BLASTN 2.5.1+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. RID: 39CHJ9VX016 Database: Nucleotide collection (nt) 40,032,610 sequences; 131,707,966,100 total letters Query= Length=492 Score E Sequences producing significant alignments: (Bits) Value CP015748.1 Shinella sp. HZN7 plasmid pShin-12, complete sequence 888 0.0 CP014259.1 Agrobacterium tumefaciens strain S33 chromosome ci... 636 2e-178 CP007070.1 Rhizobium leguminosarum bv. trifolii CB782 plasmid... 493 2e-135 CP000637.1 Agrobacterium vitis S4 plasmid pTiS4, complete seq... 365 5e-97 JX683454.1 Agrobacterium tumefaciens strain F64/95 plasmid pA... 351 1e-92 CP007238.1 Ensifer adhaerens OV14 plasmid pOV14c, complete se... 347 1e-91 AM236081.1 Rhizobium leguminosarum bv. viciae plasmid pRL7 co... 324 2e-84 EF066650.1 Sinorhizobium meliloti strain SM11 plasmid pSmeSM1... 221 1e-53 CP016292.1 Rhizobium leguminosarum strain Vaf10 plasmid unnam... 206 3e-49 KM233683.1 Rhizobium leguminosarum bv. viciae plasmid pRleVF3... 206 3e-49 ALIGNMENTS >CP015748.1 Shinella sp. HZN7 plasmid pShin-12, complete sequence Length=71917 Score = 888 bits (984), Expect = 0.0 Identities = 492/492 (100%), Gaps = 0/492 (0%) Strand=Plus/Plus Query 1 TTAGTCTCCGTTGGTTTCGTTTTGCGACCCCTTGTACTCCTCGTACAAGCGATCCATGCG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 70911 TTAGTCTCCGTTGGTTTCGTTTTGCGACCCCTTGTACTCCTCGTACAAGCGATCCATGCG 70970 Query 61 AGAAGACAGCCATTCGCTGAAAGGCTTGGCTTCTACATTCGTGAGCTCGATGGCAACCTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 70971 AGAAGACAGCCATTCGCTGAAAGGCTTGGCTTCTACATTCGTGAGCTCGATGGCAACCTT 71030 Query 121 CTTCGCTTTGGCGGTCATCGCGAAATTCAGCGAGCGATCAGACGAGATCCAGTCTTTTGC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 71031 CTTCGCTTTGGCGGTCATCGCGAAATTCAGCGAGCGATCAGACGAGATCCAGTCTTTTGC 71090 Query 181 TGCGGTATCGGCTTTGGGCATTTTTGCAGCCGATTTGGCCTTGTATCGCTTCACGTAGTC 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 71091 TGCGGTATCGGCTTTGGGCATTTTTGCAGCCGATTTGGCCTTGTATCGCTTCACGTAGTC 71150 Query 241 ATGAAGTTCATCAAACCGCTCGGCTTCAGGAAGCCTTTGAAAGTCGGCCGAAGCTGCGTG 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 71151 ATGAAGTTCATCAAACCGCTCGGCTTCAGGAAGCCTTTGAAAGTCGGCCGAAGCTGCGTG 71210 Query 301 CTCAACAGCGACCTTGGAGAGGGCAGGGGCGAGTAGCAACTGCCGGAGGCTGAGCCAACG 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 71211 CTCAACAGCGACCTTGGAGAGGGCAGGGGCGAGTAGCAACTGCCGGAGGCTGAGCCAACG 71270 Query 361 GTCGCGCCCAATTTTCTTCGATGCACCCAAGGCCTGAATGACTGGCGCTGGCACCGCCTC 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 71271 GTCGCGCCCAATTTTCTTCGATGCACCCAAGGCCTGAATGACTGGCGCTGGCACCGCCTC 71330 Query 421 GACGACAGCAAGCATCTTCGACAGCATCGCCTCATCGATGGCGAGCGACGAACGAACCGT 