TBLASTN 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= PUR3_ECOLI Phosphoribosylglycinamide formyltransferase (212 letters) Database: all 884 sequences; 12,243,887 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AE008812 AE006468 |AE008812| Salmonella typhimurium LT2, section... 379 e-106 embl|AE006035|AE006035 Pasteurella multocida subsp. multocida st... 245 6e-66 AE012391 AE008922 |AE012391| Xanthomonas campestris pv. campestr... 166 6e-42 AE012127 AE008922 |AE012127| Xanthomonas campestris pv. campestr... 89 7e-19 embl|AE006126|AE006126 Pasteurella multocida subsp. multocida st... 87 3e-18 AE008778 AE006468 |AE008778| Salmonella typhimurium LT2, section... 86 8e-18 AE012495 AE008922 |AE012495| Xanthomonas campestris pv. campestr... 48 2e-06 AE008803 AE006468 |AE008803| Salmonella typhimurium LT2, section... 46 9e-06 AE008857 AE006468 |AE008857| Salmonella typhimurium LT2, section... 42 1e-04 embl|AE006193|AE006193 Pasteurella multocida subsp. multocida st... 39 8e-04 >AE008812 AE006468 |AE008812| Salmonella typhimurium LT2, section 116 of 220 of the complete genome. Length = 23865 Score = 379 bits (973), Expect = e-106 Identities = 186/212 (87%), Positives = 196/212 (92%) Frame = +2 Query: 1 MNIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASA 60 MNIVVLISGNGSNLQAIIDAC+ KIKGT+RAVFSNKADAFGLERAR+AGI L A Sbjct: 17099 MNIVVLISGNGSNLQAIIDACEAKKIKGTLRAVFSNKADAFGLERAREAGIPAQALTADR 17278 Query: 61 FDSREAYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHT 120 FDSR+A+DRELI +ID YAPDVVVLAGFMRILSP FV+HY GRLLNIHPSLLPKYPGLHT Sbjct: 17279 FDSRDAFDRELIRKIDAYAPDVVVLAGFMRILSPMFVAHYYGRLLNIHPSLLPKYPGLHT 17458 Query: 121 HRQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAGDSEDDITARVQTQEHAIYPLV 180 HRQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFA DSEDDITARVQTQEHAIYPLV Sbjct: 17459 HRQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFANDSEDDITARVQTQEHAIYPLV 17638 Query: 181 ISWFADGRLKMHENAAWLDGQRLPPQGYAADE 212 ISWFA GRLKM +NAAWLDG+RLPPQGYA+DE Sbjct: 17639 ISWFAQGRLKMRDNAAWLDGRRLPPQGYASDE 17734 >embl|AE006035|AE006035 Pasteurella multocida subsp. multocida str. Pm70 section 2 of 204 of the complete genome. Length = 11220 Score = 245 bits (626), Expect = 6e-66 Identities = 118/210 (56%), Positives = 158/210 (75%) Frame = -1 Query: 3 IVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASAFD 62 IVVL+SG+GSNLQA+IDAC + +I G + AV SN+A+A+ LERA+ A I + + F Sbjct: 5082 IVVLVSGHGSNLQALIDACHSGQIAGKIVAVISNQAEAYALERAQSASIPSKVFLRKDFA 4903 Query: 63 SREAYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHR 122 + A D ++ H I+ D++VLAG+M+ILSPAF +AG++LNIHPSLLPKYPGL+T++ Sbjct: 4902 NNRAMDEQIGHYIESVQADLIVLAGYMKILSPAFTQRFAGKILNIHPSLLPKYPGLNTYQ 4723 Query: 123 QALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAGDSEDDITARVQTQEHAIYPLVIS 182 QAL+ G+ EHGTSVHFV +E+D G VILQAKVP+FA D +DI RV+ QE IYPLV+ Sbjct: 4722 QALDAGEREHGTSVHFVNEEVDAGAVILQAKVPIFAEDRIEDIEQRVKAQELRIYPLVVK 4543 Query: 183 