RID: 3DJ9W8TT013 Job Title:POL_CAEVC P33459 Pol polyprotein (Protease)... Program: BLASTP Query: unnamed protein product ID: lcl|Query_7277924(amino acid) Length: 713 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Pol polyprotein; Contains: RecName: Full=Proteas... Caprine arth... NA 11661 1465 1465 100% 0.0 100.00 1109 P33459.1 RecName: Full=Pol polyprotein; Contains: RecName: Full=Proteas... Ovine lentiv... NA 11664 1256 1256 100% 0.0 83.45 1086 P16901.1 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Visna lentiv... NA 11743 1251 1251 100% 0.0 82.19 1506 P23426.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Visna/maedi ... NA 36374 1249 1249 100% 0.0 82.05 1506 P35956.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Visna lentiv... NA 11744 1248 1248 100% 0.0 81.91 1506 P23427.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Visna lentiv... NA 11742 1248 1248 100% 0.0 81.91 1506 P03370.2 RecName: Full=Pol polyprotein; Contains: RecName: Full=Proteas... Feline immun... NA 11675 529 529 100% 2e-173 43.29 1124 P19028.1 RecName: Full=Pol polyprotein; Contains: RecName: Full=Proteas... Feline immun... NA 31676 524 524 100% 2e-171 42.27 1124 P31822.1 RecName: Full=Pol polyprotein; Contains: RecName: Full=Proteas... Feline immun... NA 11674 522 522 100% 1e-170 42.74 1124 P16088.1 RecName: Full=Pol polyprotein; Contains: RecName: Full=Proteas... Equine infec... NA 31675 489 489 100% 5e-158 39.89 1146 P32542.1 RecName: Full=Pol polyprotein; Contains: RecName: Full=Proteas... Equine infec... NA 11670 489 489 100% 5e-158 39.89 1146 P11204.1 RecName: Full=Pol polyprotein; Contains: RecName: Full=Proteas... Equine infec... NA 11672 489 489 100% 6e-158 40.30 1145 P03371.1 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... SIVcpz EK505 NA 388912 380 380 75% 5e-115 42.44 1448 Q1A249.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11695 379 379 78% 2e-114 41.22 1432 P18802.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr170Gag-Pol;... Jembrana dis... NA 36370 379 379 98% 2e-114 34.99 1432 Q82851.1 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11699 376 376 78% 2e-113 41.04 1434 P20892.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11697 376 376 78% 2e-113 41.22 1440 P04588.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:F2_M... NA 388823 375 375 75% 4e-113 41.17 1434 Q9QBZ1.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:B_89.6 NA 401671 374 374 78% 1e-112 41.04 1435 Q73368.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11683 373 373 78% 3e-112 40.52 1436 P12499.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 362651 372 372 78% 5e-112 40.35 1435 P35963.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:H_VI991 NA 388888 372 372 75% 6e-112 41.06 1436 Q9Q720.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:B_AR... NA 11685 371 371 75% 2e-111 41.17 1437 P03369.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11688 371 371 75% 2e-111 40.98 1439 P20875.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11701 370 370 75% 2e-111 40.80 1436 P05959.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:F2_M... NA 388815 370 370 78% 2e-111 40.35 1430 Q9QBZ5.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:B_HXB2R NA 11706 370 370 75% 3e-111 41.35 1435 P04585.4 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:G_SE... NA 388824 370 370 78% 3e-111 40.24 1433 O89940.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11686 370 370 75% 3e-111 41.35 1447 P03367.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:B_MN NA 11696 370 370 75% 4e-111 40.98 1441 P05961.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11682 370 370 78% 5e-111 40.52 1447 P04587.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:H_90... NA 388826 369 369 78% 6e-111 40.17 1435 O93215.4 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 O_MVP5180 NA 388816 369 369 78% 6e-111 40.00 1446 Q79666.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 N_YBF30 NA 388818 369 369 75% 7e-111 40.50 1449 O91080.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 82834 369 369 75% 7e-111 41.35 1435 P0C6F2.1 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11678 369 369 75% 9e-111 41.35 1447 P03366.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11698 367 367 78% 3e-110 40.17 1435 P12497.4 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:C_92... NA 388812 367 367 78% 4e-110 41.22 1431 O12158.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:K_96... NA 388906 367 367 78% 4e-110 40.52 1430 Q9QBY3.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11703 367 367 75% 5e-110 40.98 1428 P24740.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:C_ET... NA 388796 366 366 78% 9e-110 40.45 1439 Q75002.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:K_97... NA 388907 366 366 78% 1e-109 40.17 1429 Q9QBZ9.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:J_SE... NA 388905 365 365 75% 3e-109 40.44 1432 Q9WC54.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:F1_9... NA 388814 364 364 78% 3e-109 39.83 1430 O89290.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11689 364 364 78% 5e-109 40.00 1435 P04589.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... SIVcpz MB66 NA 388911 363 363 78% 9e-109 40.00 1438 Q1A267.4 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 O_ANT70 NA 327105 362 362 78% 3e-108 40.00 1435 Q77373.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA 11732 362 362 79% 4e-108 39.32 1441 P22382.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:J_SE... NA 388904 361 361 78% 4e-108 40.00 1432 Q9WC63.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 N_YBF106 NA 388819 362 362 78% 4e-108 40.17 1449 Q9IDV9.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA 11734 358 358 79% 7e-107 41.07 1448 P05897.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:F1_V... NA 388813 356 356 78% 4e-106 39.93 1430 Q9QSR3.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... SIVcpz GAB1 NA 402771 355 355 75% 4e-106 40.98 1384 P17283.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:G_92... NA 388825 355 355 78% 5e-106 39.38 1435 O41798.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11718 355 355 79% 7e-106 40.69 1462 P12451.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA 11733 355 355 79% 8e-106 40.31 1448 P05896.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... SIVcpz TAN1 NA 388910 355 355 76% 9e-106 39.78 1462 Q8AII1.4 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr170Gag-Pol;... Bovine immun... NA 417296 352 352 98% 1e-104 34.98 1475 P19560.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA 11738 351 351 78% 2e-104 39.65 1449 P19505.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA 11737 351 351 78% 3e-104 39.30 1449 P12502.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11714 351 351 79% 4e-104 40.41 1550 P18096.4 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11713 350 350 78% 5e-104 39.86 1462 P17757.