######################################## # Program: needle # Rundate: Mon 27 Oct 2008 06:15:57 # Commandline: needle # -asequence pflb_ecoli.fasta # -bsequence nucl.fasta # -gapopen 20.0 # -gapextend 2.0 # -outfile 27.needle # Align_format: srspair # Report_file: 27.needle ######################################## #======================================= # # Aligned_sequences: 2 # 1: X08035 # 2: AAWG01000079_15 # Matrix: EDNAFULL # Gap_penalty: 20.0 # Extend_penalty: 2.0 # # Length: 2373 # Identity: 1806/2373 (76.1%) # Similarity: 1806/2373 (76.1%) # Gaps: 99/2373 ( 4.2%) # Score: 7098.0 # # #======================================= X08035 0 -------------------------------------------------- 0 AAWG01000079_ 1 ttgaagagtgtactgctcccttcggggatagctggctcaacggcgaaaac 50 X08035 1 -------------------------------------atgtccgagctta 13 |||.|.|||| AAWG01000079_ 51 agtacgtgttttttctactcataaaggtaggtatgtcatggcagagc--- 97 X08035 14 atgaaaagttagccacagcctgggaaggttttaccaaaggtgactggcag 63 |.||.||.|.|||.||||||||||||.|...||||||||||||. AAWG01000079_ 98 ------aatttgctaaagcttgggaaggttttgcggcaggtgactggcaa 141 X08035 64 aatgaagtaaacgtccgtgacttcattcagaaaaactacactccgtacga 113 ||.|||||.|||||.|||||.||.|||||.||.||||||||.|||||||| AAWG01000079_ 142 aacgaagttaacgttcgtgattttattcaaaagaactacacaccgtacga 191 X08035 114 gggtgacgagtccttcctgg---ctggcgctactgaagcgaccaccaccc 160 .||.|||||.||.|||||.| |.|..|.||||||||||||||.||..| AAWG01000079_ 192 aggcgacgaatctttcctagtctcagaaggtactgaagcgaccaacaagc 241 X08035 161 tgtgggacaaagtaatggaaggcgttaaactggaaaaccgcactcacgcg 210 |.||||..||||||||||||||..|.|.||.||||||....||||||||. AAWG01000079_ 242 tttgggctaaagtaatggaaggtatcagacaggaaaattcaactcacgct 291 X08035 211 ccagttgactttgacaccgctgttgcttccaccatcacctctcacgacgc 260 ||.||||||||.|||||..||.||...||.||||||||..|||||||||| AAWG01000079_ 292 cctgttgacttcgacacttctcttatctctaccatcacagctcacgacgc 341 X08035 261 tggctacatcaacaagcagcttgagaaaatcgttggtctgcagactgaag 310 |||||||||||||||..|.|||||.||.|||||||||||.||.||.||.| AAWG01000079_ 342 tggctacatcaacaaagatcttgaaaagatcgttggtctacaaaccgatg 391 X08035 311 ctccgctgaaacgtgctcttatcccgttcggtggtatcaaaatgatcgaa 360 ||||.|||||||||||..|.|||||...||||||||||...|||.|.||| AAWG01000079_ 392 ctccactgaaacgtgcaatcatccctaacggtggtatccgtatggtagaa 441 X08035 361 ggttcctgcaaagcgtacaaccgcgaactggatccgatgatcaaaaaaat 410 |||||.||||||||.||....||.|||||||||||.....|...|||||| AAWG01000079_ 442 ggttcatgcaaagcatatggtcgtgaactggatccacaagtttcaaaaat 491 X08035 411 cttcactgaataccgtaaaactcacaaccagggcgtgttcgacgtttaca 460 ||.|.||||||||||.|||||.||||||...||.||.||||||.|.|||| AAWG01000079_ 492 ctactctgaataccgcaaaacgcacaacgcaggtgtattcgacatctaca 541 X08035 461 ctccggacatcctgcgttgccgtaaatctggtgttctgaccggtctgcca 510 ||||.||.||.|||..|||.|||||||||||.||||||||.|||||.||| AAWG01000079_ 542 ctccagaaattctggcttgtcgtaaatctggcgttctgactggtcttcca 591 X08035 511 gatgcatatggccgtggccgtatcatcggtgactaccgtcgcgttgcgct 560 |||||.||.||||||||.|||||||||||||||||||||||.||.||.|| AAWG01000079_ 592 gatgcttacggccgtggtcgtatcatcggtgactaccgtcgtgtagctct 641 X08035 561 gtacggtatcgactacctgatgaaagacaaactggcacagttcacttctc 610 ||||||||||||||.|||||||||||||||||||||.|||||||..|||| AAWG01000079_ 642 gtacggtatcgacttcctgatgaaagacaaactggctcagttcaagtctc 691 X08035 611 tgcaggctgatctggaaaacggcgtaaacctggaacagactatccgtctg 660 ||||||...