RID: 3RUATEZT01N Job Title:RdRp acute bee paralysis virus Q9DSN9 Replicase... Program: BLASTP Query: RdRp acute bee paralysis virus Q9DSN9 Replicase polyprotein (2.7.7.48) (3.4.22.-) ID: lcl|Query_75857(amino acid) Length: 135 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Replicase polyprotein [Acute bee paralysis virus... Acute bee pa... NA 1217067 288 288 100% 6e-90 100.00 1906 Q9DSN9.1 RecName: Full=Replicase polyprotein; Contains: RecName:... Cricket para... NA 928300 112 112 99% 1e-28 43.84 1771 Q9IJX4.1 RecName: Full=Replicase polyprotein; Contains: RecName:... Drosophila C... NA 865617 96.3 96.3 98% 6e-23 40.85 1759 O36966.1 RecName: Full=Genome polyprotein; Contains: RecName:... Rice tungro ... NA 337080 75.1 75.1 95% 1e-15 35.11 3471 Q91PP5.1 RecName: Full=Genome polyprotein; Contains: RecName:... Rice tungro ... NA 337081 73.2 73.2 95% 7e-15 34.35 3473 Q83034.1 RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprote... Red clover m... NA 12262 68.6 68.6 98% 3e-13 34.59 1864 P35930.1 RecName: Full=RNA1 polyprotein; AltName: Full=B RNA polyprotei... Cowpea mosai... NA 928299 62.0 62.0 98% 6e-11 30.37 1866 P03600.1 RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains:... Grapevine fa... NA 12274 58.9 58.9 95% 7e-10 31.01 2284 P29149.1 RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprote... Broad bean w... NA 76875 58.9 58.9 98% 7e-10 29.10 1870 Q9WNW0.1 RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains:... Beet ringspo... NA 191547 57.8 57.8 99% 2e-09 27.74 2264 P18522.1 RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains:... Cycas necrot... NA 173976 55.1 55.1 99% 2e-08 26.28 2336 Q8QVV0.1 RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprote... Cowpea sever... NA 31716 53.9 53.9 98% 4e-08 27.61 1858 P36312.1 RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains:... Tomato black... NA 283677 53.9 53.9 99% 4e-08 28.47 2266 Q8B8X3.1 RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains:... Grapevine ch... NA 12273 53.5 53.5 99% 5e-08 26.28 2252 P13025.1 RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprote... Cherry rasp ... NA 650137 51.6 51.6 96% 3e-07 25.53 2250 Q6EWG9.1 RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains:... Arabis mosai... NA 282063 51.2 51.2 95% 3e-07 29.46 2284 Q6W8W5.1 RecName: Full=Genome polyprotein; Contains: RecName:... Parsnip yell... NA 33762 50.4 50.4 96% 7e-07 29.01 3027 Q05057.1 Alignments: >RecName: Full=Replicase polyprotein [Acute bee paralysis virus strain Rothamsted] Sequence ID: Q9DSN9.1 Length: 1906 Range 1: 1638 to 1772 Score:288 bits(736), Expect:6e-90, Method:Compositional matrix adjust., Identities:135/135(100%), Positives:135/135(100%), Gaps:0/135(0%) Query 1 PKVIAGDFSTFDGSLNVCIMEKFADLANEFYDDGSENALIRHVLLMDVYNSTHICGDSVY 60 PKVIAGDFSTFDGSLNVCIMEKFADLANEFYDDGSENALIRHVLLMDVYNSTHICGDSVY Sbjct 1638 PKVIAGDFSTFDGSLNVCIMEKFADLANEFYDDGSENALIRHVLLMDVYNSTHICGDSVY 1697 Query 61 MMTHSQPSGNPATTPLNCFINSMGLRMVFELCSKKYSALNGTKCYVMKDFSKHVSIVSYG 120 