RID: B1KFTK42016 Job Title:Protein Sequence Program: BLASTP Query: None ID: lcl|Query_52532(amino acid) Length: 540 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sindbis virus NA 11034 1136 1136 100% 0.0 100.00 2513 P03317.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Ockelbo virus NA 31699 1111 1111 100% 0.0 97.96 2515 P27283.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Aura virus NA 44158 858 858 100% 0.0 75.74 2499 Q86924.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Getah virus NA 59300 723 723 99% 0.0 64.37 2467 Q5Y389.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sagiyama virus NA 59303 723 723 99% 0.0 64.37 2467 Q9JGL0.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Semliki Fore... NA 11033 722 722 99% 0.0 63.62 2432 P08411.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Ross river v... NA 11031 717 717 99% 0.0 64.11 2480 P13887.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... O'nyong-nyon... NA 374989 704 704 99% 0.0 62.27 2513 O90368.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... O'nyong-nyon... NA 11028 703 703 99% 0.0 62.64 2514 P13886.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Igbo Ora virus NA 79899 699 699 99% 0.0 62.08 2513 O90370.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Chikungunya ... NA 371095 690 690 99% 0.0 62.50 2474 Q5XXP4.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Mayaro virus... NA 374990 687 687 88% 0.0 64.64 2437 Q8QZ73.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Barmah Fores... NA 11020 685 685 95% 0.0 61.51 2411 P87515.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Chikungunya ... NA 371094 679 679 99% 0.0 60.07 2474 Q8JUX6.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36385 674 674 95% 0.0 60.69 2493 P36328.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 11038 674 674 95% 0.0 60.89 2493 P27282.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36382 672 672 95% 0.0 60.50 2485 P36327.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36384 660 660 98% 0.0 58.85 2499 Q9WJC7.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374596 657 657 98% 0.0 60.52 2471 Q306W6.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 376610 657 657 98% 0.0 58.66 2497 Q8V294.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Western equi... NA 11039 654 654 87% 0.0 63.87 2467 P13896.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374597 652 652 98% 0.0 60.34 2474 Q306W8.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374598 649 649 98% 0.0 59.96 2494 Q4QXJ8.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Salmon pancr... NA 84589 424 424 95% 3e-132 44.30 2601 Q8JJX1.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sleeping dis... NA 78540 422 422 95% 1e-131 44.11 2593 Q8QL53.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Pepper mild ... NA 138663 43.5 43.5 15% 2e-04 29.35 1612 P89657.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Pepper mild ... NA 31745 43.5 43.5 15% 2e-04 29.35 1612 P29098.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Obuda pepper... NA 31749 36.6 36.6 19% 0.026 21.62 1616 P90211.1 RecName: Full=Replicase large subunit; AltName:... Potato mop-t... NA 652839 36.6 36.6 14% 0.028 29.11 1812 Q9QBU0.3 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mild... NA 12241 36.2 36.2 18% 0.041 23.85 1609 P18339.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tomato brown... NA 2654645 35.4 35.4 25% 0.057 23.13 1615 A0A0S2T050.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tomato mosai... NA 138314 35.0 35.0 15% 0.093 24.72 1616 Q9YKD6.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tomato mosai... NA 138312 34.7 34.7 15% 0.099 24.72 1616 P89676.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tomato mosai... NA 138311 34.7 34.7 15% 0.100 24.72 1616 Q9Q1T8.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mosa... NA 12252 34.7 34.7 15% 0.100 24.72 1616 P03587.2 RecName: Full=Alpha-A protein; Includes: RecName:... Barley strip... NA 12327 34.7 34.7 14% 0.10 26.58 1139 P17595.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mosa... NA 12243 34.3 34.3 16% 0.14 22.45 1616 P03586.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mosa... NA 31746 34.3 34.3 16% 0.15 22.45 1616 P30738.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mosa... NA 12251 34.3 34.3 16% 0.15 22.45 1616 O93058.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mosa... NA 138309 34.3 34.3 16% 0.15 22.45 1616 Q9YQ08.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Odontoglossu... NA 138662 34.3 34.3 17% 0.16 21.51 1612 Q84133.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Odontoglossu... NA 138661 34.3 34.3 17% 0.16 21.51 1612 P89659.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mosa... NA 138310 33.9 33.9 15% 0.18 23.60 1616 Q98745.1 RecName: Full=Replicase large subunit; AltName: Full=182 kDa... Youcai mosai... NA 228578 32.7 32.7 13% 0.48 26.03 1597 Q66220.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Sunn-hemp mo... NA 12240 32.0 32.0 17% 0.70 23.16 1629 P89202.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Turnip vein-... NA 29272 32.0 32.0 13% 0.77 24.66 1601 Q88920.1 RecName: Full=Replication protein 1a; Includes: RecName:... Olive latent... NA 650489 31.6 31.6 26% 0.88 23.29 908 Q83943.1 RecName: Full=Uncharacterized 7.6 kDa protein [Vaccinia virus... Vaccinia vir... NA 10249 27.7 27.7 4% 1.9 43.48 67 P20549.1 RecName: Full=Replication protein 1a; Includes: RecName:... Peanut stunt... NA 12314 30.4 30.4 50% 2.1 21.50 1005 P28726.1 RecName: Full=Replicase large subunit; AltName: Full=186 kDa... Cucumber gre... NA 12236 30.4 30.4 15% 2.4 21.69 1648 P69514.1 RecName: Full=Replication protein 1a; Includes: RecName:... Cucumber mos... NA 117114 30.0 30.0 16% 2.5 21.74 993 Q66121.1 RecName: Full=Replicase large subunit; AltName:... Peanut clump... NA 652837 29.6 29.6 13% 4.0 24.32 1672 Q84687.2 RecName: Full=Replication protein 1a; Includes: RecName:... Cucumber mos... NA 117124 29.6 29.6 16% 4.1 21.74 993 O40976.1 RecName: Full=Initiator protein NS1; Short=NS1; AltName:... Feline panle... NA 10786 28.9 28.9 6% 5.4 29.73 392 P06431.1 RecName: Full=Replicase polyprotein 1ab; Contains: RecName:... Beet yellows... NA 478555 28.9 28.9 25% 7.1 23.40 3094 Q08534.2 RecName: Full=Initiator protein NS1; Short=NS1; AltName:... Mink enterit... NA 10793 28.5 28.5 6% 7.6 29.73 668 P27438.1 RecName: Full=Replication protein 1a; Includes: RecName:... Alfalfa mosa... NA 12322 28.5 28.5 14% 7.9 25.64 1126 P03589.1 RecName: Full=Initiator protein NS1; Short=NS1; AltName:... Canine parvo... NA 10791 28.5 28.5 6% 8.6 29.73 668 P12929.1 Alignments: >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; AltName: Full=p270 nonstructural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sindbis virus] Sequence ID: P03317.2 Length: 2513 Range 1: 1 to 540 Score:1136 bits(2938), Expect:0.0, Method:Compositional matrix adjust., Identities:540/540(100%), Positives:540/540(100%), Gaps:0/540(0%) Query 1 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTT 60 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTT Sbjct 1 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTT 60 Query 61 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD 120 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD Sbjct 61 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD 120 Query 121 LRTVLDTPDAETPSLCFHNDVTCNMRAEYSVMQDVYINAPGTIYHQAMKGVRTLYWIGFD 180 LRTVLDTPDAETPSLCFHNDVTCNMRAEYSVMQDVYINAPGTIYHQAMKGVRTLYWIGFD Sbjct 121 LRTVLDTPDAETPSLCFHNDVTCNMRAEYSVMQDVYINAPGTIYHQAMKGVRTLYWIGFD 180 Query 181 TTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRV 240 TTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRV Sbjct 181 TTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRV 240 Query 241 YFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITGE 300 YFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITGE Sbjct 241 YFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITGE 300 Query 301 TVGYAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLL 360 TVGYAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLL Sbjct 301 TVGYAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLL 360 Query 361 VGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYGC 420 VGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYGC Sbjct 361 VGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYGC 420 Query 421 LWAFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEEK 480 LWAFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEEK Sbjct 421 LWAFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEEK 480 Query 481 LLQVSEELVMEAKAAFEDAQEEARAEKLREALPPLVADKGIEAAAEVVCEVEGLQADIGA 540 LLQVSEELVMEAKAAFEDAQEEARAEKLREALPPLVADKGIEAAAEVVCEVEGLQADIGA Sbjct 481 LLQVSEELVMEAKAAFEDAQEEARAEKLREALPPLVADKGIEAAAEVVCEVEGLQADIGA 540 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ockelbo virus] Sequence ID: P27283.2 Length: 2515 Range 1: 1 to 540 Score:1111 bits(2874), Expect:0.0, Method:Compositional matrix adjust., Identities:529/540(98%), Positives:533/540(98%), Gaps:0/540(0%) Query 1 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTT 60 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQ TPNDHANARAFSHLASKLIELEVPTT Sbjct 1 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQATPNDHANARAFSHLASKLIELEVPTT 60 Query 61 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD 120 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD Sbjct 61 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD 120 Query 121 LRTVLDTPDAETPSLCFHNDVTCNMRAEYSVMQDVYINAPGTIYHQAMKGVRTLYWIGFD 180 LRTVLDTPDAETPSLCFHNDVTCN RAEYSVMQDVYINAPGTIYHQAMKGVRTLYWIGFD Sbjct 121 LRTVLDTPDAETPSLCFHNDVTCNTRAEYSVMQDVYINAPGTIYHQAMKGVRTLYWIGFD 180 Query 181 TTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRV 240 TTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRV Sbjct 181 TTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRV 240 Query 241 YFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITGE 300 YFSVGSTLYPEHRASLQSWHLPSVFHL GKQSYTCRCDTVVSCEGYVVKKITISPGITGE Sbjct 241 YFSVGSTLYPEHRASLQSWHLPSVFHLKGKQSYTCRCDTVVSCEGYVVKKITISPGITGE 300 Query 301 TVGYAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLL 360 TVGYAVT+NSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLL Sbjct 301 TVGYAVTNNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLL 360 Query 361 VGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYGC 420 VGLNQRIVING+TNRNTNTMQNYLLP IAQGFSKWAKERK+DLDNEKMLGTRERKLTYGC Sbjct 361 VGLNQRIVINGKTNRNTNTMQNYLLPTIAQGFSKWAKERKEDLDNEKMLGTRERKLTYGC 420 Query 421 LWAFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEEK 480 LWAFRTKKVHSFYRPPGTQT VKVPASFSAFPMSSVWTTSLPMSLRQK+KLALQPKKEEK Sbjct 421 LWAFRTKKVHSFYRPPGTQTSVKVPASFSAFPMSSVWTTSLPMSLRQKMKLALQPKKEEK 480 Query 481 LLQVSEELVMEAKAAFEDAQEEARAEKLREALPPLVADKGIEAAAEVVCEVEGLQADIGA 540 LLQV EELVMEAKAAFEDAQEEARAEKLREALPPLVADK IEAAAEVVCEVEGLQADIGA Sbjct 481 LLQVPEELVMEAKAAFEDAQEEARAEKLREALPPLVADKDIEAAAEVVCEVEGLQADIGA 540 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Aura virus] Sequence ID: Q86924.3 Length: 2499 Range 1: 1 to 539 Score:858 bits(2218), Expect:0.0, Method:Compositional matrix adjust., Identities:409/540(76%), Positives:462/540(85%), Gaps:1/540(0%) Query 1 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTT 60 MEKP V+VDVDPQSPFV+QLQKSFPQFE+VAQQVTPNDHANARAFSHLASKLIE E+PT+ Sbjct 1 MEKPTVHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPTS 60 Query 61 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD 120 TILDIGSAPARRM+SEH+YHCVCPMRSPEDPDR+M YAS+LA+KA +ITNK LH+K+ D Sbjct 61 VTILDIGSAPARRMYSEHKYHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLAD 120 Query 121 LRTVLDTPDAETPSLCFHNDVTCNMRAEYSVMQDVYINAPGTIYHQAMKGVRTLYWIGFD 180 L++VL++PDAET ++CFHNDV C AE SVMQ+VYINAP TIYHQA+KGVR LYWIGFD Sbjct 121 LKSVLESPDAETGTICFHNDVICRTTAEVSVMQNVYINAPSTIYHQALKGVRKLYWIGFD 180 Query 181 TTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRV 240 TTQFMFS+MAGSYP+YNTNWADE+VLEARNIGLCSTKL EG GKLS RKK LKPG+ V Sbjct 181 TTQFMFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTNV 240 Query 241 YFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITGE 300 YFSVGSTLYPE+RA LQSWHLPSVFHL GKQS+TCRCDT V+CEGYVVKKITISPGITG Sbjct 241 YFSVGSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGITGR 300 Query 301 TVGYAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLL 360 Y VT+NSEGFLLCK+TDTVKGERVSFPVCTYIP +ICDQMTGI+ATDI P+DAQKLL Sbjct 301 VNRYTVTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDAQKLL 360 Query 361 VGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYGC 420 VGLNQRIV+NG+TNRNTNTMQNYLLP +A G SKWAKERK D +EK L RERKL +GC Sbjct 361 VGLNQRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKLAFGC 420 Query 421 LWAFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEEK 480 LWAF+TKK+HSFYRPPGTQT VKV A FSAFPMSSVWTTSLPMSLRQK+KL L K + Sbjct 421 LWAFKTKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTTSLPMSLRQKVKLLLVKKTNKP 480 Query 481 LLQVSEELVMEAKAAFEDAQEEARAEKLREALPPLVADKGIEAAAEVVCEVEGLQADIGA 540 ++ +++ V A+ A+ +A E A AE+ +ALPPL A +V CEV L D GA Sbjct 481 VVTITDTAVKNAQEAYNEAVETAEAEEKAKALPPL-KPTAPPVAEDVKCEVTDLVDDAGA 539 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Getah virus] Sequence ID: Q5Y389.3 Length: 2467 Range 1: 3 to 534 Score:723 bits(1867), Expect:0.0, Method:Compositional matrix adjust., Identities:345/536(64%), Positives:424/536(79%), Gaps:5/536(0%) Query 6 VNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILD 65 V VDV+ SPF+ LQK+FP FEV +QQVTPNDHANARAFSHLA+KLIE EVPT TILD Sbjct 3 VTVDVEADSPFLKALQKAFPAFEVESQQVTPNDHANARAFSHLATKLIEQEVPTGVTILD 62 Query 66 IGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKDLRTVL 125 +GSAPARR+ S+H YHC+CPM+S EDP+R+ YA KLA+ + + +KN+ KI DL+ V+ Sbjct 63 VGSAPARRLMSDHTYHCICPMKSAEDPERLANYARKLAKASGTVLDKNVSGKITDLQDVM 122 Query 126 DTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGFDTTQF 184 TPD E+P+ C H D TC RAE +V QDVY ++AP ++YHQA+KGVRT YWIGFDTT F Sbjct 123 ATPDLESPTFCLHTDETCRTRAEVAVYQDVYAVHAPTSLYHQAIKGVRTAYWIGFDTTPF 182 Query 185 MFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRVYFSV 244 MF A+AG+YPAY+TNWADE+VL+ARNIGLC+T LSEGR GKLSIMRKK L+P RV FSV Sbjct 183 MFEALAGAYPAYSTNWADEQVLQARNIGLCATGLSEGRRGKLSIMRKKCLRPSDRVMFSV 242 Query 245 GSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITGETVGY 304 GSTLY E R L+SWHLPSVFHL GK S+TCRCDTVVSCEGYVVKKITISPGI G+TV Y Sbjct 243 GSTLYTESRKLLRSWHLPSVFHLKGKNSFTCRCDTVVSCEGYVVKKITISPGIYGKTVDY 302 Query 305 AVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLLVGLN 364 AVTH++EGFL+CK+TDTV+GERVSFPVCTY+PATICDQMTGI+ATD++P+DAQKLLVGLN Sbjct 303 AVTHHAEGFLMCKITDTVRGERVSFPVCTYVPATICDQMTGILATDVTPEDAQKLLVGLN 362 Query 365 QRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYGCLWAF 424 QRIV+NGRT RNTNTM+NYLLP++AQ FSKWA+E + D+++EK LGTRER LT CLWAF Sbjct 363 QRIVVNGRTQRNTNTMKNYLLPVVAQAFSKWAREARADMEDEKPLGTRERTLTCCCLWAF 422 Query 425 RTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEEKLLQV 484 ++ K+H+ Y+ P TQT VKVP++F +F + S+W++SL M +RQ++KL L + + L Sbjct 423 KSHKIHTMYKRPETQTIVKVPSTFDSFVIPSLWSSSLSMGIRQRIKLLLSARMAQGLPYS 482 Query 485 SEELVMEAKAAFEDAQEEARAEKLREALPPLVADKGIEAAAEVVCEVEGLQADIGA 540 + A E +EA R ALPPLV+ + A+V +VE L GA Sbjct 483 GDRTEARAAEEEEKEVQEAELT--RAALPPLVSGSCADDIAQV--DVEELTFRAGA 534 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sagiyama virus] Sequence ID: Q9JGL0.3 Length: 2467 Range 1: 3 to 534 Score:723 bits(1866), Expect:0.0, Method:Compositional matrix adjust., Identities:345/536(64%), Positives:424/536(79%), Gaps:5/536(0%) Query 6 VNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILD 65 V VDV+ SPF+ LQK+FP FEV +QQVTPNDHANARAFSHLA+KLIE EVPT TILD Sbjct 3 VTVDVEADSPFLKALQKAFPAFEVESQQVTPNDHANARAFSHLATKLIEQEVPTGVTILD 62 Query 66 IGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKDLRTVL 125 +GSAPARR+ S+H YHC+CPM+S EDP+R+ YA KLA+ + + +KN+ KI DL+ V+ Sbjct 63 VGSAPARRLMSDHTYHCICPMKSAEDPERLANYARKLAKASGTVLDKNVSGKITDLQDVM 122 Query 126 DTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGFDTTQF 184 TPD E+P+ C H D TC RAE +V QDVY ++AP ++YHQA+KGVRT YWIGFDTT F Sbjct 123 ATPDLESPTFCLHTDETCRTRAEVAVYQDVYAVHAPTSLYHQAIKGVRTAYWIGFDTTPF 182 Query 185 MFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRVYFSV 244 MF A+AG+YPAY+TNWADE+VL+ARNIGLC+T LSEGR GKLSIMRKK L+P RV FSV Sbjct 183 MFEALAGAYPAYSTNWADEQVLQARNIGLCATGLSEGRRGKLSIMRKKCLRPSDRVMFSV 242 Query 245 GSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITGETVGY 304 GSTLY E R L+SWHLPSVFHL GK S+TCRCDTVVSCEGYVVKKITISPGI G+TV Y Sbjct 243 GSTLYTESRKLLRSWHLPSVFHLKGKNSFTCRCDTVVSCEGYVVKKITISPGIYGKTVDY 302 Query 305 AVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLLVGLN 364 AVTH++EGFL+CK+TDTV+GERVSFPVCTY+PATICDQMTGI+ATD++P+DAQKLLVGLN Sbjct 303 AVTHHAEGFLVCKITDTVRGERVSFPVCTYVPATICDQMTGILATDVTPEDAQKLLVGLN 362 Query 365 QRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYGCLWAF 424 QRIV+NGRT RNTNTM+NYLLP++AQ FSKWA+E + D+++EK LGTRER LT CLWAF Sbjct 363 QRIVVNGRTQRNTNTMKNYLLPVVAQAFSKWAREARADMEDEKPLGTRERTLTCCCLWAF 422 Query 425 RTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEEKLLQV 484 ++ K+H+ Y+ P TQT VKVP++F +F + S+W++SL M +RQ++KL L + + L Sbjct 423 KSHKIHTMYKRPETQTIVKVPSTFDSFVIPSLWSSSLSMGIRQRIKLLLSARMAQGLPYS 482 Query 485 SEELVMEAKAAFEDAQEEARAEKLREALPPLVADKGIEAAAEVVCEVEGLQADIGA 540 + A E +EA R ALPPLV+ + A+V +VE L GA Sbjct 483 GDRTEARAAEEEEKEAQEAELT--RAALPPLVSGSCADDIAQV--DVEELTFRAGA 534 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Semliki Forest virus] Sequence ID: P08411.2 Length: 2432 Range 1: 5 to 537 Score:722 bits(1863), Expect:0.0, Method:Compositional matrix adjust., Identities:341/536(64%), Positives:422/536(78%), Gaps:4/536(0%) Query 6 VNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILD 65 V+VD++ SPF+ LQK+FP FEV + QVTPNDHANARAFSHLA+KLIE E ILD Sbjct 5 VHVDIEADSPFIKSLQKAFPSFEVESLQVTPNDHANARAFSHLATKLIEQETDKDTLILD 64 Query 66 IGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKDLRTVL 125 IGSAP+RRM S H+YHCVCPMRS EDP+R++ YA KLA + K+ ++ + KI DL+TV+ Sbjct 65 IGSAPSRRMMSTHKYHCVCPMRSAEDPERLVCYAKKLAAASGKVLDREIAGKITDLQTVM 124 Query 126 DTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGFDTTQF 184 TPDAE+P+ C H DVTC AE +V QDVY ++AP ++YHQAMKGVRT YWIGFDTT F Sbjct 125 ATPDAESPTFCLHTDVTCRTAAEVAVYQDVYAVHAPTSLYHQAMKGVRTAYWIGFDTTPF 184 Query 185 MFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRVYFSV 244 MF A+AG+YP Y TNWADE+VL+ARNIGLC+ L+EGR GKLSI+RKK+LKP V FSV Sbjct 185 MFDALAGAYPTYATNWADEQVLQARNIGLCAASLTEGRLGKLSILRKKQLKPCDTVMFSV 244 Query 245 GSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITGETVGY 304 GSTLY E R L+SWHLPSVFHL GKQS+TCRCDT+VSCEGYVVKKIT+ PG+ G+TVGY Sbjct 245 GSTLYTESRKLLRSWHLPSVFHLKGKQSFTCRCDTIVSCEGYVVKKITMCPGLYGKTVGY 304 Query 305 AVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLLVGLN 364 AVT+++EGFL+CK TDTVKGERVSFPVCTY+P+TICDQMTGI+ATD++P+DAQKLLVGLN Sbjct 305 AVTYHAEGFLVCKTTDTVKGERVSFPVCTYVPSTICDQMTGILATDVTPEDAQKLLVGLN 364 Query 365 QRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYGCLWAF 424 QRIV+NGRT RNTNTM+NYLLPI+A FSKWA+E K DLD+EK LG RER LT CLWAF Sbjct 365 QRIVVNGRTQRNTNTMKNYLLPIVAVAFSKWAREYKADLDDEKPLGVRERSLTCCCLWAF 424 Query 425 RTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEEKLLQV 484 +T+K+H+ Y+ P TQT VKVP+ F++F + S+W+T L + +R ++K+ L K + +L+ V Sbjct 425 KTRKMHTMYKKPDTQTIVKVPSEFNSFVIPSLWSTGLAIPVRSRIKMLLAKKTKRELIPV 484 Query 485 SEELVMEAKAAFEDAQEEARAEKLREALPPLVADKGIEAAAEVVCEVEGLQADIGA 540 + A+ A ++ +E AE REALPPLV E V +VE L+ GA Sbjct 485 LD--ASSARDAEQEEKERLEAELTREALPPLVPIAPAETGV-VDVDVEELEYHAGA 537 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ross river virus (STRAIN NB5092)] Sequence ID: P13887.2 Length: 2480 Range 1: 3 to 533 Score:717 bits(1852), Expect:0.0, Method:Compositional matrix adjust., Identities:343/535(64%), Positives:421/535(78%), Gaps:4/535(0%) Query 6 VNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILD 65 V VDV+ SPF+ LQK+FP FEV +QQVTPNDHANARAFSHLA+KLIE EVP TILD Sbjct 3 VTVDVEADSPFLKALQKAFPAFEVESQQVTPNDHANARAFSHLATKLIEQEVPANITILD 62 Query 66 IGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKDLRTVL 125 +GSAPARR+ S+H YHC+CPM+S EDP+R+ YA KLA+ A ++ +KN+ KI DL+ V+ Sbjct 63 VGSAPARRLMSDHSYHCICPMKSAEDPERLANYARKLAKTAGEVLDKNVSGKITDLQDVM 122 Query 126 DTPDAETPSLCFHNDVTCNMRAEYSVMQDVYINAPGTIYHQAMKGVRTLYWIGFDTTQFM 185 TPD E+P+ C H D TC RAE +V QDV +AP ++YHQAMKGVRT+YWIGFDTT FM Sbjct 123 ATPDLESPTFCLHTDETCRTRAEVAVYQDVXXHAPTSLYHQAMKGVRTVYWIGFDTTPFM 182 Query 186 FSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRVYFSVG 245 F +AG+YP Y+TNWADE+VL+ARNIGLC+T LSEG GK+SIMRKK L+P R FSVG Sbjct 183 FEVVAGAYPTYSTNWADEQVLQARNIGLCATSLSEGHRGKISIMRKKRLRPSDRXMFSVG 242 Query 246 STLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITGETVGYA 305 TLY E R L+SWHLPSVFHL GK S+TCRCDT+VSCEGYVVKKIT+SPG G+TVGYA Sbjct 243 XTLYIESRRLLKSWHLPSVFHLKGKNSFTCRCDTIVSCEGYVVKKITMSPGTYGKTVGYA 302 Query 306 VTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLLVGLNQ 365 VTH++EGFL+CKVTDTV+GERVSFPVCTY+PATICDQMTGI+ATD++P+DAQKLLVGLNQ Sbjct 303 VTHHAEGFLMCKVTDTVRGERVSFPVCTYVPATICDQMTGILATDVTPEDAQKLLVGLNQ 362 Query 366 RIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYGCLWAFR 425 RIV+NGRT RNTNTM+NYLLP++AQ FSKWA+E K D+++EK LGTRER LT CLWAF+ Sbjct 363 RIVVNGRTQRNTNTMKNYLLPVVAQAFSKWAREAKADMEDEKPLGTRERTLTCCCLWAFK 422 Query 426 TKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEEKLLQVS 485 K H+ Y+ P TQT VKVP++F +F + S+W++SL + +RQ++KL L PK L Sbjct 423 NHKTHTMYKRPDTQTIVKVPSTFDSFVIPSLWSSSLSIGIRQRIKLLLGPKLSRDLPYSG 482 Query 486 EELVMEAKAAFEDAQEEARAEKLREALPPLVADKGIEAAAEVVCEVEGLQADIGA 540 + EA+ A ++A+E AE REALPPLV + +V +VE L GA Sbjct 483 DR--NEAREAEKEAEETKEAELTREALPPLVGSNCADDVDQV--DVEELTYRAGA 533 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [O'nyong-nyong virus strain SG650] Sequence ID: O90368.1 Length: 2513 Range 1: 4 to 535 Score:704 bits(1816), Expect:0.0, Method:Compositional matrix adjust., Identities:335/538(62%), Positives:415/538(77%), Gaps:9/538(1%) Query 6 VNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILD 65 V VD+D S F+ LQ+++P FEV +QVTPNDHANARAFSHLA KLIE E+ +TILD Sbjct 4 VYVDIDADSAFLKALQRAYPMFEVEPKQVTPNDHANARAFSHLAIKLIEQEIDPDSTILD 63 Query 66 IGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKDLRTVL 125 IG APARRM S+ +YHCVCPMRS EDP+R+ YA KLA A K+T+KN+ KI DL+ V+ Sbjct 64 IGPAPARRMMSDRKYHCVCPMRSAEDPERLANYARKLASAAGKVTDKNISGKINDLQAVM 123 Query 126 DTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGFDTTQF 184 P+ ET + C H D TC R + ++ QDVY ++AP ++YHQA+KGVR YWIGFDTT F Sbjct 124 AVPNMETSTFCLHTDATCKQRGDVAIYQDVYAVHAPTSLYHQAIKGVRVAYWIGFDTTPF 183 Query 185 MFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRVYFSV 244 M++AMAG+YP+Y+TNWADE+VL+A+NIGLCST LSEGR GKLSIMR K+LKP RV FSV Sbjct 184 MYNAMAGAYPSYSTNWADEQVLKAKNIGLCSTDLSEGRRGKLSIMRGKKLKPCDRVLFSV 243 Query 245 GSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITGETVGY 304 GSTLYPE R LQSWHLPSVFHL GK S+TCRCDT+VSCEGYVVK++T+SPGI G+T GY Sbjct 244 GSTLYPESRKLLQSWHLPSVFHLKGKLSFTCRCDTIVSCEGYVVKRVTMSPGIYGKTSGY 303 Query 305 AVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLLVGLN 364 AVTH+++GFL+CK TDTV GERVSF VCTY+PATICDQMTGI+AT+++P+DAQKLLVGLN Sbjct 304 AVTHHADGFLMCKTTDTVDGERVSFSVCTYVPATICDQMTGILATEVTPEDAQKLLVGLN 363 Query 365 QRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYGCLWAF 424 QRIV+NGRT RNTNTM+NYLLPI+AQ FSKWAKE + D+++EK+LG RER LT CLWAF Sbjct 364 QRIVVNGRTQRNTNTMKNYLLPIVAQAFSKWAKECRKDMEDEKLLGVRERTLTCCCLWAF 423 Query 425 RTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLK--LALQPKKEEKLL 482 R K H+ Y+ P TQ+ KVPA F +F + S+W++ L + LR ++K L+ PK E+ Sbjct 424 RKHKTHTVYKRPDTQSIQKVPAEFDSFVIPSLWSSGLSIPLRTRIKWLLSKAPKHEQLPH 483 Query 483 QVSEELVMEAKAAFEDAQEEARAEKLREALPPLVADKGIEAAAEVVCEVEGLQADIGA 540 + E EA A DA EE AE REA+PPL + + +V +VE L+ GA Sbjct 484 SGNAE---EAAQAEMDAAEEREAELTREAMPPL---QATQDDVQVEIDVEQLEDRAGA 535 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [O'nyong-nyong virus strain Gulu] Sequence ID: P13886.2 Length: 2514 Range 1: 4 to 535 Score:703 bits(1815), Expect:0.0, Method:Compositional matrix adjust., Identities:337/538(63%), Positives:415/538(77%), Gaps:9/538(1%) Query 6 VNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILD 65 V VD+D S F+ LQ+++P FEV +QVTPNDHANARAFSHLA KLIE E+ +TILD Sbjct 4 VYVDIDADSAFLKALQQAYPMFEVEPKQVTPNDHANARAFSHLAIKLIEQEIDPDSTILD 63 Query 66 IGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKDLRTVL 125 IGSAPARRM S+ +YHCVCPMRS EDP+R+ YA KLA A K+T+KN+ KI DL+ V+ Sbjct 64 IGSAPARRMMSDRKYHCVCPMRSAEDPERLANYARKLASAAGKVTDKNISGKINDLQAVM 123 Query 126 DTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGFDTTQF 184 P+ ET + C H D TC R + ++ QDVY ++AP ++YHQA+KGVR YWIGFDTT F Sbjct 124 AVPNMETSTFCLHTDATCKQRGDVAIYQDVYAVHAPTSLYHQAIKGVRVAYWIGFDTTPF 183 Query 185 MFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRVYFSV 244 M++AMAG+YP+Y+TNWADE+VL+A+NIGLCST LSEGR GKLSIMR K+LKP RV FSV Sbjct 184 MYNAMAGAYPSYSTNWADEQVLKAKNIGLCSTDLSEGRRGKLSIMRGKKLKPCDRVLFSV 243 Query 245 GSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITGETVGY 304 GSTLYPE R LQSWHLPSVFHL GK S+TCRCDT+VSCEGYVVK++T+SPGI G+T GY Sbjct 244 GSTLYPESRKLLQSWHLPSVFHLKGKLSFTCRCDTIVSCEGYVVKRVTMSPGIYGKTSGY 303 Query 305 AVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLLVGLN 364 AVTH++ GFL+CK TDTV GERVSF VCTY+PATICDQMTGI+AT+++P+DAQKLLVGLN Sbjct 304 AVTHHAGGFLMCKTTDTVDGERVSFSVCTYVPATICDQMTGILATEVTPEDAQKLLVGLN 363 Query 365 QRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYGCLWAF 424 QRIV+NGRT RNTNTM+NYLLPI+AQ FSKWAKE + D+++EK+LG RER LT CLWAF Sbjct 364 QRIVVNGRTQRNTNTMKNYLLPIVAQAFSKWAKECRKDMEDEKLLGVRERTLTCCCLWAF 423 Query 425 RTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLK--LALQPKKEEKLL 482 R K H+ Y+ P TQ+ KVPA F +F + S+W++ L + LR ++K L+ PK E+ Sbjct 424 RKHKTHTVYKRPDTQSIQKVPAEFDSFVIPSLWSSGLSIPLRTRIKWLLSKAPKYEQLPH 483 Query 483 QVSEELVMEAKAAFEDAQEEARAEKLREALPPLVADKGIEAAAEVVCEVEGLQADIGA 540 + E EA A DA EE AE REA+PPL A + +V +VE L+ GA Sbjct 484 SGNAE---EAAQAETDAVEEQEAELTREAMPPLQA---TQDDIQVEIDVEQLEDRAGA 535 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Igbo Ora virus] Sequence ID: O90370.1 Length: 2513 Range 1: 4 to 535 Score:699 bits(1804), Expect:0.0, Method:Compositional matrix adjust., Identities:334/538(62%), Positives:413/538(76%), Gaps:9/538(1%) Query 6 VNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILD 65 V VD+D S F+ LQ+++P FEV +QVTPNDHANARAFSHLA KLIE E+ +TIL Sbjct 4 VYVDIDADSAFLKALQRAYPMFEVEPKQVTPNDHANARAFSHLAIKLIEQEIDPGSTILG 63 Query 66 IGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKDLRTVL 125 IGSAPARRM S+ +YHCVCPMRS EDP+R+ YA KLA A K+T+KN+ KI DL+ V+ Sbjct 64 IGSAPARRMMSDRKYHCVCPMRSAEDPERLANYARKLASAAGKVTDKNISGKINDLQAVM 123 Query 126 DTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGFDTTQF 184 P+ ET + C H D TC R + ++ QDVY ++AP ++YHQA+KGV YWIGFDTT F Sbjct 124 AVPNMETSTFCLHTDATCKQRGDVAIYQDVYAVHAPTSLYHQAIKGVHVAYWIGFDTTPF 183 Query 185 MFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRVYFSV 244 M++AMAG+YP+Y+TNWADE+VL+A+NIGLCST LSEGR GKLSIMR K+ KP RV FSV Sbjct 184 MYNAMAGAYPSYSTNWADEQVLKAKNIGLCSTDLSEGRRGKLSIMRGKKFKPCDRVLFSV 243 Query 245 GSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITGETVGY 304 GSTLYPE R LQSWHLPSVFHL GK S+TCRCDT+VSCEGYVVK++T+SPGI G+T GY Sbjct 244 GSTLYPESRKLLQSWHLPSVFHLKGKLSFTCRCDTIVSCEGYVVKRVTMSPGIYGKTSGY 303 Query 305 AVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLLVGLN 364 AVTH+++GFL+CK TDTV GERVSF VCTY+PATICDQMTGI+AT+++P+DAQKLLVGLN Sbjct 304 AVTHHADGFLMCKTTDTVDGERVSFSVCTYVPATICDQMTGILATEVTPEDAQKLLVGLN 363 Query 365 QRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYGCLWAF 424 QRIV+NGRT RNTNTM+NYLLPI+AQ FSKWAKE + D+++EK+LG RER LT CLWAF Sbjct 364 QRIVVNGRTQRNTNTMKNYLLPIVAQAFSKWAKECRKDMEDEKLLGVRERTLTCCCLWAF 423 Query 425 RTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLK--LALQPKKEEKLL 482 R K H+ Y+ P TQ+ KVPA F +F + S+W++ L + LR ++K L+ PK E+ Sbjct 424 RKHKTHTVYKRPDTQSIQKVPAEFDSFVIPSLWSSGLSIPLRTRIKWLLSKAPKHEQLPH 483 Query 483 QVSEELVMEAKAAFEDAQEEARAEKLREALPPLVADKGIEAAAEVVCEVEGLQADIGA 540 + E EA A DA EE AE REA+PPL A + +V +VE L+ GA Sbjct 484 SGNAE---EAAQAETDAVEEREAELTREAMPPLQA---TQDDVQVEIDVEQLEDRAGA 535 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Chikungunya virus strain Senegal 37997] Sequence ID: Q5XXP4.1 Length: 2474 Range 1: 4 to 535 Score:690 bits(1781), Expect:0.0, Method:Compositional matrix adjust., Identities:335/536(63%), Positives:422/536(78%), Gaps:5/536(0%) Query 6 VNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILD 65 V VD+D S F+ LQ+++P FEV +QVTPNDHANARAFSHLA KLIE E+ +TILD Sbjct 4 VYVDIDADSAFLKALQRAYPMFEVEPRQVTPNDHANARAFSHLAIKLIEQEIDPDSTILD 63 Query 66 IGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKDLRTVL 125 IGSAPARRM S+ +YHCVCPMRS EDP+R+ YA KLA A K+ ++N+ EKI DL+ V+ Sbjct 64 IGSAPARRMMSDRKYHCVCPMRSAEDPERLANYARKLASAAGKVLDRNISEKIGDLQAVM 123 Query 126 DTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGFDTTQF 184 PDAETP+ C H DV+C RA+ ++ QDVY ++AP ++YHQA+KGVR YWIGFDTT F Sbjct 124 AVPDAETPTFCLHTDVSCRQRADVAIYQDVYAVHAPTSLYHQAIKGVRVAYWIGFDTTPF 183 Query 185 MFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRVYFSV 244 M++AMAG+YP+Y+TNWADE+VL+A+NIGLCST L+EGR GKLSIMR K++KP RV FSV Sbjct 184 MYNAMAGAYPSYSTNWADEQVLKAKNIGLCSTDLTEGRRGKLSIMRGKKMKPCDRVLFSV 243 Query 245 GSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITGETVGY 304 GSTLYPE R L+SWHLPSVFHL GK S+TCRCDTVVSCEGYVVK+ITISPG+ G+T GY Sbjct 244 GSTLYPESRKLLKSWHLPSVFHLKGKLSFTCRCDTVVSCEGYVVKRITISPGLYGKTTGY 303 Query 305 AVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLLVGLN 364 AVTH+++GFL+CK TDTV GERVSF VCTY+PATICDQMTGI+AT+++P+DAQKLLVGLN Sbjct 304 AVTHHADGFLMCKTTDTVDGERVSFSVCTYVPATICDQMTGILATEVTPEDAQKLLVGLN 363 Query 365 QRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYGCLWAF 424 QRIV+NGRT RNTNTM+NYLLP++AQ FSKWAKE + D+++EK+LG RER LT CLWAF Sbjct 364 QRIVVNGRTQRNTNTMKNYLLPVVAQAFSKWAKECRKDMEDEKLLGIRERTLTCCCLWAF 423 Query 425 RTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEEKLLQV 484 + +K H+ Y+ P TQ+ KVPA F +F + S+W++ L + LR ++K L + L+ Sbjct 424 KKQKTHTVYKRPDTQSIQKVPAEFDSFVVPSLWSSGLSIPLRTRIKWLLSKVPKTDLIPY 483 Query 485 SEELVMEAKAAFEDAQEEARAEKLREALPPLVADKGIEAAAEVVCEVEGLQADIGA 540 S + EA+ A ++A+EE AE REALPPL A + +V +VE L+ GA Sbjct 484 SGD-AKEARDAEKEAEEEREAELTREALPPLQA---AQDDVQVEIDVEQLEDRAGA 535 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Mayaro virus (strain Brazil)] Sequence ID: Q8QZ73.3 Length: 2437 Range 1: 4 to 481 Score:687 bits(1772), Expect:0.0, Method:Compositional matrix adjust., Identities:309/478(65%), Positives:389/478(81%), Gaps:1/478(0%) Query 6 VNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILD 65 V VD++ +SPF+ LQ++FP FEV AQQVTPNDHANARAFSHLA+KLIE E ILD Sbjct 4 VFVDIEAESPFLKSLQRAFPAFEVEAQQVTPNDHANARAFSHLATKLIEQETEKDTLILD 63 Query 66 IGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKDLRTVL 125 IGSAPARRM SEH YHCVCPMRS EDP+R++ YA KLA+ + ++ ++N+ KI DL++V+ Sbjct 64 IGSAPARRMMSEHTYHCVCPMRSAEDPERLLYYARKLAKASGEVVDRNIAAKIDDLQSVM 123 Query 126 DTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGFDTTQF 184 TPD E+ + C H D TC +AE +V QDVY ++AP ++Y QAMKGVRT YWIGFDTT F Sbjct 124 ATPDNESRTFCLHTDQTCRTQAEVAVYQDVYAVHAPTSLYFQAMKGVRTAYWIGFDTTPF 183 Query 185 MFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRVYFSV 244 MF MAG+YP Y TNWADE+VL+ARNIGLCS L+EG GKLSIMRKK++ P ++ FSV Sbjct 184 MFDTMAGAYPTYATNWADEQVLKARNIGLCSASLTEGHLGKLSIMRKKKMTPSDQIMFSV 243 Query 245 GSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITGETVGY 304 GSTLY E R L+SWHLPSVFHL G+QSYTCRCDT+VSCEGYVVKKIT+SPG+ G+T GY Sbjct 244 GSTLYIESRRLLKSWHLPSVFHLKGRQSYTCRCDTIVSCEGYVVKKITMSPGVFGKTSGY 303 Query 305 AVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLLVGLN 364 AVTH++EGFL+CK TDT+ GERVSFP+CTY+P+TICDQMTGI+AT+++P+DAQKLLVGLN Sbjct 304 AVTHHAEGFLVCKTTDTIAGERVSFPICTYVPSTICDQMTGILATEVTPEDAQKLLVGLN 363 Query 365 QRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYGCLWAF 424 QRIV+NGRT RNTNTM+NYLLP+++Q FSKWAKE + D ++EK +G RER LT CLWAF Sbjct 364 QRIVVNGRTQRNTNTMKNYLLPVVSQAFSKWAKEYRLDQEDEKNMGMRERTLTCCCLWAF 423 Query 425 RTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEEKLL 482 +T K H+ Y+ P TQT VKVP+ F++F + S+W+ L + +R +++L LQ ++ E L+ Sbjct 424 KTHKNHTMYKKPDTQTIVKVPSEFNSFVIPSLWSAGLSIGIRHRIRLLLQSRRVEPLV 481 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Barmah Forest virus] Sequence ID: P87515.3 Length: 2411 Range 1: 1 to 513 Score:685 bits(1768), Expect:0.0, Method:Compositional matrix adjust., Identities:318/517(62%), Positives:399/517(77%), Gaps:5/517(0%) Query 1 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTT 60 M KPVV +DV+P+S F Q+Q FPQFE+ A Q TPNDHA+ARAFSHLA+KLIE+E Sbjct 1 MAKPVVKIDVEPESHFAKQVQSCFPQFEIEAVQTTPNDHAHARAFSHLATKLIEMETAKD 60 Query 61 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD 120 ILDIGSAPARR++SEH+YHCVCPM+ EDP+RM+ YA KL + K EK++D Sbjct 61 QIILDIGSAPARRLYSEHKYHCVCPMKCTEDPERMLGYARKLIAGSAK----GKAEKLRD 116 Query 121 LRTVLDTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGF 179 LR VL TPD ET SLC H D +C R + +V QDVY I+AP T+YHQA+KGVRT YWIGF Sbjct 117 LRDVLATPDIETQSLCLHTDASCRYRGDVAVYQDVYAIDAPTTLYHQALKGVRTAYWIGF 176 Query 180 DTTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSR 239 DTT FM+ A+AG+YP Y+TNWADE+VLE+RNIGLCS K+SEG SI+RKK LK R Sbjct 177 DTTPFMYDALAGAYPLYSTNWADEQVLESRNIGLCSDKVSEGGKKGRSILRKKFLKQSDR 236 Query 240 VYFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITG 299 V FSVGSTLY E R LQSWHLPS FHL GK S+TCRCDT+VSCEGYV+KKIT+ PG+TG Sbjct 237 VMFSVGSTLYTESRKLLQSWHLPSTFHLKGKSSFTCRCDTIVSCEGYVLKKITMCPGVTG 296 Query 300 ETVGYAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKL 359 + +GYAVTH+ EGF++ KVTDT++GERVSF VCTY+P T+CDQMTGI+AT+++ DDAQKL Sbjct 297 KPIGYAVTHHKEGFVVGKVTDTIRGERVSFAVCTYVPTTLCDQMTGILATEVTADDAQKL 356 Query 360 LVGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYG 419 LVGLNQRIV+NGRT RNTNTM+NYLLP++AQ +KWAKE K D+++E+ L R+R LT Sbjct 357 LVGLNQRIVVNGRTQRNTNTMKNYLLPLVAQALAKWAKEAKQDMEDERPLNERQRTLTCL 416 Query 420 CLWAFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEE 479 C WAF+ K H+ Y+ P TQ+ VKVP F++FP+ S+W+ + +SLRQKLK+ LQ ++ Sbjct 417 CCWAFKRNKRHAIYKRPDTQSIVKVPCEFTSFPLVSLWSAGMSISLRQKLKMMLQARQPT 476 Query 480 KLLQVSEELVMEAKAAFEDAQEEARAEKLREALPPLV 516 ++ V+EEL+ EA A ++A + A AE A P +V Sbjct 477 QIAAVTEELIQEAAAVEQEAVDTANAELDHAAWPSIV 513 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Chikungunya virus strain S27-African prototype] Sequence ID: Q8JUX6.1 Length: 2474 Range 1: 4 to 535 Score:679 bits(1753), Expect:0.0, Method:Compositional matrix adjust., Identities:322/536(60%), Positives:410/536(76%), Gaps:5/536(0%) Query 6 VNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILD 65 V VD+D S F+ LQ+++P FEV +QVTPNDHANARAFSHLA KLIE E+ +TILD Sbjct 4 VYVDIDADSAFLKALQRAYPMFEVEPRQVTPNDHANARAFSHLAIKLIEQEIDPDSTILD 63 Query 66 IGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKDLRTVL 125 IGSAPARRM S+ +YHCVCPMRS EDP+R+ YA KLA A K+ ++N+ KI DL+ V+ Sbjct 64 IGSAPARRMMSDRKYHCVCPMRSAEDPERLANYARKLASAAGKVLDRNISGKIGDLQAVM 123 Query 126 DTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGFDTTQF 184 PD ETP+ C H DV+C RA+ ++ QDVY ++AP ++YHQA+KGVR YW+GFDTT F Sbjct 124 AVPDTETPTFCLHTDVSCRQRADVAIYQDVYAVHAPTSLYHQAIKGVRLAYWVGFDTTPF 183 Query 185 MFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRVYFSV 244 M++AMAG+YP+Y+TNWADE+VL+A+NIGLCST L+EGR GKLSIMR K+L+P RV FSV Sbjct 184 MYNAMAGAYPSYSTNWADEQVLKAKNIGLCSTDLTEGRRGKLSIMRGKKLEPCDRVLFSV 243 Query 245 GSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITGETVGY 304 GSTLYPE R L+SWHLPSVFHL GK S+TCRCDTVVSCEGYVVK+IT+SPG+ G+T GY Sbjct 244 GSTLYPESRKLLKSWHLPSVFHLKGKLSFTCRCDTVVSCEGYVVKRITMSPGLYGKTTGY 303 Query 305 AVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLLVGLN 364 AVTH+++GFL+CK TDTV GERVSF VCTY+PATICDQMTGI+AT+++P+DAQKLLVGLN Sbjct 304 AVTHHADGFLMCKTTDTVDGERVSFSVCTYVPATICDQMTGILATEVTPEDAQKLLVGLN 363 Query 365 QRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYGCLWAF 424 QRIV+NGRT RNTNTM+NY++P++AQ FSKWAKE + D+++EK+LG RER LT CLWAF Sbjct 364 QRIVVNGRTQRNTNTMKNYMIPVVAQAFSKWAKECRKDMEDEKLLGVRERTLTCCCLWAF 423 Query 425 RTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEEKLLQV 484 + +K H+ Y+ P TQ+ KV A F +F + S+W++ L + LR ++K L + L Sbjct 424 KKQKTHTVYKRPDTQSIQKVQAEFDSFVVPSLWSSGLSIPLRTRIKWLLSKVPKTDLTPY 483 Query 485 SEELVMEAKAAFEDAQEEARAEKLREALPPLVADKGIEAAAEVVCEVEGLQADIGA 540 S + A E +E L EALPPL + + +V +VE L+ GA Sbjct 484 SGDAQEARDAEKEAEEEREAELTL-EALPPL---QAAQEDVQVEIDVEQLEDRAGA 535 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain P676)] Sequence ID: P36328.2 Length: 2493 Range 1: 1 to 516 Score:674 bits(1739), Expect:0.0, Method:Compositional matrix adjust., Identities:315/519(61%), Positives:402/519(77%), Gaps:4/519(0%) Query 1 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTT 60 MEK V+VD++ SPF+ LQ+SFPQFEV A+QVT NDHANARAFSHLASKLIE EV + Sbjct 1 MEK--VHVDIEEDSPFLRALQRSFPQFEVEAKQVTDNDHANARAFSHLASKLIETEVDPS 58 Query 61 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD 120 TILDIGSAPARRM+S+H+YHC+CPMR EDPDR+ KYA+KL + +IT+K L +K+K+ Sbjct 59 DTILDIGSAPARRMYSKHKYHCICPMRCAEDPDRLYKYATKLKKNCKEITDKELDKKMKE 118 Query 121 LRTVLDTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGF 179 L V+ PD ET ++C H+D +C + +V QDVY ++ P ++YHQA KGVR YWIGF Sbjct 119 LAAVMSDPDLETETMCLHDDESCRYEGQVAVYQDVYAVDGPTSLYHQANKGVRVAYWIGF 178 Query 180 DTTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSR 239 DTT FMF +AG+YP+Y+TNWADE VL ARNIGLCS+ + E +SI+RKK LKP + Sbjct 179 DTTPFMFKNLAGAYPSYSTNWADETVLTARNIGLCSSDVMERSRRGMSILRKKYLKPSNN 238 Query 240 VYFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITG 299 V FSVGST+Y E R L+SWHLPSVFHL GKQ+YTCRC+T+VSC+GYVVK+I ISPG+ G Sbjct 239 VLFSVGSTIYHEKRDLLRSWHLPSVFHLRGKQNYTCRCETIVSCDGYVVKRIAISPGLYG 298 Query 300 ETVGYAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKL 359 + GYA T + EGFL CKVTDT+ GERVSFPVCTY+PAT+CDQMTGI+ATD+S DDAQKL Sbjct 299 KPSGYAATMHREGFLCCKVTDTLNGERVSFPVCTYVPATLCDQMTGILATDVSADDAQKL 358 Query 360 LVGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYG 419 LVGLNQRIV+NGRT RNTNTM+NYLLP++AQ F++WAKE K+D ++E+ LG R+R+L G Sbjct 359 LVGLNQRIVVNGRTQRNTNTMKNYLLPVVAQAFARWAKEYKEDQEDERPLGLRDRQLVMG 418 Query 420 CLWAFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEE 479 C WAFR K+ S Y+ P TQT +KV + F +F + + + +L + LR +++ L+ KE Sbjct 419 CCWAFRRHKITSIYKRPDTQTIIKVNSDFHSFVLPRIGSNTLEIGLRTRIRKMLEEHKEP 478 Query 480 KLLQVSEELVMEAKAAFEDAQEEARAEKLREALPPLVAD 518 L +E+ + EAK A ++A+E AE+LR ALPPL AD Sbjct 479 SPLITAED-IQEAKCAADEAKEVREAEELRAALPPLAAD 516 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Trinidad donkey)] Sequence ID: P27282.3 Length: 2493 Range 1: 1 to 516 Score:674 bits(1738), Expect:0.0, Method:Compositional matrix adjust., Identities:316/519(61%), Positives:402/519(77%), Gaps:4/519(0%) Query 1 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTT 60 MEK V+VD++ SPF+ LQ+SFPQFEV A+QVT NDHANARAFSHLASKLIE EV + Sbjct 1 MEK--VHVDIEEDSPFLRALQRSFPQFEVEAKQVTDNDHANARAFSHLASKLIETEVDPS 58 Query 61 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD 120 TILDIGSAPARRM+S+H+YHC+CPMR EDPDR+ KYA+KL + +IT+K L +K+K+ Sbjct 59 DTILDIGSAPARRMYSKHKYHCICPMRCAEDPDRLYKYATKLKKNCKEITDKELDKKMKE 118 Query 121 LRTVLDTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGF 179 L V+ PD ET ++C H+D +C + +V QDVY ++ P ++YHQA KGVR YWIGF Sbjct 119 LAAVMSDPDLETETMCLHDDESCRYEGQVAVYQDVYAVDGPTSLYHQANKGVRVAYWIGF 178 Query 180 DTTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSR 239 DTT FMF +AG+YP+Y+TNWADE VL ARNIGLCS+ + E +SI+RKK LKP + Sbjct 179 DTTPFMFKNLAGAYPSYSTNWADETVLTARNIGLCSSDVMERSRRGMSILRKKYLKPSNN 238 Query 240 VYFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITG 299 V FSVGST+Y E R L+SWHLPSVFHL GKQ+YTCRC+T+VSC+GYVVK+I ISPG+ G Sbjct 239 VLFSVGSTIYHEKRDLLRSWHLPSVFHLRGKQNYTCRCETIVSCDGYVVKRIAISPGLYG 298 Query 300 ETVGYAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKL 359 + GYA T + EGFL CKVTDT+ GERVSFPVCTY+PAT+CDQMTGI+ATD+S DDAQKL Sbjct 299 KPSGYAATMHREGFLCCKVTDTLNGERVSFPVCTYVPATLCDQMTGILATDVSADDAQKL 358 Query 360 LVGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYG 419 LVGLNQRIV+NGRT RNTNTM+NYLLP++AQ F++WAKE K+D ++E+ LG R+R+L G Sbjct 359 LVGLNQRIVVNGRTQRNTNTMKNYLLPVVAQAFARWAKEYKEDQEDERPLGLRDRQLVMG 418 Query 420 CLWAFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEE 479 C WAFR K+ S Y+ P TQT +KV + F +F + + + +L + LR +++ L+ KE Sbjct 419 CCWAFRRHKITSIYKRPDTQTIIKVNSDFHSFVLPRIGSNTLEIGLRTRIRKMLEEHKEP 478 Query 480 KLLQVSEELVMEAKAAFEDAQEEARAEKLREALPPLVAD 518 L +E+ V EAK A ++A+E AE+LR ALPPL AD Sbjct 479 SPLITAED-VQEAKCAADEAKEVREAEELRAALPPLAAD 516 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain 3880)] Sequence ID: P36327.3 Length: 2485 Range 1: 1 to 516 Score:672 bits(1733), Expect:0.0, Method:Compositional matrix adjust., Identities:314/519(61%), Positives:401/519(77%), Gaps:4/519(0%) Query 1 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTT 60 MEK V+VD++ SPF+ LQ+SFPQFEV A+QVT NDHANARAFSHLASKLIE EV + Sbjct 1 MEK--VHVDIEEDSPFLRALQRSFPQFEVEAKQVTDNDHANARAFSHLASKLIETEVDPS 58 Query 61 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD 120 TILDIGSAPARRM+S+H+YHC+CPMR EDPDR+ KYA+KL + +IT+K L +K+K+ Sbjct 59 DTILDIGSAPARRMYSKHKYHCICPMRCAEDPDRLYKYATKLKKNCKEITDKELDKKMKE 118 Query 121 LRTVLDTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGF 179 L V+ PD ET ++C H+D +C + +V QDVY ++ P ++YHQA KGVR YWIGF Sbjct 119 LAAVMSDPDLETETMCLHDDESCRYEGQVAVYQDVYAVDGPTSLYHQANKGVRVAYWIGF 178 Query 180 DTTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSR 239 DTT FMF +AG+YP+Y+TNWADE VL ARNIGLCS+ + E +SI+RKK LKP + Sbjct 179 DTTPFMFKNLAGAYPSYSTNWADETVLTARNIGLCSSDVMERSRRGMSILRKKYLKPSNN 238 Query 240 VYFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITG 299 V FSVGST+Y E R L+SWHLPSVFHL GKQ+YTCRC+T+VSC+GYVVK+I ISPG+ G Sbjct 239 VLFSVGSTIYHEKRDLLRSWHLPSVFHLRGKQNYTCRCETIVSCDGYVVKRIAISPGLYG 298 Query 300 ETVGYAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKL 359 + GYA T + EGFL CKVTDT+ GERVSFPVCTY+PAT+CDQMTGI+ATD+S DDAQKL Sbjct 299 KPSGYAATMHREGFLCCKVTDTLNGERVSFPVCTYVPATLCDQMTGILATDVSADDAQKL 358 Query 360 LVGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYG 419 LVGLNQRIV+NGRT RNTNTM+NYLLP++AQ F++WAKE K+D ++E+ LG R+R+L G Sbjct 359 LVGLNQRIVVNGRTQRNTNTMKNYLLPVVAQAFARWAKEYKEDQEDERPLGLRDRQLVMG 418 Query 420 CLWAFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEE 479 C WAFR K+ S Y+ P TQT +KV + F +F + + + +L + LR +++ L+ KE Sbjct 419 CCWAFRRHKITSIYKRPDTQTIIKVNSDFHSFVLPRIGSNTLEIGLRTRIRKMLEEHKEP 478 Query 480 KLLQVSEELVMEAKAAFEDAQEEARAEKLREALPPLVAD 518 L +E+ + EAK A ++A+E AE+LR LPPL AD Sbjct 479 SPLITAED-IQEAKCAADEAKEVREAEELRAVLPPLAAD 516 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Mena II)] Sequence ID: Q9WJC7.3 Length: 2499 Range 1: 1 to 534 Score:660 bits(1703), Expect:0.0, Method:Compositional matrix adjust., Identities:316/537(59%), Positives:411/537(76%), Gaps:7/537(1%) Query 1 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTT 60 MEK V+VD++ SPF+ LQ+SFPQFEV A+QVT NDHANARAFSHLASKLIE EV + Sbjct 1 MEK--VHVDIEEDSPFLRALQRSFPQFEVEAKQVTDNDHANARAFSHLASKLIETEVEPS 58 Query 61 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD 120 TILDIGSAPARRM+S+H+YHC+CPM+ EDPDR+ KYA+KL + +IT+K L +K+K+ Sbjct 59 DTILDIGSAPARRMYSKHKYHCICPMKCAEDPDRLFKYAAKLKKNCKEITDKELDKKMKE 118 Query 121 LRTVLDTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGF 179 L V++ PD ET ++C H+D TC + +V QDVY ++ P ++YHQA KGVR YWIGF Sbjct 119 LAEVMNDPDLETETICLHDDETCRFEGQVAVYQDVYAVDGPTSLYHQANKGVRVAYWIGF 178 Query 180 DTTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSR 239 DTT FMF +AG+YP+Y+TNWADE VL ARNIGLCS+ + E +SI+RKK LKP + Sbjct 179 DTTPFMFKNLAGAYPSYSTNWADETVLTARNIGLCSSDVMERSRRGMSILRKKFLKPSNN 238 Query 240 VYFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITG 299 V FSVGST+Y E R L+SWHLPSVFHL GKQ+YTCRC+T+VSC+GYVVK+I ISPG+ G Sbjct 239 VLFSVGSTIYHEKRDLLRSWHLPSVFHLRGKQNYTCRCETIVSCDGYVVKRIAISPGLYG 298 Query 300 ETVGYAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKL 359 + GYA T + EGFL CKVTDT+ GERVSFPVCTY+PAT+CDQMTGI+ATD+S DDAQKL Sbjct 299 KPSGYAATMHREGFLCCKVTDTLNGERVSFPVCTYVPATLCDQMTGILATDVSADDAQKL 358 Query 360 LVGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYG 419 LVGLNQRIV+NGRT RNTNTM+NYLLP++AQ F++WAKE K+D ++E+ LG R+R+L G Sbjct 359 LVGLNQRIVVNGRTQRNTNTMKNYLLPVVAQAFARWAKEYKEDQEDERPLGLRDRQLVMG 418 Query 420 CLWAFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEE 479 C WAFR K+ S Y+ P TQT +KV + F +F + + +++L + LR ++K L+ + Sbjct 419 CCWAFRKHKITSVYKRPDTQTIIKVNSDFHSFVLPRIGSSTLEIGLRTRIKKLLEEPVDR 478 Query 480 KLLQVSEELVMEAKAAFEDAQEEARAEKLREALPPLVAD---KGIEAAAEVVCEVEG 533 L +++ + EAK A ++A+E AE+LR ALPPL AD +EA +++ + G Sbjct 479 PPLITADD-IQEAKNAADEAKEVKEAEELRAALPPLSADVEEPALEADVDLMLQEAG 534 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain PE-0.0155)] Sequence ID: Q306W6.3 Length: 2471 Range 1: 1 to 532 Score:657 bits(1695), Expect:0.0, Method:Compositional matrix adjust., Identities:325/537(61%), Positives:402/537(74%), Gaps:9/537(1%) Query 1 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTT 60 MEK V+VD+D SP+V LQK FP FE+ A QVT NDHANARAFSHLA+KLIE EV Sbjct 1 MEK--VHVDLDADSPYVKSLQKCFPHFEIEATQVTDNDHANARAFSHLATKLIESEVDPD 58 Query 61 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD 120 ILDIGSAP R S+H+YHC+CPM S EDPDR+ +YA KL + +T++ + K D Sbjct 59 QVILDIGSAPVRHTHSKHKYHCICPMISAEDPDRLHRYADKL--RKSDVTDRFIASKAAD 116 Query 121 LRTVLDTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGF 179 L TV+ TPD ETPSLC H D TC +V QDVY ++AP +IYHQA+KGVRT+YWIGF Sbjct 117 LLTVMSTPDVETPSLCMHTDSTCRYHGTVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGF 176 Query 180 DTTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSR 239 DTT FM+ MAG+YP YNTNWADE VLEARNIGLCS+ L E R GK+SIMRKK+L+P ++ Sbjct 177 DTTPFMYKNMAGAYPTYNTNWADESVLEARNIGLCSSDLHEQRFGKISIMRKKKLQPTNK 236 Query 240 VYFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITG 299 V FSVGST+Y E R L+SWHLP+VFHL GK S+T RC+T+VSCEGYVVKKITISPGI G Sbjct 237 VVFSVGSTIYTEERILLRSWHLPNVFHLKGKTSFTGRCNTIVSCEGYVVKKITISPGIYG 296 Query 300 ETVGYAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKL 359 + A T + EGFL CKVTDT++GERVSFPVCTY+PAT+CDQMTGI+ATD+S DDAQKL Sbjct 297 KVDNLASTMHREGFLSCKVTDTLRGERVSFPVCTYVPATLCDQMTGILATDVSVDDAQKL 356 Query 360 LVGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYG 419 LVGLNQRIV+NGRT RNTNTM NYLLPI+AQ FS+WA+E DL++EK LG RER L G Sbjct 357 LVGLNQRIVVNGRTQRNTNTMPNYLLPIVAQAFSRWAREYHADLEDEKDLGVRERSLVMG 416 Query 420 CLWAFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEE 479 C WAF+T K+ S Y+ PGTQT KVPA F++F + + + L + LR+++K+ L+ KK+ Sbjct 417 CCWAFKTHKITSIYKKPGTQTTKKVPAVFNSFVVPQLTSYGLDIELRRRIKMLLEEKKKP 476 Query 480 KLLQVSEELVMEAKAAFEDAQEEARAEKLREALPPL---VADKGIEAAAEVVCEVEG 533 + ++E V K E+A+ A AE +R ALPPL V + +EA +++ + G Sbjct 477 API-ITEADVAHLKGMQEEAEVVAEAEAIRAALPPLLPEVERETVEADIDLIMQEAG 532 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain CPA201)] Sequence ID: Q8V294.3 Length: 2497 Range 1: 1 to 534 Score:657 bits(1694), Expect:0.0, Method:Compositional matrix adjust., Identities:315/537(59%), Positives:408/537(75%), Gaps:7/537(1%) Query 1 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTT 60 MEK V+VD++ SPF+ LQ+SFPQFEV A+QVT NDHANARAFSHLASKLIE EV + Sbjct 1 MEK--VHVDIEEDSPFLRALQRSFPQFEVEAKQVTDNDHANARAFSHLASKLIETEVEPS 58 Query 61 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD 120 TILDIGSAPARRM+S+H+YHC+CPM+ EDPDR+ KYA+KL + IT+K L +K+K+ Sbjct 59 DTILDIGSAPARRMYSKHKYHCICPMKCAEDPDRLFKYAAKLKKNCKDITDKELDKKMKE 118 Query 121 LRTVLDTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGF 179 L V+ PD ET ++C H+D TC + +V QDVY ++ P ++YHQA KGVR YWIGF Sbjct 119 LAEVMSDPDLETETICLHDDETCRFEGQVAVYQDVYAVDGPTSLYHQANKGVRVAYWIGF 178 Query 180 DTTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSR 239 DTT FMF +AG+YP+Y+TNWADE VL ARNIGLCS+ + E +SI+RKK LKP + Sbjct 179 DTTPFMFKNLAGAYPSYSTNWADETVLTARNIGLCSSDVMERSRRGMSILRKKFLKPSNN 238 Query 240 VYFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITG 299 V FSVGST+Y E R L+SWHLPSVFHL GKQ+YTCRC+T+VSC+GYVVK+I ISPG+ G Sbjct 239 VLFSVGSTIYHEKRDLLRSWHLPSVFHLRGKQNYTCRCETIVSCDGYVVKRIAISPGLYG 298 Query 300 ETVGYAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKL 359 + GYA T + EGFL CKVTDT+ GERVSFPVCTY+PAT+CDQMTGI+ATD+S DDAQKL Sbjct 299 KPSGYAATMHREGFLCCKVTDTLDGERVSFPVCTYVPATLCDQMTGILATDVSADDAQKL 358 Query 360 LVGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYG 419 LVGLNQRIV+NGRT RNTNTM+NYLLP++AQ F++WAKE K+D ++E+ LG R+R+L G Sbjct 359 LVGLNQRIVVNGRTQRNTNTMKNYLLPVVAQAFARWAKEYKEDQEDERPLGLRDRQLVMG 418 Query 420 CLWAFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEE 479 C WAFR K+ S Y+ P TQT +KV + F +F + + + +L + LR +++ L+ + Sbjct 419 CCWAFRKHKITSVYKRPDTQTIIKVNSDFHSFVLPRIGSNTLEIGLRTRIRKLLEEPVDR 478 Query 480 KLLQVSEELVMEAKAAFEDAQEEARAEKLREALPPLVAD---KGIEAAAEVVCEVEG 533 L +++ + EAK A ++A+E AE+LR ALPPL AD +EA +++ + G Sbjct 479 PPLITADD-IQEAKNAADEAKEVKEAEELRAALPPLSADVEEPALEADVDLMLQEAG 534 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Western equine encephalitis virus] Sequence ID: P13896.3 Length: 2467 Range 1: 1 to 472 Score:654 bits(1687), Expect:0.0, Method:Compositional matrix adjust., Identities:304/476(64%), Positives:373/476(78%), Gaps:5/476(1%) Query 1 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTT 60 ME+ ++VD+D SP+V LQ++FPQFE+ A+QVT NDHANARAFSH+A+KLIE EV Sbjct 1 MER--IHVDLDADSPYVKSLQRTFPQFEIEARQVTDNDHANARAFSHVATKLIESEVDRD 58 Query 61 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD 120 ILDIGSAP R S H+YHC+CPM S EDPDR+ +YA +L K IT+KN+ K D Sbjct 59 QVILDIGSAPVRHAHSNHRYHCICPMISAEDPDRLQRYAERL--KKSDITDKNIASKAAD 116 Query 121 LRTVLDTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGF 179 L V+ TPDAETPSLC H D TC +V QDVY ++AP +IYHQA+KGVRT+YWIGF Sbjct 117 LLEVMSTPDAETPSLCMHTDATCRYFGSVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGF 176 Query 180 DTTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSR 239 DTT FM+ MAGSYP YNTNWADE+VLEARNIGL ++ L E R GKLSI+RKK L+P ++ Sbjct 177 DTTPFMYKNMAGSYPTYNTNWADERVLEARNIGLGNSDLQESRLGKLSILRKKRLQPTNK 236 Query 240 VYFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITG 299 + FSVGST+Y E R+ L+SWHLP+VFHL GK ++T RC T+VSCEGYV+KKITISPG+ G Sbjct 237 IIFSVGSTIYTEDRSLLRSWHLPNVFHLKGKSNFTGRCGTIVSCEGYVIKKITISPGLYG 296 Query 300 ETVGYAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKL 359 + A T + EGFL CKVTDT++GERVSF VCTY+PAT+CDQMTGI+ATD+S DDAQKL Sbjct 297 