TBLASTN 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= sw|P09373|PFLB_ECOLI Formate acetyltransferase 1 (EC 2.3.1.54) (Pyruvate formate-lyase 1). (760 letters) Database: 3gen 884 sequences; 12,243,887 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AE008741 AE006468 |AE008741| Salmonella typhimurium LT2, section... 1423 0.0 embl|AE006043|AE006043 Pasteurella multocida subsp. multocida st... 1252 0.0 AE008849 AE006468 |AE008849| Salmonella typhimurium LT2, section... 1181 0.0 AE008735 AE006468 |AE008735| Salmonella typhimurium LT2, section... 155 4e-38 AE008892 AE006468 |AE008892| Salmonella typhimurium LT2, section... 121 9e-28 embl|AE006042|AE006042 Pasteurella multocida subsp. multocida st... 106 2e-23 AE008820 AE006468 |AE008820| Salmonella typhimurium LT2, section... 103 2e-22 AE008893 AE006468 |AE008893| Salmonella typhimurium LT2, section... 30 3.5 AE012298 AE008922 |AE012298| Xanthomonas campestris pv. campestr... 29 4.5 >AE008741 AE006468 |AE008741| Salmonella typhimurium LT2, section 47 of 220 of the complete genome. Length = 25409 Score = 1423 bits (3683), Expect = 0.0 Identities = 707/760 (93%), Positives = 725/760 (95%) Frame = -1 Query: 1 MSELNEKLATAWEGFTKGDWQNEVNVRDFIQKNYTPYEGDESFLAGATEATTTLWDKVME 60 MSELNEKLATAWEGFTKGDWQNEVNVRDFIQKNYTPYEGDESFLAGAT+ATT LWD VME Sbjct: 22238 MSELNEKLATAWEGFTKGDWQNEVNVRDFIQKNYTPYEGDESFLAGATDATTKLWDSVME 22059 Query: 61 GVKLENRTHAPVDFDTAVASTITSHDAGYINKQLEKIVGLQTEAPLKRALIPFGGIKMIE 120 GVK ENRTHAPVDFDT+VASTITSHDAGYINK LEKIVGLQTEAPLKRA+IPFGGIKM+E Sbjct: 22058 GVKQENRTHAPVDFDTSVASTITSHDAGYINKALEKIVGLQTEAPLKRAIIPFGGIKMVE 21879 Query: 121 GSCKAYNRELDPMIKKIFTEYRKTHNQGVFDVYTPDILRCRKSGVLTGLPDAXXXXXXXX 180 GSCKAYNRELDPMIKKIFTEYRKTHNQGVFDVYTPDILRCRKSGVLTGLPDA Sbjct: 21878 GSCKAYNRELDPMIKKIFTEYRKTHNQGVFDVYTPDILRCRKSGVLTGLPDAYGRGRIIG 21699 Query: 181 XXXXVALYGIDYLMKDKLAQFTSLQADLENGVNLEQTIRLREEIAEQHRALGQMKEMAAK 240 VALYGIDYLMKDK AQFTSLQ+DLENGVNLE TIRLREEIAEQHRALGQ+KEMAAK Sbjct: 21698 DYRRVALYGIDYLMKDKFAQFTSLQSDLENGVNLEATIRLREEIAEQHRALGQIKEMAAK 21519 Query: 241 