MMTHSQPSGNPATTPLNCFINSMGLRMVFELCSKKYSALNGTKCYVMKDFSKHVSIVSYG Sbjct 1698 MMTHSQPSGNPATTPLNCFINSMGLRMVFELCSKKYSALNGTKCYVMKDFSKHVSIVSYG 1757 Query 121 DDNVINFSDEVSEWF 135 DDNVINFSDEVSEWF Sbjct 1758 DDNVINFSDEVSEWF 1772 >RecName: Full=Replicase polyprotein; Contains: RecName: Full=Protein 1A; AltName: Full=CrPV-1A; Contains: RecName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Contains: RecName: Full=Protein 2C; Contains: RecName: Full=Protein 3A; Contains: RecName: Full=Protein 3B; Contains: RecName: Full=3C-like protease; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL [Cricket paralysis virus Teleogryllus commodus/Australia/CrPVVIC/1968] Sequence ID: Q9IJX4.1 Length: 1771 Range 1: 1496 to 1634 Score:112 bits(281), Expect:1e-28, Method:Composition-based stats., Identities:64/146(44%), Positives:84/146(57%), Gaps:19/146(13%) Query 2 KVIAGDFSTFDGSLNVCIMEKFA-DLANEFY-----------DDGSENALIRHVLLMDVY 49 KVIAGDF FDGSL + + F FY +DG N +I L + Sbjct 1496 KVIAGDFGNFDGSL---VAQFFGQSCGKSFYPWFKTFNDVNTEDGKRNLMICIGLWTHIV 1552 Query 50 NSTHICGDSVYMMTHSQPSGNPATTPLNCFINSMGLRMVFELCSKKYSALNGTKCYVMKD 109 +S H GD+VYM THSQPSGNP T +NC NSM +R+V+ L ++K + + MK Sbjct 1553 HSVHSYGDNVYMWTHSQPSGNPFTVIINCLYNSMIMRIVWILLARKLAP----EMQSMKK 1608 Query 110 FSKHVSIVSYGDDNVINFSDEVSEWF 135 F ++VS++SYGDDN +N SD V EWF Sbjct 1609 FRENVSMISYGDDNCLNISDRVVEWF 1634 >RecName: Full=Replicase polyprotein; Contains: RecName: Full=Protein 1A; Contains: RecName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Contains: RecName: Full=Protein 2C; Contains: RecName: Full=Protein 3A; Contains: RecName: Full=Protein 3B; Contains: RecName: Full=3C-like protease; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL [Drosophila C virus strain EB] Sequence ID: O36966.1 Length: 1759 Range 1: 1485 to 1622 Score:96.3 bits(238), Expect:6e-23, Method:Composition-based stats., Identities:58/142(41%), Positives:82/142(57%), Gaps:13/142(9%) Query 3 VIAGDFSTFDGSLNVCIM-----EKFADLANEFYD-DGSENALIRHVLL---MDVYNSTH 53 VIAGDF FDGSL I+ E F +F D + SE I + L + +S H Sbjct 1485 VIAGDFGNFDGSLVAQILWAIFWEIFVVWLKQFIDIENSEGKRILCICLGLWSHLVHSVH 1544 Query 54 ICGDSVYMMTHSQPSGNPATTPLNCFINSMGLRMVFELCSKKYSALNGTKCYVMKDFSKH 113 I D+VYM THSQPSGNP T +NC NS+ +R+ + +K+ + MK F+++ Sbjct 1545 IYEDNVYMWTHSQPSGNPFTVIINCLYNSIIMRLSWIRVMEKFQP----RLKSMKWFNEY 1600 Query 114 VSIVSYGDDNVINFSDEVSEWF 135 V++++YGDDNV+N +V EWF Sbjct 1601 VALITYGDDNVLNIDAKVVEWF 1622 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Putative leader protein; Contains: RecName: Full=Capsid protein 1; Short=CP-1; AltName: Full=22.5 kDa protein; AltName: Full=Coat protein 1; Contains: RecName: Full=Capsid protein 2; Short=CP-2; AltName: Full=26 kDa protein; AltName: Full=Coat protein 2; Contains: RecName: Full=Capsid protein 3; Short=CP-3; AltName: Full=31 kDa protein; AltName: Full=Coat protein 3; Contains: RecName: Full=Putative helicase; AltName: Full=Putative NTP-binding protein; Contains: RecName: Full=Probable picornain 3C-like protease; Short=3C-like protease; Contains: RecName: Full=Probable RNA-directed RNA polymerase [Rice tungro spherical virus (isolate Vt6)] Sequence ID: Q91PP5.1 Length: 3471 Range 1: 3153 to 3278 Score:75.1 bits(183), Expect:1e-15, Method:Compositional matrix adjust., Identities:46/131(35%), Positives:64/131(48%), Gaps:7/131(5%) Query 2 KVIAGDFSTFDGSLNVCIMEKFADLANEFYDDGSENALIRHVLLMDVYNSTHICGDSVYM 61 K AGD+S FDG + I ++ N +YDDG NA RH L+ + + ICGD + Sbjct 3153 KGFAGDYSKFDGIGSPAIYHSIVNVVNAWYDDGEVNARARHSLISSIVHRDGICGDLILR 3212 Query 62 MTHSQPSGNPATTPLNCFINS--MGLRMVFELCSKKYSALNGTKCYVMKDFSKHVSIVSY 119 + PSG T N F+N M L + + S S KDF + IV+Y Sbjct 3213 YSQGMPSGFAMTVIFNSFVNYYFMALAWMSTVGSSLLSPQGSC-----KDFDTYCKIVAY 3267 Query 120 GDDNVINFSDE 130 GDDNV++ +E Sbjct 3268 GDDNVVSVHEE 3278 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Putative leader protein; Contains: RecName: Full=Capsid protein 1; Short=CP-1; AltName: Full=22.5 kDa protein; AltName: Full=Coat protein 1; Contains: RecName: Full=Capsid protein 2; Short=CP-2; AltName: Full=26 kDa protein; AltName: Full=Coat protein 2; Contains: RecName: Full=Capsid protein 3; Short=CP-3; AltName: Full=31 kDa protein; AltName: Full=Coat protein 3; Contains: RecName: Full=Putative helicase; AltName: Full=Putative NTP-binding protein; Contains: RecName: Full=Probable picornain 3C-like protease; Short=3C-like protease; Contains: RecName: Full=Probable RNA-directed RNA polymerase [Rice tungro spherical virus (isolate A)] Sequence ID: Q83034.1 Length: 3473 Range 1: 3156 to 3281 Score:73.2 bits(178), Expect:7e-15, Method:Compositional matrix adjust., Identities:45/131(34%), Positives:64/131(48%), Gaps:7/131(5%) Query 2 KVIAGDFSTFDGSLNVCIMEKFADLANEFYDDGSENALIRHVLLMDVYNSTHICGDSVYM 61 K AGD+S FDG + I ++ N +Y+DG NA RH L+ + + ICGD + Sbjct 3156 KGFAGDYSKFDGIGSPAIYHSIVNVVNAWYNDGEVNARARHSLISSIVHRDGICGDLILR 3215 Query 62 MTHSQPSGNPATTPLNCFINS--MGLRMVFELCSKKYSALNGTKCYVMKDFSKHVSIVSY 119 + PSG T N F+N M L + + S S KDF + IV+Y Sbjct 3216 YSQGMPSGFAMTVIFNSFVNYYFMALAWMSTVGSSLLSPQGSC-----KDFDTYCKIVAY 3270 Query 120 GDDNVINFSDE 130 GDDNV++ +E Sbjct 3271 GDDNVVSVHEE 3281 >RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprotein B; AltName: Full=P1; Contains: RecName: Full=Protease cofactor; AltName: Full=32 kDa protein; Contains: RecName: Full=Putative helicase; AltName: Full=58 kDa protein; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=24 kDa protein; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=87 kDa protein [Red clover mottle virus] Sequence ID: P35930.1 Length: 1864 Range 1: 1428 to 1556 Score:68.6 bits(166), Expect:3e-13, Method:Compositional matrix adjust., Identities:46/133(35%), Positives:72/133(54%), Gaps:4/133(3%) Query 3 VIAGDFSTFDGSLNVCIMEKFADLANEFYDDGSENALIRHVLLMDVYNSTHICGDSVYMM 62 ++ D+S+FDG L+ IME AD+ N F G+ R LLM + I DSV+ + Sbjct 1428 ILCCDYSSFDGLLSKQIMEMMADMINRFCGGGTLICAKRKNLLMACCSRLAISRDSVWRI 1487 Query 63 THSQPSGNPATTPLNCFINSMGLRMVFELCSKKYSALNGTKCYVMKDFSKHVSIVSYGDD 122 PSG P T N N + +R ++L ++++A N YV + F +S+V+YGDD Sbjct 1488 