|..|.||||||||||.|.|.|||.||..|||.||.|..||| AAWG01000079_ 692 tgcaggaaaaatttgaaaacggcgaagatctgcaaatgaccatgcaactg 741 X08035 661 cgcgaagaaatcgctgaacagcaccgcgctctgggtcagatgaaagaaat 710 ||.||||||||.||.|||||.|||||.||.||.||.||.||||||.|.|| AAWG01000079_ 742 cgtgaagaaattgcagaacaacaccgtgcgcttggccaaatgaaacagat 791 X08035 711 ggctgcgaaatacggctacgacatctctggtccggctaccaacgctcagg 760 |||||||||||||||.|||||.||.|||.|.||.|||...|..||.||.| AAWG01000079_ 792 ggctgcgaaatacggttacgatatttctcgcccagctgaaacggcacaag 841 X08035 761 aagctatccagtggacttacttcggctacctggctgctgttaagtctcag 810 ||||.|||||.||||||||||||||||||||.||.||.||.||.|||||. AAWG01000079_ 842 aagcaatccaatggacttacttcggctacctagcggcagtgaaatctcaa 891 X08035 811 aacggtgctgcaatgtccttcggtcgtacctccaccttcctggatgtgta 860 |||||||||||||||||..|.||.||||||||.||.|||.||||.||||| AAWG01000079_ 892 aacggtgctgcaatgtctcttggccgtacctctactttcttggacgtgta 941 X08035 861 catcgaacgtgacctgaaagctggcaagatcaccgaacaagaagcgcagg 910 |||.||.||.|||.|||||||.|||||||||||.|||...||||||||.| AAWG01000079_ 942 cattgagcgcgacatgaaagccggcaagatcacggaagttgaagcgcaag 991 X08035 911 aaatggttgaccacctggtcatgaaactgcgtatggttcgcttcctgcgt 960 |||||.|.||||||.|.||||||||.||||||||||||||.|||||.||| AAWG01000079_ 992 aaatgatcgaccacttcgtcatgaagctgcgtatggttcgtttcctacgt 1041 X08035 961 actccggaatacgatgaactgttctctggcgacccgatctgggcaaccga 1010 |||||.||.||||||||.|||||||||||.|||||.||.||||||||||| AAWG01000079_ 1042 actcctgagtacgatgagctgttctctggtgacccaatttgggcaaccga 1091 X08035 1011 atctatcggtggtatgggcctcgacggtcgtaccctggttaccaaaaaca 1060 ||||||.|||||||||||.||.|||||||||||.|||||.||....|..| AAWG01000079_ 1092 atctatgggtggtatgggtctggacggtcgtacgctggtaacacgtacta 1141 X08035 1061 gcttccgtttcctgaacaccctgtacaccatgggtccgtctccggaaccg 1110 .||||||.||||||||..|.|||||||||||||||||.|||||.||.||. AAWG01000079_ 1142 acttccgcttcctgaattcactgtacaccatgggtccatctccagagcca 1191 X08035 1111 aacatgaccattctgtggtctgaaaaactgccgctgaacttcaagaaatt 1160 |||||.||..|.||||||||.||..|||||||......|||||||||.|| AAWG01000079_ 1192 aacatcactgtcctgtggtcagagcaactgcctgaaggcttcaagaagtt 1241 X08035 1161 cgccgctaaagtgtccatcgacacctcttctctgcagtatgagaacgatg 1210 |...||.||||||||.|||||.|||||.|||.|.|||||.||.||||||| AAWG01000079_ 1242 ctgtgcgaaagtgtctatcgatacctcgtctatccagtacgaaaacgatg 1291 X08035 1211 acctgatgcgtccggacttcaacaacgatgactacgctattgcttgctgc 1260 ||.||||||||||.|||||||||||.||||||||||||||.||.||.||. AAWG01000079_ 1292 acttgatgcgtcctgacttcaacaatgatgactacgctatcgcatgttgt 1341 X08035 1261 gtaagcccgatgatcgttggtaaacaaatgcagttcttcggtgcgcgtgc 1310 |||...||.|||.|..||||||||||.|||||||||||||||||.||.|| AAWG01000079_ 1342 gtatcaccaatggttattggtaaacacatgcagttcttcggtgctcgcgc 1391 X08035 1311 aaacctggcgaaaaccatgctgtacgcaatcaacggcggcgttgacgaaa 1360 .|||||.||.|||||..|||||||.|.|||||||||.||.||.||.||.| AAWG01000079_ 1392 taaccttgctaaaacgctgctgtatgtaatcaacggtggtgtggatgaga 1441 X08035 1361 aactgaaaatgcaggttggtccgaagtctgaaccgatcaaaggcgatgtc 1410 ||||||||||.||.||.|||||.||.........|||||..|.|||.||. AAWG01000079_ 1442 aactgaaaatccaagtgggtccaaaaatgcctaagatcaccgacgaagtg 1491 X08035 1411 ctgaactatgatgaagtgatggagcgcatggatcacttcatggactggct 1460 ||..|||..||.||.||...||......|||||||||||||||..||||| AAWG01000079_ 1492 ctcgacttcgacgatgtatggggcaagctggatcacttcatgggttggct 1541 X08035 1461 ggctaaacagtacatcactgcactgaacatcatccactacatgcacgaca 1510 |||.