KVENLASTMHREGFLSCKVTDTLRGERVSFAVCTYVPATLCDQMTGILATDVSVDDAQKL 356 Query 360 LVGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYG 419 LVGLNQRIV+NGRT RNTNTMQNYLLP++AQ FS+WA+E + DLD+EK LG RER LT G Sbjct 357 LVGLNQRIVVNGRTQRNTNTMQNYLLPVVAQAFSRWAREHRADLDDEKELGVRERTLTMG 416 Query 420 CLWAFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQP 475 C WAF+T+K+ S Y+ PGTQT KVPA F +F + + + L M R++LKL L+P Sbjct 417 CCWAFKTQKITSIYKKPGTQTIKKVPAVFDSFVIPRLTSHGLDMGFRRRLKLLLEP 472 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain PE-3.0815)] Sequence ID: Q306W8.3 Length: 2474 Range 1: 1 to 532 Score:652 bits(1681), Expect:0.0, Method:Compositional matrix adjust., Identities:324/537(60%), Positives:403/537(75%), Gaps:9/537(1%) Query 1 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTT 60 MEK V+VD+D SP+V LQK FP FE+ A QVT NDHANARAFSHLA+KLIE EV Sbjct 1 MEK--VHVDLDADSPYVKLLQKCFPHFEIEATQVTDNDHANARAFSHLATKLIESEVDPD 58 Query 61 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD 120 ILDIGSAP R S+H+YHC+CPM S EDPDR+ +YA KL + +T++ + K D Sbjct 59 QVILDIGSAPVRHTHSKHKYHCICPMISAEDPDRLQRYADKL--RKSDVTDRFIASKAAD 116 Query 121 LRTVLDTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGF 179 L TV+ TPD ETPSLC H D TC +V QDVY ++AP +IYHQA+KGVRT+YWIGF Sbjct 117 LLTVMSTPDVETPSLCMHTDSTCRYHGTVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGF 176 Query 180 DTTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSR 239 DTT FM+ MAG+YP YNTNWADE VLEARNIGLCS+ L E R GK+SIMRKK+L+P ++ Sbjct 177 DTTPFMYKNMAGAYPTYNTNWADESVLEARNIGLCSSDLHEKRLGKISIMRKKKLQPTNK 236 Query 240 VYFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITG 299 V FSVGST+Y E R L+SWHLP+VFHL GK S+T RC+T+VSC+GYVVKKITISPGI G Sbjct 237 VVFSVGSTIYTEERILLRSWHLPNVFHLKGKTSFTGRCNTIVSCDGYVVKKITISPGIYG 296 Query 300 ETVGYAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKL 359 + A T + EGFL CKVTDT++GERVSFPVCTY+PAT+CDQMTGI+ATD+S DDAQKL Sbjct 297 KVDNLASTLHREGFLSCKVTDTLRGERVSFPVCTYVPATLCDQMTGILATDVSVDDAQKL 356 Query 360 LVGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYG 419 LVGLNQRIV+NGRT RNTNTMQNYLLP++AQ FS+WA+E + DL++EK LG RER L G Sbjct 357 LVGLNQRIVVNGRTQRNTNTMQNYLLPVVAQAFSRWAREYRADLEDEKDLGVRERSLVMG 416 Query 420 CLWAFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEE 479 C WAF+T K+ S Y+ PGTQT KVPA F++F + + L + LR+++K+ L+ K++ Sbjct 417 CCWAFKTHKITSIYKKPGTQTIKKVPAVFNSFVIPQFNSYGLNIGLRRRIKMLLEEKRKP 476 Query 480 KLLQVSEELVMEAKAAFEDAQEEARAEKLREALPPL---VADKGIEAAAEVVCEVEG 533 + ++E V K E+A+ A AE +R ALPPL V + IEA +++ + G Sbjct 477 API-ITEADVAHLKGMQEEAEAVAEAEAVRAALPPLLPEVERETIEADIDLIMQEAG 532 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain Florida 91-469)] Sequence ID: Q4QXJ8.3 Length: 2494 Range 1: 1 to 532 Score:649 bits(1674), Expect:0.0, Method:Compositional matrix adjust., Identities:322/537(60%), Positives:401/537(74%), Gaps:9/537(1%) Query 1 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTT 60 MEK V+VD+D SPFV LQ+ FP FE+ A QVT NDHANARAFSHLA+KLIE EV T Sbjct 1 MEK--VHVDLDADSPFVKSLQRCFPHFEIEATQVTDNDHANARAFSHLATKLIEGEVDTD 58 Query 61 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD 120 ILDIGSAP R S+H+YHC+CPM+S EDPDR+ +YA KL + +T+K + K D Sbjct 59 QVILDIGSAPVRHTHSKHKYHCICPMKSAEDPDRLYRYADKL--RKSDVTDKCIASKAAD 116 Query 121 LRTVLDTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGF 179 L TV+ TPDAETPSLC H D TC +V QDVY ++AP +IY+QA+KGVRT+YWIGF Sbjct 117 LLTVMSTPDAETPSLCMHTDSTCRYHGSVAVYQDVYAVHAPTSIYYQALKGVRTIYWIGF 176 Query 180 DTTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSR 239 DTT FM+ MAG+YP YNTNWADE VLEARNIGL S+ L E GK+SIMRKK+L+P ++ Sbjct 177 DTTPFMYKNMAGAYPTYNTNWADESVLEARNIGLGSSDLHEKSFGKVSIMRKKKLQPTNK 236 Query 240 VYFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITG 299 V FSVGST+Y E R L+SWHLP+VFHL GK S+T RC+T+VSCEGYVVKKIT+SPGI G Sbjct 237 VIFSVGSTIYTEERILLRSWHLPNVFHLKGKTSFTGRCNTIVSCEGYVVKKITLSPGIYG 296 Query 300 ETVGYAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKL 359 + A T + EGFL CKVTDT++GERVSFPVCTY+PAT+CDQMTGI+ATD+S DDAQKL Sbjct 297 KVDNLASTMHREGFLSCKVTDTLRGERVSFPVCTYVPATLCDQMTGILATDVSVDDAQKL 356 Query 360 LVGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYG 419 LVGLNQRIV+NGRT RNTNTMQNYLLP++AQ FS+WA+E + DL++EK LG RER L G Sbjct 357 LVGLNQRIVVNGRTQRNTNTMQNYLLPVVAQAFSRWAREHRADLEDEKGLGVRERSLVMG 416 Query 420 CLWAFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEE 479 C WAF+T K+ S Y+ PGTQT KVPA F++F + + L + LR+++K+ KK Sbjct 417 CCWAFKTHKITSIYKRPGTQTIKKVPAVFNSFVIPQPTSYGLDIGLRRRIKMLFDAKKAP 476 Query 480 KLLQVSEELVMEAKAAFEDAQEEARAEKLREALPPL---VADKGIEAAAEVVCEVEG 533 + ++E V K ++A+ A AE +R ALPPL V + +EA +++ + G Sbjct 477 API-ITEADVAHLKGLQDEAEAVAEAEAVRAALPPLLPEVDKETVEADIDLIMQEAG 532 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Salmon pancreas disease virus] Sequence ID: Q8JJX1.1 Length: 2601 Range 1: 15 to 536 Score:424 bits(1089), Expect:3e-132, Method:Compositional matrix adjust., Identities:233/526(44%), Positives:318/526(60%), Gaps:17/526(3%) Query 6 VNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATIL- 64 V V++ P + Q + +FP FEVVA + NDHA ARAFSHLA+K IE ++ I+ Sbjct 15 VTVNLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIGGRQVIVA 74 Query 65 DIGSAPARRMFSEHQ--YHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKDLR 122 DIGSAPARR+ + YH VCP + EDP+R+ YA KL + ++EKI DL+ Sbjct 75 DIGSAPARRIGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVERGDGHLVNEKITDLK 134 Query 123 TVLDTPDA--ETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGF 179 VL+ PD ET S+C ++DV+C ++A+ +V QDVY ++AP TIY QA KG R +YWIGF Sbjct 135 DVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGF 194 Query 180 DTTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSR 239 + F AMAGS+P Y+ NW+D VL A+N+ LC + LSE R K L P Sbjct 195 EPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSGE 254 Query 240 VYFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITG 299 +++SVGST Y E R L+SWHLPS FH YTCRCDTVVSC GYVVKKITI GI G Sbjct 255 IHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGIVG 314 Query 300 ETVG--YAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQ 357 A +++ +G ++ K +DT+ E+VSFPV TYIPA ICDQMT + A + DA Sbjct 315 IPAKEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTANPVKYSDAV 374 Query 358 KLLVGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLT 417 KLLVGLNQRIV+NG T RN N+M N L+P+ A+ WA E + D+++E+ L T Sbjct 375 KLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEVRRDMEDEQDLYGITSVTT 434 Query 418 YGCLW-AFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTT----SLPMSLRQKLKLA 472 + C+ A+ ++ H+FYR P + + VPA F+ +++ T L L LK A Sbjct 435 WICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRAALSATYLNLPLKQLLLNTLKRA 494 Query 473 LQPKKEEKLLQVSEELVMEAKAAFEDAQEEARAEKLREALPPLVAD 518 ++P ++ + +E L +A E +EE R + A P +AD Sbjct 495 IKP-MDQAIADETEALAHDAAEVHELTEEERRQQA---ANPSYIAD 536 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sleeping disease virus] Sequence ID: Q8QL53.1 Length: 2593 Range 1: 15 to 536 Score:422 bits(1085), Expect:1e-131, Method:Compositional matrix adjust., Identities:232/526(44%), Positives:315/526(59%), Gaps:17/526(3%) Query 6 VNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATIL- 64 V VD+ P + Q + +FP FEVVA + NDHA ARAFSHLA+K IE ++ I+ Sbjct 15 VTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVA 74 Query 65 DIGSAPARRMFSEHQ--YHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKDLR 122 DIGSAPARR+ + YH VCP + EDP+R+ YA KL K + ++I DL+ Sbjct 75 DIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEKGDGHLVSDRITDLK 134 Query 123 TVLDTPDA--ETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGF 179 VL+ PD ET S+C ++DV+C ++A+ +V QDVY ++AP TIY QA KG R +YWIGF Sbjct 135 DVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGF 194 Query 180 DTTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSR 239 + F AMAGS+P Y+ NW+D VL A+N+ LC + LSE R K L P Sbjct 195 EPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSGE 254 Query 240 VYFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITG 299 +++SVGST Y E R L+SWHLPS FH YTCRCDTVVSC GYVVKKITI GI G Sbjct 255 IHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGIVG 314 Query 300 ETVG--YAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQ 357 A +++ +G ++ K +DT+ E+VSFPV TYIPA ICDQMT + A + D Sbjct 315 RPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTADPVKYPDVV 374 Query 358 KLLVGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLT 417 KLLVGLNQRIV+NG T RN N+M N L+P+ A+ WA E + D+++E+ + T Sbjct 375 KLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDMEDEQDMYGVTSVTT 434 Query 418 YGCLW-AFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTT----SLPMSLRQKLKLA 472 + C+ A+ ++ H+FYR P + + VPA F+ +S+ T L L LK A Sbjct 435 WICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRASLSATYLNLPLKQLLLNTLKRA 494 Query 473 LQPKKEEKLLQVSEELVMEAKAAFEDAQEEARAEKLREALPPLVAD 518 ++P ++ L +E +A E +EE R + A P +AD Sbjct 495 IKP-GDQALADETEARAHDAAEVHELTEEEGRQQA---ANPSYIAD 536 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Pepper mild mottle virus (strain Japan)] Sequence ID: P89657.1 Length: 1612 Range 1: 64 to 155 Score:43.5 bits(101), Expect:2e-04, Method:Compositional matrix adjust., Identities:27/92(29%), Positives:41/92(44%), Gaps:8/92(8%) Query 22 KSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILDIGSAPARRMFSEHQY- 80 K++P+F++ H+ A L + + +++P +T DIG A MF Y Sbjct 64 KAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYGSTTYDIGGNFAAHMFKGRDYV 123 Query 81 HCVCP-------MRSPEDPDRMMKYASKLAEK 105 HC P MR D + Y SKLA+K Sbjct 124 HCCMPNMDLRDVMRHNAQKDSIELYLSKLAQK 155 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Pepper mild mottle virus (strain Spain)] Sequence ID: P29098.2 Length: 1612 Range 1: 64 to 155 Score:43.5 bits(101), Expect:2e-04, Method:Compositional matrix adjust., Identities:27/92(29%), Positives:41/92(44%), Gaps:8/92(8%) Query 22 KSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILDIGSAPARRMFSEHQY- 80 K++P+F++ H+ A L + + +++P +T DIG A MF Y Sbjct 64 KAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYGSTTYDIGGNFAAHMFKGRDYV 123 Query 81 