ECGIPSGFPLTVICNSIFNEILVRYHYKLLLQEHNAPN---MYV-QSFKNLISMVTYGDD 1543 Query 123 NVINFSDEVSEWF 135 N+I+ + V +F Sbjct 1544 NLISVNAVVKPYF 1556 >RecName: Full=RNA1 polyprotein; AltName: Full=B RNA polyprotein; AltName: Full=Bottom component polyprotein; AltName: Full=Genome polyprotein B; AltName: Full=P1; Contains: RecName: Full=Protease cofactor; AltName: Full=32 kDa protein; Contains: RecName: Full=Putative helicase; AltName: Full=58 kDa protein; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=24 kDa protein; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=87 kDa protein [Cowpea mosaic virus strain SB] Sequence ID: P03600.1 Length: 1866 Range 1: 1431 to 1559 Score:62.0 bits(149), Expect:6e-11, Method:Compositional matrix adjust., Identities:41/135(30%), Positives:73/135(54%), Gaps:8/135(5%) Query 3 VIAGDFSTFDGSLNVCIMEKFADLANEF--YDDGSENALIRHVLLMDVYNSTHICGDSVY 60 V+ D+S+FDG L+ +M+ A + NE +D +NA R LLM + IC ++V+ Sbjct 1431 VLCCDYSSFDGLLSKQVMDVIASMINELCGGEDQLKNA--RRNLLMACCSRLAICKNTVW 1488 Query 61 MMTHSQPSGNPATTPLNCFINSMGLRMVFELCSKKYSALNGTKCYVMKDFSKHVSIVSYG 120 + PSG P T +N N + +R ++ ++ A +++ F K + +V+YG Sbjct 1489 RVECGIPSGFPMTVIVNSIFNEILIRYHYKKLMREQQAPE----LMVQSFDKLIGLVTYG 1544 Query 121 DDNVINFSDEVSEWF 135 DDN+I+ + V+ +F Sbjct 1545 DDNLISVNAVVTPYF 1559 >RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains: RecName: Full=P1A protein; Short=1A; AltName: Full=Protease cofactor; Contains: RecName: Full=Putative ATP-dependent helicase; AltName: Full=1B; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=1C-VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=1D-PRO; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=1E-POL [Grapevine fanleaf virus] Sequence ID: P29149.1 Length: 2284 Range 1: 1734 to 1852 Score:58.9 bits(141), Expect:7e-10, Method:Composition-based stats., Identities:40/129(31%), Positives:57/129(44%), Gaps:10/129(7%) Query 7 DFSTFDGSLNVCIMEKFADLANEFYDDGSENALIRHVLLMDVYNSTHICGDSVYMMTHSQ 66 D+ FDG + I+ AD+ N Y D N R LL+ + ICG+ VY Sbjct 1734 DYKAFDGLITEQILSTIADMINAGYRDPVGNRQ-RKNLLLAICGRLSICGNQVYATEAGI 1792 Query 67 PSGNPATTPLNCFINSMGLRMVFELCSKKYSALNGTKCYVMKDFSKHVSIVSYGDDNVIN 126 PSG T LN + +R C KK +C F + V +++YGDDNV Sbjct 1793 PSGCALTVVLNSIFKELLMRY----CFKKIVPPVYKEC-----FDRCVVLITYGDDNVFT 1843 Query 127 FSDEVSEWF 135 + V ++F Sbjct 1844 VAQSVMQYF 1852 >RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprotein B; Contains: RecName: Full=Protease cofactor; Contains: RecName: Full=Putative helicase; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; Contains: RecName: Full=RNA-directed RNA polymerase [Broad bean wilt virus 2] Sequence ID: Q9WNW0.1 Length: 1870 Range 1: 1447 to 1572 Score:58.9 bits(141), Expect:7e-10, Method:Compositional matrix adjust., Identities:39/134(29%), Positives:67/134(50%), Gaps:9/134(6%) Query 3 VIAGDFSTFDGSLNVCIMEKFADL-ANEFYDDGSENALIRHVLLMDVYNSTHICGDSVYM 61 ++ D+S FDG L CIM + ++ A D I++ L++ + +C +Y Sbjct 1447 ILCCDYSRFDGFLPKCIMNEIGNMIARLMKTDEVSRTQIKN-LMLACTSRYAMCNRVLYR 1505 Query 62 