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 71331 GACGACAGCAAGCATCTTCGACAGCATCGCCTCATCGATGGCGAGCGACGAACGAACCGT 71390 Query 481 TTCCTTGTTCAT 492 |||||||||||| Sbjct 71391 TTCCTTGTTCAT 71402 >CP014259.1 Agrobacterium tumefaciens strain S33 chromosome circular, complete sequence Length=2497934 Score = 636 bits (704), Expect = 2e-178 Identities = 436/492 (89%), Gaps = 0/492 (0%) Strand=Plus/Minus Query 1 TTAGTCTCCGTTGGTTTCGTTTTGCGACCCCTTGTACTCCTCGTACAAGCGATCCATGCG 60 ||||||||||||||||||||| | | | ||||||||||||||||||||||| |||||||| Sbjct 190746 TTAGTCTCCGTTGGTTTCGTTCTTCAAGCCCTTGTACTCCTCGTACAAGCGGTCCATGCG 190687 Query 61 AGAAGACAGCCATTCGCTGAAAGGCTTGGCTTCTACATTCGTGAGCTCGATGGCAACCTT 120 |||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||| Sbjct 190686 CGAAGACAGCCATTCGCTGAAGGGCTTGGCTTCGACACTCGTGAGCTCGATGGCAACCTT 190627 Query 121 CTTCGCTTTGGCGGTCATCGCGAAATTCAGCGAGCGATCAGACGAGATCCAGTCTTTTGC 180 ||| |||||||||||||||||| |||||| |||| || ||||| | |||| | ||||| Sbjct 190626 CTTTCCTTTGGCGGTCATCGCGAGATTCAGAGAGCCGTCCGACGATACCCAGCCCTTTGC 190567 Query 181 TGCGGTATCGGCTTTGGGCATTTTTGCAGCCGATTTGGCCTTGTATCGCTTCACGTAGTC 240 ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| Sbjct 190566 TGCGGTATCGGCTTTGGGCTTTTTTGCAGCCGATTTGGCCTTGTATCGCTTCAGATAGTC 190507 Query 241 ATGAAGTTCATCAAACCGCTCGGCTTCAGGAAGCCTTTGAAAGTCGGCCGAAGCTGCGTG 300 || ||| |||| ||||||||||| || | ||| | |||||||||||||| || || || Sbjct 190506 GTGGAGTGCATCGAACCGCTCGGCCTCGGCGAGCTTGTGAAAGTCGGCCGACGCGGCATG 190447 Query 301 CTCAACAGCGACCTTGGAGAGGGCAGGGGCGAGTAGCAACTGCCGGAGGCTGAGCCAACG 360 |||| |||||||||| |||||||||||||| |||| || |||||||||||||||||| || Sbjct 190446 CTCAGCAGCGACCTTCGAGAGGGCAGGGGCCAGTATCAGCTGCCGGAGGCTGAGCCATCG 190387 Query 361 GTCGCGCCCAATTTTCTTCGATGCACCCAAGGCCTGAATGACTGGCGCTGGCACCGCCTC 420 ||| || |||||||||||||||||||| | ||||||||| || | |||||||||||| || Sbjct 190386 GTCACGGCCAATTTTCTTCGATGCACCTAGGGCCTGAATAACGGACGCTGGCACCGCTTC 190327 Query 421 GACGACAGCAAGCATCTTCGACAGCATCGCCTCATCGATGGCGAGCGACGAACGAACCGT 480 |||||| || ||||||||||||||||||||||| |||||||||||||| || |||||||| Sbjct 190326 GACGACTGCGAGCATCTTCGACAGCATCGCCTCGTCGATGGCGAGCGATGACCGAACCGT 190267 Query 481 TTCCTTGTTCAT 492 ||||||| |||| Sbjct 190266 TTCCTTGGTCAT 190255 >CP007070.1 Rhizobium leguminosarum bv. trifolii CB782 plasmid, complete sequence Length=251612 Score = 493 bits (546), Expect = 2e-135 Identities = 402/488 (82%), Gaps = 0/488 (0%) Strand=Plus/Plus Query 5 TCTCCGTTGGTTTCGTTTTGCGACCCCTTGTACTCCTCGTACAAGCGATCCATGCGAGAA 64 ||||| |||||||||||| ||| ||||||||||| ||||||||||||||||||||||| Sbjct 12689 TCTCCACTGGTTTCGTTTTTCGATCCCTTGTACTCGTCGTACAAGCGATCCATGCGAGAC 12748 Query 65 GACAGCCATTCGCTGAAAGGCTTGGCTTCTACATTCGTGAGCTCGATGGCAACCTTCTTC 