TBLASTN 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= KPN2Jun2003_9 [4627 - 6303] (559 letters) Database: en 1 sequences; 4,639,675 total letters Searching.done Score E Sequences producing significant alignments: (bits) Value U00096 U00096.2 Escherichia coli K12 MG1655, complete genome. 187 4e-48 >U00096 U00096.2 Escherichia coli K12 MG1655, complete genome. Length = 4639675 Score = 187 bits (474), Expect = 4e-48 Identities = 149/551 (27%), Positives = 249/551 (45%), Gaps = 11/551 (1%) Frame = -1 Query: 18 GQTHELQMQEIAAIFGCSVRNCRIALKKMHQEKWLDWQPQRGRGKRSRLHLLTSPEKLFS 77 G++ + + E+AA+ CS R+ R L M WL W+ + GRGKRSRL L + L Sbjct: 77245 GKSQDTTLNELAALLSCSRRHMRTLLNTMQDRGWLTWEAEVGRGKRSRLTFLYTGLALQQ 77066 Query: 78 QNVNKLLEKQDYGNVLRFIGNDKYLLDRLSLWRFGVQDKSSETRVRIPYYRNLDPLNPLV 137 Q LLE+ +++ +G DK + ++ + G + +R+ YYR L L P Sbjct: 77065 QRAEDLLEQDRIDQLVQLVG-DKATVRQMLVSHLGRSFRQGRHILRVLYYRPLRNLLPGS 76889 Query: 138 PLRRTERHLLRQCLSGLTRYDAIQGRIVPDIAHYWTHNDDFTRWEFWLKSTARFADGNEL 197 LRR+E H+ RQ S LTR + G + DIAH+W W F+L+ F G EL Sbjct: 76888 ALRRSETHIARQIFSSLTRINEENGELEADIAHHWQQISPL-HWRFFLRPGVHFHHGREL 76712 Query: 198 DASAVQRGLLAASQSPQFAPLFSPIKAITADAPWHLVIETHHPVRRLDCLLATQPTMLFD 257 + V +A+ + PL+S I I + PW L I P R L LL P M+ Sbjct: 76711 EMDDV----IASLKRINTLPLYSHIADIVSPTPWTLDIHLTQPDRWLPLLLGQVPAMILP 76544 Query: 258 YQ-------HGHIRCTGAFHLQEHSDNFMVLRRNQHWHQARPGLDEITIFTWAPEHISMS 310 + H TG + + +S N + ++ + R +DE+ + W I+ Sbjct: 76543 REWETLSNFASHPIGTGPYAVIRNSTNQLKIQAFDDFFGYRALIDEVNV--WVLPEIADE 76370 Query: 311 FIPLLRGEEAQDDRPLNERSLEQGCCFVLLDG-DGAFADEARRRFINYLLQPVELLSQTQ 369 L + Q + E LE+GC ++L D A++ R +++Y+L P L+ + Sbjct: 76369 PAGGLMLKGPQGEEKEIESRLEEGCYYLLFDSRTHRGANQQVRDWVSYVLSPTNLVYFAE 76190 Query: 370 LPDEYARILSVAQGMLPHWNH-RPVDFGGITAPFNLRQPVIISTFQQPELAELAGAIRIL 428 ++Y ++ A G+LP W+H R + P L + E +AG ++ + Sbjct: 76189 --EQYQQLWFPAYGLLPRWHHARTIK---SEKPAGLESLTLTFYQDHSEHRVIAGIMQQI 76025 Query: 429 LERWHIRAEIRIDAFDRFNSQPLPPADIWL--SNFMLDTLSVPAFLEWLASTTLFTRLPE 486 L + +I+ +D++++ + +DIWL +NF L L F L +P Sbjct: 76024 LASHQVTLKIKEIDYDQWHTGEI-ESDIWLNSANFTL-PLDFSVFAHLCEVPLLQHCIPI 75851 Query: 487 SQRRNLNALLSTILNSDDEQAFATIAAFFHEITHQRYVIPLLHHWMEFATEKSFTWRDLN 546 + + + +N +A + ++ + ++PLLHHW+ ++S +N Sbjct: 75850 DWQADAARWRNGEMN---------LANWCQQLVASKAMVPLLHHWLIIQGQRSMRGLRMN 75698 Query: 547 TLGWPDFSQLW 557 TLGW DF W Sbjct: 75697 TLGWFDFKSAW 75665 Score = 152 bits (385), Expect = 7e-38 Identities = 138/553 (24%), Positives = 239/553 (43%), Gaps = 11/553 (1%) Frame = -2 Query: 17 AGQTHELQMQEIAAIFGCSVRNCRIALKKMHQEKWLDWQPQRGRGKRSRLHLLTSPEKLF 76 AG+ + + E+A CS R+ R L++ + WL+WQ Q GRGKR +L L +PE L Sbjct: 466485 AGKPQTVTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLR 466306 Query: 77 SQNVNKLLEKQDYGNVLRFIGNDKYLLDRLSLWRFGVQDKSSETRVRIPYYRNLDPLNPL 136 + + + LE +VL L L G Q ++ +RIPYYR L+PL P Sbjct: 466305 NAMMEQALETGKQQDVLELAQLAPGELRTLLQPFMGGQWQNDTPTLRIPYYRPLEPLQPG 466126 Query: 137 VPLRRTERHLLRQCLSGLTRYDAIQGRIVPDIAHYWTHNDDFTRWEFWLKSTARFADGNE 196 R E+HL Q SGLTR+D R + D+AH+W + D RW+F+L+ST + +G+ Sbjct: 466125 FLPGRAEQHLAGQIFSGLTRFDNNTQRPIGDLAHHWETSTDGLRWDFYLRSTLHWHNGDA 465946 Query: 197 