MTHSQPSGNPATTPLNCFINSMGLRMVFELCSKKYSALNGTKCYVMKDFSKHVSIVSYGD 121 + + PSG P T +N +N + ++ + C + + V +F HVS+V YGD Sbjct 1506 VENGIPSGFPLTVIVNSILNEILVKYAYWHCFEDNPS-------VQSNFDAHVSMVVYGD 1558 Query 122 DNVINFSDEVSEWF 135 DN+I+ SD +S F Sbjct 1559 DNLISVSDAISSRF 1572 >RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains: RecName: Full=P1A protein; Short=1A; AltName: Full=Protease cofactor; Contains: RecName: Full=Putative ATP-dependent helicase; AltName: Full=1B; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=1C-VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=1D-PRO; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=1E-POL [Beet ringspot virus] Sequence ID: P18522.1 Length: 2264 Range 1: 1714 to 1841 Score:57.8 bits(138), Expect:2e-09, Method:Composition-based stats., Identities:38/137(28%), Positives:63/137(45%), Gaps:12/137(8%) Query 2 KVIAGDFSTFDGSLNVCIMEKFADLANEFYDDGSENALI---RHVLLMDVYNSTHICGDS 58 + I D+S FDG LN ++E A + N Y E+ + R+ +LM + G Sbjct 1714 EAINCDYSGFDGLLNAQVIECIAKMINRLYALSGESEVQQAQRYNMLMALVGRYAFVGPE 1773 Query 59 VYMMTHSQPSGNPATTPLNCFINSMGLRMVFELCSKKYSALNGTKCYVMKDFSKHVSIVS 118 VY + PSG T +N N + +R ++ + K F++ V ++ Sbjct 1774 VYKVNCGLPSGFALTVVVNSVFNEILIRYAYKKLAPKPE---------RNRFNQVVCLLV 1824 Query 119 YGDDNVINFSDEVSEWF 135 YGDDN+I+ S ++ WF Sbjct 1825 YGDDNLISVSPSIASWF 1841 >RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains: RecName: Full=P1A protein; Short=1A; AltName: Full=Protease cofactor; Contains: RecName: Full=Putative ATP-dependent helicase; AltName: Full=1B; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=1C-VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=1D-PRO; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=1E-POL [Cycas necrotic stunt virus] Sequence ID: Q8QVV0.1 Length: 2336 Range 1: 1772 to 1899 Score:55.1 bits(131), Expect:2e-08, Method:Composition-based stats., Identities:36/137(26%), Positives:66/137(48%), Gaps:12/137(8%) Query 2 KVIAGDFSTFDGSLNVCIMEKFADLANEFYDDGSENALI---RHVLLMDVYNSTHICGDS 58 + I D+S+FDG LN ++ A++ N Y E + R+ ++ ++ I G Sbjct 1772 RAINCDYSSFDGLLNSQVVSCIANMINSMYHSPEETVVSKRQRYNMINALFGRLAITGQE 1831 Query 59 VYMMTHSQPSGNPATTPLNCFINSMGLRMVFELCSKKYSALNGTKCYVMKDFSKHVSIVS 118 V + PSG T +N N + +R F K L + FS +V+++ Sbjct 1832 VMRVRAGLPSGFALTVVINSVFNEILMRYCF-----KVLVLGPQR----NSFSTYVTLLV 1882 Query 119 YGDDNVINFSDEVSEWF 135 YGDDN+++ +D+++ +F Sbjct 1883 YGDDNLMSCTDKIAIYF 1899 >RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprotein B; AltName: Full=P1; Contains: RecName: Full=Protease cofactor; AltName: Full=32 kDa protein; Contains: RecName: Full=Putative helicase; AltName: Full=58 kDa protein; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=24 kDa protein; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=87 kDa protein [Cowpea severe mosaic virus (strain DG)] Sequence ID: P36312.1 Length: 1858 Range 1: 1421 to 1549 Score:53.9 bits(128), Expect:4e-08, Method:Compositional matrix adjust., Identities:37/134(28%), Positives:64/134(47%), Gaps:6/134(4%) Query 3 VIAGDFSTFDGSLNVCIMEKFADLANEFYDDGSENALIRHVLLMDVYNSTHICGDSVYMM 