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11721 350 350 78% 5e-104 40.83 1463 P20876.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-2 B_EHO NA 388821 349 349 79% 1e-103 39.25 1464 Q89928.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11717 348 348 78% 2e-103 40.21 1464 P18042.4 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11719 348 348 78% 2e-103 40.24 1461 P05962.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11715 348 348 78% 2e-103 40.21 1462 P24107.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-2 B_UC1 NA 388822 347 347 79% 1e-102 39.21 1471 Q76634.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 73484 346 346 78% 1e-102 40.73 1463 Q74120.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11720 345 345 78% 3e-102 40.21 1464 P04584.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA 11727 335 335 76% 1e-98 39.10 1470 P27973.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA 31684 329 329 76% 2e-96 36.96 1472 Q02836.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11716 324 324 79% 8e-95 38.79 1465 P15833.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA 11730 317 317 77% 5e-92 36.94 1465 P27980.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA 11731 308 308 77% 5e-89 36.70 1467 P05895.2 RecName: Full=Intracisternal A-particle Pol-related polyprotei... Mouse intrac... NA 11753 170 170 73% 6e-43 26.98 867 P11368.1 RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName:... Jaagsiekte s... NA 11746 171 236 84% 8e-43 27.35 1726 P31623.2 RecName: Full=Intracisternal A-particle Pol-related polyprotei... Golden hamst... NA 11752 165 165 66% 3e-41 28.84 863 P04026.1 RecName: Full=Endogenous retrovirus group K member 18 Pol... Homo sapiens human 9606 162 162 74% 2e-40 26.46 812 Q9QC07.2 RecName: Full=Endogenous retrovirus group K member 8 Pol... Homo sapiens human 9606 163 163 67% 2e-40 27.86 956 P63133.1 RecName: Full=Endogenous retrovirus group K member 11 Pol... Homo sapiens human 9606 162 162 75% 3e-40 26.32 969 Q9UQG0.2 RecName: Full=Endogenous retrovirus group K member 7 Pol... Homo sapiens human 9606 161 161 67% 7e-40 27.66 1459 P63135.1 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Rous sarcoma... NA 269447 159 159 72% 3e-39 29.11 1603 O92956.2 RecName: Full=Endogenous retrovirus group K member 6 Pol... Homo sapiens human 9606 159 159 68% 4e-39 27.40 956 Q9BXR3.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Avian leukos... NA 11864 157 157 72% 2e-38 29.04 1603 Q7SQ98.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Avian leukos... NA 363745 157 157 72% 2e-38 28.93 1603 Q04095.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Rous sarcoma... NA 11888 156 156 72% 3e-38 29.04 1603 P03354.2 RecName: Full=Endogenous retrovirus group K member 10 Pol... Homo sapiens human 9606 155 155 74% 4e-38 25.75 1014 P10266.2 RecName: Full=Endogenous retrovirus group K member 25 Pol... Homo sapiens human 9606 154 154 42% 9e-38 32.33 954 P63136.1 RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName:... Mouse mammar... NA 11758 155 209 89% 9e-38 25.50 1755 P03365.3 RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName:... Mouse mammar... NA 11759 153 207 89% 4e-37 25.23 1755 P11283.2 RecName: Full=Endogenous retrovirus group K member 113 Pol... Homo sapiens human 9606 150 150 68% 2e-36 26.85 959 P63132.2 RecName: Full=Endogenous retrovirus group K member 19 Pol... Homo sapiens human 9606 148 148 68% 9e-36 26.65 959 Q9WJR5.2 RecName: Full=Gag-Pro-Pol polyprotein; AltName:... HTLV-3 strai... NA 402036 147 147 48% 3e-35 29.89 1440 Q0R5R2.3 RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName:... Squirrel mon... NA 11856 145 145 39% 1e-34 33.81 1880 P03364.3 RecName: Full=Gag-Pro-Pol polyprotein; AltName:... Human T-cell... NA 406769 145 145 48% 1e-34 29.23 1440 Q4U0X6.4 RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName:... Simian retro... NA 39068 140 193 58% 6e-33 31.19 1768 P51517.2 RecName: Full=Gag-Pro-Pol polyprotein; AltName: Full=Pr180;... Mason-Pfizer... NA 11855 135 196 61% 2e-31 30.46 1771 P07572.2 RecName: Full=Gag-Pro-Pol polyprotein; AltName:... Human T-lymp... NA 11909 131 131 48% 4e-30 28.00 1461 P03363.4 RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName:... Simian retro... NA 11942 130 193 58% 1e-29 31.79 1772 P04025.2 RecName: Full=Gag-Pro-Pol polyprotein; AltName:... Human T-cell... NA 11926 127 127 37% 8e-29 32.09 1462 P03362.3 RecName: Full=Gag-Pro-Pol polyprotein; AltName:... Human T-cell... NA 11927 126 126 37% 1e-28 31.44 1462 P14078.3 RecName: Full=Gag-Pro-Pol polyprotein; AltName:... HTLV-1 isola... NA 402046 126 126 37% 2e-28 31.82 1462 P0C211.2 RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName:... Bovine leuke... NA 11907 125 125 34% 2e-28 32.24 1416 P03361.2 RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName:... Bovine leuke... NA 11903 124 124 34% 6e-28 31.43 1416 P25059.2 RecName: Full=Endogenous retrovirus group K member 9 Pol... Homo sapiens human 9606 110 110 21% 9e-24 40.54 1117 P63128.3 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Walleye derm... NA 39720 93.2 93.2 28% 4e-18 32.21 1752 O92815.2 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Rabbitpox vi... NA 45417 84.0 84.0 19% 7e-18 34.07 147 Q6RZR1.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Monkeypox virus NA 10244 84.0 84.0 19% 9e-18 34.07 151 A0A7H0DN19.1 RecName: Full=Pro-Pol polyprotein; AltName: Full=Pr125Pol;... Human spumar... NA 11963 91.3 91.3 39% 1e-17 28.22 1143 P14350.2 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Vaccinia vir... NA 10249 83.6 83.6 19% 1e-17 34.07 147 P68634.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Vaccinia vir... NA 10254 83.6 83.6 19% 1e-17 34.07 147 P17374.2 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Cowpox virus... NA 265871 83.2 83.2 19% 2e-17 34.07 147 P87630.1 RecName: Full=Pro-Pol polyprotein; AltName: Full=Pr125Pol;... Pan troglody... NA 298339 90.1 90.1 40% 3e-17 27.61 1146 Q87040.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Variola viru... NA 587200 82.0 82.0 19% 4e-17 33.33 147 P0DSZ7.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Camelpox vir... NA 203172 80.9 80.9 19% 1e-16 33.33 147 Q775Z7.1 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Reticuloendo... NA 11636 86.7 86.7 30% 4e-16 28.83 1152 P03360.2 RecName: Full=Pol polyprotein; Contains: RecName: Full=Reverse... Feline endog... NA 11766 85.5 85.5 28% 8e-16 28.16 1046 P31792.1 RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contain... Moloney muri... NA 928306 85.1 85.1 28% 1e-15 28.64 1738 P03355.5 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... AKR (endogen... NA 11791 84.7 84.7 26% 2e-15 29.32 1734 P03356.3 RecName: Full=Pro-Pol polyprotein; AltName: Full=Pr125Pol;... Feline foamy... NA 53182 84.3 84.3 33% 2e-15 29.34 1156 O93209.1 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Friend murin... NA 11796 84.7 84.7 31% 2e-15 27.71 1739 P26810.