HCVCP-------MRSPEDPDRMMKYASKLAEK 105 HC P MR D + Y SKLA+K Sbjct 124 HCCMPNMDLRDVMRHNAQKDSIELYLSKLAQK 155 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Obuda pepper virus] Sequence ID: P90211.1 Length: 1616 Range 1: 45 to 155 Score:36.6 bits(83), Expect:0.026, Method:Compositional matrix adjust., Identities:24/111(22%), Positives:44/111(39%), Gaps:8/111(7%) Query 3 KPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTAT 62 +P +N + + +++P+F++ H+ A L + + ++VP + Sbjct 45 RPKINFSKSINEEQTLIVSQAYPEFQITFYNTQLAVHSLAAGLRSLELEYLMMQVPYGSL 104 Query 63 ILDIGSAPARRMFSEHQY-HCVCP-------MRSPEDPDRMMKYASKLAEK 105 DIG A +F Y HC P MR D + Y S+L + Sbjct 105 TYDIGGNFAAHLFKGRDYVHCCMPNLDLRDIMRHENQKDSVATYLSRLKAR 155 >RecName: Full=Replicase large subunit; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=Methyltransferase/RNA helicase [Potato mop-top virus Sw] Sequence ID: Q9QBU0.3 Length: 1812 Range 1: 69 to 147 Score:36.6 bits(83), Expect:0.028, Method:Compositional matrix adjust., Identities:23/79(29%), Positives:31/79(39%), Gaps:2/79(2%) Query 20 LQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILDIGSAPARRMFSEHQ 79 L + FP+ VV V H+ A A + + +I P I DIG A + Sbjct 69 LAELFPERRVVTSSVHRGTHSMAAAMRKIETDVIFTSFPKNGVIYDIGGNWATHAKRDDG 128 Query 80 --YHCVCPMRSPEDPDRMM 96 HC CP+ D R M Sbjct 129 GFVHCCCPILDFRDAQRKM 147 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mild green mosaic virus] Sequence ID: P18339.2 Length: 1609 Range 1: 45 to 153 Score:36.2 bits(82), Expect:0.041, Method:Compositional matrix adjust., Identities:26/109(24%), Positives:43/109(39%), Gaps:8/109(7%) Query 3 KPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTAT 62 +P VN + + ++P+F++ H+ A L + + L+VP + Sbjct 45 RPKVNFSKTISEEQTLLVSNAYPEFQITFYNTQNAVHSLAGGLRALELEYLMLQVPYGSP 104 Query 63 ILDIGSAPARRMFSEHQY-HCVCP-------MRSPEDPDRMMKYASKLA 103 DIG A +F Y HC P MR D + Y S+L+ Sbjct 105 TYDIGGNFAAHLFKGRDYVHCCMPNLDIRDIMRHEGQKDSIEMYLSRLS 153 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tomato brown rugose fruit virus Tom1-Jo] Sequence ID: A0A0S2T050.1 Length: 1615 Range 1: 64 to 206 Score:35.4 bits(80), Expect:0.057, Method:Compositional matrix adjust., Identities:34/147(23%), Positives:57/147(38%), Gaps:16/147(10%) Query 22 KSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILDIGSAPARRMFSEHQY- 80 +++P+F++ H+ A L + + +++P + DIG A +F Y Sbjct 64 RAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYGSLTYDIGGNFASHLFKGRAYV 123 Query 81 HCVCP-------MRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKDLRTVLDTPDA--- 130 HC P MR D + Y S+L E+ K+ N ++ D +TPD Sbjct 124 HCCMPNLDVRDIMRHEGQKDSIELYLSRL-ERGNKVV-PNFQKEAFD--RYAETPDEVVC 179 Query 131 -ETPSLCFHNDVTCNMRAEYSVMQDVY 156 T C H V R + +Y Sbjct 180 HSTFQTCTHQQVENTGRVYAIALHSIY 206 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tomato mosaic virus (strain S-1)] Sequence ID: Q9YKD6.1 Length: 1616 Range 1: 64 to 152 Score:35.0 bits(79), Expect:0.093, Method:Compositional matrix adjust., Identities:22/89(25%), Positives:37/89(41%), Gaps:8/89(8%) Query 22 KSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILDIGSAPARRMFSEHQY- 80 K++P+F++ H+ A L + + +++P + DIG A +F Y Sbjct 64 KAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYGSLTYDIGGNFASHLFKGRAYV 123 Query 81 HCVCP-------MRSPEDPDRMMKYASKL 102 HC P MR D + Y S+L Sbjct 124 HCCMPNLDVRDIMRHEGQKDSIELYLSRL 152 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tomato mosaic virus (strain Kazakh K2)] Sequence ID: P89676.1 Length: 1616 Range 1: 64 to 152 Score:34.7 bits(78), Expect:0.099, Method:Compositional matrix adjust., Identities:22/89(25%), Positives:37/89(41%), Gaps:8/89(8%) Query 22 KSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILDIGSAPARRMFSEHQY- 80 K++P+F++ H+ A L + + +++P + DIG A +F Y Sbjct 64 KAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYGSLTYDIGGNFASHLFKGRAYV 123 Query 81 HCVCP-------MRSPEDPDRMMKYASKL 102 HC P MR D + Y S+L Sbjct 124 HCCMPNLDVRDIMRHEGQKDSIELYLSRL 152 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tomato mosaic virus (strain Kazakh K1)] Sequence ID: Q9Q1T8.2 Length: 1616 Range 1: 64 to 152 Score:34.7 bits(78), Expect:0.100, Method:Compositional matrix adjust., Identities:22/89(25%), Positives:37/89(41%), Gaps:8/89(8%) Query 22 KSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILDIGSAPARRMFSEHQY- 80 K++P+F++ H+ A L + + +++P + DIG A +F Y Sbjct 64 KAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYGSLTYDIGGNFASHLFKGRAYV 123 Query 81 HCVCP-------MRSPEDPDRMMKYASKL 102 HC P MR D + Y S+L Sbjct 124 HCCMPNLDVRDIMRHEGQKDSIELYLSRL 152 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mosaic virus strain tomato/L] Sequence ID: P03587.2 Length: 1616 Range 1: 64 to 152 Score:34.7 bits(78), Expect:0.100, Method:Compositional matrix adjust., Identities:22/89(25%), Positives:37/89(41%), Gaps:8/89(8%) Query 22 KSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILDIGSAPARRMFSEHQY- 80 K++P+F++ H+ A L + + +++P + DIG A +F Y Sbjct 64 KAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYGSLTYDIGGNFASHLFKGRAYV 123 Query 81 HCVCP-------MRSPEDPDRMMKYASKL 102 HC P MR D + Y S+L Sbjct 124 HCCMPNLDVRDIMRHEGQKDSIELYLSRL 152 >RecName: Full=Alpha-A protein; Includes: RecName: Full=Methyltransferase; Includes: RecName: Full=NTPase/helicase [Barley stripe mosaic virus] Sequence ID: P17595.1 Length: 1139 Range 1: 71 to 149 Score:34.7 bits(78), Expect:0.10, Method:Compositional matrix adjust., Identities:21/79(27%), Positives:37/79(46%), Gaps:3/79(3%) Query 20 LQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTAT-ILDIGSAPARRM--FS 76 L ++P++ V + H+ A F L ++ + VP T + DIG M + Sbjct 71 LINAYPEYAVSSSACESGTHSMAACFRFLETEYLLDMVPMKETFVYDIGGNWFSHMKFRA 130 Query 77 EHQYHCVCPMRSPEDPDRM 95 + + HC CP+ S D +R+ Sbjct 131 DREIHCCCPILSMRDSERL 149 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mosaic virus (vulgare)] Sequence ID: P03586.2 Length: 1616 Range 1: 64 to 161 Score:34.3 bits(77), Expect:0.14, Method:Compositional matrix adjust., Identities:22/98(22%), Positives:39/98(39%), Gaps:8/98(8%) Query 22 KSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILDIGSAPARRMFSEHQY- 80 +++P+F++ H+ A L + + +++P + DIG A +F Y Sbjct 64 RAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYGSLTYDIGGNFASHLFKGRAYV 123 Query 81 HCVCP-------MRSPEDPDRMMKYASKLAEKACKITN 111 HC P MR D + Y S+L + N Sbjct 124 HCCMPNLDVRDIMRHEGQKDSIELYLSRLERGGKTVPN 161 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mosaic virus strain Korean] Sequence ID: P30738.2 Length: 1616 Range 1: 64 to 161 Score:34.3 bits(77), Expect:0.15, Method:Compositional matrix adjust., Identities:22/98(22%), Positives:39/98(39%), Gaps:8/98(8%) Query 22 KSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILDIGSAPARRMFSEHQY- 80 +++P+F++ H+ A L + + +++P + DIG A +F Y Sbjct 64 RAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYGSLTYDIGGNFASHLFKGRAYV 123 Query 81 HCVCP-------MRSPEDPDRMMKYASKLAEKACKITN 111 HC P MR D + Y S+L + N Sbjct 124 HCCMPNLDVRDIMRHEGQKDSIELYLSRLERGGKTVPN 161 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mosaic virus strain OM] Sequence ID: O93058.1 Length: 1616 Range 1: 64 to 161 Score:34.3 bits(77), Expect:0.15, Method:Compositional matrix adjust., Identities:22/98(22%), Positives:39/98(39%), Gaps:8/98(8%) Query 22 KSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILDIGSAPARRMFSEHQY- 80 +++P+F++ H+ A L + + +++P + DIG A +F Y Sbjct 64 RAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYGSLTYDIGGNFASHLFKGRAYV 123 Query 81 HCVCP-------MRSPEDPDRMMKYASKLAEKACKITN 111 HC P MR D + Y S+L + N Sbjct 124 HCCMPNLDVRDIMRHEGQKDSIELYLSRLERGGKTVPN 161 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mosaic virus strain B395A] Sequence ID: Q9YQ08.1 Length: 1616 Range 1: 64 to 161 Score:34.3 bits(77), Expect:0.15, Method:Compositional matrix adjust., Identities:22/98(22%), Positives:39/98(39%), Gaps:8/98(8%) Query 22 KSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILDIGSAPARRMFSEHQY- 80 +++P+F++ H+ A L + + +++P + DIG A +F Y Sbjct 64 RAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYGSLTYDIGGNFASHLFKGRAYV 123 Query 81 HCVCP-------MRSPEDPDRMMKYASKLAEKACKITN 111 HC P MR D + Y S+L + N Sbjct 124 HCCMPNLDVRDIMRHEGQKDSIELYLSRLERGGKTVPN 161 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Odontoglossum ringspot virus (isolate Singapore 1)] Sequence ID: Q84133.2 Length: 1612 Range 1: 45 to 137 Score:34.3 bits(77), Expect:0.16, Method:Compositional matrix adjust., Identities:20/93(22%), Positives:37/93(39%), Gaps:1/93(1%) Query 3 KPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTAT 62 +P VN ++Q ++P+FE+ H+ A L + + +++P + Sbjct 45 RPRVNFSKVISQEQIIQATNAYPEFEITFYNTQLAVHSMAGGLRALELEYLMMQIPFGSI 104 Query 63 ILDIGSAPARRMFSEHQY-HCVCPMRSPEDPDR 94 DIG + ++ Y HC P D R Sbjct 105 TYDIGGNFSAHLYKGRDYVHCCMPNLDIRDVAR 137 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Odontoglossum ringspot virus (isolate Korean Cy)] Sequence ID: P89659.2 Length: 1612 Range 1: 45 to 137 Score:34.3 bits(77), Expect:0.16, Method:Compositional matrix adjust., Identities:20/93(22%), Positives:37/93(39%), Gaps:1/93(1%) Query 3 KPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTAT 62 +P VN ++Q ++P+FE+ H+ A L + + +++P + Sbjct 45 RPKVNFSKVISQEQIIQATNAYPEFEITFYNTQLAVHSMAGGLRALELEYLMMQIPFGSI 104 Query 63 ILDIGSAPARRMFSEHQY-HCVCPMRSPEDPDR 94 DIG + ++ Y HC P D R Sbjct 105 TYDIGGNFSAHLYKGRDYVHCCMPNLDIRDVAR 137 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mosaic virus strain Rakkyo] Sequence ID: Q98745.1 Length: 1616 Range 1: 64 to 152 Score:33.9 bits(76), Expect:0.18, Method:Compositional matrix adjust., Identities:21/89(24%), Positives:37/89(41%), Gaps:8/89(8%) Query 22 KSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILDIGSAPARRMFSEHQY- 80 +++P+F++ H+ A L + + +++P + DIG A +F Y Sbjct 64 RAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYGSLTYDIGGNFASHLFKGRAYV 123 Query 81 HCVCP-------MRSPEDPDRMMKYASKL 102 HC P MR D + Y S+L Sbjct 124 HCCMPNLDVRDIMRHEGQKDSIELYLSRL 152 >RecName: Full=Replicase large subunit; AltName: Full=182 kDa protein; Contains: RecName: Full=Replicase small subunit; AltName: Full=125 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Youcai mosaic virus] Sequence ID: Q66220.2 Length: 1597 Range 1: 65 to 137 Score:32.7 bits(73), Expect:0.48, Method:Compositional matrix adjust., Identities:19/73(26%), Positives:30/73(41%), Gaps:1/73(1%) Query 23 SFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILDIGSAPARRMFSEHQY-H 81 ++P+FE+ H+ A L + + ++VP + DIG A +F Y H Sbjct 65 AYPEFEISFTHTQQAVHSLAGGLRTLELEYLMMQVPFGSLTYDIGGNFAAHLFKGRDYVH 124 Query 82 CVCPMRSPEDPDR 94 C P D R Sbjct 125 CCMPNLDVRDIAR 137 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Sunn-hemp mosaic virus] Sequence ID: P89202.2 Length: 1629 Range 1: 59 to 153 Score:32.0 bits(71), Expect:0.70, Method:Compositional matrix adjust., Identities:22/95(23%), Positives:36/95(37%), Gaps:1/95(1%) Query 20 LQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILDI-GSAPARRMFSEH 78 ++ +P+F++ + HA A L + + VP A DI G+ PA M Sbjct 59 VRGGYPEFQIEFTGASNTSHAMAAGLRGLELEYLYTLVPYGAVSYDIGGNFPAHMMKGRS 118 Query 79 QYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKN 113 HC P D R Y + + +K+ Sbjct 119 YVHCCNPALDARDLARNENYRISIENYLSRFEDKS 153 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Turnip vein-clearing virus] Sequence ID: Q88920.1 Length: 1601 Range 1: 65 to 137 Score:32.0 bits(71), Expect:0.77, Method:Compositional matrix adjust., Identities:18/73(25%), Positives:30/73(41%), Gaps:1/73(1%) Query 23 SFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILDIGSAPARRMFSEHQY-H 81 ++P+FE+ H+ A L + + ++VP + DIG + +F Y H Sbjct 65 AYPEFEISFTHTQSAVHSLAGGLRSLELEYLMMQVPFGSLTYDIGGNFSAHLFKGRDYVH 124 Query 82 CVCPMRSPEDPDR 94 C P D R Sbjct 125 CCMPNLDVRDIAR 137 >RecName: Full=Replication protein 1a; Includes: RecName: Full=ATP-dependent helicase; Includes: RecName: Full=Methyltransferase [Olive latent virus 2 isolate Italy] Sequence ID: Q83943.1 Length: 908 Range 1: 116 to 246 Score:31.6 bits(70), Expect:0.88, Method:Compositional matrix adjust., Identities:34/146(23%), Positives:60/146(41%), Gaps:18/146(12%) Query 81 HCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKDLRTVLDTPDAETPSLCFHND 140 H CP+ +P D + +L ++ T+ ++K +L P LC H Sbjct 116 HSCCPLLNPRDGAHQTR--RELNMESYLRTHGPKYDKFNEL---------SRPDLCHHRA 164 Query 141 VTCNMRAEYSVMQDVYINAPGTIYHQAMK--GVRTLYW-IGFDTTQFMFSAMAGSYPAYN 197 C++RA+ ++ D + +AM G+ L+ I FD + + M G N Sbjct 165 EDCSVRAKAALSVDSAYDMGLKNTCKAMHRAGIELLHGNILFDPDMLIEAKMEGFVAGMN 224 Query 198 TNWADEKVLEARNIGLCSTKLSEGRT 223 +W + R+ GL S+ L G + Sbjct 225 YHWKKTR----RSTGLMSSFLEMGSS 246 >RecName: Full=Uncharacterized 7.6 kDa protein [Vaccinia virus Copenhagen] Sequence ID: P20549.1 Length: 67 Range 1: 1 to 23 Score:27.7 bits(60), Expect:1.9, Method:Composition-based stats., Identities:10/23(43%), Positives:14/23(60%), Gaps:0/23(0%) Query 168 MKGVRTLYWIGFDTTQFMFSAMA 190 M+ VR YW+G D F+F A + Sbjct 1 MRDVRPEYWMGLDVAVFLFFATS 23 >RecName: Full=Replication protein 1a; Includes: RecName: Full=ATP-dependent helicase; Includes: RecName: Full=Methyltransferase [Peanut stunt virus (strain J)] Sequence ID: P28726.1 Length: 1005 Range 1: 109 to 360 Score:30.4 bits(67), Expect:2.1, Method:Compositional matrix adjust., Identities:63/293(22%), Positives:103/293(35%), Gaps:63/293(21%) Query 63 ILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKDLR 122 +LD G + H HC P D M++ +L I N Sbjct 109 VLDFGGSWVTHFLRGHNVHCCSPCLGVRDK---MRHTERLLSMRKAIINDP--------- 156 Query 123 TVLDTPDAETPSLCFHNDVTCNMRAEYSV-MQDVY----------INAPGTIYHQAMKGV 171 T + P+ C + C+++A Y++ + Y +NA GT + +KG Sbjct 157 ---QTFEGRQPNFCTNPAEKCDVQAHYAISIHGGYDMGFEGLCRAMNAHGTTF---LKG- 209 Query 172 RTLYWIG---FDTTQFMFSAMAGSYPAYNTNWADEK--VLEARNIGLCSTKLSEGRTGKL 226 T+ + G FD + F+ P +W K E N ++KL+ +GK Sbjct 210 -TMMFDGAMLFDDSGFI--------PELKCHWRKIKNAFSEKENASTFTSKLNLAVSGKT 260 Query 227 SIMRKKELKPGSRVYFSVGSTL-YPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEG 285 I F ST+ Y +++S+ F NG YT + V G Sbjct 261 LIAFD----------FENESTMSYIHEWKNIKSFLTDQTFSYNG---YTYGIERCVIYAG 307 Query 286 YVVKKITISPG-----ITGETVGYAVTHNSEGFLLCKVTDTVKGERVSFPVCT 333 + KI PG + V + + G + D V+ + V P+ T Sbjct 308 ILTYKIIGVPGECPPEVIRHCVWFPSLKDYVGLKIPVSADLVEWKTVRLPLST 360 >RecName: Full=Replicase large subunit; AltName: Full=186 kDa protein; Contains: RecName: Full=Replicase small subunit; AltName: Full=129 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Cucumber green mottle mosaic virus (watermelon strain SH)] Sequence ID: P69514.1 Length: 1648 Range 1: 65 to 147 Score:30.4 bits(67), Expect:2.4, Method:Compositional matrix adjust., Identities:18/83(22%), Positives:35/83(42%), Gaps:1/83(1%) Query 23 SFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILDIGSAPARRMFSEHQY-H 81 ++P+F + + H+ A L + + ++VP + DIG + +F Y H Sbjct 65 AYPEFSISFTATKNSVHSLAGGLRLLELEYMMMQVPYGSPCYDIGGNYTQHLFKGRSYVH 124 Query 82 CVCPMRSPEDPDRMMKYASKLAE 104 C P +D R + Y + + Sbjct 125 CCNPCLDLKDVARNVMYNDMITQ 147 >RecName: Full=Replication protein 1a; Includes: RecName: Full=ATP-dependent helicase; Includes: RecName: Full=Methyltransferase [Cucumber mosaic virus (strain Ixora)] Sequence ID: Q66121.1 Length: 993 Range 1: 109 to 182 Score:30.0 bits(66), Expect:2.5, Method:Compositional matrix adjust., Identities:20/92(22%), Positives:35/92(38%), Gaps:21/92(22%) Query 63 ILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKDLR 122 +LD G + H HC P D M++A +L N+ + Sbjct 109 VLDFGGSWVTHYLRGHNVHCCSPCLGIRDK---MRHAERLM---------NMR------K 150 Query 123 TVLDTP---DAETPSLCFHNDVTCNMRAEYSV 151 +L+ P D P C H C+++A +++ Sbjct 151 IILNDPQQFDGRQPDFCTHPAAECDVQAHFAI 182 >RecName: Full=Replicase large subunit; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=Methyltransferase/RNA helicase [Peanut clump virus 87/TGTA2] Sequence ID: Q84687.2 Length: 1672 Range 1: 79 to 152 Score:29.6 bits(65), Expect:4.0, Method:Compositional matrix adjust., Identities:18/74(24%), Positives:30/74(40%), Gaps:3/74(4%) Query 24 FPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATIL-DIGS--APARRMFSEHQY 80 +P+F V+ H A L + I+ +P T++ D+G + S+ Sbjct 79 YPEFHVITSNCERGSHTMAAVCRTLETLYIKSLLPVKHTVVWDVGGNWLTHVKYASDQNV 138 Query 81 HCVCPMRSPEDPDR 94 HC CP+ D R Sbjct 139 HCCCPLLDYRDAMR 152 >RecName: Full=Replication protein 1a; Includes: RecName: Full=ATP-dependent helicase; Includes: RecName: Full=Methyltransferase [Cucumber mosaic virus (strain NT9)] Sequence ID: O40976.1 Length: 993 Range 1: 109 to 182 Score:29.6 bits(65), Expect:4.1, Method:Compositional matrix adjust., Identities:20/92(22%), Positives:34/92(36%), Gaps:21/92(22%) Query 63 ILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKDLR 122 +LD G + H HC P D M++A +L N+ + Sbjct 109 VLDFGGSWVTHYLRGHNVHCCSPCLGIRDK---MRHAERLM---------NMR------K 150 Query 123 TVLDTP---DAETPSLCFHNDVTCNMRAEYSV 151 +L+ P D P C H C ++A +++ Sbjct 151 IILNDPQQFDGRQPDFCTHPAADCKVQAHFAI 182 >RecName: Full=Initiator protein NS1; Short=NS1; AltName: Full=NCVP1; AltName: Full=Non-capsid protein NS-1; AltName: Full=Non-structural protein 1; AltName: Full=Non-structural protein NS1 [Feline panleukopenia virus] Sequence ID: P06431.1 Length: 392 Range 1: 267 to 303 Score:28.9 bits(63), Expect:5.4, Method:Compositional matrix adjust., Identities:11/37(30%), Positives:20/37(54%), Gaps:0/37(0%) Query 178 GFDTTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLC 214 G+++T ++ G P ++ NWA+ K+ E N C Sbjct 267 GYESTMANYTHHWGKVPEWDENWAEPKIQEGVNSPGC 303 >RecName: Full=Replicase polyprotein 1ab; Contains: RecName: Full=Leader protease; Short=L-Pro; AltName: Full=Papain-like cysteine proteinase; Short=PCP; Contains: RecName: Full=Methyltransferase/helicase/RNA-directed RNA polymerase [Beet yellows virus isolate Ukraine] Sequence ID: Q08534.2 Length: 3094 Range 1: 660 to 783 Score:28.9 bits(63), Expect:7.1, Method:Compositional matrix adjust., Identities:33/141(23%), Positives:58/141(41%), Gaps:21/141(14%) Query 20 LQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTT---ATILDIGSAPARRM-F 75 L +++PQF + +DH A S+L+E E + ++ DIG P + Sbjct 660 LTRAYPQFNLSFTHSVYSDHPAA-----AGSRLLENETLASMAKSSFSDIGGCPLFHIKR 714 Query 76 SEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKDLRTVLDTPDAETPSL 135 YH P+ +D R + + ++ + L E + R L A S+ Sbjct 715 GSTDYHVCRPIYDMKDAQRRV---------SRELQARGLVENLS--REQLVEAQARV-SV 762 Query 136 CFHNDVTCNMRAEYSVMQDVY 156 C H CN++++ +M VY Sbjct 763 CPHTLGNCNVKSDVLIMVQVY 783 >RecName: Full=Initiator protein NS1; Short=NS1; AltName: Full=NCVP1; AltName: Full=Non-capsid protein NS-1; AltName: Full=Non-structural protein 1; AltName: Full=Non-structural protein NS1 [Mink enteritis virus strain Abashiri] Sequence ID: P27438.1 Length: 668 Range 1: 543 to 579 Score:28.5 bits(62), Expect:7.6, Method:Compositional matrix adjust., Identities:11/37(30%), Positives:20/37(54%), Gaps:0/37(0%) Query 178 GFDTTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLC 214 G+++T ++ G P ++ NWA+ K+ E N C Sbjct 543 GYESTMANYTHHWGKVPEWDENWAEPKIQEGVNSPGC 579 >RecName: Full=Replication protein 1a; Includes: RecName: Full=ATP-dependent helicase; Includes: RecName: Full=Methyltransferase [Alfalfa mosaic virus (strain 425 / isolate Leiden)] Sequence ID: P03589.1 Length: 1126 Range 1: 80 to 157 Score:28.5 bits(62), Expect:7.9, Method:Compositional matrix adjust., Identities:20/78(26%), Positives:31/78(39%), Gaps:2/78(2%) Query 20 LQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTA-TILDIGSAPARRM-FSE 77 L+ +FP V + + H A A L + + T +I+D+G M Sbjct 80 LRANFPGRRTVFSNSSSSSHCFAAAHRLLETDFVYRCFGNTVDSIIDLGGNFVSHMKVKR 139 Query 78 HQYHCVCPMRSPEDPDRM 95 H HC CP+ D R+ Sbjct 140 HNVHCCCPILDARDGARL 157 >RecName: Full=Initiator protein NS1; Short=NS1; AltName: Full=NCVP1; AltName: Full=Non-capsid protein NS-1; AltName: Full=Non-structural protein 1; AltName: Full=Non-structural protein NS1 [Canine parvovirus strain N] Sequence ID: P12929.1 Length: 668 Range 1: 543 to 579 Score:28.5 bits(62), Expect:8.6, Method:Compositional matrix adjust., Identities:11/37(30%), Positives:20/37(54%), Gaps:0/37(0%) Query 178 GFDTTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLC 214 G+++T ++ G P ++ NWA+ K+ E N C Sbjct 543 GYESTMANYTHHWGKVPEWDENWAEPKIQEGINSPGC 579