLQSWHLPSVFHLKGKLSFTCRCDTIVSCEGYVVKRVTMSPGIYGKTSGY 303 Query 305 AVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLLVGLN 364 AVTH+++GFL+CK TDTV GERVSF VCTY+PATICDQMTGI+AT+++P+DAQKLLVGLN Sbjct 304 AVTHHADGFLMCKTTDTVDGERVSFSVCTYVPATICDQMTGILATEVTPEDAQKLLVGLN 363 Query 365 QRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYGCLWAF 424 QRIV+NGRT RNTNTM+NYLLPI+AQ FSKWAKE + D+++EK+LG RER LT CLWAF Sbjct 364 QRIVVNGRTQRNTNTMKNYLLPIVAQAFSKWAKECRKDMEDEKLLGVRERTLTCCCLWAF 423 Query 425 RTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLK--LALQPKKEEKLL 482 R K H+ Y+ P TQ+ KVPA F +F + S+W++ L + LR ++K L+ PK E+ Sbjct 424 RKHKTHTVYKRPDTQSIQKVPAEFDSFVIPSLWSSGLSIPLRTRIKWLLSKAPKHEQLPH 483 Query 483 QVSEELVMEAKAAFEDAQEEARAEKLREALPPLVADKGIEAAAEVVCEVEGLQADIGA 540 + E EA A DA EE AE REA+PPL + + +V +VE L+ GA Sbjct 484 SGNAE---EAAQAEMDAAEEREAELTREAMPPL---QATQDDVQVEIDVEQLEDRAGA 535 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [O'nyong-nyong virus strain Gulu] Sequence ID: P13886.2 Length: 2514 Range 1: 4 to 535 Score:703 bits(1815), Expect:0.0, Method:Compositional matrix adjust., Identities:337/538(63%), Positives:415/538(77%), Gaps:9/538(1%) Query 6 VNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILD 65 V VD+D S F+ LQ+++P FEV +QVTPNDHANARAFSHLA KLIE E+ +TILD Sbjct 4 VYVDIDADSAFLKALQQAYPMFEVEPKQVTPNDHANARAFSHLAIKLIEQEIDPDSTILD 63 Query 66 IGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKDLRTVL 125 IGSAPARRM S+ +YHCVCPMRS EDP+R+ YA KLA A K+T+KN+ KI DL+ V+ Sbjct 64 IGSAPARRMMSDRKYHCVCPMRSAEDPERLANYARKLASAAGKVTDKNISGKINDLQAVM 123 Query 126 DTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGFDTTQF 184 P+ ET + C H D TC R + ++ QDVY ++AP ++YHQA+KGVR YWIGFDTT F Sbjct 124 AVPNMETSTFCLHTDATCKQRGDVAIYQDVYAVHAPTSLYHQAIKGVRVAYWIGFDTTPF 183 Query 185 MFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRVYFSV 244 M++AMAG+YP+Y+TNWADE+VL+A+NIGLCST LSEGR GKLSIMR K+LKP RV FSV Sbjct 184 MYNAMAGAYPSYSTNWADEQVLKAKNIGLCSTDLSEGRRGKLSIMRGKKLKPCDRVLFSV 243 Query 245 GSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITGETVGY 304 GSTLYPE R LQSWHLPSVFHL GK S+TCRCDT+VSCEGYVVK++T+SPGI G+T GY Sbjct 244 GSTLYPESRKLLQSWHLPSVFHLKGKLSFTCRCDTIVSCEGYVVKRVTMSPGIYGKTSGY 303 Query 305 AVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLLVGLN 364 AVTH++ GFL+CK TDTV GERVSF VCTY+PATICDQMTGI+AT+++P+DAQKLLVGLN Sbjct 304 AVTHHAGGFLMCKTTDTVDGERVSFSVCTYVPATICDQMTGILATEVTPEDAQKLLVGLN 363 Query 365 QRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYGCLWAF 424 QRIV+NGRT RNTNTM+NYLLPI+AQ FSKWAKE + D+++EK+LG RER LT CLWAF Sbjct 364 QRIVVNGRTQRNTNTMKNYLLPIVAQAFSKWAKECRKDMEDEKLLGVRERTLTCCCLWAF 423 Query 425 RTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLK--LALQPKKEEKLL 482 R K H+ Y+ P TQ+ KVPA F +F + S+W++ L + LR ++K L+ PK E+ Sbjct 424 RKHKTHTVYKRPDTQSIQKVPAEFDSFVIPSLWSSGLSIPLRTRIKWLLSKAPKYEQLPH 483 Query 483 QVSEELVMEAKAAFEDAQEEARAEKLREALPPLVADKGIEAAAEVVCEVEGLQADIGA 540 + E EA A DA EE AE REA+PPL A + +V +VE L+ GA Sbjct 484 SGNAE---EAAQAETDAVEEQEAELTREAMPPLQA---TQDDIQVEIDVEQLEDRAGA 535 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Igbo Ora virus] Sequence ID: O90370.1 Length: 2513 Range 1: 4 to 535 Score:699 bits(1804), Expect:0.0, Method:Compositional matrix adjust., Identities:334/538(62%), Positives:413/538(76%), Gaps:9/538(1%) Query 6 VNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILD 65 V VD+D S F+ LQ+++P FEV +QVTPNDHANARAFSHLA KLIE E+ +TIL Sbjct 4 VYVDIDADSAFLKALQRAYPMFEVEPKQVTPNDHANARAFSHLAIKLIEQEIDPGSTILG 63 Query 66 IGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKDLRTVL 125 IGSAPARRM S+ +YHCVCPMRS EDP+R+ YA KLA A K+T+KN+ KI DL+ V+ Sbjct 64 IGSAPARRMMSDRKYHCVCPMRSAEDPERLANYARKLASAAGKVTDKNISGKINDLQAVM 123 Query 126 DTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGFDTTQF 184 P+ ET + C H D TC R + ++ QDVY ++AP ++YHQA+KGV YWIGFDTT F Sbjct 124 AVPNMETSTFCLHTDATCKQRGDVAIYQDVYAVHAPTSLYHQAIKGVHVAYWIGFDTTPF 183 Query 185 MFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRVYFSV 244 M++AMAG+YP+Y+TNWADE+VL+A+NIGLCST LSEGR GKLSIMR K+ KP RV FSV Sbjct 184 MYNAMAGAYPSYSTNWADEQVLKAKNIGLCSTDLSEGRRGKLSIMRGKKFKPCDRVLFSV 243 Query 245 GSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITGETVGY 304 GSTLYPE R LQSWHLPSVFHL GK S+TCRCDT+VSCEGYVVK++T+SPGI G+T GY Sbjct 244 GSTLYPESRKLLQSWHLPSVFHLKGKLSFTCRCDTIVSCEGYVVKRVTMSPGIYGKTSGY 303 Query 305 AVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLLVGLN 364 AVTH+++GFL+CK TDTV GERVSF VCTY+PATICDQMTGI+AT+++P+DAQKLLVGLN Sbjct 304 AVTHHADGFLMCKTTDTVDGERVSFSVCTYVPATICDQMTGILATEVTPEDAQKLLVGLN 363 Query 365 QRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYGCLWAF 424 QRIV+NGRT RNTNTM+NYLLPI+AQ FSKWAKE + D+++EK+LG RER LT CLWAF Sbjct 364 QRIVVNGRTQRNTNTMKNYLLPIVAQAFSKWAKECRKDMEDEKLLGVRERTLTCCCLWAF 423 Query 425 RTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLK--LALQPKKEEKLL 482 R K H+ Y+ P TQ+ KVPA F +F + S+W++ L + LR ++K L+ PK E+ Sbjct 424 RKHKTHTVYKRPDTQSIQKVPAEFDSFVIPSLWSSGLSIPLRTRIKWLLSKAPKHEQLPH 483 Query 483 QVSEELVMEAKAAFEDAQEEARAEKLREALPPLVADKGIEAAAEVVCEVEGLQADIGA 540 + E EA A DA EE AE REA+PPL A + +V +VE L+ GA Sbjct 484 SGNAE---EAAQAETDAVEEREAELTREAMPPLQA---TQDDVQVEIDVEQLEDRAGA 535 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Chikungunya virus strain Senegal 37997] Sequence ID: Q5XXP4.1 Length: 2474 Range 1: 4 to 535 Score:690 bits(1781), Expect:0.0, Method:Compositional matrix adjust., Identities:335/536(63%), Positives:422/536(78%), Gaps:5/536(0%) Query 6 VNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILD 65 V VD+D S F+ LQ+++P FEV +QVTPNDHANARAFSHLA KLIE E+ +TILD Sbjct 4 VYVDIDADSAFLKALQRAYPMFEVEPRQVTPNDHANARAFSHLAIKLIEQEIDPDSTILD 63 Query 66 IGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKDLRTVL 125 IGSAPARRM S+ +YHCVCPMRS EDP+R+ YA KLA A K+ ++N+ EKI DL+ V+ Sbjct 64 IGSAPARRMMSDRKYHCVCPMRSAEDPERLANYARKLASAAGKVLDRNISEKIGDLQAVM 123 Query 126 DTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGFDTTQF 184 PDAETP+ C H DV+C RA+ ++ QDVY ++AP ++YHQA+KGVR YWIGFDTT F Sbjct 124 AVPDAETPTFCLHTDVSCRQRADVAIYQDVYAVHAPTSLYHQAIKGVRVAYWIGFDTTPF 183 Query 185 MFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRVYFSV 244 M++AMAG+YP+Y+TNWADE+VL+A+NIGLCST L+EGR GKLSIMR K++KP RV FSV Sbjct 184 MYNAMAGAYPSYSTNWADEQVLKAKNIGLCSTDLTEGRRGKLSIMRGKKMKPCDRVLFSV 243 Query 245 GSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITGETVGY 304 GSTLYPE R L+SWHLPSVFHL GK S+TCRCDTVVSCEGYVVK+ITISPG+ G+T GY Sbjct 244 GSTLYPESRKLLKSWHLPSVFHLKGKLSFTCRCDTVVSCEGYVVKRITISPGLYGKTTGY 303 Query 305 AVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLLVGLN 364 AVTH+++GFL+CK TDTV GERVSF VCTY+PATICDQMTGI+AT+++P+DAQKLLVGLN Sbjct 304 AVTHHADGFLMCKTTDTVDGERVSFSVCTYVPATICDQMTGILATEVTPEDAQKLLVGLN 363 Query 365 QRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYGCLWAF 424 QRIV+NGRT RNTNTM+NYLLP++AQ FSKWAKE + D+++EK+LG RER LT CLWAF Sbjct 364 