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Friend murin... NA 11797 84.7 84.7 31% 2e-15 27.71 1738 P26809.2 RecName: Full=Gag-pol polyprotein; Contains: RecName:... Murine leuke... NA 31687 84.3 84.3 30% 2e-15 27.98 1734 Q7SVK7.2 RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contain... Xenotropic M... NA 373193 84.0 84.0 30% 3e-15 27.98 1733 A1Z651.1 RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contain... Xenotropic M... NA 356663 84.0 84.0 30% 3e-15 27.98 1733 Q2F7J3.1 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Friend murin... NA 11798 84.0 84.0 31% 3e-15 27.27 1738 P26808.2 RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contain... Xenotropic M... NA 356664 84.0 84.0 30% 3e-15 27.98 1733 Q2F7J0.1 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Baboon endog... NA 11764 83.2 83.2 30% 4e-15 28.44 1727 P10272.2 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Clostridium ... NA 431943 75.9 75.9 18% 5e-15 37.40 143 A5N7A5.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Clostridium ... NA 386415 75.9 75.9 17% 6e-15 37.40 142 A0Q1N5.1 RecName: Full=Intracisternal A-particle Pol-related polyprotei... Mouse intrac... NA 11754 81.6 81.6 56% 1e-14 23.39 814 P12894.1 RecName: Full=Pro-Pol polyprotein; AltName: Full=Pr125Pol;... Macaque simi... NA 338478 80.9 80.9 32% 2e-14 29.06 1149 P23074.3 RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contain... Cas-Br-E mur... NA 11792 81.3 81.3 31% 2e-14 27.27 1733 P08361.2 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Cutibacteriu... NA 267747 74.3 74.3 17% 2e-14 33.61 152 Q6A8W1.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Acaryochlori... NA 329726 73.9 73.9 17% 3e-14 35.54 143 B0C9N7.1 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Radiation mu... NA 11787 79.7 79.7 28% 5e-14 27.67 1734 P11227.2 RecName: Full=Pro-Pol polyprotein; AltName: Full=Pr125Pol;... Simian foamy... NA 11644 79.7 79.7 30% 5e-14 28.24 1143 P27401.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Woolly monke... NA 11970 77.4 77.4 30% 3e-13 25.23 1687 P03359.2 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Leifsonia xy... NA 281090 70.5 70.5 16% 6e-13 33.06 152 Q6AFE0.1 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Feline leuke... NA 11768 76.3 76.3 25% 6e-13 27.81 1712 P10273.2 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Fowl aviaden... NA 66295 70.5 70.5 18% 7e-13 33.08 163 Q9YYS0.1 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr125Pol;... Koala retrov... NA 394239 75.9 75.9 30% 9e-13 25.23 1687 Q9TTC1.2 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Gloeobacter ... NA 251221 69.3 69.3 16% 1e-12 31.97 147 Q7NKL2.2 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Candida albi... NA 294748 68.9 68.9 16% 2e-12 35.25 159 C4YFC7.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Clostridioid... NA 1496 68.2 68.2 18% 2e-12 34.09 143 O30931.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Candidatus S... NA 234267 68.6 68.6 18% 2e-12 34.81 147 Q02BZ2.1 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Gibbon ape l... NA 11840 73.9 73.9 26% 3e-12 26.70 1686 P21414.2 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Trichodesmiu... NA 203124 66.6 66.6 16% 9e-12 34.17 142 Q113K0.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Fowl aviaden... NA 10553 67.4 67.4 16% 1e-11 33.05 178 Q89662.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Debaryomyces... NA 284592 66.6 66.6 19% 1e-11 32.62 160 Q6BRN7.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Burkholderia... NA 331272 65.5 65.5 17% 2e-11 33.87 148 A0K9T8.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Ralstonia pi... NA 402626 65.1 65.1 17% 3e-11 35.48 148 B2UAR0.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Nautilia pro... NA 598659 64.3 64.3 18% 6e-11 33.59 142 B9L823.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Burkholderia... NA 398577 63.5 63.5 17% 1e-10 33.06 148 B1YVA7.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Burkholderia... NA 216591 63.5 63.5 17% 1e-10 33.06 148 B4E900.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Pseudomonas ... NA 205922 63.2 63.2 16% 1e-10 34.43 151 Q3K4M6.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Candidatus P... NA 264201 63.2 63.2 18% 2e-10 32.59 150 Q6MEK7.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Paraburkhold... NA 391038 63.2 63.2 17% 2e-10 33.87 148 B2JDY5.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Burkholderia... NA 269482 62.8 62.8 17% 2e-10 33.06 148 A4JH35.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Pseudomonas ... NA 223283 62.8 62.8 17% 2e-10 33.06 151 Q88BD3.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Ralstonia ps... NA 267608 62.4 62.4 17% 3e-10 33.87 148 Q8XWL1.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Polynucleoba... NA 452638 62.4 62.4 16% 3e-10 34.43 149 B1XW28.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Burkholderia... NA 339670 62.0 62.0 17% 3e-10 32.26 148 Q0BCK5.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... uncultured m... NA 133804 62.0 62.0 17% 3e-10 32.58 139 Q9F7S4.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Aeromonas sa... NA 382245 62.4 62.4 16% 4e-10 31.97 152 A4STD7.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Pseudomonas ... NA 216595 62.0 62.0 17% 4e-10 33.87 151 C3K473.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Nakaseomyces... NA 284593 61.6 61.6 18% 5e-10 30.23 144 Q6FKQ6.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Streptomyces... NA 227882 62.4 62.4 17% 6e-10 30.23 175 Q82KK4.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Actinobacill... NA 339671 61.6 61.6 16% 6e-10 33.61 151 A6VK96.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Idiomarina l... NA 283942 61.2 61.2 16% 8e-10 33.61 151 Q5QZB6.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Aeromonas hy... NA 380703 61.2 61.2 16% 8e-10 31.97 152 A0KEM6.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Ectopseudomo... NA 399739 61.2 61.2 17% 9e-10 33.06 151 A4Y0K9.1 RecName: Full=Putative enzymatic polyprotein; Includes: RecNam... Cassava vein... NA 38062 65.5 65.5 36% 9e-10 27.76 652 Q89703.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Desulfitobac... NA 272564 60.8 60.8 16% 1e-09 34.15 151 B8FQZ6.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Saccharomyce... NA 559292 60.5 60.5 16% 1e-09 28.81 147 P33317.2 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Bordetella a... NA 360910 60.5 60.5 16% 1e-09 32.79 149 Q2L2L5.1 RecName: Full=Gag-Pro polyprotein; Contains: RecName:... Jaagsiekte s... NA 11746 65.1 65.1 17% 1e-09 31.45 866 P31625.3 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Tolumonas au... NA 595494 60.5 60.5 17% 2e-09 33.06 151 C4L816.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Hahella chej... NA 349521 60.5 60.5 17% 2e-09 32.82 152 Q2SN67.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Azotobacter ... NA 322710 60.5 60.5 17% 2e-09 30.65 151 C1DI55.