BLASTN 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= M29378 M29378.1 E.coli leucine-specific binding protein (livK) gene, 5' end. (1107 letters) Database: 3gen 884 sequences; 12,243,887 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AE008864 AE006468 |AE008864| Salmonella typhimurium LT2, section... 642 0.0 >AE008864 AE006468 |AE008864| Salmonella typhimurium LT2, section 168 of 220 of the complete genome. Length = 22530 Score = 642 bits (324), Expect = 0.0 Identities = 897/1088 (82%) Strand = Plus / Minus Query: 1 atgaaacggaatgcgaaaactatcatcgcagggatgattgcactggcaatttcacacacc 60 ||||||||||| |||||||| || ||||||||||| ||||| | ||| | || || Sbjct: 11264 atgaaacggaaagcgaaaacaataatcgcagggattgttgcattagcagtctcgcagggg 11205 Query: 61 gctatggctgacgatattaaagtcgccgttgtcggcgcgatgtccggcccgattgcccag 120 || ||||| || ||||||||||||||| | ||||| ||||||||||||||| | || || Sbjct: 11204 gcaatggcagatgatattaaagtcgccatagtcggggcgatgtccggcccggtagcgcaa 11145 Query: 121 tggggcataatggaatttaacggcgcggagcaggcgattaaagacattaatgccaaaggg 180 |||||| |||||||||||||||||| ||||| ||||||||||| || || ||||| Sbjct: 11144 tggggcgatatggaatttaacggcgcgcgccaggccattaaagacatcaacgcgaaaggc 11085 Query: 181 ggaattaagggcgataaactggttggcgtggaatatgacgacgcatgcgacccgaaacaa 240 || ||||| |||||||| ||||| ||||| || || || || || ||||| || ||||| Sbjct: 11084 gggattaaaggcgataagctggtcggcgtagagtacgatgatgcctgcgatccaaaacag 11025 Query: 241 gccgttgcggtcgccaacaaaatcgttaatgacggcattaaatacgttattggtcatctg 300 || || ||||| ||||||||||||||||| ||||| ||| | |||||||||||||| || Sbjct: 11024 gcggtggcggtggccaacaaaatcgttaacgacggtattcagtacgttattggtcacttg 10965 Query: 301 tgttcttcttctacccagcctgcgtcagacatctatgaagacgaaggtattctaatgatc 360 |||||||||||||| ||||| || || || ||||||||||| ||||||||||| |||||| Sbjct: 10964 tgttcttcttctactcagccagcatccgatatctatgaagatgaaggtattctgatgatc 10905 Query: 361 tcgccgggagcgaccgcgccggaactaacccaacgcggttatcaacacattatgcgtact 420 || ||||| ||||| ||||| || ||||| ||||| ||||| ||||||||||||| Sbjct: 10904 tccccgggggcgactaacccggagctgacccagcgcggctatcagtacattatgcgtacc 10845 Query: 421 gccgggctggactcttcccaggggccaacggcggcaaaatacattcttgagacggtgaag 480 ||||| |||||||| |||||||||||||| || || |||||||| || || |||||||| Sbjct: 10844 gccggcctggactcctcccaggggccaacagccgcgaaatacatcctggaaacggtgaaa 10785 Query: 481 ccccagcgcatcgccatcatccacgacaaacaacagtatggcgaagggctggcgcgttcg 540 || ||||||||||| ||||| ||||| ||||| || || |||||||| |||||||| || Sbjct: 10784 ccgcagcgcatcgctatcattcacgataaacagcaatacggcgaaggactggcgcgctcc 10725 Query: 541 gtgcaggacgggctgaaagcggctaacgccaacgtcgtcttcttcgatggtattaccgcc 600 |||||||| || ||||| || || ||||| | ||||| || |||||||||||||| Sbjct: 10724 gtgcaggatggcctgaagcagggcaatgccaatattgtcttttttgatggtattaccgct 10665 Query: 601 ggggagaaagatttctccgcgctgatcgcccgcctgaaaaaagaaaacatcgacttcgtt 660 || || |||||||||||||| ||||| |||||| || ||||||| || |||||||| || Sbjct: 10664 ggcgaaaaagatttctccgccctgattgcccgcttgcaaaaagagaatatcgactttgtg 10605 Query: 661 tactacggcggttactacccggaaatggggcagatgctgcgccaggcccgttccgttggc 720 || |||||||| |||||||||||||||||||||||||| |||||||| || | |||| Sbjct: 10604 tattacggcggctactacccggaaatggggcagatgctacgccaggcgcgggctaatggc 10545 Query: 721 ctgaaaacccagtttatggggccggaaggtgtgggtaatgcgtcgttgtcgaacattgcc 780 |||||||| || ||||||||||||||||| || ||||| |||||| |||| || ||||| Sbjct: 10544 ctgaaaacgcaatttatggggccggaaggcgtaggtaacgcgtcgctgtccaatattgcg 10485 Query: 781 ggtgatgccgccgaaggcatgttggtcactatgccaaaacgctatgaccaggatccggca 840 || | ||| || |||||||||||||| || ||||||||||| ||||||||||| ||||| Sbjct: 10484 ggcggtgcggcggaaggcatgttggtgacgatgccaaaacgttatgaccaggacccggcg 10425 Query: 841 aaccagggcatcgttgatgcgctgaaagcagacaagaaagatccgtccgggccttatgtc 900 || | | || || || ||||||||||| |||||||||||||| ||| || || ||| Sbjct: 10424 aataaagcgattgtcgaagcgctgaaagccgacaagaaagatcccagcggtccgtacgtc 10365 Query: 901 tggatcacctacgcggcggtgcaatctctggcgactgcccttgagcgtaccggcagcgat 960 |||||||||||||| || || || || |||||||| || | ||||| || |||| || Sbjct: 10364 