QRIVVNGRTQRNTNTMKNYLLPVVAQAFSKWAKECRKDMEDEKLLGIRERTLTCCCLWAF 423 Query 425 RTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEEKLLQV 484 + +K H+ Y+ P TQ+ KVPA F +F + S+W++ L + LR ++K L + L+ Sbjct 424 KKQKTHTVYKRPDTQSIQKVPAEFDSFVVPSLWSSGLSIPLRTRIKWLLSKVPKTDLIPY 483 Query 485 SEELVMEAKAAFEDAQEEARAEKLREALPPLVADKGIEAAAEVVCEVEGLQADIGA 540 S + EA+ A ++A+EE AE REALPPL A + +V +VE L+ GA Sbjct 484 SGD-AKEARDAEKEAEEEREAELTREALPPLQA---AQDDVQVEIDVEQLEDRAGA 535 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Mayaro virus (strain Brazil)] Sequence ID: Q8QZ73.3 Length: 2437 Range 1: 4 to 481 Score:687 bits(1772), Expect:0.0, Method:Compositional matrix adjust., Identities:309/478(65%), Positives:389/478(81%), Gaps:1/478(0%) Query 6 VNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILD 65 V VD++ +SPF+ LQ++FP FEV AQQVTPNDHANARAFSHLA+KLIE E ILD Sbjct 4 VFVDIEAESPFLKSLQRAFPAFEVEAQQVTPNDHANARAFSHLATKLIEQETEKDTLILD 63 Query 66 IGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKDLRTVL 125 IGSAPARRM SEH YHCVCPMRS EDP+R++ YA KLA+ + ++ ++N+ KI DL++V+ Sbjct 64 IGSAPARRMMSEHTYHCVCPMRSAEDPERLLYYARKLAKASGEVVDRNIAAKIDDLQSVM 123 Query 126 DTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGFDTTQF 184 TPD E+ + C H D TC +AE +V QDVY ++AP ++Y QAMKGVRT YWIGFDTT F Sbjct 124 ATPDNESRTFCLHTDQTCRTQAEVAVYQDVYAVHAPTSLYFQAMKGVRTAYWIGFDTTPF 183 Query 185 MFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRVYFSV 244 MF MAG+YP Y TNWADE+VL+ARNIGLCS L+EG GKLSIMRKK++ P ++ FSV Sbjct 184 MFDTMAGAYPTYATNWADEQVLKARNIGLCSASLTEGHLGKLSIMRKKKMTPSDQIMFSV 243 Query 245 GSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITGETVGY 304 GSTLY E R L+SWHLPSVFHL G+QSYTCRCDT+VSCEGYVVKKIT+SPG+ G+T GY Sbjct 244 GSTLYIESRRLLKSWHLPSVFHLKGRQSYTCRCDTIVSCEGYVVKKITMSPGVFGKTSGY 303 Query 305 AVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLLVGLN 364 AVTH++EGFL+CK TDT+ GERVSFP+CTY+P+TICDQMTGI+AT+++P+DAQKLLVGLN Sbjct 304 AVTHHAEGFLVCKTTDTIAGERVSFPICTYVPSTICDQMTGILATEVTPEDAQKLLVGLN 363 Query 365 QRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYGCLWAF 424 QRIV+NGRT RNTNTM+NYLLP+++Q FSKWAKE + D ++EK +G RER LT CLWAF Sbjct 364 QRIVVNGRTQRNTNTMKNYLLPVVSQAFSKWAKEYRLDQEDEKNMGMRERTLTCCCLWAF 423 Query 425 RTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEEKLL 482 +T K H+ Y+ P TQT VKVP+ F++F + S+W+ L + +R +++L LQ ++ E L+ Sbjct 424 KTHKNHTMYKKPDTQTIVKVPSEFNSFVIPSLWSAGLSIGIRHRIRLLLQSRRVEPLV 481 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Barmah Forest virus] Sequence ID: P87515.3 Length: 2411 Range 1: 1 to 513 Score:685 bits(1768), Expect:0.0, Method:Compositional matrix adjust., Identities:318/517(62%), Positives:399/517(77%), Gaps:5/517(0%) Query 1 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTT 60 M KPVV +DV+P+S F Q+Q FPQFE+ A Q TPNDHA+ARAFSHLA+KLIE+E Sbjct 1 MAKPVVKIDVEPESHFAKQVQSCFPQFEIEAVQTTPNDHAHARAFSHLATKLIEMETAKD 60 Query 61 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD 120 ILDIGSAPARR++SEH+YHCVCPM+ EDP+RM+ YA KL + K EK++D Sbjct 61 QIILDIGSAPARRLYSEHKYHCVCPMKCTEDPERMLGYARKLIAGSAK----GKAEKLRD 116 Query 121 LRTVLDTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGF 179 LR VL TPD ET SLC H D +C R + +V QDVY I+AP T+YHQA+KGVRT YWIGF Sbjct 117 LRDVLATPDIETQSLCLHTDASCRYRGDVAVYQDVYAIDAPTTLYHQALKGVRTAYWIGF 176 Query 180 DTTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSR 239 DTT FM+ A+AG+YP Y+TNWADE+VLE+RNIGLCS K+SEG SI+RKK LK R Sbjct 177 DTTPFMYDALAGAYPLYSTNWADEQVLESRNIGLCSDKVSEGGKKGRSILRKKFLKQSDR 236 Query 240 VYFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITG 299 V FSVGSTLY E R LQSWHLPS FHL GK S+TCRCDT+VSCEGYV+KKIT+ PG+TG Sbjct 237 VMFSVGSTLYTESRKLLQSWHLPSTFHLKGKSSFTCRCDTIVSCEGYVLKKITMCPGVTG 296 Query 300 ETVGYAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKL 359 + +GYAVTH+ EGF++ KVTDT++GERVSF VCTY+P T+CDQMTGI+AT+++ DDAQKL Sbjct 297 KPIGYAVTHHKEGFVVGKVTDTIRGERVSFAVCTYVPTTLCDQMTGILATEVTADDAQKL 356 Query 360 LVGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYG 419 LVGLNQRIV+NGRT RNTNTM+NYLLP++AQ +KWAKE K D+++E+ L R+R LT Sbjct 357 LVGLNQRIVVNGRTQRNTNTMKNYLLPLVAQALAKWAKEAKQDMEDERPLNERQRTLTCL 416 Query 420 CLWAFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEE 479 C WAF+ K H+ Y+ P TQ+ VKVP F++FP+ S+W+ + +SLRQKLK+ LQ ++ Sbjct 417 CCWAFKRNKRHAIYKRPDTQSIVKVPCEFTSFPLVSLWSAGMSISLRQKLKMMLQARQPT 476 Query 480 KLLQVSEELVMEAKAAFEDAQEEARAEKLREALPPLV 516 ++ V+EEL+ EA A ++A + A AE A P +V Sbjct 477 QIAAVTEELIQEAAAVEQEAVDTANAELDHAAWPSIV 513 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Chikungunya virus strain S27-African prototype] Sequence ID: Q8JUX6.1 Length: 2474 Range 1: 4 to 535 Score:679 bits(1753), Expect:0.0, Method:Compositional matrix adjust., Identities:322/536(60%), Positives:410/536(76%), Gaps:5/536(0%) Query 6 VNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILD 65 V VD+D S F+ LQ+++P FEV +QVTPNDHANARAFSHLA KLIE E+ +TILD Sbjct 4 VYVDIDADSAFLKALQRAYPMFEVEPRQVTPNDHANARAFSHLAIKLIEQEIDPDSTILD 63 Query 66 IGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKDLRTVL 125 IGSAPARRM S+ +YHCVCPMRS EDP+R+ YA KLA A K+ ++N+ KI DL+ V+ Sbjct 64 IGSAPARRMMSDRKYHCVCPMRSAEDPERLANYARKLASAAGKVLDRNISGKIGDLQAVM 123 Query 126 DTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGFDTTQF 184 PD ETP+ C H DV+C RA+ ++ QDVY ++AP ++YHQA+KGVR YW+GFDTT F Sbjct 124 AVPDTETPTFCLHTDVSCRQRADVAIYQDVYAVHAPTSLYHQAIKGVRLAYWVGFDTTPF 183 Query 185 MFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRVYFSV 244 M++AMAG+YP+Y+TNWADE+VL+A+NIGLCST L+EGR GKLSIMR K+L+P RV FSV Sbjct 184 MYNAMAGAYPSYSTNWADEQVLKAKNIGLCSTDLTEGRRGKLSIMRGKKLEPCDRVLFSV 243 Query 245 GSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITGETVGY 304 GSTLYPE R L+SWHLPSVFHL GK S+TCRCDTVVSCEGYVVK+IT+SPG+ G+T GY Sbjct 244 GSTLYPESRKLLKSWHLPSVFHLKGKLSFTCRCDTVVSCEGYVVKRITMSPGLYGKTTGY 303 Query 305 AVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLLVGLN 364 AVTH+++GFL+CK TDTV GERVSF VCTY+PATICDQMTGI+AT+++P+DAQKLLVGLN Sbjct 304 AVTHHADGFLMCKTTDTVDGERVSFSVCTYVPATICDQMTGILATEVTPEDAQKLLVGLN 363 Query 365 QRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYGCLWAF 424 QRIV+NGRT RNTNTM+NY++P++AQ FSKWAKE + D+++EK+LG RER LT CLWAF Sbjct 364 QRIVVNGRTQRNTNTMKNYMIPVVAQAFSKWAKECRKDMEDEKLLGVRERTLTCCCLWAF 423 Query 425 RTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEEKLLQV 484 + +K H+ Y+ P TQ+ KV A F +F + S+W++ L + LR ++K L + L Sbjct 424 KKQKTHTVYKRPDTQSIQKVQAEFDSFVVPSLWSSGLSIPLRTRIKWLLSKVPKTDLTPY 483 Query 485 SEELVMEAKAAFEDAQEEARAEKLREALPPLVADKGIEAAAEVVCEVEGLQADIGA 540 S + A E +E L EALPPL + + +V +VE L+ GA Sbjct 484 SGDAQEARDAEKEAEEEREAELTL-EALPPL---QAAQEDVQVEIDVEQLEDRAGA 535 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain P676)] Sequence ID: P36328.2 Length: 2493 Range 1: 1 to 516 Score:674 bits(1739), Expect:0.0, Method:Compositional matrix adjust., Identities:315/519(61%), Positives:402/519(77%), Gaps:4/519(0%) Query 1 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTT 60 MEK V+VD++ SPF+ LQ+SFPQFEV A+QVT NDHANARAFSHLASKLIE EV + Sbjct 1 MEK--VHVDIEEDSPFLRALQRSFPQFEVEAKQVTDNDHANARAFSHLASKLIETEVDPS 58 Query 61 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD 120 TILDIGSAPARRM+S+H+YHC+CPMR EDPDR+ KYA+KL + +IT+K L +K+K+ Sbjct 59 DTILDIGSAPARRMYSKHKYHCICPMRCAEDPDRLYKYATKLKKNCKEITDKELDKKMKE 118 Query 121 LRTVLDTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGF 179 L V+ PD ET ++C H+D +C + +V QDVY ++ P ++YHQA KGVR YWIGF Sbjct 119 LAAVMSDPDLETETMCLHDDESCRYEGQVAVYQDVYAVDGPTSLYHQANKGVRVAYWIGF 178 Query 180 DTTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSR 239 DTT FMF +AG+YP+Y+TNWADE VL ARNIGLCS+ + E +SI+RKK LKP + Sbjct 179 DTTPFMFKNLAGAYPSYSTNWADETVLTARNIGLCSSDVMERSRRGMSILRKKYLKPSNN 238 Query 240 VYFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITG 299 V FSVGST+Y E R L+SWHLPSVFHL GKQ+YTCRC+T+VSC+GYVVK+I ISPG+ G Sbjct 239 VLFSVGSTIYHEKRDLLRSWHLPSVFHLRGKQNYTCRCETIVSCDGYVVKRIAISPGLYG 298 Query 300 ETVGYAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKL 359 + GYA T + EGFL CKVTDT+ GERVSFPVCTY+PAT+CDQMTGI+ATD+S DDAQKL Sbjct 299 KPSGYAATMHREGFLCCKVTDTLNGERVSFPVCTYVPATLCDQMTGILATDVSADDAQKL 358 Query 360 LVGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYG 419 LVGLNQRIV+NGRT RNTNTM+NYLLP++AQ F++WAKE K+D ++E+ LG R+R+L G Sbjct 359 LVGLNQRIVVNGRTQRNTNTMKNYLLPVVAQAFARWAKEYKEDQEDERPLGLRDRQLVMG 418 Query 420 CLWAFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEE 479 C WAFR K+ S Y+ P TQT +KV + F +F + + + +L + LR +++ L+ KE Sbjct 419 CCWAFRRHKITSIYKRPDTQTIIKVNSDFHSFVLPRIGSNTLEIGLRTRIRKMLEEHKEP 478 Query 480 KLLQVSEELVMEAKAAFEDAQEEARAEKLREALPPLVAD 518 L +E+ + EAK A ++A+E AE+LR ALPPL AD Sbjct 479 SPLITAED-IQEAKCAADEAKEVREAEELRAALPPLAAD 516 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Trinidad donkey)] Sequence ID: P27282.3 Length: 2493 Range 1: 1 to 516 Score:674 bits(1738), Expect:0.0, Method:Compositional matrix adjust., Identities:316/519(61%), Positives:402/519(77%), Gaps:4/519(0%) Query 1 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTT 60 MEK V+VD++ SPF+ LQ+SFPQFEV A+QVT NDHANARAFSHLASKLIE EV + Sbjct 1 MEK--VHVDIEEDSPFLRALQRSFPQFEVEAKQVTDNDHANARAFSHLASKLIETEVDPS 58 Query 61 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD 120 TILDIGSAPARRM+S+H+YHC+CPMR EDPDR+ KYA+KL + +IT+K L +K+K+ Sbjct 59 DTILDIGSAPARRMYSKHKYHCICPMRCAEDPDRLYKYATKLKKNCKEITDKELDKKMKE 118 Query 121 LRTVLDTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGF 179 L V+ PD ET ++C H+D +C + +V QDVY ++ P ++YHQA KGVR YWIGF Sbjct 119 LAAVMSDPDLETETMCLHDDESCRYEGQVAVYQDVYAVDGPTSLYHQANKGVRVAYWIGF 178 Query 180 DTTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSR 239 DTT FMF +AG+YP+Y+TNWADE VL ARNIGLCS+ + E +SI+RKK LKP + Sbjct 179 DTTPFMFKNLAGAYPSYSTNWADETVLTARNIGLCSSDVMERSRRGMSILRKKYLKPSNN 238 Query 240 VYFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITG 299 V FSVGST+Y E R L+SWHLPSVFHL GKQ+YTCRC+T+VSC+GYVVK+I ISPG+ G Sbjct 239 VLFSVGSTIYHEKRDLLRSWHLPSVFHLRGKQNYTCRCETIVSCDGYVVKRIAISPGLYG 298 Query 300 ETVGYAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKL 359 + GYA T + EGFL CKVTDT+ GERVSFPVCTY+PAT+CDQMTGI+ATD+S DDAQKL Sbjct 299 KPSGYAATMHREGFLCCKVTDTLNGERVSFPVCTYVPATLCDQMTGILATDVSADDAQKL 358 Query 360 LVGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYG 419 LVGLNQRIV+NGRT RNTNTM+NYLLP++AQ F++WAKE K+D ++E+ LG R+R+L G Sbjct 359 LVGLNQRIVVNGRTQRNTNTMKNYLLPVVAQAFARWAKEYKEDQEDERPLGLRDRQLVMG 418 Query 420 CLWAFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEE 479 C WAFR K+ S Y+ P TQT +KV + F +F + + + +L + LR +++ L+ KE Sbjct 419 CCWAFRRHKITSIYKRPDTQTIIKVNSDFHSFVLPRIGSNTLEIGLRTRIRKMLEEHKEP 478 Query 480 KLLQVSEELVMEAKAAFEDAQEEARAEKLREALPPLVAD 518 L +E+ V EAK A ++A+E AE+LR ALPPL AD Sbjct 479 SPLITAED-VQEAKCAADEAKEVREAEELRAALPPLAAD 516 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain 3880)] Sequence ID: P36327.3 Length: 2485 Range 1: 1 to 516 Score:672 bits(1733), Expect:0.0, Method:Compositional matrix adjust., Identities:314/519(61%), Positives:401/519(77%), Gaps:4/519(0%) Query 1 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTT 60 MEK V+VD++ SPF+ LQ+SFPQFEV A+QVT NDHANARAFSHLASKLIE EV + Sbjct 1 MEK--VHVDIEEDSPFLRALQRSFPQFEVEAKQVTDNDHANARAFSHLASKLIETEVDPS 58 Query 61 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD 120 TILDIGSAPARRM+S+H+YHC+CPMR EDPDR+ KYA+KL + +IT+K L +K+K+ Sbjct 59 DTILDIGSAPARRMYSKHKYHCICPMRCAEDPDRLYKYATKLKKNCKEITDKELDKKMKE 118 Query 121 LRTVLDTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGF 179 L V+ PD ET ++C H+D +C + +V QDVY ++ P ++YHQA KGVR YWIGF Sbjct 119 LAAVMSDPDLETETMCLHDDESCRYEGQVAVYQDVYAVDGPTSLYHQANKGVRVAYWIGF 178 Query 180 DTTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSR 239 DTT FMF +AG+YP+Y+TNWADE VL ARNIGLCS+ + E +SI+RKK LKP + Sbjct 179 DTTPFMFKNLAGAYPSYSTNWADETVLTARNIGLCSSDVMERSRRGMSILRKKYLKPSNN 238 Query 240 VYFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITG 299 V FSVGST+Y E R L+SWHLPSVFHL GKQ+YTCRC+T+VSC+GYVVK+I ISPG+ G Sbjct 239 VLFSVGSTIYHEKRDLLRSWHLPSVFHLRGKQNYTCRCETIVSCDGYVVKRIAISPGLYG 298 Query 300 ETVGYAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKL 359 + GYA T + EGFL CKVTDT+ GERVSFPVCTY+PAT+CDQMTGI+ATD+S DDAQKL Sbjct 299 KPSGYAATMHREGFLCCKVTDTLNGERVSFPVCTYVPATLCDQMTGILATDVSADDAQKL 358 Query 360 LVGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYG 419 LVGLNQRIV+NGRT RNTNTM+NYLLP++AQ F++WAKE K+D ++E+ LG R+R+L G Sbjct 359 LVGLNQRIVVNGRTQRNTNTMKNYLLPVVAQAFARWAKEYKEDQEDERPLGLRDRQLVMG 418 Query 420 CLWAFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEE 479 C WAFR K+ S Y+ P TQT +KV + F +F + + + +L + LR +++ L+ KE Sbjct 419 CCWAFRRHKITSIYKRPDTQTIIKVNSDFHSFVLPRIGSNTLEIGLRTRIRKMLEEHKEP 478 Query 480 KLLQVSEELVMEAKAAFEDAQEEARAEKLREALPPLVAD 518 L +E+ + EAK A ++A+E AE+LR LPPL AD Sbjct 479 SPLITAED-IQEAKCAADEAKEVREAEELRAVLPPLAAD 516 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Mena II)] Sequence ID: Q9WJC7.3 Length: 2499 Range 1: 1 to 534 Score:660 bits(1703), Expect:0.0, Method:Compositional matrix adjust., Identities:316/537(59%), Positives:411/537(76%), Gaps:7/537(1%) Query 1 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTT 60 MEK V+VD++ SPF+ LQ+SFPQFEV A+QVT NDHANARAFSHLASKLIE EV + Sbjct 1 MEK--VHVDIEEDSPFLRALQRSFPQFEVEAKQVTDNDHANARAFSHLASKLIETEVEPS 58 Query 61 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD 120 TILDIGSAPARRM+S+H+YHC+CPM+ EDPDR+ KYA+KL + +IT+K L +K+K+ Sbjct 59 DTILDIGSAPARRMYSKHKYHCICPMKCAEDPDRLFKYAAKLKKNCKEITDKELDKKMKE 118 Query 121 LRTVLDTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGF 179 L V++ PD ET ++C H+D TC + +V QDVY ++ P ++YHQA KGVR YWIGF Sbjct 119 LAEVMNDPDLETETICLHDDETCRFEGQVAVYQDVYAVDGPTSLYHQANKGVRVAYWIGF 178 Query 180 DTTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSR 239 DTT FMF +AG+YP+Y+TNWADE VL ARNIGLCS+ + E +SI+RKK LKP + Sbjct 179 DTTPFMFKNLAGAYPSYSTNWADETVLTARNIGLCSSDVMERSRRGMSILRKKFLKPSNN 