TBLASTN 2.2.15 [Oct-15-2006]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= LIVK_ECOLI P04816 RecName: Full=Leucine-specific-binding
protein; Short=LS-BP; Short=L-BP; Flags: Precursor;
         (369 letters)

Database: st 
           220 sequences; 4,870,572 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE008864 AE006468 |AE008864| Salmonella typhimurium LT2, section...   682   0.0  

>AE008864 AE006468 |AE008864| Salmonella typhimurium LT2, section 168 of
             220 of the complete genome.
          Length = 22530

 Score =  682 bits (1761), Expect = 0.0
 Identities = 338/369 (91%), Positives = 354/369 (95%)
 Frame = -2

Query: 1     MKRNAKTIIAGMIALAISHTAMADDIKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKG 60
             MKR AKTIIAG++ALA+S  AMADDIKVA+VGAMSGP+AQWGDMEFNGARQAIKDINAKG
Sbjct: 11264 MKRKAKTIIAGIVALAVSQGAMADDIKVAIVGAMSGPVAQWGDMEFNGARQAIKDINAKG 11085

Query: 61    GIKGDKLVGVEYDDACDPKQAVAVANKIVNDGIKYVIGHLCSSSTQPASDIYEDEGILMI 120
             GIKGDKLVGVEYDDACDPKQAVAVANKIVNDGI+YVIGHLCSSSTQPASDIYEDEGILMI
Sbjct: 11084 GIKGDKLVGVEYDDACDPKQAVAVANKIVNDGIQYVIGHLCSSSTQPASDIYEDEGILMI 10905

Query: 121   SPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARS 180
             SPGATNPELTQRGYQ+IMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARS
Sbjct: 10904 SPGATNPELTQRGYQYIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARS 10725

Query: 181   VQDGLKAANANVVFFDGITAGEKDFSALIARLKKENIDFVYYGGYYPEMGQMLRQARSVG 240
             VQDGLK  NAN+VFFDGITAGEKDFSALIARL+KENIDFVYYGGYYPEMGQMLRQAR+ G
Sbjct: 10724 VQDGLKQGNANIVFFDGITAGEKDFSALIARLQKENIDFVYYGGYYPEMGQMLRQARANG 10545

Query: 241   LKTQFMGPEGVGNASLSNIAGDAAEGMLVTMPKRYDQDPANQGIVDALKADKKDPSGPYV 300
             LKTQFMGPEGVGNASLSNIAG AAEGMLVTMPKRYDQDPAN+ IV+ALKADKKDPSGPYV
Sbjct: 10544 LKTQFMGPEGVGNASLSNIAGGAAEGMLVTMPKRYDQDPANKAIVEALKADKKDPSGPYV 10365

Query: 301   WITYAAVQSLATALERTGSDEPLALVKDLKANGANTVIGPLNWDEKGDLKGFDFGVFQWH 360
             WITYAAVQSLATA+ R+ S  PL LVKDLKANGA+TVIGPL WDEKGDLKGF+FGVFQWH
Sbjct: 10364 WITYAAVQSLATAMTRSASHAPLDLVKDLKANGADTVIGPLKWDEKGDLKGFEFGVFQWH 10185

Query: 361   ADGSSTAAK 369
             ADGSST AK
Sbjct: 10184 ADGSSTVAK 10158



 Score =  576 bits (1485), Expect = e-165
 Identities = 283/369 (76%), Positives = 318/369 (86%)
 Frame = -2

Query: 1     MKRNAKTIIAGMIALAISHTAMADDIKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKG 60
             M    KT++AG IAL++SH A ADDIKVAVVGAMSGP+AQ+GD EF GA QAI DINAKG
Sbjct: 13367 MNMKGKTLLAGCIALSLSHMAFADDIKVAVVGAMSGPVAQYGDQEFTGAEQAIADINAKG 13188

Query: 61    GIKGDKLVGVEYDDACDPKQAVAVANKIVNDGIKYVIGHLCSSSTQPASDIYEDEGILMI 120
             GIKGDKLV V+YDDACDPKQAVAVANK+VNDGIKYVIGHLCSSSTQPASDIYEDEGILMI
Sbjct: 13187 GIKGDKLVAVKYDDACDPKQAVAVANKVVNDGIKYVIGHLCSSSTQPASDIYEDEGILMI 13008

Query: 121   SPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARS 180
             +P AT PELT RGY+ ++RT GLDS QGPTAAKYILE VKPQRIAIIHDKQQYGEGLAR+
Sbjct: 13007 TPAATAPELTARGYKLVLRTTGLDSDQGPTAAKYILEKVKPQRIAIIHDKQQYGEGLARA 12828

Query: 181   VQDGLKAANANVVFFDGITAGEKDFSALIARLKKENIDFVYYGGYYPEMGQMLRQARSVG 240
             VQDGLK    NVVFFDGITAGEKDFS L+ARLKKENIDFVYYGGY+PEMGQ+LRQ+R+ G
Sbjct: 12827 VQDGLKKGGVNVVFFDGITAGEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQSRAAG 12648

Query: 241   LKTQFMGPEGVGNASLSNIAGDAAEGMLVTMPKRYDQDPANQGIVDALKADKKDPSGPYV 300
             LKTQFMGPEGV N SLSNIAG++AEG+LVT PK YDQ PAN+ IVDA+KA K+DPSG +V
Sbjct: 12647 LKTQFMGPEGVANVSLSNIAGESAEGLLVTKPKNYDQVPANKPIVDAIKAKKQDPSGAFV 12468

Query: 301   WITYAAVQSLATALERTGSDEPLALVKDLKANGANTVIGPLNWDEKGDLKGFDFGVFQWH 360
             W TYAA+QSL   L    SD+P  + K LK    +TV+GPL+WDEKGDLKGF+FGVF WH
Sbjct: 12467 WTTYAALQSLQAGLNH--SDDPAEIAKYLKGATVDTVMGPLSWDEKGDLKGFEFGVFDWH 12294

Query: 361   ADGSSTAAK 369
             A+G++T AK
Sbjct: 12293 ANGTATDAK 12267


  Database: st
    Posted date:  Feb 20, 2009  3:46 PM
  Number of letters in database: 4,870,572
  Number of sequences in database:  220
  
Lambda     K      H
   0.315    0.133    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 220
Number of Hits to DB: 1,703,503
Number of extensions: 22466
Number of successful extensions: 117
Number of sequences better than 1.0e-03: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 2
Length of query: 369
Length of database: 1,623,524
Length adjustment: 89
Effective length of query: 280
Effective length of database: 1,603,944
Effective search space: 449104320
Effective search space used: 449104320
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 49 (23.5 bits)