124 ||||||||||||||||| ||| ||||||| ||||||| |||||||| |||||||| ||| Sbjct 12749 GACAGCCATTCGCTGAACGGCCTGGCTTCAACATTCGAAAGCTCGATAGCAACCTTTTTC 12808 Query 125 GCTTTGGCGGTCATCGCGAAATTCAGCGAGCGATCAGACGAGATCCAGTCTTTTGCTGCG 184 ||| | |||||||| |||| | ||||||||||| ||||| |||| || | | ||| Sbjct 12809 GCTCTCGCGGTCATTGCGAGGCTGAGCGAGCGATCGGACGAAGTCCAATCCCTCGGCGCG 12868 Query 185 GTATCGGCTTTGGGCATTTTTGCAGCCGATTTGGCCTTGTATCGCTTCACGTAGTCATGA 244 | ||| ||||| ||| | || ||||| || || |||||||||||| ||| || ||||| Sbjct 12869 GCATCTGCTTTTGGCTTCTTCGCAGCTGACTTTGCCTTGTATCGCCTCAGATAATCATGG 12928 Query 245 AGTTCATCAAACCGCTCGGCTTCAGGAAGCCTTTGAAAGTCGGCCGAAGCTGCGTGCTCA 304 || ||||| || || ||||||||||||||| |||||||| | | | || ||||| Sbjct 12929 AGCTCATCGAATCGGTCGGCTTCAGGAAGCTGCTGAAAGTCCTCGGTTTCCGCATGCTCC 12988 Query 305 ACAGCGACCTTGGAGAGGGCAGGGGCGAGTAGCAACTGCCGGAGGCTGAGCCAACGGTCG 364 |||| ||||||| |||||||||||||| | || ||| ||||| |||||||| | |||| Sbjct 12989 GCAGCAGCCTTGGACAGGGCAGGGGCGAGAACCAGCTGGCGGAGACTGAGCCACCTGTCG 13048 Query 365 CGCCCAATTTTCTTCGATGCACCCAAGGCCTGAATGACTGGCGCTGGCACCGCCTCGACG 424 ||||| || ||||| || || || | ||| || ||||||||||| || |||||||||||| Sbjct 13049 CGCCCGATCTTCTTGGACGCCCCGAGGGCTTGGATGACTGGCGCCGGGACCGCCTCGACG 13108 Query 425 ACAGCAAGCATCTTCGACAGCATCGCCTCATCGATGGCGAGCGACGAACGAACCGTTTCC 484 || ||||||||||| || |||||||||||||||| ||||||||| ||||||||||||||| Sbjct 13109 ACTGCAAGCATCTTGGAGAGCATCGCCTCATCGACGGCGAGCGAGGAACGAACCGTTTCC 13168 Query 485 TTGTTCAT 492 |||||||| Sbjct 13169 TTGTTCAT 13176 >CP000637.1 Agrobacterium vitis S4 plasmid pTiS4, complete sequence Length=258824 Score = 365 bits (404), Expect = 5e-97 Identities = 376/492 (76%), Gaps = 0/492 (0%) Strand=Plus/Minus Query 1 TTAGTCTCCGTTGGTTTCGTTTTGCGACCCCTTGTACTCCTCGTACAAGCGATCCATGCG 60 ||||||||||||| |||| | | ||| || ||||||| |||||||| ||||||||| | Sbjct 2331 TTAGTCTCCGTTGTTTTCCTGCTTCGATCCTCTGTACTCGTCGTACAAACGATCCATGTG 2272 Query 61 AGAAGACAGCCATTCGCTGAAAGGCTTGGCTTCTACATTCGTGAGCTCGATGGCAACCTT 120 | || ||||| |||||||| ||||| ||||| ||||||| |||||||| |||||||| Sbjct 2271 GGCTGATAGCCACTCGCTGAAGGGCTTCGCTTCGACATTCGAAAGCTCGATCGCAACCTT 2212 Query 121 CTTCGCTTTGGCGGTCATCGCGAAATTCAGCGAGCGATCAGACGAGATCCAGTCTTTTGC 180 |||| |||||| ||||| |||||||||| || ||| ||| |||| || | | Sbjct 2211 TTTCGATTTGGCATTCATCACGAAATTCAGTGACGTATCGCTCGAAGTCCAATCCCTCCC 2152 Query 181 TGCGGTATCGGCTTTGGGCATTTTTGCAGCCGATTTGGCCTTGTATCGCTTCACGTAGTC 240 | | | |||| |||||| | ||||||||||||||||||||||| ||||||| |||||| Sbjct 2151 GGACGCACCGGCCTTGGGCTTCTTTGCAGCCGATTTGGCCTTGTAGCGCTTCAGGTAGTC 2092 Query 241 ATGAAGTTCATCAAACCGCTCGGCTTCAGGAAGCCTTTGAAAGTCGGCCGAAGCTGCGTG 300 ||| || ||||| ||||||| | |||||| ||| ||| | |||| | | || Sbjct 2091 