BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= KPN2Jun2003_9 [4627 - 6303] (559 letters) Database: ep 4855 sequences; 1,534,022 total letters Searching..........done Score E Sequences producing significant alignments: (bits) Value YABN_ECOLI P33595 Hypothetical protein yabN. 187 2e-48 YBAE_ECOLI P46890 Hypothetical protein ybaE. 152 5e-38 >YABN_ECOLI P33595 Hypothetical protein yabN. Length = 551 Score = 187 bits (474), Expect = 2e-48 Identities = 149/551 (27%), Positives = 249/551 (45%), Gaps = 35/551 (6%) Query: 18 GQTHELQMQEIAAIFGCSVRNCRIALKKMHQEKWLDWQPQRGRGKRSRLHLLTSPEKLFS 77 G++ + + E+AA+ CS R+ R L M WL W+ + GRGKRSRL L + L Sbjct: 19 GKSQDTTLNELAALLSCSRRHMRTLLNTMQDRGWLTWEAEVGRGKRSRLTFLYTGLALQQ 78 Query: 78 QNVNKLLEKQDYGNVLRFIGNDKYLLDRLSLWRFGVQDKSSETRVRIPYYRNLDPLNPLV 137 Q LLE+ +++ +G DK + ++ + G + +R+ YYR L L P Sbjct: 79 QRAEDLLEQDRIDQLVQLVG-DKATVRQMLVSHLGRSFRQGRHILRVLYYRPLRNLLPGS 137 Query: 138 PLRRTERHLLRQCLSGLTRYDAIQGRIVPDIAHYWTHNDDFTRWEFWLKSTARFADGNEL 197 LRR+E H+ RQ S LTR + G + DIAH+W W F+L+ F G EL Sbjct: 138 ALRRSETHIARQIFSSLTRINEENGELEADIAHHWQQISPL-HWRFFLRPGVHFHHGREL 196 Query: 198 DASAVQRGLLAASQSPQFAPLFSPIKAITADAPWHLVIETHHPVRRLDCLLATQPTMLFD 257 + V +A+ + PL+S I I + PW L I P R L LL P M+ Sbjct: 197 EMDDV----IASLKRINTLPLYSHIADIVSPTPWTLDIHLTQPDRWLPLLLGQVPAMILP 252 Query: 258 YQ-------HGHIRCTGAFHLQEHSDNFMVLRRNQHWHQARPGLDEITIFTWAPEHISMS 310 + H TG + + +S N + ++ + R +DE+ + W I+ Sbjct: 253 REWETLSNFASHPIGTGPYAVIRNSTNQLKIQAFDDFFGYRALIDEVNV--WVLPEIADE 310 Query: 311 FIPLLRGEEAQDDRPLNERSLEQGCCFVLLDG-DGAFADEARRRFINYLLQPVELLSQTQ 369 L + Q + E LE+GC ++L D A++ R +++Y+L P L+ + Sbjct: 311 PAGGLMLKGPQGEEKEIESRLEEGCYYLLFDSRTHRGANQQVRDWVSYVLSPTNLVYFAE 370 Query: 370 LPDEYARILSVAQGMLPHWNH-RPVDFGGITAPFNLRQPVIISTFQQPELAELAGAIRIL 428 ++Y ++ A G+LP W+H R + P L + E +AG ++ + Sbjct: 371 --EQYQQLWFPAYGLLPRWHHARTIK---SEKPAGLESLTLTFYQDHSEHRVIAGIMQQI 425 Query: 429 LERWHIRAEIRIDAFDRFNSQPLPPADIWL--SNFMLDTLSVPAFLEWLASTTLFTRLPE 486 L + +I+ +D++++ + +DIWL +NF L L F L +P Sbjct: 426 LASHQVTLKIKEIDYDQWHTGEI-ESDIWLNSANFTL-PLDFSVFAHLCEVPLLQHCIPI 483 Query: 487 SQRRNLNALLSTILNSDDEQAFATIAAFFHEITHQRYVIPLLHHWMEFATEKSFTWRDLN 546 + + + +N +A + ++ + ++PLLHHW+ ++S +N Sbjct: 484 DWQADAARWRNGEMN---------LANWCQQLVASKAMVPLLHHWLIIQGQRSMRGLRMN 534 Query: 547 TLGWPDFSQLW 557 TLGW DF W Sbjct: 535 TLGWFDFKSAW 545 >YBAE_ECOLI P46890 Hypothetical protein ybaE. Length = 566 Score = 152 bits (385), Expect = 5e-38 Identities = 138/553 (24%), Positives = 239/553 (43%), Gaps = 20/553 (3%) Query: 17 