TBLASTN 2.2.15 [Oct-15-2006]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= LIVK_ECOLI P04816 RecName: Full=Leucine-specific-binding
protein; Short=LS-BP; Short=L-BP; Flags: Precursor;
(369 letters)
Database: 3gen
884 sequences; 12,243,887 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE008864 AE006468 |AE008864| Salmonella typhimurium LT2, section... 682 0.0
>AE008864 AE006468 |AE008864| Salmonella typhimurium LT2, section 168 of
220 of the complete genome.
Length = 22530
Score = 682 bits (1761), Expect = 0.0
Identities = 338/369 (91%), Positives = 354/369 (95%)
Frame = -2
Query: 1 MKRNAKTIIAGMIALAISHTAMADDIKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKG 60
MKR AKTIIAG++ALA+S AMADDIKVA+VGAMSGP+AQWGDMEFNGARQAIKDINAKG
Sbjct: 11264 MKRKAKTIIAGIVALAVSQGAMADDIKVAIVGAMSGPVAQWGDMEFNGARQAIKDINAKG 11085
Query: 61 GIKGDKLVGVEYDDACDPKQAVAVANKIVNDGIKYVIGHLCSSSTQPASDIYEDEGILMI 120
GIKGDKLVGVEYDDACDPKQAVAVANKIVNDGI+YVIGHLCSSSTQPASDIYEDEGILMI
Sbjct: 11084 GIKGDKLVGVEYDDACDPKQAVAVANKIVNDGIQYVIGHLCSSSTQPASDIYEDEGILMI 10905
Query: 121 SPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARS 180
SPGATNPELTQRGYQ+IMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARS
Sbjct: 10904 SPGATNPELTQRGYQYIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARS 10725
Query: 181 VQDGLKAANANVVFFDGITAGEKDFSALIARLKKENIDFVYYGGYYPEMGQMLRQARSVG 240
VQDGLK NAN+VFFDGITAGEKDFSALIARL+KENIDFVYYGGYYPEMGQMLRQAR+ G
Sbjct: 10724 VQDGLKQGNANIVFFDGITAGEKDFSALIARLQKENIDFVYYGGYYPEMGQMLRQARANG 10545
Query: 241 LKTQFMGPEGVGNASLSNIAGDAAEGMLVTMPKRYDQDPANQGIVDALKADKKDPSGPYV 300
LKTQFMGPEGVGNASLSNIAG AAEGMLVTMPKRYDQDPAN+ IV+ALKADKKDPSGPYV
Sbjct: 10544 LKTQFMGPEGVGNASLSNIAGGAAEGMLVTMPKRYDQDPANKAIVEALKADKKDPSGPYV 10365
Query: 301 WITYAAVQSLATALERTGSDEPLALVKDLKANGANTVIGPLNWDEKGDLKGFDFGVFQWH 360
WITYAAVQSLATA+ R+ S PL LVKDLKANGA+TVIGPL WDEKGDLKGF+FGVFQWH
Sbjct: 10364 WITYAAVQSLATAMTRSASHAPLDLVKDLKANGADTVIGPLKWDEKGDLKGFEFGVFQWH 10185
Query: 361 ADGSSTAAK 369
ADGSST AK
Sbjct: 10184 ADGSSTVAK 10158
Score = 576 bits (1485), Expect = e-165
Identities = 283/369 (76%), Positives = 318/369 (86%)
Frame = -2
Query: 1 MKRNAKTIIAGMIALAISHTAMADDIKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKG 60
M KT++AG IAL++SH A ADDIKVAVVGAMSGP+AQ+GD EF GA QAI DINAKG
Sbjct: 13367 MNMKGKTLLAGCIALSLSHMAFADDIKVAVVGAMSGPVAQYGDQEFTGAEQAIADINAKG 13188
Query: 61 GIKGDKLVGVEYDDACDPKQAVAVANKIVNDGIKYVIGHLCSSSTQPASDIYEDEGILMI 120
GIKGDKLV V+YDDACDPKQAVAVANK+VNDGIKYVIGHLCSSSTQPASDIYEDEGILMI
Sbjct: 13187 GIKGDKLVAVKYDDACDPKQAVAVANKVVNDGIKYVIGHLCSSSTQPASDIYEDEGILMI 13008
Query: 121 SPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARS 180
+P AT PELT RGY+ ++RT GLDS QGPTAAKYILE VKPQRIAIIHDKQQYGEGLAR+
Sbjct: 13007 TPAATAPELTARGYKLVLRTTGLDSDQGPTAAKYILEKVKPQRIAIIHDKQQYGEGLARA 12828
Query: 181 VQDGLKAANANVVFFDGITAGEKDFSALIARLKKENIDFVYYGGYYPEMGQMLRQARSVG 240
VQDGLK NVVFFDGITAGEKDFS L+ARLKKENIDFVYYGGY+PEMGQ+LRQ+R+ G
Sbjct: 12827 VQDGLKKGGVNVVFFDGITAGEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQSRAAG 12648
Query: 241 LKTQFMGPEGVGNASLSNIAGDAAEGMLVTMPKRYDQDPANQGIVDALKADKKDPSGPYV 300
LKTQFMGPEGV N SLSNIAG++AEG+LVT PK YDQ PAN+ IVDA+KA K+DPSG +V
Sbjct: 12647 LKTQFMGPEGVANVSLSNIAGESAEGLLVTKPKNYDQVPANKPIVDAIKAKKQDPSGAFV 12468
Query: 301 WITYAAVQSLATALERTGSDEPLALVKDLKANGANTVIGPLNWDEKGDLKGFDFGVFQWH 360
W TYAA+QSL L SD+P + K LK +TV+GPL+WDEKGDLKGF+FGVF WH
Sbjct: 12467 WTTYAALQSLQAGLNH--SDDPAEIAKYLKGATVDTVMGPLSWDEKGDLKGFEFGVFDWH 12294
Query: 361 ADGSSTAAK 369
A+G++T AK
Sbjct: 12293 ANGTATDAK 12267
Database: 3gen
Posted date: Feb 20, 2009 4:01 PM
Number of letters in database: 12,243,887
Number of sequences in database: 884
Lambda K H
0.315 0.133 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 884
Number of Hits to DB: 4,405,752
Number of extensions: 59907
Number of successful extensions: 307
Number of sequences better than 1.0e-03: 1
Number of HSP's gapped: 306
Number of HSP's successfully gapped: 2
Length of query: 369
Length of database: 4,081,295
Length adjustment: 95
Effective length of query: 274
Effective length of database: 3,997,315
Effective search space: 1095264310
Effective search space used: 1095264310
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 47 (22.7 bits)