ATGGAGCTCATCGAACCGCTTGTCTTCAGTCAGCTCAACGAAGCCTGCCGTTTCGACATG 2032 Query 301 CTCAACAGCGACCTTGGAGAGGGCAGGGGCGAGTAGCAACTGCCGGAGGCTGAGCCAACG 360 ||| || ||||| ||||||||| || || ||||| || |||||||| ||||| || Sbjct 2031 CTCCGTCGCAACCTTCAGGAGGGCAGGAGCAAGAAGCAATTGACGGAGGCTAAGCCACCG 1972 Query 361 GTCGCGCCCAATTTTCTTCGATGCACCCAAGGCCTGAATGACTGGCGCTGGCACCGCCTC 420 |||||||||||| ||||| || || || | ||| || || | ||||| || ||||| Sbjct 1971 GTCGCGCCCAATCTTCTTGGAGGCCCCGAGCACCTTAAGGATCGAAGCTGGGACGGCCTC 1912 Query 421 GACGACAGCAAGCATCTTCGACAGCATCGCCTCATCGATGGCGAGCGACGAACGAACCGT 480 |||||| ||||| ||||| ||||||||||||||||| ||||||||||| |||||| Sbjct 1911 CACGACACTGAGCATTTTCGAAAGCATCGCCTCATCGATCGCGAGCGACGACCGAACCAC 1852 Query 481 TTCCTTGTTCAT 492 ||||| |||| Sbjct 1851 GTCCTTCGTCAT 1840 >JX683454.1 Agrobacterium tumefaciens strain F64/95 plasmid pAoF64/95, complete sequence Length=176574 Score = 351 bits (388), Expect = 1e-92 Identities = 374/492 (76%), Gaps = 4/492 (1%) Strand=Plus/Minus Query 3 AGTCTCCGTTGGTTTCGTTTTGCGACCCCTTGTACTCCTCGTACAAGCGATCCATGCGAG 62 ||||||||||| |||| | | ||| || ||||||| |||||||| |||||||| | | Sbjct 2263 AGTCTCCGTTGTTTTCCTGCTTCGATCCTCTGTACTCGTCGTACAAACGATCCATATGGG 2204 Query 63 AAGACAGCCATTCGCTGAAAGGCTTGGCTTCTACATTCGTGAGCTCGATGGCAACCTTCT 122 |||||||| ||||||| ||||| || || ||||||| |||||||| |||||||||| Sbjct 2203 TCGACAGCCACACGCTGAAGGGCTTCGCCTCGACATTCGAAAGCTCGATCGCAACCTTCT 2144 Query 123 TCGCTTTGGCGGTCATCGCGAAATTCAGCGAGCGATCAGACGAGA--TCCAGTCTTTTGC 180 ||| |||||| |||| ||||||||| || | || ||||| |||| || || | Sbjct 2143 TCGATTTGGCATTCATTACGAAATTCAATGAACTGTCG--CGAGACGTCCAATCCTTCCC 2086 Query 181 TGCGGTATCGGCTTTGGGCATTTTTGCAGCCGATTTGGCCTTGTATCGCTTCACGTAGTC 240 | | ||| |||||| | || |||||||||||| |||||| ||| ||| |||||| Sbjct 2085 GGACGCGCTGGCCTTGGGCTTCTTCGCAGCCGATTTGATCTTGTAGCGCCTCAGGTAGTC 2026 Query 241 ATGAAGTTCATCAAACCGCTCGGCTTCAGGAAGCCTTTGAAAGTCGGCCGAAGCTGCGTG 300 |||||| ||||| ||||||| | |||||| | || || ||||| | | | || Sbjct 2025 ATGAAGCTCATCGAACCGCTTGTCTTCAGCCAACCCAACGAACTCGGCAGTTCCCACATG 1966 Query 301 CTCAACAGCGACCTTGGAGAGGGCAGGGGCGAGTAGCAACTGCCGGAGGCTGAGCCAACG 360 ||| |||||||| ||||||||||||| || ||||| ||||| ||||| ||||| Sbjct 1965 CTCTGTGGCGACCTTCAAGAGGGCAGGGGCAAGAAGCAATTGCCGAAGGCTCAGCCACTT 1906 Query 361 GTCGCGCCCAATTTTCTTCGATGCACCCAAGGCCTGAATGACTGGCGCTGGCACCGCCTC 420 |||||||||||| ||||| |||||||| | |||| |||| ||| || || || |||| Sbjct 1905 GTCGCGCCCAATCTTCTTGGATGCACCGAGCGCCTTGATGATTGGGGCAGGGACTACCTC 1846 Query 421 GACGACAGCAAGCATCTTCGACAGCATCGCCTCATCGATGGCGAGCGACGAACGAACCGT 480 ||||||| | |||||||| || ||||||||||||||||| || |||||||| |||||| Sbjct 1845 GACGACACCGAGCATCTTGGAGAGCATCGCCTCATCGATCGCAAGCGACGACCGAACCAC 1786 Query 481 TTCCTTGTTCAT 492 ||||| |||| Sbjct 1785 