tggatcacctacgccgccgtccagtcactggcgaccgcaatgacgcgtagcgccagccat 10305 Query: 961 gagccgctggcgctggtgaaagatttaaaagctaacggtgcaaacaccgtgattgggccg 1020 | ||||||| |||||||||||| | ||||||||||| || | ||||| ||||||||| Sbjct: 10304 gctccgctggatctggtgaaagatcttaaagctaacggggctgataccgttattgggccg 10245 Query: 1021 ctgaactgggatgaaaaaggcgatcttaagggatttgattttggtgtgttccagtggcac 1080 ||||| |||||||||||||||||||||||||||||||| ||||| || |||||||||||| Sbjct: 10244 ctgaaatgggatgaaaaaggcgatcttaagggatttgaatttggcgtcttccagtggcac 10185 Query: 1081 gccgacgg 1088 |||||||| Sbjct: 10184 gccgacgg 10177 Score = 198 bits (100), Expect = 2e-50 Identities = 391/488 (80%) Strand = Plus / Minus Query: 70 gacgatattaaagtcgccgttgtcggcgcgatgtccggcccgattgcccagtggggcata 129 ||||| ||||||||||| |||||||||||||||||||| ||| | || |||| ||| Sbjct: 13298 gacgacattaaagtcgcggttgtcggcgcgatgtccggtccggtggcgcagtatggcgac 13239 Query: 130 atggaatttaacggcgcggagcaggcgattaaagacattaatgccaaagggggaattaag 189 |||||||| ||| ||||||||||| ||| || || ||||| ||||| || ||||| Sbjct: 13238 caggaatttaccggtgcggagcaggcaattgccgatatcaatgcgaaaggcggtattaaa 13179 Query: 190 ggcgataaactggttggcgtggaatatgacgacgcatgcgacccgaaacaagccgttgcg 249 |||||||| || || | ||| ||||||||||||| |||||||||||||| || || || Sbjct: 13178 ggcgataagctcgtcgcggtgaaatatgacgacgcctgcgacccgaaacaggcggtagct 13119 Query: 250 gtcgccaacaaaatcgttaatgacggcattaaatacgttattggtcatctgtgttcttct 309 ||||| |||||| | || || |||||||| || || ||||| ||||| | ||||| ||| Sbjct: 13118 gtcgctaacaaagtggtgaacgacggcatcaagtatgttatcggtcacttatgttcctct 13059 Query: 310 tctacccagcctgcgtcagacatctatgaagacgaaggtattctaatgatctcgccggga 369 || || ||||| ||||| || ||||| ||||||||||| || || ||||| | |||| Sbjct: 13058 tccacacagccagcgtctgatatctacgaagacgaaggcatcctgatgataaccccggcg 12999 Query: 370 gcgaccgcgccggaactaacccaacgcggttatcaacacattatgcgtactgccgggctg 429 |||||||||||||| || ||| ||||| ||| | | || |||| || |||| ||| Sbjct: 12998 gcgaccgcgccggagctgaccgcgcgcggctataagctggttttgcgcaccaccggtctg 12939 Query: 430 gactcttcccaggggccaacggcggcaaaatacattcttgagacggtgaagccccagcgc 489 |||||| ||||||||||||||||||||| || ||||| |||| ||| || || |||||| Sbjct: 12938 gactctgaccaggggccaacggcggcaaagtatattctggagaaggtaaaaccgcagcgc 12879 Query: 490 atcgccatcatccacgacaaacaacagtatggcgaagggctggcgcgttcggtgcaggac 549 ||||| || |||||||| || || ||||| ||||||||||||||||| ||||||||||| Sbjct: 12878 atcgcgattatccacgataagcagcagtacggcgaagggctggcgcgcgcggtgcaggac 12819 Query: 550 gggctgaa 557 || ||||| Sbjct: 12818 ggtctgaa 12811 Score = 135 bits (68), Expect = 2e-31 Identities = 155/184 (84%) Strand = Plus / Minus Query: 571 aacgtcgtcttcttcgatggtattaccgccggggagaaagatttctccgcgctgatcgcc 630 |||||||| ||||| || || || ||||| || || |||||||||||| | ||| | || Sbjct: 12797 aacgtcgtattctttgacggcatcaccgctggcgaaaaagatttctccactctggttgcg 12738 Query: 631 cgcctgaaaaaagaaaacatcgacttcgtttactacggcggttactacccggaaatgggg 690 |||||||| ||||| || |||||||| || |||||||||||||| |||||||||||||| Sbjct: 12737 cgcctgaagaaagagaatatcgactttgtctactacggcggttatcacccggaaatgggg 12678 Query: 691 cagatgctgcgccaggcccgttccgttggcctgaaaacccagtttatggggccggaaggt 750 ||||| |||||||| |||| ||| || ||||||||||||||||||||||||||||| Sbjct: 12677 cagattttgcgccagtcccgcgccgcagggctgaaaacccagtttatggggccggaaggg 12618 Query: 751 gtgg 754 |||| Sbjct: 12617 gtgg 12614 Database: 3gen Posted date: Feb 20, 2009 4:01 PM Number of letters in database: 12,243,887 Number of sequences in database: 884 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 884 Number of Hits to DB: 182,118 Number of extensions: 12339 Number of successful extensions: 119 Number of sequences better than 1.0e-03: 1 Number of HSP's gapped: 117 Number of HSP's successfully gapped: 9 Length of query: 1107 Length of database: 12,243,887 Length adjustment: 17 Effective length of query: 1090 Effective length of database: 12,228,859 Effective search space: 13329456310 Effective search space used: 13329456310 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 15 (30.2 bits) S2: 22 (44.1 bits)