238 Query 240 VYFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITG 299 V FSVGST+Y E R L+SWHLPSVFHL GKQ+YTCRC+T+VSC+GYVVK+I ISPG+ G Sbjct 239 VLFSVGSTIYHEKRDLLRSWHLPSVFHLRGKQNYTCRCETIVSCDGYVVKRIAISPGLYG 298 Query 300 ETVGYAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKL 359 + GYA T + EGFL CKVTDT+ GERVSFPVCTY+PAT+CDQMTGI+ATD+S DDAQKL Sbjct 299 KPSGYAATMHREGFLCCKVTDTLNGERVSFPVCTYVPATLCDQMTGILATDVSADDAQKL 358 Query 360 LVGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYG 419 LVGLNQRIV+NGRT RNTNTM+NYLLP++AQ F++WAKE K+D ++E+ LG R+R+L G Sbjct 359 LVGLNQRIVVNGRTQRNTNTMKNYLLPVVAQAFARWAKEYKEDQEDERPLGLRDRQLVMG 418 Query 420 CLWAFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEE 479 C WAFR K+ S Y+ P TQT +KV + F +F + + +++L + LR ++K L+ + Sbjct 419 CCWAFRKHKITSVYKRPDTQTIIKVNSDFHSFVLPRIGSSTLEIGLRTRIKKLLEEPVDR 478 Query 480 KLLQVSEELVMEAKAAFEDAQEEARAEKLREALPPLVAD---KGIEAAAEVVCEVEG 533 L +++ + EAK A ++A+E AE+LR ALPPL AD +EA +++ + G Sbjct 479 PPLITADD-IQEAKNAADEAKEVKEAEELRAALPPLSADVEEPALEADVDLMLQEAG 534 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain PE-0.0155)] Sequence ID: Q306W6.3 Length: 2471 Range 1: 1 to 532 Score:657 bits(1695), Expect:0.0, Method:Compositional matrix adjust., Identities:325/537(61%), Positives:402/537(74%), Gaps:9/537(1%) Query 1 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTT 60 MEK V+VD+D SP+V LQK FP FE+ A QVT NDHANARAFSHLA+KLIE EV Sbjct 1 MEK--VHVDLDADSPYVKSLQKCFPHFEIEATQVTDNDHANARAFSHLATKLIESEVDPD 58 Query 61 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD 120 ILDIGSAP R S+H+YHC+CPM S EDPDR+ +YA KL + +T++ + K D Sbjct 59 QVILDIGSAPVRHTHSKHKYHCICPMISAEDPDRLHRYADKL--RKSDVTDRFIASKAAD 116 Query 121 LRTVLDTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGF 179 L TV+ TPD ETPSLC H D TC +V QDVY ++AP +IYHQA+KGVRT+YWIGF Sbjct 117 LLTVMSTPDVETPSLCMHTDSTCRYHGTVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGF 176 Query 180 DTTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSR 239 DTT FM+ MAG+YP YNTNWADE VLEARNIGLCS+ L E R GK+SIMRKK+L+P ++ Sbjct 177 DTTPFMYKNMAGAYPTYNTNWADESVLEARNIGLCSSDLHEQRFGKISIMRKKKLQPTNK 236 Query 240 VYFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITG 299 V FSVGST+Y E R L+SWHLP+VFHL GK S+T RC+T+VSCEGYVVKKITISPGI G Sbjct 237 VVFSVGSTIYTEERILLRSWHLPNVFHLKGKTSFTGRCNTIVSCEGYVVKKITISPGIYG 296 Query 300 ETVGYAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKL 359 + A T + EGFL CKVTDT++GERVSFPVCTY+PAT+CDQMTGI+ATD+S DDAQKL Sbjct 297 KVDNLASTMHREGFLSCKVTDTLRGERVSFPVCTYVPATLCDQMTGILATDVSVDDAQKL 356 Query 360 LVGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYG 419 LVGLNQRIV+NGRT RNTNTM NYLLPI+AQ FS+WA+E DL++EK LG RER L G Sbjct 357 LVGLNQRIVVNGRTQRNTNTMPNYLLPIVAQAFSRWAREYHADLEDEKDLGVRERSLVMG 416 Query 420 CLWAFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEE 479 C WAF+T K+ S Y+ PGTQT KVPA F++F + + + L + LR+++K+ L+ KK+ Sbjct 417 CCWAFKTHKITSIYKKPGTQTTKKVPAVFNSFVVPQLTSYGLDIELRRRIKMLLEEKKKP 476 Query 480 KLLQVSEELVMEAKAAFEDAQEEARAEKLREALPPL---VADKGIEAAAEVVCEVEG 533 + ++E V K E+A+ A AE +R ALPPL V + +EA +++ + G Sbjct 477 API-ITEADVAHLKGMQEEAEVVAEAEAIRAALPPLLPEVERETVEADIDLIMQEAG 532 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain CPA201)] Sequence ID: Q8V294.3 Length: 2497 Range 1: 1 to 534 Score:657 bits(1694), Expect:0.0, Method:Compositional matrix adjust., Identities:315/537(59%), Positives:408/537(75%), Gaps:7/537(1%) Query 1 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTT 60 MEK V+VD++ SPF+ LQ+SFPQFEV A+QVT NDHANARAFSHLASKLIE EV + Sbjct 1 MEK--VHVDIEEDSPFLRALQRSFPQFEVEAKQVTDNDHANARAFSHLASKLIETEVEPS 58 Query 61 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD 120 TILDIGSAPARRM+S+H+YHC+CPM+ EDPDR+ KYA+KL + IT+K L +K+K+ Sbjct 59 DTILDIGSAPARRMYSKHKYHCICPMKCAEDPDRLFKYAAKLKKNCKDITDKELDKKMKE 118 Query 121 LRTVLDTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGF 179 L V+ PD ET ++C H+D TC + +V QDVY ++ P ++YHQA KGVR YWIGF Sbjct 119 LAEVMSDPDLETETICLHDDETCRFEGQVAVYQDVYAVDGPTSLYHQANKGVRVAYWIGF 178 Query 180 DTTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSR 239 DTT FMF +AG+YP+Y+TNWADE VL ARNIGLCS+ + E +SI+RKK LKP + Sbjct 179 DTTPFMFKNLAGAYPSYSTNWADETVLTARNIGLCSSDVMERSRRGMSILRKKFLKPSNN 238 Query 240 VYFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITG 299 V FSVGST+Y E R L+SWHLPSVFHL GKQ+YTCRC+T+VSC+GYVVK+I ISPG+ G Sbjct 239 VLFSVGSTIYHEKRDLLRSWHLPSVFHLRGKQNYTCRCETIVSCDGYVVKRIAISPGLYG 298 Query 300 ETVGYAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKL 359 + GYA T + EGFL CKVTDT+ GERVSFPVCTY+PAT+CDQMTGI+ATD+S DDAQKL Sbjct 299 KPSGYAATMHREGFLCCKVTDTLDGERVSFPVCTYVPATLCDQMTGILATDVSADDAQKL 358 Query 360 LVGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYG 419 LVGLNQRIV+NGRT RNTNTM+NYLLP++AQ F++WAKE K+D ++E+ LG R+R+L G Sbjct 359 LVGLNQRIVVNGRTQRNTNTMKNYLLPVVAQAFARWAKEYKEDQEDERPLGLRDRQLVMG 418 Query 420 CLWAFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEE 479 C WAFR K+ S Y+ P TQT +KV + F +F + + + +L + LR +++ L+ + Sbjct 419 CCWAFRKHKITSVYKRPDTQTIIKVNSDFHSFVLPRIGSNTLEIGLRTRIRKLLEEPVDR 478 Query 480 KLLQVSEELVMEAKAAFEDAQEEARAEKLREALPPLVAD---KGIEAAAEVVCEVEG 533 L +++ + EAK A ++A+E AE+LR ALPPL AD +EA +++ + G Sbjct 479 PPLITADD-IQEAKNAADEAKEVKEAEELRAALPPLSADVEEPALEADVDLMLQEAG 534 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Western equine encephalitis virus] Sequence ID: P13896.3 Length: 2467 Range 1: 1 to 472 Score:654 bits(1687), Expect:0.0, Method:Compositional matrix adjust., Identities:304/476(64%), Positives:373/476(78%), Gaps:5/476(1%) Query 1 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTT 60 ME+ ++VD+D SP+V LQ++FPQFE+ A+QVT NDHANARAFSH+A+KLIE EV Sbjct 1 MER--IHVDLDADSPYVKSLQRTFPQFEIEARQVTDNDHANARAFSHVATKLIESEVDRD 58 Query 61 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD 120 ILDIGSAP R S H+YHC+CPM S EDPDR+ +YA +L K IT+KN+ K D Sbjct 59 QVILDIGSAPVRHAHSNHRYHCICPMISAEDPDRLQRYAERL--KKSDITDKNIASKAAD 116 Query 121 LRTVLDTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGF 179 L V+ TPDAETPSLC H D TC +V QDVY ++AP +IYHQA+KGVRT+YWIGF Sbjct 117 LLEVMSTPDAETPSLCMHTDATCRYFGSVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGF 176 Query 180 DTTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSR 239 DTT FM+ MAGSYP YNTNWADE+VLEARNIGL ++ L E R GKLSI+RKK L+P ++ Sbjct 177 DTTPFMYKNMAGSYPTYNTNWADERVLEARNIGLGNSDLQESRLGKLSILRKKRLQPTNK 236 Query 240 VYFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITG 299 + FSVGST+Y E R+ L+SWHLP+VFHL GK ++T RC T+VSCEGYV+KKITISPG+ G Sbjct 237 IIFSVGSTIYTEDRSLLRSWHLPNVFHLKGKSNFTGRCGTIVSCEGYVIKKITISPGLYG 296 Query 300 ETVGYAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKL 359 + A T + EGFL CKVTDT++GERVSF VCTY+PAT+CDQMTGI+ATD+S DDAQKL Sbjct 297 KVENLASTMHREGFLSCKVTDTLRGERVSFAVCTYVPATLCDQMTGILATDVSVDDAQKL 356 Query 360 LVGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYG 419 LVGLNQRIV+NGRT