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Haemophilus ... NA 374930 60.5 60.5 17% 2e-09 33.60 151 A5UDB4.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Burkholderia... NA 482957 60.1 60.1 17% 2e-09 30.65 148 Q39DM5.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Herminiimona... NA 204773 60.1 60.1 17% 2e-09 33.87 149 A4G3E3.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Bordetella p... NA 257311 60.1 60.1 16% 2e-09 33.61 149 Q7W8Z8.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Bordetella p... NA 257313 60.1 60.1 16% 2e-09 33.61 149 Q7VVR1.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Helicobacter... NA 570508 59.7 59.7 18% 2e-09 30.53 145 B6JM89.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Neisseria me... NA 122587 59.7 59.7 17% 2e-09 29.84 150 Q9JUW1.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Methylobacil... NA 265072 59.7 59.7 16% 3e-09 32.79 150 Q1H4K3.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Paraburkhold... NA 266265 59.7 59.7 17% 3e-09 30.65 148 Q13UV8.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Orientia tsu... NA 334380 59.7 59.7 18% 3e-09 30.15 148 B3CSS7.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Stutzerimona... NA 379731 59.7 59.7 17% 3e-09 30.65 151 A4VGS6.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Desulfotalea... NA 177439 59.3 59.3 17% 3e-09 32.82 150 Q6AJZ0.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Shewanella d... NA 318161 59.3 59.3 16% 3e-09 31.15 152 Q12SF7.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Burkholderia... NA 395019 59.3 59.3 17% 4e-09 31.45 148 A9AGN3.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Pseudomonas ... NA 384676 59.3 59.3 16% 4e-09 33.61 151 Q1I2U1.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Nitrosomonas... NA 335283 58.9 58.9 16% 4e-09 32.79 149 Q0AHX8.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Pseudomonas ... NA 390235 58.9 58.9 17% 4e-09 32.26 151 B1J4L9.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Paraburkhold... NA 398527 58.9 58.9 17% 4e-09 29.84 148 B2T6J1.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Hydrogenovib... NA 317025 58.9 58.9 17% 5e-09 34.65 153 Q31EC7.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Actinobacill... NA 416269 58.9 58.9 17% 5e-09 30.40 151 A3N3Q6.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Tropheryma w... NA 203267 58.5 58.5 18% 5e-09 29.32 146 Q83G43.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Pseudomonas ... NA 264730 58.9 58.9 17% 6e-09 32.26 151 Q48Q06.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Janthinobact... NA 375286 58.5 58.5 17% 6e-09 33.87 149 A6SW68.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Leptospira i... NA 267671 58.5 58.5 17% 6e-09 29.46 145 P61909.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Burkholderia... NA 271848 58.5 58.5 18% 6e-09 30.83 148 Q2T0H6.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Swinepox vir... NA 10277 58.2 58.2 18% 7e-09 29.46 142 P32208.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Neurospora c... NA 367110 58.9 58.9 13% 7e-09 31.63 165 Q6MVL2.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Legionella p... NA 272624 58.5 58.5 19% 7e-09 29.66 152 Q5ZSN0.2 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Legionella p... NA 297245 58.5 58.5 19% 7e-09 29.66 152 Q5WTW6.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Legionella p... NA 400673 58.5 58.5 19% 8e-09 29.66 152 A5IEX1.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Rhodoferax f... NA 338969 58.2 58.2 16% 9e-09 32.79 149 Q21V41.1 RecName: Full=Probable deoxyuridine 5'-triphosphate... Schizosaccha... NA 284812 57.8 57.8 16% 9e-09 29.66 140 Q9P6Q5.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Pseudomonas ... NA 220664 58.2 58.2 17% 1e-08 32.26 151 Q4K3S2.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Enterobacter... NA 399742 58.2 58.2 16% 1e-08 32.79 152 A4W509.1 RecName: Full=Gag-Pro polyprotein; Contains: RecName:... Simian retro... NA 11942 62.4 62.4 19% 1e-08 29.20 912 P04024.2 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Actinobacill... NA 434271 57.8 57.8 17% 1e-08 30.40 151 B0BTZ3.1 RecName: Full=Enzymatic polyprotein; Includes: RecName:... Cauliflower ... NA 10648 62.0 62.0 35% 1e-08 27.34 679 P03554.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Neisseria me... NA 374833 57.8 57.8 17% 1e-08 29.92 150 A9M439.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Bdellovibrio... NA 264462 57.8 57.8 15% 1e-08 33.94 149 P61906.1 RecName: Full=Enzymatic polyprotein; Includes: RecName:... Cauliflower ... NA 31556 62.0 62.0 35% 1e-08 27.73 679 Q02964.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... [Mannheimia]... NA 221988 57.8 57.8 16% 1e-08 32.79 151 Q65R66.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Neisseria me... NA 122586 57.8 57.8 17% 1e-08 29.92 150 Q9JZU7.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Neisseria go... NA 521006 57.8 57.8 17% 1e-08 29.92 150 B4RKH1.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Legionella p... NA 297246 57.8 57.8 19% 1e-08 29.66 152 Q5X242.1 RecName: Full=Enzymatic polyprotein; Includes: RecName:... Cauliflower ... NA 10644 61.6 61.6 35% 1e-08 27.73 679 P03555.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Corynebacter... NA 257309 57.8 57.8 17% 1e-08 32.31 152 P61907.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Nitrosomonas... NA 228410 57.4 57.4 16% 1e-08 31.97 149 Q82UM1.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Klebsiella p... NA 507522 57.8 57.8 16% 1e-08 31.97 152 B5XTG3.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Pseudomonas ... NA 205918 57.4 57.4 17% 2e-08 32.26 151 Q4ZZX9.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Dictyoglomus... NA 309799 57.4 57.4 14% 2e-08 33.00 147 B5YDD8.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Nitrosospira... NA 323848 57.4 57.4 17% 2e-08 33.06 149 Q2Y742.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Candidatus H... NA 572265 57.4 57.4 16% 2e-08 29.51 151 C4K8Y6.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Thiobacillus... NA 292415 57.0 57.0 16% 2e-08 31.15 146 Q3SFR7.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Acinetobacte... NA 62977 57.0 57.0 16% 2e-08 31.71 150 Q6FDR0.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Eremothecium... NA 284811 57.0 57.0 16% 3e-08 29.41 153 Q74ZF0.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Pseudomonas ... NA 160488 57.0 57.0 17% 3e-08 31.45 151 Q88C95.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Photorhabdus... NA 243265 57.0 57.0 16% 3e-08 31.97 152 Q7MAX3.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Aquifex aeol... NA 224324 56.6 56.6 16% 3e-08 33.61 150 O66592.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Proteus mira... NA 529507 56.6 56.6 16% 3e-08 31.15 151 B4F0W6.