########################################
# Program: needle
# Rundate: Thu 29 May 2008 18:31:23
# Commandline: needle
#    [-asequence] j01591.fasta
#    [-bsequence] aroGgene2.fasta
# Align_format: srspair
# Report_file: j01591.needle
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: J01591
# 2: AAM86599
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1060
# Identity:     820/1060 (77.4%)
# Similarity:   820/1060 (77.4%)
# Gaps:          14/1060 ( 1.3%)
# Score: 3132.0
# 
#
#=======================================

J01591             1 atgaattatcagaacgacgatttacgcatcaaagaaatcaaagagttact     50
                     ||||||||.|||||.||.||||||||.||.||||||||.||.||..|.||
AAM86599           1 atgaattaccagaatgatgatttacggattaaagaaattaaggaactcct     50

J01591            51 tcctcctgtcgcattgctggaaaaattccccgctactgaaaatgccgc-g     99
                     .||||||||.||.|||.|.||.|||||.|||.|.||.|..|||||.|| |
AAM86599          51 acctcctgttgcgttgttagagaaatttccctccacagttaatgcggcag    100

J01591           100 aatacggttgcccatgcccgaaaagcgatccataagatcctgaaaggtaa    149
                     || ||.||.|||.|..||||.||.||.||.||.||.|||.||...|.|.|
AAM86599         101 aa-accgtcgccaagacccggaatgctattcacaacatcttgcgtgctca    149

J01591           150 tgatgatcgcctgttggttgtgattggcccatgctcaattcatgatcctg    199
                     .|||||||||.||.||||.|||||||||||||||||.|||||||||.|..
AAM86599         150 ggatgatcgcttgctggtggtgattggcccatgctctattcatgatacgc    199

J01591           200 tcgcggcaaaagagtatgccactcgcttgctggcgctgcgtgaagagctg    249
                     ..|||||.|||||.|||||..|.||.||||||||.|||||||||||.|||
AAM86599         200 aagcggctaaagaatatgcggcccgtttgctggcactgcgtgaagaactg    249

J01591           250 aaagatgagctggaaatcgtaatgcgcgtctattttgaaaagccgcgtac    299
                     .|.|..|||||||||.|.||.|||||.||.||||||||||||||||||||
AAM86599         250 cagggcgagctggaagttgtcatgcgtgtttattttgaaaagccgcgtac    299

J01591           300 cacggtgggctggaaagggctgattaacgatccgcatatggataatagct    349
                     .||||||||.||||||||.|||||||||||||||||||||||.|||||||
AAM86599         300 aacggtgggttggaaaggcctgattaacgatccgcatatggacaatagct    349

J01591           350 tccagatcaacgacggtctgcgtatagcccgtaaattgctgcttgatatt    399
                     .|.|.|||||.||.|||.|.|||.|.||.|||.||||.||..|.||.|||
AAM86599         350 acgacatcaatgaaggtttacgtctggcgcgtgaattactcgtcgaaatt    399

J01591           400 aacgacagcggtctgccagcggcaggtgagtttctcgatatgatcacccc    449
                     |||||||||||..|.||.||.||.|||||||||.|.||||||||.||.||
AAM86599         400 aacgacagcgggttaccggccgccggtgagtttttggatatgattacgcc    449

J01591           450 acaatatctcgctgacctgatgagctggggcgcaattggcgcacgtacca    499
                     .||.|||||.|||||.||||||||||||||.||.||||||||||||||.|
AAM86599         450 gcagtatctggctgatctgatgagctggggagccattggcgcacgtacta    499

J01591           500 ccgaatcgcaggtgcaccgcgaactggcatcagggctttcttgtccggtc    549
                     |.|||||.|||||.||||||||||||||.||.||.||.|||||.||.||.
AAM86599         500 ctgaatctcaggttcaccgcgaactggcttctggtctgtcttgccccgtt    549

J01591           550 ggcttcaaaaatggcaccgacggtacgattaaagtggctatcgatgccat    599
                     ||.||.||||||||.||||||||.||.||||||||||||||.|||||.||
AAM86599         550 ggttttaaaaatggtaccgacggcaccattaaagtggctattgatgcgat    599

J01591           600 taatgccgccggtgcgccgcactgcttcctgtccgtaacgaaatgggggc    649
                     .||.||.|||.||||.||.|||||.|||.||||.||.||.||||||||.|
AAM86599         600 caacgcggccagtgccccacactgtttcttgtcggtgaccaaatggggtc    649

J01591           650 attcggcgattgtgaataccagcggtaacggcgattgccatatcattctg    699
                     |||||||||||||||||||...|||.||.||.|||||||||||||||.|.
AAM86599         650 attcggcgattgtgaatactgccggcaatggtgattgccatatcatttta    699

J01591           700 cgcggcggtaaagagcctaactacagcgcgaagcacgttgctgaa----g    745
                     ||.||.|||||||||||.||.||||||...|||||.|    ||||    |
AAM86599         700 cgtggtggtaaagagccgaattacagcagtaagcatg----tgaatgcgg    745

J01591           746 tgaaagaagggctgaacaaagcaggcctgccagcacaggtgatgatcgat    795
                     |.|||||||||||||..|||||.||||||..|.|.|||.|.|||||||||
AAM86599         746 ttaaagaagggctgattaaagcgggcctggaaccccagattatgatcgat    795

J01591           796 ttcagccatgctaactcgtccaaacaattcaaaaagcagatggatgtttg    845
                     ||||||||.||||||...|.||||||.||..|||||||||||||.||..|
AAM86599         796 ttcagccacgctaacagttgcaaacagtttcaaaagcagatggaagtggg    845

J01591           846 tgctgacgtttgccagcagattgccggtggcgaaaaggccattattggcg    895
                     ..|.||.||||||||.||.|||||....||.|||||..|.||.||.||||
AAM86599         846 aacggatgtttgccaacaaattgcgcaaggtgaaaaatctatcataggcg    895

J01591           896 tgatggtggaaagccatctggtggaaggcaatcagagcctcgagagcggg    945
                     |||||.|.|||||||||.|.||.|||||.|..||.|.|||.||.||.||.
AAM86599         896 tgatgatcgaaagccatttagtcgaaggtagccaaaacctggaaagtggt    945

J01591           946 gagccgctggcctacggtaagagcatcaccgatgcctgcatcggctggga    995
                     ||.||.||..||||.||..||||.||.|||||||||||.||.||||||.|
AAM86599         946 gaaccactaacctatggccagagtattaccgatgcctgtattggctggaa    995

J01591           996 agataccgatgctctgttacgtcaactggc--gaatgcagtaaaagcgcg   1043
                     ||||||.||.||.|||||.||.||..||||  ||  |||||.|.|||.||
AAM86599         996 agatactgaggcgctgttgcgccagttggctgga--gcagtgagagctcg   1043

J01591          1044 tcgcgggtaa   1053
                     .|||..|||.
AAM86599        1044 ccgccagtag   1053


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