|.|||.|||.|||||||||||||...|||||||||||||||.|||| AAWG01000079_ 1542 ggcaacacaatacgtcactgcactgaatgccatccactacatgcatgaca 1591 X08035 1511 agtacagctacgaagcctctctgatggcgctgcacgaccgtgacgttatc 1560 ||||||||||||||||..||||.|||||||||||.||||||||.||.... AAWG01000079_ 1592 agtacagctacgaagcggctctaatggcgctgcatgaccgtgatgtacgt 1641 X08035 1561 cgcaccatggcgtgtggtatcgctggtctgtccgttgctgctgactccct 1610 ||.||.|||||||||||||||||.||||||||.||.||.||||||||.|| AAWG01000079_ 1642 cgtactatggcgtgtggtatcgcaggtctgtctgtagcggctgactcact 1691 X08035 1611 gtctgcaatcaaatatgcgaaagttaaaccgattcgtgacgaagacggtc 1660 ||||||.|||||.||.||||||||.|||||.||||||||||||||.|||. AAWG01000079_ 1692 gtctgctatcaagtacgcgaaagtaaaaccaattcgtgacgaagatggtg 1741 X08035 1661 tggctatcgacttcgaaatcgaaggcgaatacccgcagtttggtaacaat 1710 |.||||||||.||.||||||||||||||.||.||..|.||.||||||||. AAWG01000079_ 1742 tagctatcgattttgaaatcgaaggcgactatccaaaattcggtaacaac 1791 X08035 1711 gatccgcgtgtagatgacctggctgttgacctggtagaacgtttcatgaa 1760 |||.|.||.||.||||||.|.||...|||.|||||.||.||||||||||| AAWG01000079_ 1792 gattcacgcgttgatgacatcgcctgtgaactggttgagcgtttcatgaa 1841 X08035 1761 gaaaattcagaaactgcacacctaccgtgacgctatcccgactcagtctg 1810 .|||||||....||||.|.||.||||||.||||..|.||.|||||||||. AAWG01000079_ 1842 caaaattcgttcactgaaaacttaccgtaacgcagtaccaactcagtcta 1891 X08035 1811 ttctgaccatcacttctaacgttgtgtatggtaagaaaacgggtaacacc 1860 |.|||||.|||||.||.|||||.||.||.||||||||.||.||||||||. AAWG01000079_ 1892 tcctgactatcacgtcaaacgtggtatacggtaagaagacaggtaacaca 1941 X08035 1861 ccagacggtcgtcgtgctggcgcgccgttcggaccgggtgctaacccgat 1910 |||||||||||||||||.||.|||||.||.|.|||||||||.|||||.|| AAWG01000079_ 1942 ccagacggtcgtcgtgcaggtgcgccatttgcaccgggtgcaaacccaat 1991 X08035 1911 gcacggtcgtgaccagaaaggtgcagtagcctctctgacttccgttgcta 1960 |||||||||||||.||||||||||.|||||.|||||||||||.||.|.|| AAWG01000079_ 1992 gcacggtcgtgacgagaaaggtgcggtagcgtctctgacttcagtcggta 2041 X08035 1961 aactgccgtttgcttacgctaaagatggtatctcctacaccttctctatc 2010 |||||||.||||||.||||.|||||.||||||||.||.|||||||||||| AAWG01000079_ 2042 aactgccatttgctcacgcgaaagacggtatctcttataccttctctatc 2091 X08035 2011 gttccgaacgcactgggtaaagacgacgaagttcgtaagaccaacctggc 2060 ||.||.||.||||||||||||||.||..|....|......|.|||||.|| AAWG01000079_ 2092 gtgccaaatgcactgggtaaagatgagaactcacagcgtgcgaacctagc 2141 X08035 2061 tggtctgatggatggttacttccaccacgaagcatccatcgaaggtggtc 2110 |||..|||||||.|||||||||||||||||||||..||||||.||||||| AAWG01000079_ 2142 tggcttgatggacggttacttccaccacgaagcaggcatcgagggtggtc 2191 X08035 2111 agcacctgaacgttaacgtgatgaaccgtgaaatgctgctcgacgcgatg 2160 |.|||||||||||||||||..||||||||||.|..|||||.||.||..|. AAWG01000079_ 2192 aacacctgaacgttaacgttctgaaccgtgacactctgcttgatgcagtt 2241 X08035 2161 gaaaacccggaaaaatatccgcagctgaccatccgtgtatctggctacgc 2210 .|..|.||.|||||.||.||.||.|||||.||||||||||||||.||||| AAWG01000079_ 2242 aagcatccagaaaagtacccacaactgactatccgtgtatctggatacgc 2291 X08035 2211 agtacgtttcaactcgctgactaaagaacagcagcaggacgttattactc 2260 |||.||.||.|||||.||||||...||||||||.||.||||||||..||| AAWG01000079_ 2292 agtgcgctttaactctctgactgctgaacagcaacaagacgttatcgctc 2341 X08035 2261 gtaccttcactcaatctatgtaa 2283 ||||.||||||.||||..|.||| AAWG01000079_ 2342 gtactttcactgaatcgctataa 2364 #--------------------------------------- #---------------------------------------