ATCCTTCGTCAT 1774 >CP007238.1 Ensifer adhaerens OV14 plasmid pOV14c, complete sequence Length=125203 Score = 347 bits (384), Expect = 1e-91 Identities = 372/492 (76%), Gaps = 0/492 (0%) Strand=Plus/Minus Query 1 TTAGTCTCCGTTGGTTTCGTTTTGCGACCCCTTGTACTCCTCGTACAAGCGATCCATGCG 60 ||||||||||||| |||| | | ||| || |||||||| |||||||| ||||| ||| | Sbjct 115398 TTAGTCTCCGTTGTTTTCCTGCTTCGATCCTTTGTACTCATCGTACAAACGATCTATGTG 115339 Query 61 AGAAGACAGCCATTCGCTGAAAGGCTTGGCTTCTACATTCGTGAGCTCGATGGCAACCTT 120 | |||||||| |||||||| ||||| ||||| ||||||| |||||||| |||||||| Sbjct 115338 GGCTGACAGCCACTCGCTGAAGGGCTTCGCTTCGACATTCGAAAGCTCGATCGCAACCTT 115279 Query 121 CTTCGCTTTGGCGGTCATCGCGAAATTCAGCGAGCGATCAGACGAGATCCAGTCTTTTGC 180 ||||| |||||| ||||| |||||||||| || ||| ||| |||| || | | Sbjct 115278 CTTCGATTTGGCATTCATCACGAAATTCAGTGACGTATCGCTCGAAGTCCAATCCCTCCC 115219 Query 181 TGCGGTATCGGCTTTGGGCATTTTTGCAGCCGATTTGGCCTTGTATCGCTTCACGTAGTC 240 | | ||| |||||| | |||||| |||||||||||||||| ||||||| |||||| Sbjct 115218 GGACACACTGGCCTTGGGCTTCTTTGCAACCGATTTGGCCTTGTAGCGCTTCAGGTAGTC 115159 Query 241 ATGAAGTTCATCAAACCGCTCGGCTTCAGGAAGCCTTTGAAAGTCGGCCGAAGCTGCGTG 300 ||| || ||||| ||||||| | |||||| ||| ||| | |||| | | || Sbjct 115158 ATGGAGCTCATCGAACCGCTTGTCTTCAGTCAGCTCAACGAAGCCTGCCGTTTCGACATG 115099 Query 301 CTCAACAGCGACCTTGGAGAGGGCAGGGGCGAGTAGCAACTGCCGGAGGCTGAGCCAACG 360 ||| || ||||| ||||||||| || || | || || |||||||| ||||| || Sbjct 115098 CTCCGTGGCAACCTTCAGGAGGGCAGGAGCAAGAATCAGTTGACGGAGGCTAAGCCACCG 115039 Query 361 GTCGCGCCCAATTTTCTTCGATGCACCCAAGGCCTGAATGACTGGCGCTGGCACCGCCTC 420 ||||||||| || ||||| || || || | ||| | || | ||| || || ||||| Sbjct 115038 GTCGCGCCCGATCTTCTTGGACGCCCCGAGCACCTTTACGATCGACGCAGGGACGGCCTC 114979 Query 421 GACGACAGCAAGCATCTTCGACAGCATCGCCTCATCGATGGCGAGCGACGAACGAACCGT 480 |||||| | ||||| ||||| ||||||||||||||||| ||||||||||| |||||| Sbjct 114978 CACGACACCGAGCATTTTCGAAAGCATCGCCTCATCGATCGCGAGCGACGACCGAACCAC 114919 Query 481 TTCCTTGTTCAT 492 ||||| |||| Sbjct 114918 ATCCTTCGTCAT 114907 >AM236081.1 Rhizobium leguminosarum bv. viciae plasmid pRL7 complete genome, strain 3841 Length=151564 Score = 324 bits (358), Expect = 2e-84 Identities = 368/491 (75%), Gaps = 2/491 (0%) Strand=Plus/Minus Query 3 AGTCTCCGTTGGTTTCGTTTTGCGACCCCTTGTACTCCTCGTACAAGCGATCCATGCGAG 62 ||||||||||| |||| | | ||| || ||||||| |||||||| |||||||| | | Sbjct 79054 AGTCTCCGTTGTTTTCCTGCTTCGATCCTCTGTACTCGTCGTACAAACGATCCATTTGGG 78995 Query 63 AAGACAGCCATTCGCTGAAAGGCTTGGCTTCTACATTCGTGAGCTCGATGGCAACCTTCT 122 || ||||| |||||||| ||||| ||||| ||||||| || ||||| |||||||||| Sbjct 78994 CTGAAAGCCACTCGCTGAAGGGCTTCGCTTCGACATTCGAAAGTTCGATCGCAACCTTCT 78935 Query 123 TCGCTTTGGCGGTCATCGCGAAATTCAGCGA-GCGATCAGACGAGATCCAGTCTTTTGCT 