YGYDISGPATNAQEAIQWTYFGYLAAVKSQNGAAMSFGRTSTFLDVYIERDLKAGKITEQ 300 YG DISGPATNAQEAIQWTYFGYLAAVKSQNGAAMSFGR STFLD YIERDLKAGKITEQ Sbjct: 21518 YGCDISGPATNAQEAIQWTYFGYLAAVKSQNGAAMSFGRVSTFLDAYIERDLKAGKITEQ 21339 Query: 301 EAQEMVDHLVMKLRMVRFLRTPEYDELFSGDPIWATESIGGMGLDGRTLVTKNSFRFLNT 360 +AQEM+DHLVMKLRMVRFLRTPEYDELFSGDPIWATESIGGMG+DGRTLVTKNSFRFLNT Sbjct: 21338 DAQEMIDHLVMKLRMVRFLRTPEYDELFSGDPIWATESIGGMGVDGRTLVTKNSFRFLNT 21159 Query: 361 LYTMGPSPEPNMTILWSEKLPLNFKKFAAKVSIDTSSLQYENDDLMRPDFNNDDYAIACC 420 LYTMGPSPEPN+T+LWSEKLPLNFKKFAAKVSIDTSSLQYENDDLMRPDFNNDDYAIACC Sbjct: 21158 LYTMGPSPEPNITVLWSEKLPLNFKKFAAKVSIDTSSLQYENDDLMRPDFNNDDYAIACC 20979 Query: 421 VSPMIVGKQMQFFGARANLAKTMLYAINGGVDEKLKMQVGPKSEPIKGDVLNYDEVMERM 480 VSPMIVGKQMQFFGARANLAKTMLYAINGGVDEKLKMQVGPKSEPIKGDVLN+DEVM+RM Sbjct: 20978 VSPMIVGKQMQFFGARANLAKTMLYAINGGVDEKLKMQVGPKSEPIKGDVLNFDEVMDRM 20799 Query: 481 DHFMDWLAKQYITALNIIHYMHDKYSYEASLMALHDRDVIRTMACGIAGLSVAADSLSAI 540 DHFMDWLAKQY+TALN+IHYMHDKYSYEASLMALHDRDVIRTMACGIAGLSVAADSLSAI Sbjct: 20798 DHFMDWLAKQYVTALNVIHYMHDKYSYEASLMALHDRDVIRTMACGIAGLSVAADSLSAI 20619 Query: 541 KYAKVKPIRDEDGLAIDFEIEGEYPQFGNNDPRVDDLAVDLVERFMKKIQKLHTYRDAIP 600 KYAKVKPIRDEDGLAIDFEIEGEYPQFGNND RVDD+AVDLVERFMKKIQKL TYR AIP Sbjct: 20618 KYAKVKPIRDEDGLAIDFEIEGEYPQFGNNDARVDDMAVDLVERFMKKIQKLTTYRGAIP 20439 Query: 601 TQSVLTITSNVVYGKKTGNTPDGRRXXXXXXXXXXXMHGRDQKGAVASLTSVAKLPFAYA 660 TQSVLTITSNVVYGKKTGNTPDGRR MHGRDQKGAVASLTSVAKLPFAYA Sbjct: 20438 TQSVLTITSNVVYGKKTGNTPDGRRAGAPFGPGANPMHGRDQKGAVASLTSVAKLPFAYA 20259 Query: 661 KDGISYTFSIVPNALGKDDEVRKTNLAGLMDGYFHHEASIEGGQHLNVNVMNREMLLDAM 720 KDGISYTFSIVPNALGKDDEVRKTNLAGLMDGYFHHEASIEGGQHLNVNVMNREMLLDAM Sbjct: 20258 KDGISYTFSIVPNALGKDDEVRKTNLAGLMDGYFHHEASIEGGQHLNVNVMNREMLLDAM 20079 Query: 721 ENPEKYPQLTIRVSGYAVRFNSLTKEQQQDVITRTFTQSM 760 E+PEKYPQLTIRVSGYAVRFNSLTKEQQQDVITRTFTQ+M Sbjct: 20078 EHPEKYPQLTIRVSGYAVRFNSLTKEQQQDVITRTFTQTM 19959 >embl|AE006043|AE006043 Pasteurella multocida subsp. multocida str. Pm70 section 10 of 204 of the complete genome. Length = 10719 Score = 1252 bits (3239), Expect = 0.0 Identities = 620/774 (80%), Positives = 675/774 (87%), Gaps = 14/774 (1%) Frame = +1 Query: 1 MSELNEKLATAWEGFTKGDWQNEVNVRDFIQKNYTPYEGDESFLAGATEATTTLWDKVME 60 MS+LNE AWEGFT GDWQ EVNVRDFIQKNYTPYEGDESFLA ATEATT LW+ VME Sbjct: 1162 MSQLNETQQKAWEGFTGGDWQTEVNVRDFIQKNYTPYEGDESFLADATEATTKLWNDVME 1341 Query: 61 GVKLENRTHAPVDFDTAVASTITSHDAGYINKQLEKIVGLQTEAPLKRALIPFGGIKMIE 120 +K+EN+TH P D D STITSH GYI+K LEKIVGLQT+APLKRA++PFGGI M++ Sbjct: 1342 KIKVENKTHEPYDIDCDTPSTITSHAPGYIDKSLEKIVGLQTDAPLKRAIMPFGGINMVK 1521 Query: 121 GSCKAYNRELDPMIKKIFTEYRKTHNQGVFDVYTPDILRCRKSGVLTGLPDAXXXXXXXX 180 GSCK Y REL P +++IFTEYRKTHNQGVFDVYTPDILRCRKSGV+TGLPDA Sbjct: 1522 GSCKVYRRELKPEVEQIFTEYRKTHNQGVFDVYTPDILRCRKSGVITGLPDAYGRGRIIG 1701 Query: 181 XXXXVALYGIDYLMKDKLAQFTSLQADLENGVNLEQTIRLREEIAEQHRALGQMKEMAAK 240 +ALYG D+LMKDK QFTSLQ LE G +++ TI+LREEIAEQHRALG+MKEMAA Sbjct: 1702 DYRRMALYGADFLMKDKFNQFTSLQDKLERGEDIQATIQLREEIAEQHRALGKMKEMAAS 1881 Query: 241 YGYDISGPATNAQEAIQWTYFGYLAAVKSQNGAAMSFGRTSTFLDVYIERDLKAGKITEQ 300 YGYDISGPATNA EA+QWTYF YLAAVKSQNGAAMSFGR STFLD+YIERDLKAGKITEQ Sbjct: 1882 YGYDISGPATNAHEAVQWTYFAYLAAVKSQNGAAMSFGRVSTFLDIYIERDLKAGKITEQ 2061 Query: 301 EAQEMVDHLVMKLRMVRFLRTPEYDELFSGDPIWATESIGGMGLDGRTLVTKNSFRFLNT 360 EAQE++DHLVMKLRMVRFLRTPEYD+LFSGDP+WATE++ GMGLDGRTLVTKNSFR L+T Sbjct: 2062 EAQELIDHLVMKLRMVRFLRTPEYDQLFSGDPMWATETLAGMGLDGRTLVTKNSFRILHT 2241 Query: 361 LYTMGPSPEPNMTILWSEKLPLNFKKFAAKVSIDTSSLQYENDDLMRPDFNNDDYAIACC 420 LYTMGPSPEPN+TILWSEKLP FK++AAKVSIDTSS+QYENDDLMRPDF NDDYAIACC Sbjct: 2242 LYTMGPSPEPNLTILWSEKLPEGFKRYAAKVSIDTSSVQYENDDLMRPDFQNDDYAIACC 2421 Query: 421 VSPMIVGKQMQFFGARANLAKTMLYAINGGVDEKLKMQVGPKSEPIKGDVLNYDEVMERM 480 VSPMIVGK MQFFGARANLAKT+LYAINGGVDEK QVGPK++PI + L+YD+VM R+ Sbjct: 2422 VSPMIVGKMMQFFGARANLAKTLLYAINGGVDEKSGDQVGPKTDPITSEYLDYDDVMTRL 2601 Query: 481 DHFMDWLAKQYITALNIIHYMHDKYSYEASLMALHDRDVIRTMACGIAGLSVAADSLSAI 540 D FMDWLAKQY+TALNIIH+MHDKY+YEA+LMALHDRDV RTMACGIAGLSVAADSLSAI Sbjct: 2602 DSFMDWLAKQYVTALNIIHFMHDKYAYEAALMALHDRDVFRTMACGIAGLSVAADSLSAI 2781 Query: 541 KYAKVKPIRDE--------------DGLAIDFEIEGEYPQFGNNDPRVDDLAVDLVERFM 586 KYAKVKP+R + +AIDFEIEGEYPQFGNND RVD++A DLVERFM