BLASTP 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KPN2Jun2003_26 [2066 - 1479] (REVERSE SENSE) 
         (196 letters)

Database: ep 
           4855 sequences; 1,534,022 total letters

Searching..........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YFET_ECOLI P77245 Putative HTH-type transcriptional regulator yfeT.    55   3e-09
RPIR_ECOLI P0ACS7 HTH-type transcriptional regulator rpiR (Als o...    42   2e-05
KSF5_ECOLI Q47334 Polysialic acid capsule expression protein kpsF.     41   7e-05
KSF1_ECOLI P42502 Polysialic acid capsule expression protein kpsF.     41   7e-05
KDSD_ECOLI P45395 Arabinose 5-phosphate isomerase (EC 5.3.1.13).       41   7e-05
YFHH_ECOLI P37767 Putative HTH-type transcriptional regulator yfhH.    37   8e-04
GMHA_ECOLI P63224 Phosphoheptose isomerase (EC 5.3.1.-) (Sedohep...    37   8e-04

>YFET_ECOLI P77245 Putative HTH-type transcriptional regulator yfeT.
          Length = 285

 Score = 55.5 bits (132), Expect = 3e-09
 Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 5/115 (4%)

Query: 23  LHQAMSRIDGAALASLEQAIAEANAVFVFGAGRSLLMLKAFAMRLMHIGLKVHVVGDV-- 80
           L Q  + +D A L  + + I++A  + + G G S L+ +  + +LM IG +V    D   
Sbjct: 113 LEQTCALLDYARLQKIIEVISKAPFIQITGLGGSALVGRDLSFKLMKIGYRVACEADTHV 172

Query: 81  ---VTPALQKGDLLLLASASGETASLVNVAAKAKQLGGTVALLTIFPESTLGKLA 132
              V+ AL+KGD+ +  S SG    +V  A  A++ G TV  +T   +S L +LA
Sbjct: 173 QATVSQALKKGDVQIAISYSGSKKEIVLCAEAARKQGATVIAITSLTDSPLRRLA 227



  Database: ep
    Posted date:  Oct 3, 2006 10:20 PM
  Number of letters in database: 1,534,022
  Number of sequences in database:  4855
  
Lambda     K      H
   0.320    0.135    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 545,837
Number of Sequences: 4855
Number of extensions: 20672
Number of successful extensions: 76
Number of sequences better than 1.0e-03: 7
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 70
Number of HSP's gapped (non-prelim): 7
length of query: 196
length of database: 1,534,022
effective HSP length: 80
effective length of query: 116
effective length of database: 1,145,622
effective search space: 132892152
effective search space used: 132892152
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 84 (37.0 bits)