181 ||| ||||||| |||| | |||||||| || ||| ||| ||| |||| || || | Sbjct 78934 TCGATTTGGCGTTCATTACAAAATTCAGTGAAGCG-TCACTCGATGTCCAATCCTTCCCG 78876 Query 182 GCGGTATCGGCTTTGGGCATTTTTGCAGCCGATTTGGCCTTGTATCGCTTCACGTAGTCA 241 | | ||| | |||| | ||||||||||||||| ||||||| ||||||| ||||||| Sbjct 78875 GGCGCGCTGGCCTGGGGCTTCTTTGCAGCCGATTTGACCTTGTACCGCTTCAGGTAGTCA 78816 Query 242 TGAAGTTCATCAAACCGCTCGGCTTCAGGAAGCCTTTGAAAGTCGGCCGAAGCTGCGTGC 301 ||||||||||| |||| || | | |||| ||| || || | | || || || Sbjct 78815 TGAAGTTCATCGAACCTCTTGTCCTCAGCCAGCGCAACGAACTCCACGGCTGCCGCACGC 78756 Query 302 TCAACAGCGACCTTGGAGAGGGCAGGGGCGAGTAGCAACTGCCGGAGGCTGAGCCAACGG 361 || | || || || ||||||| |||||||| || || || |||||||| | ||| | | Sbjct 78755 TCGATGGCAACTTTCAAGAGGGCGGGGGCGAGAAGTAATTGGCGGAGGCTCAACCACCTG 78696 Query 362 TCGCGCCCAATTTTCTTCGATGCACCCAAGGCCTGAATGACTGGCGCTGGCACCGCCTCG 421 || |||||||| ||||| || || || | ||| | || | |||||| |||| ||| Sbjct 78695 TCACGCCCAATCTTCTTGGACGCTCCGAGCACCTTGAGGATCGACGCTGGGACCGTCTCC 78636 Query 422 ACGACAGCAAGCATCTTCGACAGCATCGCCTCATCGATGGCGAGCGACGAACGAACCGTT 481 |||||| | |||||||| || |||||||| |||||||| ||||| || || |||||| | Sbjct 78635 ACGACACCGAGCATCTTTGAGAGCATCGCGTCATCGATCGCGAGTGATGATCGAACCACT 78576 Query 482 TCCTTGTTCAT 492 ||||| |||| Sbjct 78575 TCCTTCGTCAT 78565 >EF066650.1 Sinorhizobium meliloti strain SM11 plasmid pSmeSM11b, complete sequence Length=181251 Score = 221 bits (244), Expect = 1e-53 Identities = 351/497 (71%), Gaps = 10/497 (2%) Strand=Plus/Minus Query 1 TTAGTCTCCGTTGGTTTCGTTTTGCGACCCCTTGTACTCCTCGTACAAGCGATCCATGCG 60 ||| ||||||||| | || || |||| | |||| || || |||| | |||||||| Sbjct 2268 TTAATCTCCGTTGTTGTCAGGTTTAGACCGCCTGTATTCGTCATACAGCTGGTCCATGCG 2209 Query 61 AGAAGACAGCCATTCGCTGAAAGGCTTGGCTTCTACATTCGTGAGCTCGATGGCAACCTT 120 || ||||| || || || |||||||||||| ||||| |||||||| || ||||| Sbjct 2208 GCTCGAAAGCCAGTCACTAAATGGCTTGGCTTCTGTATTCGAAAGCTCGATAGCCACCTT 2149 Query 121 CTTCGCTTTGGCGGTCATCGCGAAATTCAGCGAGCGATCAGACGAGATCCAGTCTTTT-- 178 ||| | ||||| |||||| ||||||| ||||| ||| ||| | ||| ||||| Sbjct 2148 CTTGGACTTGGCATTCATCGAAAAATTCAACGAGCTGTCACGCGACACCCACTCTTTCCG 2089 Query 179 -GCTGCGGTATCGGCTTTGGGCATTTTTGCAGCCGATTTGGCCTTGTATCGCTTCACGTA 237 | ||||| || |||||| |||||||| |||| |||| ||||| ||||| | || Sbjct 2088 AGATGCGGA--CGTCTTTGGAT-TTTTTGCATCCGACTTGGATTTGTACCGCTTGAGATA 2032 Query 238 GTCATGAAGTTCATCAAACCGCTCGGCTTCAGGAAGCCTTTGAAAGTCGGCCGAAGCTGC 297 ||| || || || ||||||| | | | || | |||| | || || | ||| | Sbjct 2031 GTCGTGGAGGTCGTCAAACCTTTTGTCCTCGGAAAGCTCGAGGAATTCAGTATTAGCCAC 1972 Query 298 GTGCTCAACAGCGAC-CTTGGAG-AGGGCAGGGGCGAGTAGCAACTGCCGGAGGCTGAGC 355 | | || | ||| || |||| |||||||||| || | || |||| |||||| | | Sbjct 1971 