BLASTN 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= asparagine-tRNA1.2, Escherichia coli K12 MG1655.
         (76 letters)

Database: bs 
           1 sequences; 4,214,630 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL009126_GR|AL009126_GR Bacillus subtilis (strain 168) chromosom...    30   0.21 

>AL009126_GR|AL009126_GR Bacillus subtilis (strain 168) chromosome, complete
               sequence.
          Length = 4214630

 Score = 30.2 bits (15), Expect = 0.21
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 31      actgttaatccgtat 45
               |||||||||||||||
Sbjct: 1846971 actgttaatccgtat 1846985



 Score = 28.2 bits (14), Expect = 0.82
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 32      ctgttaatccgtat 45
               ||||||||||||||
Sbjct: 3878200 ctgttaatccgtat 3878213



 Score = 28.2 bits (14), Expect = 0.82
 Identities = 17/18 (94%)
 Strand = Plus / Minus

                                 
Query: 51      tggttcgagtccagtcag 68
               ||||||||||||| ||||
Sbjct: 3171227 tggttcgagtccattcag 3171210



 Score = 28.2 bits (14), Expect = 0.82
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 22      gaacggcggactgt 35
               ||||||||||||||
Sbjct: 2321799 gaacggcggactgt 2321786



 Score = 28.2 bits (14), Expect = 0.82
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                                
Query: 25     cggcggactgttaatccg 42
              ||||||||||| ||||||
Sbjct: 951666 cggcggactgtaaatccg 951683



 Score = 28.2 bits (14), Expect = 0.82
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                                
Query: 25     cggcggactgttaatccg 42
              ||||||||||| ||||||
Sbjct: 194472 cggcggactgtaaatccg 194489



 Score = 28.2 bits (14), Expect = 0.82
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                               
Query: 51    tggttcgagtccagtcag 68
             ||||||||||||| ||||
Sbjct: 31981 tggttcgagtccactcag 31998



 Score = 28.2 bits (14), Expect = 0.82
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                               
Query: 51    tggttcgagtccagtcag 68
             ||||||||||||| ||||
Sbjct: 11513 tggttcgagtccactcag 11530



 Score = 26.3 bits (13), Expect = 3.2
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 25      cggcggactgtta 37
               |||||||||||||
Sbjct: 4152816 cggcggactgtta 4152828



 Score = 26.3 bits (13), Expect = 3.2
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 59      gtccagtcagagg 71
               |||||||||||||
Sbjct: 3606869 gtccagtcagagg 3606857



 Score = 26.3 bits (13), Expect = 3.2
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 33      tgttaatccgtat 45
               |||||||||||||
Sbjct: 1721709 tgttaatccgtat 1721697



 Score = 26.3 bits (13), Expect = 3.2
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                           
Query: 22     gaacggcggactg 34
              |||||||||||||
Sbjct: 926638 gaacggcggactg 926650


  Database: bs
    Posted date:  Sep 30, 2006  5:03 PM
  Number of letters in database: 4,214,630
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 59
Number of Sequences: 1
Number of extensions: 59
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of query: 76
length of database: 4,214,630
effective HSP length: 14
effective length of query: 62
effective length of database: 4,214,616
effective search space: 261306192
effective search space used: 261306192
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)