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Cronobacter ... NA 290339 56.6 56.6 16% 3e-08 31.15 152 A7MQ93.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Escherichia ... NA 331111 56.6 56.6 16% 3e-08 31.15 151 A7ZTJ1.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Shigella fle... NA 373384 56.6 56.6 16% 3e-08 31.15 151 Q0SYG7.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Citrobacter ... NA 290338 56.6 56.6 16% 3e-08 31.15 152 A8ARM7.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Escherichia ... NA 481805 56.6 56.6 16% 3e-08 31.15 152 B1IYW0.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Shigella fle... NA 623 56.6 56.6 16% 3e-08 31.15 152 Q83PN3.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Leptothrix c... NA 395495 56.6 56.6 16% 3e-08 31.15 150 B1Y839.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Polynucleoba... NA 312153 56.6 56.6 16% 3e-08 33.61 149 A4SZP2.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Corynebacter... NA 306537 56.6 56.6 17% 3e-08 29.32 155 Q4JVB1.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Zymomonas mo... NA 264203 56.2 56.2 17% 3e-08 29.27 146 Q9X3X5.3 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Yersinia pse... NA 349747 56.6 56.6 17% 3e-08 31.20 151 A7FCT2.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Escherichia ... NA 585057 56.6 56.6 16% 4e-08 31.15 151 B7NQ01.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Burkholderia... NA 320388 56.2 56.2 17% 4e-08 30.53 148 A1V6V5.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Pasteurella ... NA 272843 56.2 56.2 17% 4e-08 32.00 151 P57914.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Chlorobaculu... NA 517417 56.2 56.2 15% 4e-08 29.09 150 B3QML1.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Alcanivorax ... NA 393595 56.2 56.2 17% 4e-08 29.77 150 Q0VT60.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Escherichia ... NA 316385 56.2 56.2 16% 5e-08 30.33 151 B1X974.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Escherichia ... NA 83333 56.2 56.2 16% 5e-08 30.33 152 P06968.2 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Pseudomonas ... NA 76869 55.8 55.8 17% 5e-08 30.65 151 B0KQ89.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Shigella son... NA 300269 55.8 55.8 16% 5e-08 31.15 151 Q3YW02.1 RecName: Full=Gag-Pro polyprotein; AltName: Full=Pr95; Contain... Mason-Pfizer... NA 11855 60.1 60.1 19% 5e-08 28.47 911 P07570.2 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Pseudomonas ... NA 381754 55.8 55.8 17% 5e-08 29.84 151 A6VEC8.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Yersinia ent... NA 393305 55.8 55.8 17% 6e-08 31.20 151 A1JHX0.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Serratia pro... NA 399741 55.8 55.8 17% 6e-08 29.84 152 A8GLE7.1 RecName: Full=Putative deoxyuridine 5'-triphosphate... Frog virus 3... NA 654924 55.8 55.8 19% 7e-08 25.56 164 Q6GZR2.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Beijerinckia... NA 395963 55.8 55.8 15% 7e-08 33.03 160 B2IKJ9.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Escherichia ... NA 585035 55.5 55.5 16% 7e-08 31.15 151 B7MFK1.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Escherichia ... NA 405955 55.5 55.5 16% 8e-08 31.15 152 A1AHH1.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Klebsiella p... NA 272620 55.5 55.5 16% 8e-08 31.15 152 A6TFN1.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Psychromonas... NA 357804 55.5 55.5 17% 9e-08 30.65 151 A1SR17.1 RecName: Full=Enzymatic polyprotein; Includes: RecName:... Cauliflower ... NA 10645 58.9 58.9 35% 1e-07 26.95 674 P03556.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Dictyoglomus... NA 515635 55.1 55.1 14% 1e-07 33.00 147 B8E029.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Salmonella e... NA 554290 55.1 55.1 16% 1e-07 31.15 151 B5BI14.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Pseudomonas ... NA 351746 55.1 55.1 17% 1e-07 30.65 151 A5WB04.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Salmonella e... NA 1016998 55.1 55.1 16% 1e-07 31.15 152 A9MVN5.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Methylibium ... NA 420662 55.1 55.1 16% 1e-07 32.79 149 A2SIY4.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Shewanella l... NA 323850 55.1 55.1 16% 1e-07 31.97 152 A3QIQ1.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Glaesserella... NA 557723 54.7 54.7 16% 1e-07 30.33 151 B8F854.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Pseudomonas ... NA 208963 54.7 54.7 17% 1e-07 29.84 151 Q02E41.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Chlorobium l... NA 290315 54.7 54.7 16% 1e-07 29.51 153 B3EIP1.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Paramecium b... NA 10506 54.7 54.7 13% 1e-07 31.52 141 O41033.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Francisella ... NA 484022 54.7 54.7 17% 1e-07 32.28 148 B0U0Z5.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Shewanella f... NA 318167 54.7 54.7 16% 2e-07 31.97 152 Q07WF9.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Chromobacter... NA 243365 54.3 54.3 16% 2e-07 29.51 150 Q7MBE8.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Dechloromona... NA 159087 54.3 54.3 16% 2e-07 32.79 149 Q47BB1.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Yaba monkey ... NA 928314 54.3 54.3 20% 2e-07 26.21 143 Q6TUZ4.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Psittacid he... NA 670426 57.4 57.4 17% 2e-07 29.63 414 Q6UDM0.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Shewanella s... NA 60481 54.3 54.3 16% 2e-07 29.51 152 Q0HZU5.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Salmonella e... NA 41514 53.9 53.9 16% 2e-07 31.15 152 A9MKN5.1 RecName: Full=Enzymatic polyprotein; Includes: RecName:... Figwort mosa... NA 10650 57.8 57.8 34% 3e-07 25.49 666 P09523.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Pelodictyon ... NA 319225 53.9 53.9 16% 3e-07 28.69 148 Q3B304.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Baumannia ci... NA 374463 53.9 53.9 17% 3e-07 30.00 150 Q1LTS1.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Sodalis glos... NA 343509 53.5 53.5 16% 3e-07 30.33 151 Q2NQU0.1 RecName: Full=Enzymatic polyprotein; Includes: RecName:... Cauliflower ... NA 31557 57.0 57.0 36% 4e-07 26.14 680 Q00962.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Shewanella s... NA 94122 53.5 53.5 16% 4e-07 29.51 152 A0L1S1.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Pseudomonas ... NA 557722 53.1 53.1 17% 5e-07 29.84 151 B7V5L2.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Nitrosococcu... NA 323261 53.1 53.1 17% 5e-07 33.06 151 Q3J6W1.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Shewanella s... NA 351745 52.8 52.8 16% 7e-07 29.51 152 A1REU2.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Shewanella o... NA 211586 52.8 52.8 16% 7e-07 27.87 152 Q8E9M0.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Kluyveromyce... NA 284590 52.8 52.8 16% 7e-07 29.75 148 Q6CQN7.