GCGATC--CGTCGAAGCTCGGAGCAGGGCAGGGGTAAGCATCAGTTGCCTGAGGCTCAAC 1914 Query 356 CAACGGTCGCGCCCAATTTTCTTCGATGCACCCAAGGCCTGAATGACTGGCGCTGGCACC 415 || |||||||||||||||||| | || || | |||| ||| || || | || || Sbjct 1913 CACTTGTCGCGCCCAATTTTCTTTGCGGCGCCAACCGCCTTAATAACCGGAGGAGGGACG 1854 Query 416 GCCTCGACGACAGCAAGCATCTTCGACAGCATCGCCTCATCGATGGCGAGCGACGAACGA 475 | |||||||| | |||||||| ||||||||||| |||||||| ||||| || ||| Sbjct 1853 ACTTCGACGACGCCGAGCATCTTGGACAGCATCGCTTCATCGATAGCGAGGGAAACGCGA 1794 Query 476 ACCGTTTCCTTGTTCAT 492 || |||||| |||| Sbjct 1793 ACTACGTCCTTGGTCAT 1777 >CP016292.1 Rhizobium leguminosarum strain Vaf10 plasmid unnamed4, complete sequence Length=309378 Score = 206 bits (228), Expect = 3e-49 Identities = 345/495 (70%), Gaps = 8/495 (2%) Strand=Plus/Plus Query 1 TTAGTCTCCGTTGGTTTCGTTTTGCGACCCCTTGTACTCCTCGTACAAGCGATCCATGCG 60 ||| ||||||||| ||| || || | | |||| || ||||||| | ||||| || Sbjct 87158 TTAATCTCCGTTGTCTTCAGGTTTAGAACGCCTGTATTCGTCGTACAGCTGGTCCATTCG 87217 Query 61 AGAAGACAGCCATTCGCTGAAAGGCTTGGCTTCTACATTCGTGAGCTCGATGGCAACCTT 120 || ||||| || || || |||||||||||| |||| |||||||| || ||||| Sbjct 87218 GCTGGAGAGCCAATCACTAAATGGCTTGGCTTCTGTGTTCGAAAGCTCGATAGCCACCTT 87277 Query 121 CTTCGCTTTGGCGGTCATCGCGAAATTCAGCGAGCGATCAGACGAGATCCAGTCTTTTGC 180 ||| | |||||| |||||| ||| ||| ||||| ||| ||| | ||| ||||| || Sbjct 87278 CTTGGACTTGGCGTTCATCGAAAAACTCAACGAGCTATCGCGCGATACCCACTCTTTCGC 87337 Query 181 ---TGCGGTATCGGCTTTGGGCATTTTTGCAGCCGATTTGGCCTTGTATCGCTTCACGTA 237 ||| || ||||| ||| | |||||| | ||||||| |||||| ||||| | || Sbjct 87338 AGATGCCGT---CGCTTTCGGCTTCTTTGCATCTGATTTGGTCTTGTACCGCTTGAGATA 87394 Query 238 GTCATGAAGTTCATCAAACCGCTCGGCTTCAGGAAGCCTTTGAAAGTCGGCCGAAGCTGC 297 || || || || ||||| | || | | || | ||| | || || || ||| | Sbjct 87395 ATCGTGGAGGTCGTCAAATCTCTTGTCCTCGGAAAGTTCAAGGAACTCAGCGTTAGCCAC 87454 Query 298 GTGCTCAACAGCGACCTTGGAG-AGGGCAGGGGCGAGTAGCAACTGCCGGAGGCTGAGCC 356 | | || | | || | || |||||||||| || | || |||| |||||| |||| Sbjct 87455 GCGATCGGTCG-AAGCTCGTAGTAGGGCAGGGGTAAGCACCAGTTGCCTGAGGCTCAGCC 87513 Query 357 AACGGTCGCGCCCAATTTTCTTCGATGCACCCAAGGCCTGAATGACTGGCGCTGGCACCG 416 | || ||||| || ||||||| || || | |||| |||||||| || || || Sbjct 87514 ATTTATCCCGCCCTATCTTCTTCGCGGCGCCAACCGCCTTGATGACTGGAGCAGGGACGA 87573 Query 417 CCTCGACGACAGCAAGCATCTTCGACAGCATCGCCTCATCGATGGCGAGCGACGAACGAA 476 | ||||| || | |||||||| ||||||||||| ||||||||||| || || | |||| Sbjct 87574 CTTCGACAACGCCGAGCATCTTGGACAGCATCGCTTCATCGATGGCCAGGGATGTTCGAA 87633 Query 477 CCGTTTCCTTGTTCA 491 | |||||| ||| Sbjct 87634 CTACGTCCTTGGTCA 87648 >KM233683.1 Rhizobium leguminosarum bv. viciae plasmid pRleVF39a RepA (repA), RepB (repB), and RepC (repC) genes, complete cds Length=5638 Score = 206 bits (228), Expect = 3e-49 Identities = 345/495 (70%), Gaps = 8/495 (2%) Strand=Plus/Minus Query 1 TTAGTCTCCGTTGGTTTCGTTTTGCGACCCCTTGTACTCCTCGTACAAGCGATCCATGCG 60 ||| ||||||||| ||| || || | | |||| || ||||||| | ||||| || Sbjct 3491 TTAATCTCCGTTGTCTTCAGGTTTAGAACGCCTGTATTCGTCGTACAGCTGGTCCATTCG 3432 Query 61 AGAAGACAGCCATTCGCTGAAAGGCTTGGCTTCTACATTCGTGAGCTCGATGGCAACCTT 120 || ||||| || || || |||||||||||| |||| |||||||| || ||||| Sbjct 3431 GCTGGAGAGCCAATCACTAAATGGCTTGGCTTCTGTGTTCGAAAGCTCGATAGCCACCTT 3372 Query 121 CTTCGCTTTGGCGGTCATCGCGAAATTCAGCGAGCGATCAGACGAGATCCAGTCTTTTGC 180 ||| | |||||| |||||| ||| ||| ||||| ||| ||| | ||| ||||| || Sbjct 3371 CTTGGACTTGGCGTTCATCGAAAAACTCAACGAGCTATCGCGCGATACCCACTCTTTCGC 3312 Query 181 ---TGCGGTATCGGCTTTGGGCATTTTTGCAGCCGATTTGGCCTTGTATCGCTTCACGTA 237 ||| || ||||| ||| | |||||| | ||||||| |||||| ||||| | || Sbjct 3311 AGATGCCGT---CGCTTTCGGCTTCTTTGCATCTGATTTGGTCTTGTACCGCTTGAGATA 3255 Query 238 GTCATGAAGTTCATCAAACCGCTCGGCTTCAGGAAGCCTTTGAAAGTCGGCCGAAGCTGC 297 || || || || ||||| | || | | || | ||| | || || || ||| | Sbjct 3254 ATCGTGGAGGTCGTCAAATCTCTTGTCCTCGGAAAGTTCAAGGAACTCAGCGTTAGCCAC 3195 Query 298 GTGCTCAACAGCGACCTTGGAG-AGGGCAGGGGCGAGTAGCAACTGCCGGAGGCTGAGCC 356 | | || | | || | || |||||||||| || | || |||| |||||| |||| Sbjct 3194 GCGATCGGTCG-AAGCTCGTAGTAGGGCAGGGGTAAGCACCAGTTGCCTGAGGCTCAGCC 3136 Query 357 AACGGTCGCGCCCAATTTTCTTCGATGCACCCAAGGCCTGAATGACTGGCGCTGGCACCG 416 | || ||||| || ||||||| || || | |||| |||||||| || || || Sbjct 3135 ATTTATCCCGCCCTATCTTCTTCGCGGCGCCAACCGCCTTGATGACTGGAGCAGGGACGA 3076 Query 417 CCTCGACGACAGCAAGCATCTTCGACAGCATCGCCTCATCGATGGCGAGCGACGAACGAA 476 | ||||| || | |||||||| ||||||||||| ||||||||||| || || | |||| Sbjct 3075 CTTCGACAACGCCGAGCATCTTGGACAGCATCGCTTCATCGATGGCCAGGGATGTTCGAA 3016 Query 477 CCGTTTCCTTGTTCA 491 | |||||| ||| Sbjct 3015 CTACGTCCTTGGTCA 3001 Database: Nucleotide collection (nt) Posted date: Nov 18, 2016 8:25 AM Number of letters in database: 131,707,966,100 Number of sequences in database: 40,032,610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Matrix: blastn matrix:2 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 40032610 Number of Hits to DB: 1477508 Number of extensions: 3 Number of successful extensions: 3 Number of sequences better than 10: 1 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 2 Number of HSP's successfully gapped: 1 Length of query: 492 Length of database: 131707966100 Length adjustment: 37 Effective length of query: 455 Effective length of database: 130226759530 Effective search space: 59253175586150 Effective search space used: 59253175586150 A: 40 X1: 22 (20.1 bits) X2: 66 (59.5 bits) X3: 110 (99.2 bits) S1: 28 (26.5 bits) S2: 46 (42.8 bits)