WFADGRLKMHENAAWLDGQRLPPQGYAADE 212 WF + RL + A+LDG++LPPQGYA +E Sbjct: 4542 WFVEERLTLIGEHAFLDGKQLPPQGYAMEE 4453 >AE012391 AE008922 |AE012391| Xanthomonas campestris pv. campestris str. ATCC 33913, section 299 of 460 of the complete genome. Length = 11677 Score = 166 bits (419), Expect = 6e-42 Identities = 94/205 (45%), Positives = 119/205 (58%), Gaps = 2/205 (0%) Frame = +2 Query: 1 MNIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIAS- 59 + + VL SG GSNLQAI+DA ++ V VFS++ A L++ A+ AS Sbjct: 10100 LRLAVLASGRGSNLQAILDAIAAGQLAAEVAGVFSDREQAPALQKVD----ASRRWSASP 10267 Query: 60 -AFDSREAYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGL 118 AF R A+D L I PD V+ AG+MRIL V + GR+LNIHPSLLPKY GL Sbjct: 10268 RAFADRAAFDSALGDAIAAVQPDWVICAGYMRILGEPLVRRFTGRMLNIHPSLLPKYRGL 10447 Query: 119 HTHRQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAGDSEDDITARVQTQEHAIYP 178 HTH +ALE GD EHG SVH V ELD GPVI QA VPV D+ + + ARV +EH + Sbjct: 10448 HTHARALEAGDAEHGASVHLVVPELDAGPVIAQAHVPVLPDDTAESLAARVLDREHPLLL 10627 Query: 179 LVISWFADGRLKMHENAAWLDGQRL 203 + A GR+ + +DGQ L Sbjct: 10628 ATLRLLASGRVTTPDGRVHIDGQCL 10702 >AE012127 AE008922 |AE012127| Xanthomonas campestris pv. campestris str. ATCC 33913, section 35 of 460 of the complete genome. Length = 10675 Score = 89.4 bits (220), Expect = 7e-19 Identities = 56/149 (37%), Positives = 83/149 (55%) Frame = +2 Query: 3 IVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASAFD 62 ++VL+S G L ++ + ++ + AV SN D L A GIA H L SA D Sbjct: 4406 LLVLVSKQGHCLNDLLFRMHSRQLPVDIVAVVSNHTDFAPL--AASYGIAFHHLPVSA-D 4576 Query: 63 SREAYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHR 122 +R + +L+ ++ D+VVLA +M+ILSPA AGR +NIH S LP + G + Sbjct: 4577 TRAEQETQLLALVERLQVDLVVLARYMQILSPALCRALAGRAINIHHSFLPSFKGAQPYH 4756 Query: 123 QALENGDEEHGTSVHFVTDELDGGPVILQ 151 QA G + G + H+VT++LD GP+I Q Sbjct: 4757 QAHARGVKIIGATAHYVTEDLDEGPIIEQ 4843 >embl|AE006126|AE006126 Pasteurella multocida subsp. multocida str. Pm70 section 93 of 204 of the complete genome. Length = 12635 Score = 87.4 bits (215), Expect = 3e-18 Identities = 41/94 (43%), Positives = 60/94 (63%) Frame = +1 Query: 63 SREAYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHR 122 +R +D+ L +ID Y PD +VLA +MR+L+P FV Y R++NIH S LP + G + Sbjct: 1348 TRVEHDKLLADKIDEYTPDYIVLAKYMRVLNPQFVEKYPNRVINIHHSFLPAFIGAKPYH 1527 Query: 123 QALENGDEEHGTSVHFVTDELDGGPVILQAKVPV 156 QA E G + G + HF+ +ELD GP+I+Q + V Sbjct: 1528 QAYERGVKIIGATAHFINNELDQGPIIMQNVINV 1629 >AE008778 AE006468 |AE008778| Salmonella typhimurium LT2, section 82 of 220 of the complete genome. Length = 22388 Score = 85.9 bits (211), Expect = 8e-18 Identities = 39/94 (41%), Positives = 60/94 (63%) Frame = +3 Query: 63 SREAYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHR 122 +RE +D ++ ID + PD VVLA +MR+L+P FV+ + +++NIH S LP + G + Sbjct: 6123 TREEHDTKMADAIDAHQPDYVVLAKYMRVLTPGFVARFPNKIINIHHSFLPAFIGARPYH 6302 Query: 123 QALENGDEEHGTSVHFVTDELDGGPVILQAKVPV 156 QA E G + G + H+V D LD GP+I+Q + V Sbjct: 