62 ++ D+S+FDG L +M +++ NE S R LLM + +C V+ + Sbjct 1421 ILCCDYSSFDGLLTKQVMHLMSEMINELCGGSSRLKQQRTNLLMACCSRYALCKGEVWRV 1480 Query 63 THSQPSGNPATTPLNCFINSMGLRMVF-ELCSKKYSALNGTKCYVMKDFSKHVSIVSYGD 121 PSG P T N N + +R + ++C + + + T Y FS V +V+YGD Sbjct 1481 ECGIPSGFPLTVICNSIFNELLVRYSYIKICQQ--ARVPATITY---GFSTFVKMVTYGD 1535 Query 122 DNVINFSDEVSEWF 135 DN+++ ++ F Sbjct 1536 DNLLSVQSAITHVF 1549 >RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains: RecName: Full=P1A protein; Short=1A; AltName: Full=protease cofactor; Contains: RecName: Full=Putative ATP-dependent helicase; AltName: Full=1B; AltName: Full=NTP-binding protein; Short=NTB; AltName: Full=membrane-binding protein; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=1C-VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=1D-PRO; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=1E-POL [Tomato black ring virus (strain MJ)] Sequence ID: Q8B8X3.1 Length: 2266 Range 1: 1716 to 1843 Score:53.9 bits(128), Expect:4e-08, Method:Composition-based stats., Identities:39/137(28%), Positives:62/137(45%), Gaps:12/137(8%) Query 2 KVIAGDFSTFDGSLNVCIMEKFADLANEFYDDGSENALI---RHVLLMDVYNSTHICGDS 58 + I D+S FDG LN ++E A + N Y E+ + R+ +LM + G Sbjct 1716 EAINCDYSGFDGLLNPQLIECIARMINRLYALSGESDVQQAQRYNMLMALVGRYAFVGQQ 1775 Query 59 VYMMTHSQPSGNPATTPLNCFINSMGLRMVFELCSKKYSALNGTKCYVMKDFSKHVSIVS 118 VY + PSG T +N N + +R ++ K A + F V ++ Sbjct 1776 VYKVNCGLPSGFALTVVVNSVFNEILIRYAYK---KLAPAPERNR------FGSTVCLLV 1826 Query 119 YGDDNVINFSDEVSEWF 135 YGDDN+I+ S ++ WF Sbjct 1827 YGDDNLISVSPSIASWF 1843 >RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains: RecName: Full=P1A protein; Short=1A; AltName: Full=Protease cofactor; Contains: RecName: Full=Putative ATP-dependent helicase; AltName: Full=1B; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=1C-VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=1D-PRO; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=1E-POL [Grapevine chrome mosaic virus] Sequence ID: P13025.1 Length: 2252 Range 1: 1698 to 1825 Score:53.5 bits(127), Expect:5e-08, Method:Composition-based stats., Identities:36/137(26%), Positives:61/137(44%), Gaps:12/137(8%) Query 2 KVIAGDFSTFDGSLNVCIMEKFADLANEFYDDGSENALI---RHVLLMDVYNSTHICGDS 58 + I D+S FDG L ++E A + N Y E+ ++ R ++M + + G Sbjct 1698 EAINCDYSGFDGLLTPQLVEMMAKMINRLYLRSGESEVMQAQRLNMIMALCGRYALVGTQ 1757 Query 59 VYMMTHSQPSGNPATTPLNCFINSMGLRMVFELCSKKYSALNGTKCYVMKDFSKHVSIVS 118 VY + PSG T +N N + +R ++ + F +V ++ Sbjct 1758 VYKVNCGLPSGFALTVVMNSIFNEILIRYAYKTLAPTPEK---------NSFGINVCLLV 1808 Query 119 YGDDNVINFSDEVSEWF 135 YGDDN+I+ S V+ WF Sbjct 1809 YGDDNLISVSPAVASWF 1825 >RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprotein B; AltName: Full=P1; Contains: RecName: Full=Protease cofactor; Contains: RecName: Full=Putative helicase; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; Contains: RecName: Full=RNA-directed RNA polymerase [Cherry rasp leaf virus isolate potato] Sequence ID: Q6EWG9.1 Length: 2250 Range 