Sbjct: 2782 KYAKVKPVRGDIEIKNKAGEVVGIAKDVAIDFEIEGEYPQFGNNDNRVDEIACDLVERFM 2961 Query: 587 KKIQKLHTYRDAIPTQSVLTITSNVVYGKKTGNTPDGRRXXXXXXXXXXXMHGRDQKGAV 646 KKIQKL TYR+A PTQSVLTITSNVVYGKKTGNTPDGRR MHGRDQKGAV Sbjct: 2962 KKIQKLGTYRNATPTQSVLTITSNVVYGKKTGNTPDGRRSGAPFGPGANPMHGRDQKGAV 3141 Query: 647 ASLTSVAKLPFAYAKDGISYTFSIVPNALGKDDEVRKTNLAGLMDGYFHHEASIEGGQHL 706 ASLTSVAKLPFAYAKDGISYTFSIVPNALGKD E +K NLAGLMDGYFHHEA+IEGGQHL Sbjct: 3142 ASLTSVAKLPFAYAKDGISYTFSIVPNALGKDYEAQKRNLAGLMDGYFHHEATIEGGQHL 3321 Query: 707 NVNVMNREMLLDAMENPEKYPQLTIRVSGYAVRFNSLTKEQQQDVITRTFTQSM 760 NVNVMNREMLLDAMENPEKYPQLTIRVSGYAVRFNSLTKEQQQDVITRTFTQ+M Sbjct: 3322 NVNVMNREMLLDAMENPEKYPQLTIRVSGYAVRFNSLTKEQQQDVITRTFTQAM 3483 >AE008849 AE006468 |AE008849| Salmonella typhimurium LT2, section 153 of 220 of the complete genome. Length = 20878 Score = 1181 bits (3055), Expect = 0.0 Identities = 575/752 (76%), Positives = 652/752 (86%) Frame = -3 Query: 9 ATAWEGFTKGDWQNEVNVRDFIQKNYTPYEGDESFLAGATEATTTLWDKVMEGVKLENRT 68 A AW F DW+ E+NVRDFIQ NYTPYEGDESFLA AT ATT LW+KVM G+++EN T Sbjct: 9179 AEAWRDFKGTDWKEEINVRDFIQHNYTPYEGDESFLADATPATTALWEKVMAGIRIENAT 9000 Query: 69 HAPVDFDTAVASTITSHDAGYINKQLEKIVGLQTEAPLKRALIPFGGIKMIEGSCKAYNR 128 HAPVDFDT +A+TIT+HDAGYI K+LEKIVGLQT+ PLKRAL PFGG+ MI+ S AY R Sbjct: 8999 HAPVDFDTNIATTITAHDAGYIEKELEKIVGLQTDKPLKRALHPFGGVNMIKSSFHAYGR 8820 Query: 129 ELDPMIKKIFTEYRKTHNQGVFDVYTPDILRCRKSGVLTGLPDAXXXXXXXXXXXXVALY 188 E+D + FT+ RKTHNQGVFDVY+PD+LRCRKSGVLTGLPD VALY Sbjct: 8819 EMDADFEYTFTDLRKTHNQGVFDVYSPDMLRCRKSGVLTGLPDGYGRGRIIGDYRRVALY 8640 Query: 189 GIDYLMKDKLAQFTSLQADLENGVNLEQTIRLREEIAEQHRALGQMKEMAAKYGYDISGP 248 GI YL++++ QF LQ++LE G NLE TIRLREE+AE RAL QM+EMAAKYGYDIS P Sbjct: 8639 GIRYLVRERELQFADLQSNLEQGQNLEATIRLREELAEHRRALLQMQEMAAKYGYDISRP 8460 Query: 249 ATNAQEAIQWTYFGYLAAVKSQNGAAMSFGRTSTFLDVYIERDLKAGKITEQEAQEMVDH 308 A NAQEA+QW YF YLAAVKSQNG AMS GRT++FLD+YIERD AG +TEQ+AQE++DH Sbjct: 8459 ARNAQEAVQWLYFAYLAAVKSQNGGAMSLGRTASFLDIYIERDFNAGLLTEQQAQELIDH 8280 Query: 309 LVMKLRMVRFLRTPEYDELFSGDPIWATESIGGMGLDGRTLVTKNSFRFLNTLYTMGPSP 368 +MK+RMVRFLRTPE+D