# fasta34 tRNA.fasta bs_genome.fasta 6 FASTA searches a protein or DNA sequence data bank version 3.4t25 Nov 12, 2004 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 asparagine-tRNA1.2,, 76 nt vs bs_genome.fasta library 22592 residues in 1 sequences Altschul/Gish params: n0: 76 Lambda: 0.192 K: 0.177 H: 0.360 FASTA (3.47 Mar 2004) function [optimized, +5/-4 matrix (5:-4)] ktup: 6 join: 45, opt: 30, open/ext: -12/-4, width: 16 The best scores are: opt bits E(1) AL009126_GR|AL009126_GR Bacillus subtilis (str (4214630) [f] 151 45.2 4.4e-08 AL009126_GR|AL009126_GR Bacillus subtilis (str (4214630) [f] 64 21.1 0.65 AL009126_GR|AL009126_GR Bacillus subtilis (str (4214630) [r] 50 17.2 2 AL009126_GR|AL009126_GR Bacillus subtilis (str (4214630) [r] 49 16.9 2 >>AL009126_GR|AL009126_GR Bacillus subtilis (strain 168) (4214630 nt) initn: 65 init1: 65 opt: 151 Z-score: 183.0 bits: 45.2 E(): 4.4e-08 banded Smith-Waterman score: 151; 72.308% identity (72.308% similar) in 65 nt overlap (5-68:11466-11530) 10 20 30 aspara TCCTCTGTAGTTCAG-TCGGTAGAACGGCGGACT :::::: :::: : : :::: :: : :: AL0091 ACTTTGTTCCTTGAATAAGTTAAGATGGGCCTGTAGCTCAGCTGGTTAGAGCGCACGCCT 11440 11450 11460 11470 11480 11490 40 50 60 70 asara GTTAATCCGTATGTCACTGGTTCGAGTCCAGTCAGAGGAGCCA : ::: : : ::: ::::::::::::: :::: AL0091 GATAAGCGTGAGGTCGGTGGTTCGAGTCCACTCAGGCCCACCATCTTATATAACGGGGCC 11500 11510 11520 11530 11540 11550 AL0091 TTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTA 11560 11570 11580 11590 11600 11610 76 residues in 1 query sequences 22592 residues in 1 library sequences Scomplib [34t25] start: Sat Sep 30 19:10:33 2006 done: Sat Sep 30 19:11:04 2006 Total Scan time: 0.030 Total Display time: 0.000 Function used was FASTA [version 3.4t25 Nov 12, 2004]