RNTNTMQNYLLP++AQ FS+WA+E + DLD+EK LG RER LT G Sbjct 357 LVGLNQRIVVNGRTQRNTNTMQNYLLPVVAQAFSRWAREHRADLDDEKELGVRERTLTMG 416 Query 420 CLWAFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQP 475 C WAF+T+K+ S Y+ PGTQT KVPA F +F + + + L M R++LKL L+P Sbjct 417 CCWAFKTQKITSIYKKPGTQTIKKVPAVFDSFVIPRLTSHGLDMGFRRRLKLLLEP 472 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain PE-3.0815)] Sequence ID: Q306W8.3 Length: 2474 Range 1: 1 to 532 Score:652 bits(1681), Expect:0.0, Method:Compositional matrix adjust., Identities:324/537(60%), Positives:403/537(75%), Gaps:9/537(1%) Query 1 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTT 60 MEK V+VD+D SP+V LQK FP FE+ A QVT NDHANARAFSHLA+KLIE EV Sbjct 1 MEK--VHVDLDADSPYVKLLQKCFPHFEIEATQVTDNDHANARAFSHLATKLIESEVDPD 58 Query 61 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD 120 ILDIGSAP R S+H+YHC+CPM S EDPDR+ +YA KL + +T++ + K D Sbjct 59 QVILDIGSAPVRHTHSKHKYHCICPMISAEDPDRLQRYADKL--RKSDVTDRFIASKAAD 116 Query 121 LRTVLDTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGF 179 L TV+ TPD ETPSLC H D TC +V QDVY ++AP +IYHQA+KGVRT+YWIGF Sbjct 117 LLTVMSTPDVETPSLCMHTDSTCRYHGTVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGF 176 Query 180 DTTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSR 239 DTT FM+ MAG+YP YNTNWADE VLEARNIGLCS+ L E R GK+SIMRKK+L+P ++ Sbjct 177 DTTPFMYKNMAGAYPTYNTNWADESVLEARNIGLCSSDLHEKRLGKISIMRKKKLQPTNK 236 Query 240 VYFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITG 299 V FSVGST+Y E R L+SWHLP+VFHL GK S+T RC+T+VSC+GYVVKKITISPGI G Sbjct 237 VVFSVGSTIYTEERILLRSWHLPNVFHLKGKTSFTGRCNTIVSCDGYVVKKITISPGIYG 296 Query 300 ETVGYAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKL 359 + A T + EGFL CKVTDT++GERVSFPVCTY+PAT+CDQMTGI+ATD+S DDAQKL Sbjct 297 KVDNLASTLHREGFLSCKVTDTLRGERVSFPVCTYVPATLCDQMTGILATDVSVDDAQKL 356 Query 360 LVGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYG 419 LVGLNQRIV+NGRT RNTNTMQNYLLP++AQ FS+WA+E + DL++EK LG RER L G Sbjct 357 LVGLNQRIVVNGRTQRNTNTMQNYLLPVVAQAFSRWAREYRADLEDEKDLGVRERSLVMG 416 Query 420 CLWAFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEE 479 C WAF+T K+ S Y+ PGTQT KVPA F++F + + L + LR+++K+ L+ K++ Sbjct 417 CCWAFKTHKITSIYKKPGTQTIKKVPAVFNSFVIPQFNSYGLNIGLRRRIKMLLEEKRKP 476 Query 480 KLLQVSEELVMEAKAAFEDAQEEARAEKLREALPPL---VADKGIEAAAEVVCEVEG 533 + ++E V K E+A+ A AE +R ALPPL V + IEA +++ + G Sbjct 477 API-ITEADVAHLKGMQEEAEAVAEAEAVRAALPPLLPEVERETIEADIDLIMQEAG 532 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain Florida 91-469)] Sequence ID: Q4QXJ8.3 Length: 2494 Range 1: 1 to 532 Score:649 bits(1674), Expect:0.0, Method:Compositional matrix adjust., Identities:322/537(60%), Positives:401/537(74%), Gaps:9/537(1%) Query 1 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTT 60 MEK V+VD+D SPFV LQ+ FP FE+ A QVT NDHANARAFSHLA+KLIE EV T Sbjct 1 MEK--VHVDLDADSPFVKSLQRCFPHFEIEATQVTDNDHANARAFSHLATKLIEGEVDTD 58 Query 61 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD 120 ILDIGSAP R S+H+YHC+CPM+S EDPDR+ +YA KL + +T+K + K D Sbjct 59 QVILDIGSAPVRHTHSKHKYHCICPMKSAEDPDRLYRYADKL--RKSDVTDKCIASKAAD 116 Query 121 LRTVLDTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGF 179 L TV+ TPDAETPSLC H D TC +V QDVY ++AP +IY+QA+KGVRT+YWIGF Sbjct 117 LLTVMSTPDAETPSLCMHTDSTCRYHGSVAVYQDVYAVHAPTSIYYQALKGVRTIYWIGF 176 Query 180 DTTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSR 239 DTT FM+ MAG+YP YNTNWADE VLEARNIGL S+ L E GK+SIMRKK+L+P ++ Sbjct 177 DTTPFMYKNMAGAYPTYNTNWADESVLEARNIGLGSSDLHEKSFGKVSIMRKKKLQPTNK 236 Query 240 VYFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITG 299 V FSVGST+Y E R L+SWHLP+VFHL GK S+T RC+T+VSCEGYVVKKIT+SPGI G Sbjct 237 VIFSVGSTIYTEERILLRSWHLPNVFHLKGKTSFTGRCNTIVSCEGYVVKKITLSPGIYG 296 Query 300 ETVGYAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKL 359 + A T + EGFL CKVTDT++GERVSFPVCTY+PAT+CDQMTGI+ATD+S DDAQKL Sbjct 297 KVDNLASTMHREGFLSCKVTDTLRGERVSFPVCTYVPATLCDQMTGILATDVSVDDAQKL 356 Query 360 LVGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYG 419 LVGLNQRIV+NGRT RNTNTMQNYLLP++AQ FS+WA+E + DL++EK LG RER L G Sbjct 357 LVGLNQRIVVNGRTQRNTNTMQNYLLPVVAQAFSRWAREHRADLEDEKGLGVRERSLVMG 416 Query 420 CLWAFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEE 479 C WAF+T K+ S Y+ PGTQT KVPA F++F + + L + LR+++K+ KK Sbjct 417 CCWAFKTHKITSIYKRPGTQTIKKVPAVFNSFVIPQPTSYGLDIGLRRRIKMLFDAKKAP 476 Query 480 KLLQVSEELVMEAKAAFEDAQEEARAEKLREALPPL---VADKGIEAAAEVVCEVEG 533 + ++E V K ++A+ A AE +R ALPPL V + +EA +++ + G Sbjct 477 API-ITEADVAHLKGLQDEAEAVAEAEAVRAALPPLLPEVDKETVEADIDLIMQEAG 532 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Salmon pancreas disease virus] Sequence ID: Q8JJX1.1 Length: 2601 Range 1: 15 to 536 Score:424 bits(1089), Expect:8e-131, Method:Compositional matrix adjust., Identities:233/526(44%), Positives:318/526(60%), Gaps:17/526(3%) Query 6 VNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATIL- 64 V V++ P + Q + +FP FEVVA + NDHA ARAFSHLA+K IE ++ I+ Sbjct 15 VTVNLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIGGRQVIVA 74 Query 65 DIGSAPARRMFSEHQ--YHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKDLR 122 DIGSAPARR+ + YH VCP + EDP+R+ YA KL + ++EKI DL+ Sbjct 75 DIGSAPARRIGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVERGDGHLVNEKITDLK 134 Query 123 TVLDTPDA--ETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGF 179 VL+ PD ET S+C ++DV+C ++A+ +V QDVY ++AP TIY QA KG R +YWIGF Sbjct 135 DVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGF 194 Query 180 DTTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSR 239 + F AMAGS+P Y+ NW+D VL A+N+ LC + LSE R K L P Sbjct 195 EPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSGE 254 Query 240 VYFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITG 299 +++SVGST Y E R L+SWHLPS FH YTCRCDTVVSC GYVVKKITI GI G Sbjct 255 IHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGIVG 314 Query 300 ETVG--YAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQ 357 A +++ +G ++ K +DT+ E+VSFPV TYIPA ICDQMT + A + DA Sbjct 315 IPAKEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTANPVKYSDAV 374 Query 358 KLLVGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLT 417 KLLVGLNQRIV+NG T RN N+M N L+P+ A+ WA E + D+++E+ L T Sbjct 375 KLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEVRRDMEDEQDLYGITSVTT 434 Query 418 YGCLW-AFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTT----SLPMSLRQKLKLA 472 + C+ A+ ++ H+FYR P + + VPA F+ +++ T L L LK A Sbjct 435 WICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRAALSATYLNLPLKQLLLNTLKRA 494 Query 473 LQPKKEEKLLQVSEELVMEAKAAFEDAQEEARAEKLREALPPLVAD 518 ++P ++ + +E L +A E +EE R + A P +AD Sbjct 495 IKP-MDQAIADETEALAHDAAEVHELTEEERRQQA---ANPSYIAD 536 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sleeping disease virus] Sequence ID: Q8QL53.1 Length: 2593 Range 1: 15 to 536 Score:422 bits(1085), Expect:3e-130, Method:Compositional matrix