LFSGDPIWATE IGGMGLDGRTLVTKNSFR+L+TL+TMGP+P Sbjct: 8279 FIMKIRMVRFLRTPEFDSLFSGDPIWATEVIGGMGLDGRTLVTKNSFRYLHTLHTMGPAP 8100 Query: 369 EPNMTILWSEKLPLNFKKFAAKVSIDTSSLQYENDDLMRPDFNNDDYAIACCVSPMIVGK 428 EPN+TILWSE LP+ FKK+AA+VSI TSSLQYENDDLMR DFN+DDYAIACCVSPM++GK Sbjct: 8099 EPNLTILWSEALPVAFKKYAAQVSIVTSSLQYENDDLMRTDFNSDDYAIACCVSPMVIGK 7920 Query: 429 QMQFFGARANLAKTMLYAINGGVDEKLKMQVGPKSEPIKGDVLNYDEVMERMDHFMDWLA 488 QMQFFGARANLAKT+LYAINGGVDEKLK+QVGPK+ P+ +VL+YD VME +DHFMDWLA Sbjct: 7919 QMQFFGARANLAKTLLYAINGGVDEKLKIQVGPKTAPLTDEVLDYDAVMESLDHFMDWLA 7740 Query: 489 KQYITALNIIHYMHDKYSYEASLMALHDRDVIRTMACGIAGLSVAADSLSAIKYAKVKPI 548 QYI+ALNIIHYMHDKYSYEASLMALHDRDV RTMACGIAGLSVAADSLSAI+YA+VKPI Sbjct: 7739 VQYISALNIIHYMHDKYSYEASLMALHDRDVYRTMACGIAGLSVAADSLSAIRYAQVKPI 7560 Query: 549 RDEDGLAIDFEIEGEYPQFGNNDPRVDDLAVDLVERFMKKIQKLHTYRDAIPTQSVLTIT 608 RDE+GLAIDF IEGEYPQ+GNND RVD +A DLV+RFM+KI L TYR+A+PTQS+LTIT Sbjct: 7559 RDENGLAIDFAIEGEYPQYGNNDERVDSIACDLVKRFMQKISVLPTYRNAVPTQSILTIT 7380 Query: 609 SNVVYGKKTGNTPDGRRXXXXXXXXXXXMHGRDQKGAVASLTSVAKLPFAYAKDGISYTF 668 SNVVYG+KTGNTPDGRR MHGRD+KGAVASLTSVAKLPF YAKDGISYTF Sbjct: 7379 SNVVYGQKTGNTPDGRRAGTPFAPGANPMHGRDRKGAVASLTSVAKLPFTYAKDGISYTF 7200 Query: 669 SIVPNALGKDDEVRKTNLAGLMDGYFHHEASIEGGQHLNVNVMNREMLLDAMENPEKYPQ 728 SIVP ALGK+D VRKTNL GL+DGYFHHEA +EGGQHLNVNVMNREMLLDA+E+PE YP Sbjct: 7199 SIVPAALGKEDAVRKTNLVGLLDGYFHHEAQVEGGQHLNVNVMNREMLLDAIEHPENYPN 7020 Query: 729 LTIRVSGYAVRFNSLTKEQQQDVITRTFTQSM 760 LTIRVSGYAVRFN+LT+EQQQDVI+RTFTQ+M Sbjct: 7019 LTIRVSGYAVRFNALTREQQQDVISRTFTQAM 6924 >AE008735 AE006468 |AE008735| Salmonella typhimurium LT2, section 43 of 220 of the complete genome. Length = 21697 Score = 155 bits (392), Expect = 4e-38 Identities = 146/563 (25%), Positives = 252/563 (44%), Gaps = 55/563 (9%) Frame = -1 Query: 248 PATNAQEAIQWTYFGYLAAVKSQNGAAMSFGRTSTFLDVYIERDLKAGKITEQE-AQEMV 306 P +A+Q YF L NG ++SFGR +L Y RD++ + ++E A E++ Sbjct: 6109 PPQTFWQALQLCYFIQLILQIESNGHSVSFGRMDQYLYPYYRRDVELNQTLDREHAIELL 5930 Query: 307 DHLVMKLRMVRFLRTPEYDELFSGDPIWATESIGGMGL-DGRTLVTKN--SFRFLNTLYT 363 +KL V +R+ + + +G P++ +IGG L +G+ + N S+ L + Sbjct: 5929 HSCWLKLLEVNKIRSGSHSKASAGSPLYQNVTIGGQKLINGQPMDAVNPLSYAILESCGR 5750 Query: 364 MGPSPEPNMTILWSEKLPLNFKKFAAKV-SIDTSSLQYENDDLMRPDF--------NNDD 414 + S +PN+++ + + +F +V + ND+++ P+F + D Sbjct: 5749 LR-STQPNLSVRYHAGMSNDFLDACVQVIRCGFGMPAFNNDEIVIPEFIKLGIEPQDAYD 5573 Query: 415 YAIACCVSPMIVGKQMQFFGARA------NLAKTMLYAINGGVDEKLKMQVGPKSEPIK- 467 YA C+ + GK +G R N A+ ML A+ GG D P+ + + Sbjct: 5572 YAAIGCIETAVGGK----WGYRCTGMSFINFARVMLAALEGGRDATSGKVFLPQEKALSA 5405 Query: 468 GDVLNYDEVMERMDHFMDWLAKQYITALNIIHYMHDKYSYEASLMALHDRDVIRTMACG- 526 G+ N+DEVM D + + ++ I ++ M ++ ++ AL D + R + Sbjct: 5404 GNFNNFDEVMAAWDTQIRYYTRKSIEIEYVVDTMLEENVHDILCSALVDDCIERAKSIKQ 5225 Query: 527 -------IAGLSVAADSLSAIKYAKVKPIRDEDG----------LAIDFE---------- 559 ++GL V +L A VK + E G LA DF+ Sbjct: 5224 GGAKYDWVSGLQVGIANLGN-SLAAVKKLVFEQGVIGQQQLAAALADDFDGLTHEQLRQR 5048 Query: 560 -IEGEYPQFGNNDPRVDDLAVDLVERFMKKIQKLHTYRDAIPT------QSVLTITSNVV 612 I G P++GN+D VD L + ++ ++++ H R +I++NV Sbjct: 5047 LINGA-PKYGNDDDTVDTLLARAYQTYIDELKQYHNPRYGRGPVGGNYYAGTSSISANVP 4871 Query: 613 YGKKTGNTPDGRRXXXXXXXXXXXMHGRDQKGAVASLTSVAKLPFAYAKDGISYTFSIVP 672 +G T TPDGR+ G D G A + SV KLP G+ + P Sbjct: 4870 FGAATMATPDGRKAHTPLAEGASPASGTDHLGPTAVIGSVGKLPTGSILGGVLLNQKLNP 4691 Query: 673 NALGKDDEVRKTNLAGLMDGYFHHEASIEGGQHLNVNVMNREMLLDAMENPEKYPQLTIR 732 L ++E K L L+ +F + G H+ N+++RE LLDA ++P++Y L +R Sbjct: 4690 TTL--ENESDKQKLMVLLRTFFE----VHKGWHIQYNIVSRETLLDAKKHPDQYRDLVVR 4529 Query: 733 VSGYAVRFNSLTKEQQQDVITRT 755 V+GY+ F +L+ + Q D+I RT Sbjct: 4528 VAGYSAFFTALSPDAQDDIIART 4460 >AE008892 AE006468 |AE008892| Salmonella typhimurium LT2, section 196 of 220 of the complete genome. Length = 20385 Score = 121 bits (303), Expect = 9e-28 Identities = 135/550 (24%), Positives = 226/550 (41%), Gaps = 45/550 (8%) Frame = +1 Query: 254 EAIQWTYFGYLAAVKSQNGAAMSFGRTSTFLDVYIERDLKAGKITEQEAQEMVDHLVMKL 313 +A Q ++ + N +++S GR ++ + + L G +E+++ L +K Sbjct: 7003 QACQLFWYMNIILQYESNASSLSLGRFDQYMLPFYQTSLTQGD-DPAFLKELLESLWVKC 7179 Query: 314 RMVRFLRTPEYDELFSGDPIWATESIGGMGLDGRTLVTKNSFRFLNTLYTMGPSPEPNMT 373 + LR+ F+G P T +GG+ GR+ V SF L+ Y P+PN+ Sbjct: 7180 NDIVLLRSTSSARYFAGFPTGYTALLGGLTESGRSAVNVLSFLCLDA-YQSVQLPQPNLG 7356 Query: 374 ILWSEKLPLNF-KKFAAKVSIDTSSLQYENDDLMRPDFNN--------DDYAIACCVSPM 424 + + + F K A + + T Q ND+++ P F N DYA+ CV Sbjct: 7357 VRTNALIDTPFLLKTAETIRLGTGIPQIFNDEVVVPAFLNRGVSLEDARDYAVVGCVELS 7536 Query: 425 IVGKQMQFFG-ARANLAKTM---LYAINGGVDEKLKMQVGPKSEPIKGDVLNYDEVMERM 480 I G+ A NL K M LY G D L Y+ ++ + Sbjct: 7537 IPGRTYGLHDIAMFNLLKVMEISLYENEG------------------NDTLTYEALLAHI 7662 Query: 481 DHFMDWLAKQYITALNIIHYMHDKYSYEASLMAL------HDRDV----IRTMACGIAGL 530 + + NI H ++ L + RD+ R G+ G+ Sbjct: 7663 RAKISHYITLMVEGSNICDIGHRDWAPVPLLSSFISDCLEKGRDITDGGARYNFSGVQGI 7842 Query: 531 SVA--ADSLSAIKYAKVKPIRDEDGLAIDFEI----------EGE---------YPQFGN 569 +A +DSL A+ + D+ L+ D + EGE + ++GN Sbjct: 7843 GIANLSDSLHALNGL----VFDQQRLSFDALLSILKNNFATPEGEKIRARLINRFEKYGN 8010 Query: 570 NDPRVDDLAVDLVERFMKKIQKLHTYRDAIPTQSVLTITSNVVYGKKTGNTPDGR-RXXX 628 + VD+++ +L+ + K+++K R T T++++V G G TPDGR Sbjct: 8011 DIDNVDNISAELLRYYCKEVEKYQNPRGGQFTPGSYTVSAHVPLGAVVGATPDGRFAGEQ 8190 Query: 629 XXXXXXXXMHGRDQKGAVASLTSVAKLPFAYAKDGISYTFSIVPNALGKDDEVRKTNLAG 688 M G+D +G A L SV+KL +G P L + +RK LA Sbjct: 8191 LADGGLSPMLGQDMQGPTAVLKSVSKLDNTLLSNGTLLNVKFTPATLEGEAGLRK--LAD 8364 Query: 689 LMDGYFHHEASIEGGQHLNVNVMNREMLLDAMENPEKYPQLTIRVSGYAVRFNSLTKEQQ 748 + + + QH+ NV+N + L +A P+ + L +RV+GY+ F L+KE Q Sbjct: 8365 FLRAFTQLKL-----QHIQFNVVNADTLREAQLRPQDFAGLVVRVAGYSAFFVELSKEIQ 8529 Query: 749 QDVITRTFTQ 758 D+I RT Q Sbjct: 8530 DDIIRRTAHQ 8559 >embl|AE006042|AE006042 Pasteurella multocida subsp. multocida str. Pm70 section 9 of 204 of the complete genome. Length = 12736 Score = 106 bits (265), Expect = 2e-23 Identities = 51/61 (83%), Positives = 56/61 (91%) Frame = -3 Query: 700 IEGGQHLNVNVMNREMLLDAMENPEKYPQLTIRVSGYAVRFNSLTKEQQQDVITRTFTQS 759 +EGGQHLNVNV+ RE L DA+ NPEKYPQLTIRVSGYAVRFNSLT EQQ+DVITRTFTQS Sbjct: 4970 VEGGQHLNVNVLRRETLEDAVNNPEKYPQLTIRVSGYAVRFNSLTPEQQRDVITRTFTQS 4791 Query: 760 M 760 + Sbjct: 4790 L 4788 >AE008820 AE006468 |AE008820| Salmonella typhimurium LT2, section 124 