TBLASTN 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= PUR3_ECOLI Phosphoribosylglycinamide formyltransferase (212 letters) Database: xc 460 sequences; 5,103,728 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AE012391 AE008922 |AE012391| Xanthomonas campestris pv. campestr... 166 3e-42 AE012127 AE008922 |AE012127| Xanthomonas campestris pv. campestr... 89 3e-19 AE012495 AE008922 |AE012495| Xanthomonas campestris pv. campestr... 48 8e-07 >AE012391 AE008922 |AE012391| Xanthomonas campestris pv. campestris str. ATCC 33913, section 299 of 460 of the complete genome. Length = 11677 Score = 166 bits (419), Expect = 3e-42 Identities = 94/205 (45%), Positives = 119/205 (58%), Gaps = 2/205 (0%) Frame = +2 Query: 1 MNIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIAS- 59 + + VL SG GSNLQAI+DA ++ V VFS++ A L++ A+ AS Sbjct: 10100 LRLAVLASGRGSNLQAILDAIAAGQLAAEVAGVFSDREQAPALQKVD----ASRRWSASP 10267 Query: 60 -AFDSREAYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGL 118 AF R A+D L I PD V+ AG+MRIL V + GR+LNIHPSLLPKY GL Sbjct: 10268 RAFADRAAFDSALGDAIAAVQPDWVICAGYMRILGEPLVRRFTGRMLNIHPSLLPKYRGL 10447 Query: 119 HTHRQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAGDSEDDITARVQTQEHAIYP 178 HTH +ALE GD EHG SVH V ELD GPVI QA VPV D+ + + ARV +EH + Sbjct: 10448 HTHARALEAGDAEHGASVHLVVPELDAGPVIAQAHVPVLPDDTAESLAARVLDREHPLLL 10627 Query: 179 LVISWFADGRLKMHENAAWLDGQRL 203 + A GR+ + +DGQ L Sbjct: 10628 ATLRLLASGRVTTPDGRVHIDGQCL 10702 >AE012127 AE008922 |AE012127| Xanthomonas campestris pv. campestris str. ATCC 33913, section 35 of 460 of the complete genome. Length = 10675 Score = 89.4 bits (220), Expect = 3e-19 Identities = 56/149 (37%), Positives = 83/149 (55%) Frame = +2 Query: 3 IVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASAFD 62 ++VL+S G L ++ + ++ + AV SN D L A GIA H L SA D Sbjct: 4406 LLVLVSKQGHCLNDLLFRMHSRQLPVDIVAVVSNHTDFAPL--AASYGIAFHHLPVSA-D 4576 Query: 63 SREAYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHR 122 +R + +L+ ++ D+VVLA +M+ILSPA AGR +NIH S LP + G + Sbjct: 4577 TRAEQETQLLALVERLQVDLVVLARYMQILSPALCRALAGRAINIHHSFLPSFKGAQPYH 4756 Query: 123 QALENGDEEHGTSVHFVTDELDGGPVILQ 151 QA G + G + H+VT++LD GP+I Q Sbjct: 4757 QAHARGVKIIGATAHYVTEDLDEGPIIEQ 4843 >AE012495 AE008922 |AE012495| Xanthomonas campestris pv. campestris str. ATCC 33913, section 403 of 460 of the complete genome. Length = 10381 Score = 48.1 bits (113), Expect = 8e-07 Identities = 26/77 (33%), Positives = 43/77 (55%) Frame = -2 Query: 80 PDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFV 139 PD++V+ + IL A ++ N+H SLLP++ G ++A+E GD E G + + Sbjct: 9147 PDLMVVVAYGLILPKAVLAAPTHGCWNVHASLLPRWRGAAPIQRAIEAGDTETGVCLMQM 8968 Query: 140 TDELDGGPVILQAKVPV 156 LD GPV+L +V + Sbjct: 8967 EAGLDTGPVLLSQRVEI 8917 Database: xc Posted date: Nov 9, 2008 11:17 PM Number of letters in database: 5,103,728 Number of sequences in database: 460 Lambda K H 0.320 0.136 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 460 Number of Hits to DB: 1,393,645 Number of extensions: 22250 Number of successful extensions: 114 Number of sequences better than 1.0e-03: 3 Number of HSP's gapped: 113 Number of HSP's successfully gapped: 3 Length of query: 212 Length of database: 1,701,242 Length adjustment: 83 Effective length of query: 129 Effective length of database: 1,663,062 Effective search space: 214534998 Effective search space used: 214534998 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 44 (21.6 bits)