adjust., Identities:232/526(44%), Positives:315/526(59%), Gaps:17/526(3%) Query 6 VNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATIL- 64 V VD+ P + Q + +FP FEVVA + NDHA ARAFSHLA+K IE ++ I+ Sbjct 15 VTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVA 74 Query 65 DIGSAPARRMFSEHQ--YHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKDLR 122 DIGSAPARR+ + YH VCP + EDP+R+ YA KL K + ++I DL+ Sbjct 75 DIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEKGDGHLVSDRITDLK 134 Query 123 TVLDTPDA--ETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGF 179 VL+ PD ET S+C ++DV+C ++A+ +V QDVY ++AP TIY QA KG R +YWIGF Sbjct 135 DVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGF 194 Query 180 DTTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSR 239 + F AMAGS+P Y+ NW+D VL A+N+ LC + LSE R K L P Sbjct 195 EPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSGE 254 Query 240 VYFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITG 299 +++SVGST Y E R L+SWHLPS FH YTCRCDTVVSC GYVVKKITI GI G Sbjct 255 IHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGIVG 314 Query 300 ETVG--YAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQ 357 A +++ +G ++ K +DT+ E+VSFPV TYIPA ICDQMT + A + D Sbjct 315 RPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTADPVKYPDVV 374 Query 358 KLLVGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLT 417 KLLVGLNQRIV+NG T RN N+M N L+P+ A+ WA E + D+++E+ + T Sbjct 375 KLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDMEDEQDMYGVTSVTT 434 Query 418 YGCLW-AFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTT----SLPMSLRQKLKLA 472 + C+ A+ ++ H+FYR P + + VPA F+ +S+ T L L LK A Sbjct 435 WICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRASLSATYLNLPLKQLLLNTLKRA 494 Query 473 LQPKKEEKLLQVSEELVMEAKAAFEDAQEEARAEKLREALPPLVAD 518 ++P ++ L +E +A E +EE R + A P +AD Sbjct 495 IKP-GDQALADETEARAHDAAEVHELTEEEGRQQA---ANPSYIAD 536 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Pepper mild mottle virus (strain Japan)] Sequence ID: P89657.1 Length: 1612 Range 1: 64 to 155 Score:43.5 bits(101), Expect:0.004, Method:Compositional matrix adjust., Identities:27/92(29%), Positives:41/92(44%), Gaps:8/92(8%) Query 22 KSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILDIGSAPARRMFSEHQY- 80 K++P+F++ H+ A L + + +++P +T DIG A MF Y Sbjct 64 KAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYGSTTYDIGGNFAAHMFKGRDYV 123 Query 81 HCVCP-------MRSPEDPDRMMKYASKLAEK 105 HC P MR D + Y SKLA+K Sbjct 124 HCCMPNMDLRDVMRHNAQKDSIELYLSKLAQK 155 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Pepper mild mottle virus (strain Spain)] Sequence ID: P29098.2 Length: 1612 Range 1: 64 to 155 Score:43.5 bits(101), Expect:0.004, Method:Compositional matrix adjust., Identities:27/92(29%), Positives:41/92(44%), Gaps:8/92(8%) Query 22 KSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILDIGSAPARRMFSEHQY- 80 K++P+F++ H+ A L + + +++P +T DIG A MF Y Sbjct 64 KAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYGSTTYDIGGNFAAHMFKGRDYV 123 Query 81 HCVCP-------MRSPEDPDRMMKYASKLAEK 105 HC P MR D + Y SKLA+K Sbjct 124 HCCMPNMDLRDVMRHNAQKDSIELYLSKLAQK 155 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Obuda pepper virus] Sequence ID: P90211.1 Length: 1616 Range 1: 45 to 155 Score:36.6 bits(83), Expect:0.61, Method:Compositional matrix adjust., Identities:24/111(22%), Positives:44/111(39%), Gaps:8/111(7%) Query 3 KPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTAT 62 +P +N + + +++P+F++ H+ A L + + ++VP + Sbjct 45 RPKINFSKSINEEQTLIVSQAYPEFQITFYNTQLAVHSLAAGLRSLELEYLMMQVPYGSL 104 Query 63 ILDIGSAPARRMFSEHQY-HCVCP-------MRSPEDPDRMMKYASKLAEK 105 DIG A +F Y HC P MR D + Y S+L + Sbjct 105 TYDIGGNFAAHLFKGRDYVHCCMPNLDLRDIMRHENQKDSVATYLSRLKAR 155 >RecName: Full=Threonine--tRNA ligase; AltName: Full=Threonyl-tRNA synthetase; Short=ThrRS [Pseudomonas stutzeri A1501] Sequence ID: A4VM22.1 Length: 640 Range 1: 58 to 273 Score:36.6 bits(83), Expect:0.65, Method:Compositional matrix adjust., Identities:58/236(25%), Positives:86/236(36%), Gaps:38/236(16%) Query 32 QQVTPNDHANARAFSHLASKLIELEVPTTATILDIGSAPARRMFSEHQYHCVCPMR--SP 89 Q +TP D H + L+ V + P + E Y+ + R +P Sbjct 58 QIITPKDEEGLEIIRHSCAHLVGHAVKQLYPNAKMVIGP---VIDEGFYYDIAIDRPFTP 114 Query 90 EDPDRMMKYASKLAEKACKITNK------------NLHEKIKDLRTVLDTPDAETPSLCF 137 ED + K ++L +K + K + E K LR V D PD + L + Sbjct 115 EDMAAIEKRMAELIDKDYDVIKKVTPRAEVIEVFTSRGEDYK-LRLVDDMPDEQAMGLYY 173 Query 138 HNDVTCNMRAEYSVMQDVYINAPGTIYHQAMKGVRT--LYWIGFDTTQFMFSAMAGSYPA 195 H + R + P T + +A K R YW G D+ + Sbjct 174 HEEYVDMCRGPH---------VPNTRFLKAFKLTRISGAYWRG-DSKNEQLQRI------ 217 Query 196 YNTNWADEKVLEARNIGL-CSTKLSEGRTGK-LSIMRKKELKPGSRVYFSVGSTLY 249 Y T WAD+K L A + + K R GK L + +E PG + G TLY Sbjct 218 YGTAWADKKQLAAYIQRIEEAEKRDHRRIGKQLDLFHTQEEAPGMVFWHPAGWTLY 273 >RecName: Full=Replicase large subunit; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=Methyltransferase/RNA helicase [Potato mop-top virus Sw] Sequence ID: Q9QBU0.3 Length: 1812 Range 1: 69 to 147 Score:36.6 bits(83), Expect:0.67, Method:Compositional matrix adjust., Identities:23/79(29%), Positives:31/79(39%), Gaps:2/79(2%) Query 20 LQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILDIGSAPARRMFSEHQ 79 L + FP+ VV V H+ A A + + +I P I DIG A + Sbjct 69 LAELFPERRVVTSSVHRGTHSMAAAMRKIETDVIFTSFPKNGVIYDIGGNWATHAKRDDG 128 Query 80 --YHCVCPMRSPEDPDRMM 96 HC CP+ D R M Sbjct 129 GFVHCCCPILDFRDAQRKM 147 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mild green mosaic virus] Sequence ID: P18339.2 Length: 1609 Range 1: 45 to 153 Score:36.2 bits(82), Expect:0.99, Method:Compositional matrix adjust., Identities:26/109(24%), Positives:43/109(39%), Gaps:8/109(7%) Query 3 KPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTAT 62 +P VN + + ++P+F++ H+ A L + + L+VP + Sbjct 45 RPKVNFSKTISEEQTLLVSNAYPEFQITFYNTQNAVHSLAGGLRALELEYLMLQVPYGSP 104 Query 63 ILDIGSAPARRMFSEHQY-HCVCP-------MRSPEDPDRMMKYASKLA 103 DIG A +F Y HC P MR D + Y S+L+ Sbjct 105 TYDIGGNFAAHLFKGRDYVHCCMPNLDIRDIMRHEGQKDSIEMYLSRLS 153 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tomato brown rugose fruit virus Tom1-Jo] Sequence ID: A0A0S2T050.1 Length: 1615 Range 1: 64 to 206 Score:35.4 bits(80), Expect:1.4, Method:Compositional matrix adjust., Identities:34/147(23%), Positives:57/147(38%), Gaps:16/147(10%) Query 22 KSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILDIGSAPARRMFSEHQY- 80 +++P+F++ H+ A L + + +++P + DIG A +F Y Sbjct 64 RAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYGSLTYDIGGNFASHLFKGRAYV 123 Query 81 HCVCP-------MRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKDLRTVLDTPDA--- 130 HC P MR D + Y S+L E+ K+ N ++ D +TPD Sbjct 124 HCCMPNLDVRDIMRHEGQKDSIELYLSRL-ERGNKVV-PNFQKEAFD--RYAETPDEVVC 179 Query 131 -ETPSLCFHNDVTCNMRAEYSVMQDVY 156 T C H V R + +Y Sbjct 180 HSTFQTCTHQQVENTGRVYAIALHSIY 206 >RecName: Full=Threonine--tRNA ligase; AltName: Full=Threonyl-tRNA synthetase; Short=ThrRS [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Sequence ID: Q5ZS05.2 Length: 637 Range 1: 113 to 275 Score:35.0 bits(79), Expect:2.0, Method:Compositional matrix adjust., Identities:48/179(27%), Positives:72/179(40%), Gaps:31/179(17%) Query 88 SPEDPDRMMKYASKLAEKACKITNKNL--HEKI---KDL------RTVLDTPDAETPSLC 136 +P+D + +LA+ IT + L +E I KDL + + D P+ E SL Sbjct 113 TPDDLSLIEAKMHELAKANLSITRRELPRNEAIQYFKDLGEEYKAKIIADIPENEALSLY 172 Query 137 FHNDVTCNMRAEYSVMQDVYINAPGTIYHQAMK--GVRTLYWIGFDTTQFMFSAMAGSYP 194 D R + P T + +A K V YW G D+ M + Sbjct 173 RQGDFEDLCRGPH---------VPSTGFLKAFKLTKVAGAYWRG-DSNNEMLQRI----- 217 Query 195 AYNTNWADEKVLEARNIGLCSTKLSEGRT-GK-LSIMRKKELKPGSRVYFSVGSTLYPE 251 Y T WAD+K LE L + + R GK L + +++ PG + G T+Y E Sbjct 218 -YGTAWADKKSLEEYLFRLEEAEKRDHRKLGKALDLFHFQDIAPGMVFWHPKGWTIYQE 275 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tomato mosaic virus (strain S-1)] Sequence ID: Q9YKD6.1 Length: 1616 Range 1: 64 to 152 Score:35.0 bits(79), Expect:2.2, Method:Compositional matrix adjust., Identities:22/89(25%), Positives:37/89(41%), Gaps:8/89(8%) Query 22 KSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILDIGSAPARRMFSEHQY- 80 K++P+F++ H+ A L + + +++P + DIG A +F Y Sbjct 64 KAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYGSLTYDIGGNFASHLFKGRAYV 123 Query 81 HCVCP-------MRSPEDPDRMMKYASKL 102 HC P MR D + Y S+L Sbjct 124 HCCMPNLDVRDIMRHEGQKDSIELYLSRL 152 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tomato mosaic virus (strain Kazakh K2)] Sequence ID: P89676.1 Length: 1616 Range 1: 64 to 152 Score:34.7 bits(78), Expect:2.4, Method:Compositional matrix adjust., Identities:22/89(25%), Positives:37/89(41%), Gaps:8/89(8%) Query 22 KSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILDIGSAPARRMFSEHQY- 80 K++P+F++ H+ A L + + +++P + DIG A +F Y Sbjct 64 KAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYGSLTYDIGGNFASHLFKGRAYV 123 Query 81 HCVCP-------MRSPEDPDRMMKYASKL 102 HC P MR D + Y S+L Sbjct 124 HCCMPNLDVRDIMRHEGQKDSIELYLSRL 152 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tomato mosaic virus (strain Kazakh K1)] Sequence ID: Q9Q1T8.2 Length: 1616 Range 1: 64 to 152 Score:34.7 bits(78), Expect:2.4, Method:Compositional matrix adjust., Identities:22/89(25%), Positives:37/89(41%), Gaps:8/89(8%) Query 22 KSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILDIGSAPARRMFSEHQY- 80 K++P+F++ H+ A L + + +++P + DIG A +F Y Sbjct 64 KAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYGSLTYDIGGNFASHLFKGRAYV 123 Query 81 HCVCP-------MRSPEDPDRMMKYASKL 102 HC P MR D + Y S+L Sbjct 124 HCCMPNLDVRDIMRHEGQKDSIELYLSRL 152 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mosaic virus strain tomato/L] Sequence ID: P03587.2 Length: 1616 Range 1: 64 to 152 Score:34.7 bits(78), Expect:2.4, Method:Compositional matrix adjust., Identities:22/89(25%), Positives:37/89(41%), Gaps:8/89(8%) Query 22 KSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILDIGSAPARRMFSEHQY- 80 K++P+F++ H+ A L + + +++P + DIG A +F Y Sbjct 64 KAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYGSLTYDIGGNFASHLFKGRAYV 123 Query 81 HCVCP-------MRSPEDPDRMMKYASKL 102 HC P MR D + Y S+L Sbjct 124 HCCMPNLDVRDIMRHEGQKDSIELYLSRL 152 >RecName: Full=Alpha-A protein; Includes: RecName: Full=Methyltransferase; Includes: RecName: Full=NTPase/helicase [Barley stripe mosaic virus] Sequence ID: P17595.1 Length: 1139 Range 1: 71 to 149 Score:34.7 bits(78), Expect:2.5, Method:Compositional matrix adjust., Identities:21/79(27%), Positives:37/79(46%), Gaps:3/79(3%) Query 20 LQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTAT-ILDIGSAPARRM--FS 76 L ++P++ V + H+ A F L ++ + VP T + DIG M + Sbjct 71 LINAYPEYAVSSSACESGTHSMAACFRFLETEYLLDMVPMKETFVYDIGGNWFSHMKFRA 130 Query 77 EHQYHCVCPMRSPEDPDRM 95 + + HC CP+ S D +R+ Sbjct 131 DREIHCCCPILSMRDSERL 149 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mosaic virus (vulgare)] Sequence ID: P03586.2 Length: 1616 Range 1: 64 to 161 Score:34.3 bits(77), Expect:3.4, Method:Compositional matrix adjust., Identities:22/98(22%), Positives:39/98(39%), Gaps:8/98(8%) Query 22 KSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILDIGSAPARRMFSEHQY- 80 +++P+F++ H+ A L + + +++P + DIG A +F Y Sbjct 64 RAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYGSLTYDIGGNFASHLFKGRAYV 123 Query 81 HCVCP-------MRSPEDPDRMMKYASKLAEKACKITN 111 HC P MR D + Y S+L + N Sbjct 124 HCCMPNLDVRDIMRHEGQKDSIELYLSRLERGGKTVPN 161 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mosaic virus strain Korean] Sequence ID: P30738.2 Length: 1616 Range 1: 64 to 161 Score:34.3 bits(77), Expect:3.5, Method:Compositional matrix adjust., Identities:22/98(22%), Positives:39/98(39%), Gaps:8/98(8%) Query 22 KSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILDIGSAPARRMFSEHQY- 80 +++P+F++ H+ A L + + +++P + DIG A +F Y Sbjct 64 RAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYGSLTYDIGGNFASHLFKGRAYV 123 Query 81 HCVCP-------MRSPEDPDRMMKYASKLAEKACKITN 111 HC P MR D + Y S+L + N Sbjct 124 HCCMPNLDVRDIMRHEGQKDSIELYLSRLERGGKTVPN 161 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mosaic virus strain OM] Sequence ID: O93058.1 Length: 1616 Range 1: 64 to 161 Score:34.3 bits(77), Expect:3.5, Method:Compositional matrix adjust., Identities:22/98(22%), Positives:39/98(39%), Gaps:8/98(8%) Query 22 KSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILDIGSAPARRMFSEHQY- 80 +++P+F++ H+ A L + + +++P + DIG A +F Y Sbjct 64 RAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYGSLTYDIGGNFASHLFKGRAYV 123 Query 81 HCVCP-------MRSPEDPDRMMKYASKLAEKACKITN 111 HC P MR D + Y S+L + N Sbjct 124 HCCMPNLDVRDIMRHEGQKDSIELYLSRLERGGKTVPN 161 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mosaic virus strain B395A] Sequence ID: Q9YQ08.1 Length: 1616 Range 1: 64 to 161 Score:34.3 bits(77), Expect:3.7, Method:Compositional matrix adjust., Identities:22/98(22%), Positives:39/98(39%), Gaps:8/98(8%) Query 22 KSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILDIGSAPARRMFSEHQY- 80 +++P+F++ H+ A L + + +++P + DIG A +F Y Sbjct 64 RAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYGSLTYDIGGNFASHLFKGRAYV 123 Query 81 HCVCP-------MRSPEDPDRMMKYASKLAEKACKITN 111 HC P MR D + Y S+L + N Sbjct 124 HCCMPNLDVRDIMRHEGQKDSIELYLSRLERGGKTVPN 161 >RecName: Full=Threonine--tRNA ligase; AltName: Full=Threonyl-tRNA synthetase; Short=ThrRS [Pseudomonas putida W619] Sequence ID: B1J6U4.1 Length: 640 Range 1: 58 to 273 Score:33.9 bits(76), Expect:3.9, Method:Compositional matrix adjust., Identities:55/235(23%), Positives:85/235(36%), Gaps:36/235(15%) Query 32 QQVTPNDHANARAFSHLASKLIELEVPTTATILDIGSAPARRMFSEHQYHCVCPMRS--P 89 Q +TP D H + L+ V + P + E Y+ + RS P Sbjct 58 QIITPKDEEGLEIIRHSCAHLVGHAVKQLYPTAKMVIGP---VIDEGFYYDIAYERSFTP 114 Query 90 EDPDRMMKYASKLAEKACKITNKN---------LHEKIKD--LRTVLDTPDAETPSLCFH 138 ED + K +L EK + K + +D LR V D