of 220 of the complete genome. Length = 21722 Score = 103 bits (257), Expect = 2e-22 Identities = 49/64 (76%), Positives = 57/64 (89%) Frame = -2 Query: 697 EASIEGGQHLNVNVMNREMLLDAMENPEKYPQLTIRVSGYAVRFNSLTKEQQQDVITRTF 756 E +EGGQHLNVNV+ RE L DA+++PEKYPQLTIRVSGYAVRFNSLT EQQ+DVI RTF Sbjct: 5905 EVRVEGGQHLNVNVLRRETLEDAVKHPEKYPQLTIRVSGYAVRFNSLTPEQQRDVIARTF 5726 Query: 757 TQSM 760 T+S+ Sbjct: 5725 TESL 5714 >AE008893 AE006468 |AE008893| Salmonella typhimurium LT2, section 197 of 220 of the complete genome. Length = 20178 Score = 29.6 bits (65), Expect = 3.5 Identities = 18/61 (29%), Positives = 26/61 (42%) Frame = +2 Query: 510 SLMALHDRDVIRTMACGIAGLSVAADSLSAIKYAKVKPIRDEDGLAIDFEIEGEYPQFGN 569 ++ LH R RTM G+ GL+ A L + Y+ V + EYP G+ Sbjct: 3494 TVYCLHQRYQNRTMPVGLPGLAAACFILGVLLYSTV--------------VRAEYPDIGS 3631 Query: 570 N 570 N Sbjct: 3632 N 3634 >AE012298 AE008922 |AE012298| Xanthomonas campestris pv. campestris str. ATCC 33913, section 206 of 460 of the complete genome. Length = 12693 Score = 29.3 bits (64), Expect = 4.5 Identities = 19/74 (25%), Positives = 34/74 (45%) Frame = -3 Query: 506 SYEASLMALHDRDVIRTMACGIAGLSVAADSLSAIKYAKVKPIRDEDGLAIDFEIEGEYP 565 S S+ L I + + AGL+++ + I+ V DG+++ EG Sbjct: 4954 SMALSIQQLSSGKRITSASVDAAGLAISERFTTQIRGLDVASRNANDGISLAQTAEGAMV 4775 Query: 566 QFGNNDPRVDDLAV 579 + GNN R+ +L+V Sbjct: 4774 EIGNNLQRIRELSV 4733 Database: 3gen Posted date: Sep 25, 2007 8:00 PM Number of letters in database: 12,243,887 Number of sequences in database: 884 Lambda K H 0.318 0.134 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 884 Number of Hits to DB: 8,687,401 Number of extensions: 109036 Number of successful extensions: 520 Number of sequences better than 10.0: 9 Number of HSP's gapped: 516 Number of HSP's successfully gapped: 9 Length of query: 760 Length of database: 4,081,295 Length adjustment: 101 Effective length of query: 659 Effective length of database: 3,992,011 Effective search space: 2630735249 Effective search space used: 2630735249 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 49 (23.5 bits)