LDASAVQRGLLAASQSPQFAPLFSPIKAITADAPWHLVIETHHPVRRLDCLLATQPTMLF 256 + AS + + LL Q P LF +K I P L H P L LA+ + L Sbjct: 465945 VKASHLHQRLLMLLQLPALDQLFISVKRIEVTHPQCLTFFLHRPDYWLAHRLASYCSHLA 465766 Query: 257 DYQHGHIRCTGAFHLQEHSDNFMVLRRNQHWHQARPGLDEITIFTWAP---EHISMSF-- 311 Q I TG F L + + + L + ++H P L + + P + + S Sbjct: 465765 HPQFPLIG-TGPFRLTQFTAELVRLESHDYYHLRHPLLKAVEYWITPPLFEKDLGTSCRH 465589 Query: 312 ---IPLLRGEEAQDDRPLNERSLEQGCCFVLLDGDGAFADEARRRFINYLLQPVELLSQT 368 I + + EE Q ++ + G C++ L + R+ I+ + Q LL Sbjct: 465588 PVQITIGKPEELQRVSQVSS-GISLGFCYLTLRKSPRLSLWQARKVISIIHQS-GLLQTL 465415 Query: 369 QLPDEYARILSVAQGMLPHWNHRPVDFGGITAPFNLRQPVIISTFQQPELAELAGAIRIL 428 ++ + +++ + +LP W + + L + + + EL +A ++ Sbjct: 465414 EVGE---NLITASHALLPGWT---IPHWQVPDEVKLPKTLTLVYHLPIELHTMAERLQAT 465253 Query: 429 LERWHIRAEIRIDAFDRFNSQPLPP-ADIWLSNFMLDTLSVPAFLEWLASTTLFTRLPES 487 L I ++ L AD+ + + ++ +WL L+ + ++ Sbjct: 465252 LAAEGCELTIIFHNAKNWDDTTLQAHADLMMGDRLIGEAPEYTLEQWLRCDPLWPHVFDA 465073 Query: 488 QR-RNLNALLSTI-LNSDDEQAFATIAAFFHEITHQRYVIPLLHHWMEFATEKSFTWRDL 545 +L + L + + D+E F + A F ++ + PL ++ + L Sbjct: 465072 PAYAHLQSTLDAVQIMPDEENRFNALKAVFSQLMTDATLTPLFNYHYRISAPPGVNGVRL 464893 Query: 546 NTLGWPDFSQLWL 558 GW +F++ WL Sbjct: 464892 TPRGWFEFTEAWL 464854 Score = 46.6 bits (109), Expect = 8e-06 Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 2/88 (2%) Frame = +2 Query: 129 NLDPLNPLVPLRRTERHLLRQCL--SGLTRYDAIQGRIVPDIAHYWTHNDDFTRWEFWLK 186 N+ PLNP + T + Q + L +Y A G ++P +A WTH++D W F L+ Sbjct: 3611792 NVGPLNPHL---YTPNQMFAQSMVYEPLVKYQA-DGSVIPWLAKSWTHSEDGKTWTFTLR 3611959 Query: 187 STARFADGNELDASAVQRGLLAASQSPQ 214 +F++G DA A A + Q Sbjct: 3611960 DDVKFSNGEPFDAEAAAENFRAVLDNRQ 3612043 Score = 40.0 bits (92), Expect = 7e-04 Identities = 27/67 (40%), Positives = 33/67 (49%), Gaps = 3/67 (4%) Frame = -1 Query: 167 DIAHYWTHNDDFTRWEFWLKSTARFADGNELDASAVQ---RGLLAASQSPQFAPLFSPIK 223 D+A W +DD W F LK A+FADG + A AV+ LL Q P A F K Sbjct: 1560265 DLASSWKASDDQKEWTFTLKDNAKFADGTPVTAEAVKLSFERLLKIGQGP--AEAFP--K 1560098 Query: 224 AITADAP 230 + DAP Sbjct: 1560097 DLKIDAP 1560077 Score = 38.1 bits (87), Expect = 0.003 Identities = 22/67 (32%), Positives = 34/67 (50%) Frame = +1 Query: 133 LNPLVPLRRTERHLLRQCLSGLTRYDAIQGRIVPDIAHYWTHNDDFTRWEFWLKSTARFA 192 L+P + E ++R GL + +G IVP +A W ND+ W F L+ A++A Sbjct: 1391392 LDPAKAVGLPEIQVIRDLFEGLVNQNE-KGEIVPGVATQWKSNDNRI-WTFTLRDNAKWA 1391565 Query: 193 DGNELDA 199 DG + A Sbjct: 1391566 DGTPVTA 1391586 Database: en Posted date: Oct 6, 2006 5:46 PM Number of letters in database: 4,639,675 Number of sequences in database: 1 Lambda K H 0.325 0.138 0.445 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,881,369 Number of Sequences: 1 Number of extensions: 69124 Number of successful extensions: 492 Number of sequences better than 1.0e-02: 1 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 153 Number of HSP's gapped (non-prelim): 424 length of query: 559 length of database: 1,546,558 effective HSP length: 92 effective length of query: 467 effective length of database: 1,546,466 effective search space: 722199622 effective search space used: 722199622 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 82 (36.2 bits)