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Rhodococcus ... NA 234621 52.8 52.8 13% 8e-07 31.68 164 C0ZYU5.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Halorhodospi... NA 349124 52.4 52.4 15% 9e-07 34.51 153 A1WZE9.1 RecName: Full=Ribonuclease H; Short=RNase H [Bradyrhizobium... Bradyrhizobi... NA 224911 52.4 52.4 17% 9e-07 31.91 154 Q89UU3.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Suid herpesv... NA 33703 54.3 54.3 18% 1e-06 25.33 268 Q90030.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Pectobacteri... NA 561230 52.0 52.0 16% 1e-06 28.69 152 C6DIC3.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Mycobacteriu... NA 243243 52.0 52.0 13% 1e-06 30.69 154 A0QIM8.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Shewanella b... NA 325240 51.6 51.6 16% 2e-06 29.51 152 A3CZJ4.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Pectobacteri... NA 218491 51.6 51.6 16% 2e-06 28.69 152 Q6DAV9.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Shewanella b... NA 402882 51.2 51.2 16% 2e-06 29.51 152 A6WIA4.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Francisella ... NA 458234 50.8 50.8 15% 3e-06 28.95 148 A7N9S0.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Lactococcus ... NA 272623 50.8 50.8 19% 3e-06 29.45 150 Q9CJ30.1 RecName: Full=dCTP deaminase, dUMP-forming; AltName:... Acetivibrio ... NA 203119 51.2 51.2 16% 4e-06 24.35 178 A3DFH7.1 RecName: Full=Ribonuclease H; Short=RNase H [Novosphingobium... Novosphingob... NA 279238 50.1 50.1 16% 4e-06 32.12 143 Q2G9E3.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Francisella ... NA 401614 50.4 50.4 15% 4e-06 28.07 148 A0Q4H7.1 RecName: Full=Polyprotein P3; Includes: RecName: Full=Putative... Commelina ye... NA 10653 53.9 53.9 26% 5e-06 25.26 1886 P19199.2 RecName: Full=Gag-Pro polyprotein; Contains: RecName:... Mouse mammar... NA 11758 53.1 53.1 17% 6e-06 34.13 860 P10271.2 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Heliomicrobi... NA 498761 50.1 50.1 18% 7e-06 27.48 163 B0TAH2.1 RecName: Full=Gag-Pro polyprotein; Contains: RecName:... Mouse mammar... NA 11759 53.1 53.1 17% 7e-06 34.13 860 Q9IZT2.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Acinetobacte... NA 400667 49.7 49.7 16% 8e-06 31.97 150 A3M324.2 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Fusobacteriu... NA 190304 49.3 49.3 18% 8e-06 29.10 146 Q8RER7.1 RecName: Full=Ribonuclease H; Short=RNase H [Psychromonas... Psychromonas... NA 357804 49.3 49.3 19% 1e-05 28.10 153 A1SS86.2 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Helicobacter... NA 235279 49.3 49.3 17% 1e-05 27.05 158 Q7VJU0.1 RecName: Full=Ribonuclease H; Short=RNase H [Campylobacter... Campylobacte... NA 360104 48.9 48.9 16% 1e-05 32.54 144 A8Z6F7.1 RecName: Full=Gag-Pro polyprotein; Contains: RecName:... Simian retro... NA 39068 52.4 52.4 17% 1e-05 26.77 908 P51518.2 RecName: Full=Retrovirus-related Pol polyprotein from transpos... Drosophila m... fruit fly 7227 52.4 52.4 21% 1e-05 29.63 1237 P10394.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Methylococcu... NA 243233 48.9 48.9 17% 2e-05 29.92 151 Q603M1.1 RecName: Full=Ribonuclease H; Short=RNase H [Agrobacterium... Agrobacteriu... NA 176299 48.5 48.5 15% 2e-05 29.69 146 Q8UHA7.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Aromatoleum ... NA 76114 48.1 48.1 15% 2e-05 32.14 149 Q5P7Z9.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Candidatus B... NA 291272 48.1 48.1 17% 2e-05 30.00 149 Q491W8.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Dichelobacte... NA 246195 48.1 48.1 9% 3e-05 30.88 154 A5EYG1.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Azoarcus ole... NA 418699 48.1 48.1 17% 3e-05 32.26 149 A1K4K1.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Candidatus B... NA 203907 48.1 48.1 16% 3e-05 30.65 151 Q7VRK0.1 RecName: Full=Enzymatic polyprotein; Includes: RecName:... Soybean chlo... NA 10651 50.8 50.8 28% 4e-05 25.71 692 P15629.2 RecName: Full=Ribonuclease H; Short=RNase H [Rhizobium etli CF... Rhizobium et... NA 347834 47.8 47.8 15% 4e-05 29.92 151 Q2KBL2.1 RecName: Full=dCTP deaminase, dUMP-forming; AltName:... Halothermoth... NA 373903 47.8 47.8 8% 5e-05 37.70 182 B8D0W3.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Human alphah... NA 10299 48.5 48.5 18% 1e-04 26.04 371 P10234.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Chlamydia ca... NA 227941 46.2 46.2 15% 1e-04 25.44 147 Q823Q9.1 RecName: Full=Ribonuclease H; Short=RNase H [Bradyrhizobium sp... Bradyrhizobi... NA 114615 45.4 45.4 17% 2e-04 30.99 154 A4Z216.1 RecName: Full=Ribonuclease H; Short=RNase H [Rhizobium... Rhizobium jo... NA 216596 45.1 45.1 11% 3e-04 32.26 151 Q1MKH6.1 RecName: Full=Ribonuclease H; Short=RNase H [Thiobacillus... Thiobacillus... NA 292415 44.7 44.7 16% 3e-04 31.39 148 Q3SIB2.1 RecName: Full=Ribonuclease H; Short=RNase H [Oleidesulfovibrio... Oleidesulfov... NA 207559 45.1 45.1 14% 4e-04 29.91 154 Q30X61.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Chlamydia ab... NA 218497 44.7 44.7 15% 4e-04 24.56 147 Q5L6D8.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Laribacter h... NA 557598 44.3 44.3 12% 5e-04 31.58 149 C1D8V4.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Picosynechoc... NA 32049 44.3 44.3 17% 5e-04 28.80 142 B1XM22.1 RecName: Full=Ribonuclease H; Short=RNase H [Campylobacter... Campylobacte... NA 360105 43.9 43.9 16% 8e-04 29.85 149 A7H185.1 RecName: Full=Ribonuclease H; Short=RNase H [Brucella anthropi... Brucella ant... NA 439375 43.9 43.9 17% 9e-04 30.22 154 A6WWG8.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Marek's dise... NA 10389 45.1 45.1 19% 0.002 29.58 436 Q9E6M6.1 RecName: Full=Ribonuclease H; Short=RNase H [Methylococcus... Methylococcu... NA 243233 43.1 43.1 15% 0.002 27.34 155 Q60AW8.1 RecName: Full=dCTP deaminase, dUMP-forming; AltName:... Hydrogenobac... NA 380749 43.1 43.1 11% 0.002 28.40 177 B4U7Y7.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Chlamydia fe... NA 264202 42.7 42.7 15% 0.002 24.79 147 Q253V7.1 RecName: Full=Enzymatic polyprotein; Includes: RecName:... Cestrum yell... NA 175814 44.7 44.7 22% 0.002 28.48 643 Q7TD08.1 RecName: Full=Ribonuclease H; Short=RNase H [Sulfurovum sp.... Sulfurovum s... NA 387093 42.4 42.4 16% 0.003 31.20 147 A6QCI9.1 RecName: Full=Ribonuclease H; Short=RNase H [Yersinia... Yersinia ent... NA 393305 42.4 42.4 19% 0.003 27.74 154 A1JKB1.1 RecName: Full=Ribonuclease H; Short=RNase H [Sinorhizobium... Sinorhizobiu... NA 366394 42.4 42.4 15% 0.003 28.12 153 A6U6V5.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Human herpes... NA 10315 43.9 43.9 14% 0.003 28.43 369 P89469.