1: 1819 to 1956 Score:51.6 bits(122), Expect:3e-07, Method:Composition-based stats., Identities:36/141(26%), Positives:69/141(48%), Gaps:14/141(9%) Query 6 GDFSTFDGSLNVCIMEKFADLANEFYDDG----------SENALIRHVLLMDVYNSTH-I 54 GD+S FDG +++ N+FY++ S N+ + LL D+ ++ + + Sbjct 1819 GDYSRFDGITPRNVLQGIVKRINKFYNNKNSLAITDSNLSINSDLARSLLTDMASTRYGL 1878 Query 55 CGDSVYMMTHSQPSGNPATTPLNCFINSMGLRMVFELCSKKYSALNGTKCYVMKDFSKHV 114 ++ +T PSG P T +N +N+ + + K+ LN Y + F + V Sbjct 1879 TNGDLWYVTSGIPSGFPLTVIVNSLVNNFFIHFSYIKLMKR-EELN--SLYPLHSFRQMV 1935 Query 115 SIVSYGDDNVINFSDEVSEWF 135 + +YGDDN+++ +D ++E F Sbjct 1936 AYATYGDDNLVSVNDVITEKF 1956 >RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains: RecName: Full=P1A protein; Short=1A; AltName: Full=Protease cofactor; Contains: RecName: Full=Putative ATP-dependent helicase; AltName: Full=1B; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=1C-VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=1D-PRO; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=1E-POL [Arabis mosaic virus strain NW] Sequence ID: Q6W8W5.1 Length: 2284 Range 1: 1733 to 1851 Score:51.2 bits(121), Expect:3e-07, Method:Composition-based stats., Identities:38/129(29%), Positives:54/129(41%), Gaps:10/129(7%) Query 7 DFSTFDGSLNVCIMEKFADLANEFYDDGSENALIRHVLLMDVYNSTHICGDSVYMMTHSQ 66 D+ FDG + I+ A + N + + N R LLM + ICG VY Sbjct 1733 DYKGFDGLITEQILAVVATMINAGFRNPVSNQQ-RSNLLMAISGRLSICGSQVYETEAGI 1791 Query 67 PSGNPATTPLNCFINSMGLRMVFELCSKKYSALNGTKCYVMKDFSKHVSIVSYGDDNVIN 126 PSG T +N N + +R C KK +C F + V +++YGDDNV Sbjct 1792 PSGCALTVVINSIFNELLMRY----CYKKIVPPIYREC-----FDRCVVLITYGDDNVFT 1842 Query 127 FSDEVSEWF 135 S + F Sbjct 1843 VSQSIMTSF 1851 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Putative leader protein; Contains: RecName: Full=Capsid protein 1; Short=CP-1; AltName: Full=22.5 kDa protein; AltName: Full=Coat protein 1; Contains: RecName: Full=Capsid protein 2; Short=CP-2; AltName: Full=26 kDa protein; AltName: Full=Coat protein 2; Contains: RecName: Full=Capsid protein 3; Short=CP-3; AltName: Full=31 kDa protein; AltName: Full=Coat protein 3; Contains: RecName: Full=Putative helicase; AltName: Full=Putative NTP-binding protein; Contains: RecName: Full=Probable picornain 3C-like protease; Short=3C-like protease; Contains: RecName: Full=Probable RNA-directed RNA polymerase [Parsnip yellow fleck virus (isolate P-121)] Sequence ID: Q05057.1 Length: 3027 Range 1: 2521 to 2645 Score:50.4 bits(119), Expect:7e-07, Method:Compositional matrix adjust., Identities:38/131(29%), Positives:60/131(45%), Gaps:7/131(5%) Query 6 GDFSTFDGSLNVCIMEKFADLANEFYDDGSENALIRHVLLMDVYNSTHICGDSVYMMTHS 65 GDF+ FDG + ++LAN FY G+ + R L + N + ++ + Sbjct 2521 GDFANFDGMFHPSSFSMVSELANIFY--GNFLSTERDNLTRMLTNRFSLMKGAILRVPGG 2578 Query 66 QPSGNPATTPLNCFINSMGLRMVFELCSKKYSALNGTKCYVMK-DFSKHVSIVSYGDDNV 124 PSG P T N FIN L+ + + ++ NG + +F K+V YGDDN+ Sbjct 2579 GPSGFPMTVIFNSFINLFYLQSAWIMLAR----FNGRQDISHPCNFPKYVRACVYGDDNI 2634 Query 125 INFSDEVSEWF 135 + EV W+ Sbjct 2635 VAIKMEVLPWY 2645