AGQTHELQMQEIAAIFGCSVRNCRIALKKMHQEKWLDWQPQRGRGKRSRLHLLTSPEKLF 76 AG+ + + E+A CS R+ R L++ + WL+WQ Q GRGKR +L L +PE L Sbjct: 18 AGKPQTVTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLR 77 Query: 77 SQNVNKLLEKQDYGNVLRFIGNDKYLLDRLSLWRFGVQDKSSETRVRIPYYRNLDPLNPL 136 + + + LE +VL L L G Q ++ +RIPYYR L+PL P Sbjct: 78 NAMMEQALETGKQQDVLELAQLAPGELRTLLQPFMGGQWQNDTPTLRIPYYRPLEPLQPG 137 Query: 137 VPLRRTERHLLRQCLSGLTRYDAIQGRIVPDIAHYWTHNDDFTRWEFWLKSTARFADGNE 196 R E+HL Q SGLTR+D R + D+AH+W + D RW+F+L+ST + +G+ Sbjct: 138 FLPGRAEQHLAGQIFSGLTRFDNNTQRPIGDLAHHWETSTDGLRWDFYLRSTLHWHNGDA 197 Query: 197 LDASAVQRGLLAASQSPQFAPLFSPIKAITADAPWHLVIETHHPVRRLDCLLATQPTMLF 256 + AS + + LL Q P LF +K I P L H P L LA+ + L Sbjct: 198 VKASHLHQRLLMLLQLPALDQLFISVKRIEVTHPQCLTFFLHRPDYWLAHRLASYCSHLA 257 Query: 257 DYQHGHIRCTGAFHLQEHSDNFMVLRRNQHWHQARPGLDEITIFTWAP---EHISMSF-- 311 Q I TG F L + + + L + ++H P L + + P + + S Sbjct: 258 HPQFPLIG-TGPFRLTQFTAELVRLESHDYYHLRHPLLKAVEYWITPPLFEKDLGTSCRH 316 Query: 312 ---IPLLRGEEAQDDRPLNERSLEQGCCFVLLDGDGAFADEARRRFINYLLQPVELLSQT 368 I + + EE Q ++ + G C++ L + R+ I+ + Q LL Sbjct: 317 PVQITIGKPEELQRVSQVSS-GISLGFCYLTLRKSPRLSLWQARKVISIIHQS-GLLQTL 374 Query: 369 QLPDEYARILSVAQGMLPHWNHRPVDFGGITAPFNLRQPVIISTFQQPELAELAGAIRIL 428 ++ + +++ + +LP W + + L + + + EL +A ++ Sbjct: 375 EVGE---NLITASHALLPGWT---IPHWQVPDEVKLPKTLTLVYHLPIELHTMAERLQAT 428 Query: 429 LERWHIRAEIRIDAFDRFNSQPLPP-ADIWLSNFMLDTLSVPAFLEWLASTTLFTRLPES 487 L I ++ L AD+ + + ++ +WL L+ + ++ Sbjct: 429 LAAEGCELTIIFHNAKNWDDTTLQAHADLMMGDRLIGEAPEYTLEQWLRCDPLWPHVFDA 488 Query: 488 QR-RNLNALLSTI-LNSDDEQAFATIAAFFHEITHQRYVIPLLHHWMEFATEKSFTWRDL 545 +L + L + + D+E F + A F ++ + PL ++ + L Sbjct: 489 PAYAHLQSTLDAVQIMPDEENRFNALKAVFSQLMTDATLTPLFNYHYRISAPPGVNGVRL 548 Query: 546 NTLGWPDFSQLWL 558 GW +F++ WL Sbjct: 549 TPRGWFEFTEAWL 561 Database: ep Posted date: Oct 3, 2006 10:20 PM Number of letters in database: 1,534,022 Number of sequences in database: 4855 Lambda K H 0.325 0.138 0.445 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,777,125 Number of Sequences: 4855 Number of extensions: 75880 Number of successful extensions: 264 Number of sequences better than 1.0e-03: 4 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 251 Number of HSP's gapped (non-prelim): 6 length of query: 559 length of database: 1,534,022 effective HSP length: 90 effective length of query: 469 effective length of database: 1,097,072 effective search space: 514526768 effective search space used: 514526768 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 90 (39.3 bits)