PD + L +H Sbjct 115 EDLAAIEKRMQQLIEKDYDVIKKMTPRAEVIDVFKARGEDYKLRLVEDMPDEQAMGLYYH 174 Query 139 NDVTCNMRAEYSVMQDVYINAPGTIYHQAMK--GVRTLYWIGFDTTQFMFSAMAGSYPAY 196 + R + P T + +A K + YW G + + Y Sbjct 175 EEYVDMCRGPH---------VPNTRFLKAFKLTKLSGAYWRGDAKNEQL-------QRVY 218 Query 197 NTNWADEKVLEARNIGLCSTKLSEGR-TGK-LSIMRKKELKPGSRVYFSVGSTLY 249 T WAD+K L A + + + R GK L + +E PG + + G T+Y Sbjct 219 GTAWADKKQLAAYIQRIEEAEKRDHRKIGKQLDLFHLQEEAPGMVFWHANGWTVY 273 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Odontoglossum ringspot virus (isolate Singapore 1)] Sequence ID: Q84133.2 Length: 1612 Range 1: 45 to 137 Score:34.3 bits(77), Expect:3.9, Method:Compositional matrix adjust., Identities:20/93(22%), Positives:37/93(39%), Gaps:1/93(1%) Query 3 KPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTAT 62 +P VN ++Q ++P+FE+ H+ A L + + +++P + Sbjct 45 RPRVNFSKVISQEQIIQATNAYPEFEITFYNTQLAVHSMAGGLRALELEYLMMQIPFGSI 104 Query 63 ILDIGSAPARRMFSEHQY-HCVCPMRSPEDPDR 94 DIG + ++ Y HC P D R Sbjct 105 TYDIGGNFSAHLYKGRDYVHCCMPNLDIRDVAR 137 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Odontoglossum ringspot virus (isolate Korean Cy)] Sequence ID: P89659.2 Length: 1612 Range 1: 45 to 137 Score:34.3 bits(77), Expect:3.9, Method:Compositional matrix adjust., Identities:20/93(22%), Positives:37/93(39%), Gaps:1/93(1%) Query 3 KPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTAT 62 +P VN ++Q ++P+FE+ H+ A L + + +++P + Sbjct 45 RPKVNFSKVISQEQIIQATNAYPEFEITFYNTQLAVHSMAGGLRALELEYLMMQIPFGSI 104 Query 63 ILDIGSAPARRMFSEHQY-HCVCPMRSPEDPDR 94 DIG + ++ Y HC P D R Sbjct 105 TYDIGGNFSAHLYKGRDYVHCCMPNLDIRDVAR 137 >RecName: Full=Threonine--tRNA ligase; AltName: Full=Threonyl-tRNA synthetase; Short=ThrRS [Pseudomonas mendocina ymp] Sequence ID: A4XTS1.1 Length: 640 Range 1: 157 to 273 Score:33.9 bits(76), Expect:4.3, Method:Compositional matrix adjust., Identities:37/133(28%), Positives:52/133(39%), Gaps:20/133(15%) Query 121 LRTVLDTPDAETPSLCFHNDVTCNMRAEYSVMQDVYINAPGTIYHQAMKGVRT--LYWIG 178 LR + D PD + L FH + R + P T + +A K R YW G Sbjct 157 LRLIDDMPDEKAMGLYFHEEYVDMCRGPH---------VPNTRFLKAFKLTRISGAYWRG 207 Query 179 FDTTQFMFSAMAGSYPAYNTNWADEKVLEARNIGL-CSTKLSEGRTGK-LSIMRKKELKP 236 D+ + Y T WAD+K L A + + K R GK L + +E P Sbjct 208 -DSKNEQLQRI------YGTAWADKKQLAAYIQRIEEAEKRDHRRIGKQLDLFHLQEEAP 260 Query 237 GSRVYFSVGSTLY 249 G + G T+Y Sbjct 261 GMVFWHPNGWTVY 273 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mosaic virus strain Rakkyo] Sequence ID: Q98745.1 Length: 1616 Range 1: 64 to 152 Score:33.9 bits(76), Expect:4.3, Method:Compositional matrix adjust., Identities:21/89(24%), Positives:37/89(41%), Gaps:8/89(8%) Query 22 KSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILDIGSAPARRMFSEHQY- 80 +++P+F++ H+ A L + + +++P + DIG A +F Y Sbjct 64 RAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYGSLTYDIGGNFASHLFKGRAYV 123 Query 81 HCVCP-------MRSPEDPDRMMKYASKL 102 HC P MR D + Y S+L Sbjct 124 HCCMPNLDVRDIMRHEGQKDSIELYLSRL 152 >RecName: Full=Threonine--tRNA ligase; AltName: Full=Threonyl-tRNA synthetase; Short=ThrRS [Legionella pneumophila str. Corby] Sequence ID: A5IAK9.1 Length: 637 Range 1: 113 to 275 Score:33.5 bits(75), Expect:5.1, Method:Compositional matrix adjust., Identities:45/179(25%), Positives:71/179(39%), Gaps:31/179(17%) Query 88 SPEDPDRMMKYASKLAEKACKITNKNL--HEKIKDLRT---------VLDTPDAETPSLC 136 +P+D + +LA+ IT + L +E I+ ++ + D P+ E SL Sbjct 113 TPDDLSLIEAKMHELAKANLSITRRELPRNEAIQYFKSLGEEYKAKIIADIPENEALSLY 172 Query 137 FHNDVTCNMRAEYSVMQDVYINAPGTIYHQAMK--GVRTLYWIGFDTTQFMFSAMAGSYP 194 D R + P T + +A K V YW G D+ M + Sbjct 173 RQGDFEDLCRGPH---------VPSTGFLKAFKLTKVAGAYWRG-DSNNEMLQRI----- 217 Query 195 AYNTNWADEKVLEARNIGLCSTKLSEGRT-GK-LSIMRKKELKPGSRVYFSVGSTLYPE 251 Y T WAD+K LE L + + R GK L + +++ PG + G T+Y E Sbjct 218 -YGTAWADKKSLEEYLFRLEEAEKRDHRKLGKALDLFHFQDIAPGMVFWHPKGWTIYQE 275 >RecName: Full=Threonine--tRNA ligase; AltName: Full=Threonyl-tRNA synthetase; Short=ThrRS [Legionella pneumophila str. Lens] Sequence ID: Q5WT82.1 Length: 637 Range 1: 149 to 275 Score:33.5 bits(75), Expect:6.0, Method:Compositional matrix adjust., Identities:40/144(28%), Positives:59/144(40%), Gaps:21/144(14%) Query 112 KNLHEKIKDLRTVLDTPDAETPSLCFHNDVTCNMRAEYSVMQDVYINAPGTIYHQAMK-- 169 K L E+ K + + D P+ E+ SL D R + P T + +A K Sbjct 149 KGLGEEYK-AKIIADIPENESLSLYRQGDFEDLCRGPH---------VPSTGFLKAFKLT 198 Query 170 GVRTLYWIGFDTTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRT-GK-LS 227 V YW G D+ M + Y T WAD+K LE L + + R GK L Sbjct 199 KVAGAYWRG-DSNNEMLQRI------YGTAWADKKSLEEYLYRLEEAEKRDHRKLGKALD 251 Query 228 IMRKKELKPGSRVYFSVGSTLYPE 251 + +++ PG + G T+Y E Sbjct 252 LFHFQDIAPGMVFWHPKGWTIYQE 275 >RecName: Full=NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial; AltName: Full=Complex I-42kD; Short=CI-42kD; AltName: Full=NADH-ubiquinone oxidoreductase 42 kDa subunit; Flags: Precursor [Drosophila melanogaster] Sequence ID: P91929.2 Length: 407 Range 1: 320 to 403 Score:33.1 bits(74), Expect:6.3, Method:Compositional matrix adjust., Identities:29/120(24%), Positives:42/120(35%), Gaps:36/120(30%) Query 94 RMMKYASKLAEKACKITNKNLHEKIKDLRTVLDTPDAETPSLCFHNDVTCNMRAEYSVMQ 153 +M+ + L + C+ K HEK DL + P + P L D + V + Sbjct 320 KMLDWRFPLEAEWCEARIKYCHEK-PDLMNYFNVPRFDVPELVRSAD-------DGKVWR 371 Query 154 DVYINAPGTIYHQAMKGVRTLYWIGFDTTQFMFSAMAGSYPAYNTNWADEKVLEARNIGL 213 DV+ NAPG Y P YN + DE +L IG+ Sbjct 372 DVWFNAPGMKYR----------------------------PGYNADMGDEGLLTKTKIGI 403 >RecName: Full=Threonine--tRNA ligase; AltName: Full=Threonyl-tRNA synthetase; Short=ThrRS [Legionella pneumophila str. Paris] Sequence ID: Q5X1H3.1 Length: 637 Range 1: 149 to 275 Score:33.1 bits(74), Expect:6.4, Method:Compositional matrix adjust., Identities:40/144(28%), Positives:58/144(40%), Gaps:21/144(14%) Query 112 KNLHEKIKDLRTVLDTPDAETPSLCFHNDVTCNMRAEYSVMQDVYINAPGTIYHQAMK-- 169 K L E+ K + + D P+ E SL D R + P T + +A K Sbjct 149 KGLGEEYK-AKIIADIPENEALSLYRQGDFEDLCRGPH---------VPSTGFLKAFKLT 198 Query 170 GVRTLYWIGFDTTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRT-GK-LS 227 V YW G D+ M + Y T WAD+K LE L + + R GK L Sbjct 199 KVAGAYWRG-DSNNEMLQRI------YGTAWADKKSLEEYLFRLEEAEKRDHRKLGKALD 251 Query 228 IMRKKELKPGSRVYFSVGSTLYPE 251 + +++ PG + G T+Y E Sbjct 252 LFHFQDIAPGMVFWHPKGWTIYQE 275 >RecName: Full=Threonine--tRNA ligase; AltName: Full=Threonyl-tRNA synthetase; Short=ThrRS [Colwellia psychrerythraea 34H] Sequence ID: Q480A9.1 Length: 636 Range 1: 194 to 276 Score:33.1 bits(74), Expect:7.7, Method:Compositional matrix adjust., Identities:27/90(30%), Positives:41/90(45%), Gaps:9/90(10%) Query 164 YHQAMKGVRTLYWIGFDTTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGR- 222 +H + V YW G D+ M + Y T WAD+K L+A + L + + R Sbjct 194 HHFKLMKVAGAYWRG-DSDNKMLQRI------YGTAWADKKQLKAYIVRLAEAEKRDHRK 246 Query 223 TGK-LSIMRKKELKPGSRVYFSVGSTLYPE 251 GK L + +E PG + + G T+Y E Sbjct 247 IGKTLDLFHWQEEAPGMVFWHNDGWTIYTE 276