6303 QAYERGVKIIGATAHYVNDNLDEGPIIMQDVIHV 6404 >AE012495 AE008922 |AE012495| Xanthomonas campestris pv. campestris str. ATCC 33913, section 403 of 460 of the complete genome. Length = 10381 Score = 48.1 bits (113), Expect = 2e-06 Identities = 26/77 (33%), Positives = 43/77 (55%) Frame = -2 Query: 80 PDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFV 139 PD++V+ + IL A ++ N+H SLLP++ G ++A+E GD E G + + Sbjct: 9147 PDLMVVVAYGLILPKAVLAAPTHGCWNVHASLLPRWRGAAPIQRAIEAGDTETGVCLMQM 8968 Query: 140 TDELDGGPVILQAKVPV 156 LD GPV+L +V + Sbjct: 8967 EAGLDTGPVLLSQRVEI 8917 >AE008803 AE006468 |AE008803| Salmonella typhimurium LT2, section 107 of 220 of the complete genome. Length = 23630 Score = 45.8 bits (107), Expect = 9e-06 Identities = 25/94 (26%), Positives = 43/94 (45%) Frame = +3 Query: 72 IHEIDMYAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALENGDEE 131 + I APD++ + +LS + N+H SLLP Y G L NG+ E Sbjct: 5979 VDRIAELAPDIIFSFYYRNLLSEEILHLAPAGAFNLHGSLLPAYRGRAPLNWVLVNGESE 6158 Query: 132 HGTSVHFVTDELDGGPVILQAKVPVFAGDSEDDI 165 G ++H + D G ++ +V + ++DD+ Sbjct: 6159 TGVTLHRMVKRADAGEIVASQRVAI----AQDDV 6248 >AE008857 AE006468 |AE008857| Salmonella typhimurium LT2, section 161 of 220 of the complete genome. Length = 21370 Score = 42.0 bits (97), Expect = 1e-04 Identities = 26/90 (28%), Positives = 48/90 (53%) Frame = +1 Query: 76 DMYAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALENGDEEHGTS 135 D++A DV+V+ + IL A + +N+H SLLP++ G +++L GD E G + Sbjct: 7540 DLHA-DVMVVVAYGLILPKAVLDMPRLGCINVHGSLLPRWRGAAPIQRSLWAGDAETGVT 7716 Query: 136 VHFVTDELDGGPVILQAKVPVFAGDSEDDI 165 + + LD G ++ + P+ A D+ + Sbjct: 7717 IMQMDVGLDTGDMLYKLACPITAEDTSGSL 7806 >embl|AE006193|AE006193 Pasteurella multocida subsp. multocida str. Pm70 section 160 of 204 of the complete genome. Length = 10062 Score = 39.3 bits (90), Expect = 8e-04 Identities = 26/107 (24%), Positives = 54/107 (50%) Frame = +2 Query: 81 DVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFVT 140 DV+V+ + IL ++ LN+H SLLP++ G ++A+ GD++ G ++ + Sbjct: 4685 DVMVVVAYGLILPQTVLAMPRLGCLNVHGSLLPRWRGAAPIQRAIWAGDKQTGITIMQMD 4864 Query: 141 DELDGGPVILQAKVPVFAGDSEDDITARVQTQEHAIYPLVISWFADG 187 + LD G ++ + V+ ++D+ + + + I P + DG Sbjct: 4865 EGLDTGDMLYK----VYCDIAQDETSTSLYAKLMEIAPPALLHVLDG 4993 Database: all Posted date: Nov 9, 2008 11:44 PM Number of letters in database: 12,243,887 Number of sequences in database: 884 Lambda K H 0.320 0.136 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 884 Number of Hits to DB: 3,080,275 Number of extensions: 46430 Number of successful extensions: 232 Number of sequences better than 1.0e-03: 10 Number of HSP's gapped: 231 Number of HSP's successfully gapped: 10 Length of query: 212 Length of database: 4,081,295 Length adjustment: 89 Effective length of query: 123 Effective length of database: 4,002,619 Effective search space: 492322137 Effective search space used: 492322137 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 45 (21.9 bits)