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Equine herpe... NA 10333 43.9 43.9 17% 0.003 27.04 326 Q00030.1 RecName: Full=dCTP deaminase, dUMP-forming; AltName:... Aquifex aeol... NA 224324 42.4 42.4 16% 0.003 24.58 180 O67539.1 RecName: Full=Ribonuclease H; Short=RNase H [Brucella ovis ATC... Brucella ovi... NA 444178 41.6 41.6 15% 0.005 30.71 154 A5VP47.1 RecName: Full=Ribonuclease H; Short=RNase H [Chelativorans sp.... Chelativoran... NA 266779 42.0 42.0 12% 0.005 29.70 162 Q11KC5.1 RecName: Full=dCTP deaminase, dUMP-forming; AltName:... Sulfurihydro... NA 436114 42.0 42.0 10% 0.005 28.00 180 B2V937.1 RecName: Full=Ribonuclease H; Short=RNase H [Lachnoclostridium... Lachnoclostr... NA 357809 41.6 41.6 15% 0.005 31.39 158 A9KLJ9.1 RecName: Full=dCTP deaminase; AltName: Full=Deoxycytidine... Pyrobaculum ... NA 384616 41.6 41.6 18% 0.006 24.41 176 A1RVJ1.1 RecName: Full=Ribonuclease H; Short=RNase H [Sinorhizobium... Sinorhizobiu... NA 266834 41.2 41.2 15% 0.008 30.51 153 Q92RG0.1 RecName: Full=Ribonuclease H; Short=RNase H... Paramagnetos... NA 342108 41.2 41.2 14% 0.008 29.73 154 Q2W9A9.1 RecName: Full=Ribonuclease H; Short=RNase H [Yersinia pestis... Yersinia pes... NA 386656 40.8 40.8 19% 0.008 26.45 154 A4TL54.1 RecName: Full=Ribonuclease H; Short=RNase H [Stutzerimonas... Stutzerimona... NA 379731 40.4 40.4 15% 0.011 29.13 151 A4VLR0.1 RecName: Full=Ribonuclease H; Short=RNase H... Nitratidesul... NA 391774 40.0 40.0 11% 0.018 29.79 156 A1VFS4.1 RecName: Full=Ribonuclease H; Short=RNase H... Nitratidesul... NA 883 40.0 40.0 11% 0.019 29.03 156 B8DIU7.1 RecName: Full=Ribonuclease H; Short=RNase H [Saccharopolyspora... Saccharopoly... NA 405948 39.7 39.7 15% 0.021 29.23 155 A4FMU3.1 RecName: Full=Ribonuclease H; Short=RNase H [Syntrophobacter... Syntrophobac... NA 335543 40.0 40.0 15% 0.022 26.72 164 A0LGJ7.1 RecName: Full=Ribonuclease H; Short=RNase H [Pectobacterium... Pectobacteri... NA 561230 39.7 39.7 19% 0.022 26.62 154 C6DC65.1 RecName: Full=Ribonuclease H; Short=RNase H [Tolumonas auensis... Tolumonas au... NA 595494 39.3 39.3 19% 0.029 27.27 154 C4LC60.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Buchnera aph... NA 198804 39.3 39.3 25% 0.033 23.12 159 Q8K921.1 RecName: Full=dCTP deaminase, dUMP-forming; AltName:... Persephonell... NA 123214 39.7 39.7 15% 0.033 23.42 180 C0QRW3.1 RecName: Full=Ribonuclease H; Short=RNase H [Dechloromonas... Dechloromona... NA 159087 38.9 38.9 16% 0.036 31.88 148 Q47FN9.1 RecName: Full=Ribonuclease H; Short=RNase H [Xanthomonas citri... Xanthomonas ... NA 190486 38.9 38.9 13% 0.039 30.77 150 Q8PNH8.1 RecName: Full=Ribonuclease H; Short=RNase H [Dinoroseobacter... Dinoroseobac... NA 398580 38.9 38.9 19% 0.041 28.21 157 A8LLC1.1 RecName: Full=dCTP deaminase; AltName: Full=Deoxycytidine... Pyrobaculum ... NA 178306 38.9 38.9 14% 0.049 25.00 176 Q8ZW23.1 Alignments: >RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Integrase; Short=IN [Caprine arthritis encephalitis virus strain Cork] Sequence ID: P33459.1 Length: 1109 Range 1: 153 to 865 Score:1465 bits(3792), Expect:0.0, Method:Compositional matrix adjust., Identities:713/713(100%), Positives:713/713(100%), Gaps:0/713(0%) Query 1 PITKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKK 60 PITKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKK Sbjct 153 PITKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKK 212 Query 61 KSGKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYRE 120 KSGKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYRE Sbjct 213 KSGKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYRE 272 Query 121 YTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDD 180 YTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDD Sbjct 273 YTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDD 332 Query 181 IYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTL 240 IYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTL Sbjct 333 IYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTL 392 Query 241 PELTKGTITLNKLQKLVGELVWRQSIIGKSIPNILKLMEGDRELQSERKIEEVHVKEWEA 300 PELTKGTITLNKLQKLVGELVWRQSIIGKSIPNILKLMEGDRELQSERKIEEVHVKEWEA Sbjct 393 PELTKGTITLNKLQKLVGELVWRQSIIGKSIPNILKLMEGDRELQSERKIEEVHVKEWEA 452 Query 301 CRKKLEEMEGNYYNKDKDVYGQLAWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIPQQVI 360 CRKKLEEMEGNYYNKDKDVYGQLAWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIPQQVI Sbjct 453 CRKKLEEMEGNYYNKDKDVYGQLAWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIPQQVI 512 Query 361 KAAQKLTQEVIIRTGKIPWILLPGKEEDWRLELQLGNITWMPKFWSCYRGHTRWRKRNII 420 KAAQKLTQEVIIRTGKIPWILLPGKEEDWRLELQLGNITWMPKFWSCYRGHTRWRKRNII Sbjct 513 KAAQKLTQEVIIRTGKIPWILLPGKEEDWRLELQLGNITWMPKFWSCYRGHTRWRKRNII 572 Query 421 EEVVEGPTYYTDGGKKNKVGSLGFIVSTGEKFRKHEEGTNQQLELRAIEEALKQGPQTMN 480 EEVVEGPTYYTDGGKKNKVGSLGFIVSTGEKFRKHEEGTNQQLELRAIEEALKQGPQTMN Sbjct 573 EEVVEGPTYYTDGGKKNKVGSLGFIVSTGEKFRKHEEGTNQQLELRAIEEALKQGPQTMN 632 Query 481 LVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQNEEIDKYI 540 LVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQNEEIDKYI Sbjct 633 LVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQNEEIDKYI 692 Query 541 SEIFLAKEGEGILPKREEDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKS 600 SEIFLAKEGEGILPKREEDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKS Sbjct 693 SEIFLAKEGEGILPKREEDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKS 752 Query 601 SMAAKGVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGE 660 SMAAKGVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGE Sbjct 753 SMAAKGVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGE 812 Query 661 SRKTERGEKGFGSTGMYWIENIPLAEEDHTKWHQDARSLHLEFEIPRTAAEDI 713 SRKTERGEKGFGSTGMYWIENIPLAEEDHTKWHQDARSLHLEFEIPRTAAEDI Sbjct 813 SRKTERGEKGFGSTGMYWIENIPLAEEDHTKWHQDARSLHLEFEIPRTAAEDI 865 >RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; Contains: RecName: Full=Integrase; Short=IN [Ovine lentivirus (strain SA-OMVV)] Sequence ID: P16901.1 Length: 1086 Range 1: 129 to 841 Score:1256 bits(3250), Expect:0.0, Method:Compositional matrix adjust., Identities:595/713(83%), Positives:651/713(91%), Gaps:0/713(0%) Query 1 PITKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKK 60 PIT+VKLKEGC GPH+ QWPLT+EKL+GL EI+DKL +EGK+G+APPHWTCNTPIFCIKK Sbjct 129 PITQVKLKEGCKGPHIAQWPLTQEKLEGLKEIVDKLEKEGKVGRAPPHWTCNTPIFCIKK 188 Query 61 KSGKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYRE 120 KSGKWRMLIDFRELNKQTEDL EAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYR Sbjct 189 KSGKWRMLIDFRELNKQTEDLAEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYRP 248 Query 121 YTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDD 180 YTCFT+LSPNNLGPC RYYWKVLPQGWKLSPSVYQFTMQEIL DWI +HP IQFGIYMDD Sbjct 249 YTCFTMLSPNNLGPCTRYYWKVLPQGWKLSPSVYQFTMQEILRDWIAKHPMIQFGIYMDD 308 Query 181 IYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTL 240 IYIGSDL+I KHREIV++LA+YIAQYGF LPEEKRQ+GYPAKWLGFELHP+ W+FQKHTL Sbjct 309 IYIGSDLDIMKHREIVEELASYIAQYGFMLPEEKRQEGYPAKWLGFELHPEKWRFQKHTL 368 Query 241 PELTKGTITLNKLQKLVGELVWRQSIIGKSIPNILKLMEGDRELQSERKIEEVHVKEWEA 300 PE+ +GTITLNKLQKLVG+LVWRQS+IGKSIPNILKLMEGDR LQSER+IE HVKEWE Sbjct 369 PEIKEGTITLNKLQKLVGDLVWRQSLIGKSIPNILKLMEGDRALQSERRIELRHVKEWEE 428 Query 301 CRKKLEEMEGNYYNKDKDVYGQLAWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIPQQVI 360 CR+KL EMEGNYY+++KDVYGQ+ WGDKAIEYIV+QE+GKPLWVNVVHNIKNLS QQ+I Sbjct 429 CRRKLAEMEGNYYDEEKDVYGQIDWGDKAIEYIVFQERGKPLWVNVVHNIKNLSQSQQII 488 Query 361 KAAQKLTQEVIIRTGKIPWILLPGKEEDWRLELQLGNITWMPKFWSCYRGHTRWRKRNII 420 KAAQKLTQEVIIR GKIPWILLPGKEEDW LELQ+GNITWMP FWSCYRG RW+KRN+I Sbjct 489 KAAQKLTQEVIIRIGKIPWILLPGKEEDWILELQIGNITWMPSFWSCYRGSIRWKKRNVI 548 Query 421 EEVVEGPTYYTDGGKKNKVGSLGFIVSTGEKFRKHEEGTNQQLELRAIEEALKQGPQTMN 480 EVVEGPTYYTDGGKKN GSLGFI STG KFRKHEEGTNQQLELRAIEEA KQGP+ MN Sbjct 549 TEVVEGPTYYTDGGKKNGKGSLGFIASTGVKFRKHEEGTNQQLELRAIEEACKQGPEKMN 608 Query 481 LVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQNEEIDKYI 540 +VTDSRYA+EF+ RNWDEEVIKNPIQARIM++ H K++IGVHWVPGHKGIPQNEEIDKYI Sbjct 609 IVTDSRYAYEFMRRNWDEEVIKNPIQARIMKLVHDKEQIGVHWVPGHKGIPQNEEIDKYI 668 Query 541 SEIFLAKEGEGILPKREEDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKS 600 SEIFLA+EG GILPKR EDAGYDLICP+EV I GQV+ IPI LR+NLK+ QWAM+ TKS Sbjct 669 SEIFLAREGSGILPKRAEDAGYDLICPQEVCIPAGQVRKIPINLRINLKEDQWAMVGTKS 728 Query 601 SMAAKGVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGE 660 S A+KGVF QGGIIDSGYQG IQV++YNSN V+IPQGRKFAQLILM H LE WGE Sbjct 729 SFASKGVFVQGGIIDSGYQGIIQVVVYNSNDKEVIIPQGRKFAQLILMPLIHEDLEAWGE 788 Query 661 SRKTERGEKGFGSTGMYWIENIPLAEEDHTKWHQDARSLHLEFEIPRTAAEDI 713 +R+TERG +GFGSTG YWIENIPLAEEDH+KWHQDA SLHL+F IPRTAAEDI Sbjct 789 TRRTERGNQGFGSTGAYWIENIPLAEEDHSKWHQDAGSLHLDFGIPRTAAEDI 841 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p16; Contains: RecName: Full=Capsid protein p25; Contains: RecName: Full=Nucleocapsid protein p14; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; Contains: RecName: Full=Integrase; Short=IN [Visna lentivirus (strain 1514 / clone LV1-1KS1)] Sequence ID: P23426.2 Length: 1506 Range 1: 549 to 1261 Score:1251 bits(3236), Expect:0.0, Method:Compositional matrix adjust., Identities:586/713(82%), Positives:654/713(91%), Gaps:0/713(0%) Query 1 PITKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKK 60 PIT+V+LKEGC GPH+ QWPLT+EKL+GL EI+D+L +EGK+G+APPHWTCNTPIFCIKK Sbjct 549 PITEVRLKEGCKGPHIAQWPLTQEKLEGLKEIVDRLEKEGKVGRAPPHWTCNTPIFCIKK 608 Query 61 KSGKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYRE 120 KSGKWRMLIDFRELNKQTEDL EAQLGLPHPGGLQ+KKHVTILDIGDAYFTIPLYEPYR+ Sbjct 609 KSGKWRMLIDFRELNKQTEDLAEAQLGLPHPGGLQRKKHVTILDIGDAYFTIPLYEPYRQ 668 Query 121 YTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDD 180 YTCFT+LSPNNLGPC RYYWKVLPQGWKLSPSVYQFTMQ+IL WI++HP IQFGIYMDD Sbjct 669 YTCFTMLSPNNLGPCVRYYWKVLPQGWKLSPSVYQFTMQKILRGWIEEHPMIQFGIYMDD 728 Query 181 IYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTL 240 IYIGSDL +++HR IV +LA+YIAQYGF LPE+KRQ+GYPAKWLGFELHP+ WKFQKHTL Sbjct 729 IYIGSDLGLEEHRGIVNELASYIAQYGFMLPEDKRQEGYPAKWLGFELHPEKWKFQKHTL 788 Query 241 PELTKGTITLNKLQKLVGELVWRQSIIGKSIPNILKLMEGDRELQSERKIEEVHVKEWEA 300 PE+T+G ITLNKLQKLVG+LVWRQS+IGKSIPNILKLMEGDR LQSER IE +HV+EWEA Sbjct 789 PEITEGPITLNKLQKLVGDLVWRQSLIGKSIPNILKLMEGDRALQSERYIESIHVREWEA 848 Query 301 CRKKLEEMEGNYYNKDKDVYGQLAWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIPQQVI 360 CR+KL+EMEGNYY+++KD+YGQL WG+KAIEYIV+QEKGKPLWVNVVH+IKNLS QQ+I Sbjct 849 CRQKLKEMEGNYYDEEKDIYGQLDWGNKAIEYIVFQEKGKPLWVNVVHSIKNLSQAQQII 908 Query 361 KAAQKLTQEVIIRTGKIPWILLPGKEEDWRLELQLGNITWMPKFWSCYRGHTRWRKRNII 420 KAAQKLTQEVIIRTGKIPWILLPG+EEDW LELQ+GNI WMP FWSCY+G RW+KRN+I Sbjct 909 KAAQKLTQEVIIRTGKIPWILLPGREEDWILELQMGNINWMPSFWSCYKGSVRWKKRNVI 968 Query 421 EEVVEGPTYYTDGGKKNKVGSLGFIVSTGEKFRKHEEGTNQQLELRAIEEALKQGPQTMN 480 EVV GPTYYTDGGKKN GSLG+I STGEKFR +EEGTNQQLELRAIEEA KQGP+ MN Sbjct 969 AEVVSGPTYYTDGGKKNGRGSLGYIASTGEKFRIYEEGTNQQLELRAIEEACKQGPEKMN 1028 Query 481 LVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQNEEIDKYI 540 +VTDSRYA+EF+LRNWDEEVI+NPIQARIME+ H K++IGVHWVPGHKGIPQNEEID+YI Sbjct 1029 IVTDSRYAYEFMLRNWDEEVIRNPIQARIMELMHNKEKIGVHWVPGHKGIPQNEEIDRYI 1088 Query 541 SEIFLAKEGEGILPKREEDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKS 600 SEIFLAKEG GIL KR EDAGYDLICP+E++I GQVK I I+L++NLKK QWAMI TKS Sbjct 1089 SEIFLAKEGRGILQKRAEDAGYDLICPQEISIPAGQVKRIAIDLKINLKKDQWAMIGTKS 1148 Query 601 SMAAKGVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGE 660 S A KGVF QGGIIDSGYQG IQV++YNSN VVIPQGRKFAQLILM H +LEPWGE Sbjct 1149 SFANKGVFVQGGIIDSGYQGTIQVVIYNSNNKEVVIPQGRKFAQLILMPLIHEELEPWGE 1208 Query 661 SRKTERGEKGFGSTGMYWIENIPLAEEDHTKWHQDARSLHLEFEIPRTAAEDI 713 +RKTERGE+GFGSTGMYWIENIPLAEE+H KWHQDA SLHLEF IPRTAAEDI Sbjct 1209 TRKTERGEQGFGSTGMYWIENIPLAEEEHNKWHQDAVSLHLEFGIPRTAAEDI 1261 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p16; Contains: RecName: Full=Capsid protein p25; Contains: RecName: Full=Nucleocapsid protein p14; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; Contains: RecName: Full=Integrase; Short=IN [Visna/maedi virus EV1 KV1772] Sequence ID: P35956.2 Length: 1506 Range 1: 549 to 1261 Score:1249 bits(3232), Expect:0.0, Method:Compositional matrix adjust., Identities:585/713(82%), Positives:653/713(91%), Gaps:0/713(0%) Query 1 PITKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKK 60 P T+V+LKEGC GPH+ QWPLT+EKL+GL EI+D+L +EGK+G+APPHWTCNTPIFCIKK Sbjct 549 PSTRVRLKEGCKGPHIAQWPLTQEKLEGLKEIVDRLEKEGKVGRAPPHWTCNTPIFCIKK 608 Query 61 KSGKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYRE 120 KSGKWRMLIDFRELNKQTEDL EAQLGLPHPGGLQ+KKHVTILDIGDAYFTIPLYEPYR+ Sbjct 609 KSGKWRMLIDFRELNKQTEDLAEAQLGLPHPGGLQRKKHVTILDIGDAYFTIPLYEPYRQ 668 Query 121 YTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDD 180 YTCFT+LSPNNLGPC RYYWKVLPQGWKLSP+VYQFTMQ+IL WI++HP IQFGIYMDD Sbjct 669 YTCFTMLSPNNLGPCVRYYWKVLPQGWKLSPAVYQFTMQKILRGWIEEHPMIQFGIYMDD 728 Query 181 IYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTL 240 IYIGSDL +++HR IV +LA+YIAQYGF LPE+KRQ+GYPAKWLGFELHP+ WKFQKHTL Sbjct 729 IYIGSDLGLEEHRGIVNELASYIAQYGFMLPEDKRQEGYPAKWLGFELHPEKWKFQKHTL 788 Query 241 PELTKGTITLNKLQKLVGELVWRQSIIGKSIPNILKLMEGDRELQSERKIEEVHVKEWEA 300 PE+T+G ITLNKLQKLVG+LVWRQS+IGKSIPNILKLMEGDR LQSER IE +HV+EWEA Sbjct 789 PEITEGPITLNKLQKLVGDLVWRQSLIGKSIPNILKLMEGDRALQSERYIESIHVREWEA 848 Query 301 CRKKLEEMEGNYYNKDKDVYGQLAWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIPQQVI 360 CR+KL+EMEGNYY+++KD+YGQL WG+KAIEYIV+QEKGKPLWVNVVH+IKNLS QQ+I Sbjct 849 CRQKLKEMEGNYYDEEKDIYGQLDWGNKAIEYIVFQEKGKPLWVNVVHSIKNLSQAQQII 908 Query 361 KAAQKLTQEVIIRTGKIPWILLPGKEEDWRLELQLGNITWMPKFWSCYRGHTRWRKRNII 420 KAAQKLTQEVIIRTGKIPWILLPG+EEDW LELQ+GNI WMP FWSCY+G RW+KRN+I Sbjct 909 KAAQKLTQEVIIRTGKIPWILLPGREEDWILELQMGNINWMPSFWSCYKGSVRWKKRNVI 968 Query 421 EEVVEGPTYYTDGGKKNKVGSLGFIVSTGEKFRKHEEGTNQQLELRAIEEALKQGPQTMN 480 EVV GPTYYTDGGKKN GSLG+I STGEKFR HEEGTNQQLELRAIEEA KQGP+ MN Sbjct 969 AEVVPGPTYYTDGGKKNGRGSLGYITSTGEKFRIHEEGTNQQLELRAIEEACKQGPEKMN 1028 Query 481 LVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQNEEIDKYI 540 +VTDSRYA+EF+LRNWDEEVI+NPIQARIME+ H K++IGVHWVPGHKGIPQNEEID+YI Sbjct 1029 IVTDSRYAYEFMLRNWDEEVIRNPIQARIMELVHNKEKIGVHWVPGHKGIPQNEEIDRYI 1088 Query 541 SEIFLAKEGEGILPKREEDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKS 600 SEIFLAKEG GIL KR EDAGYDLICP+E++I GQVK I I+L++NLKK QWAMI TKS Sbjct 1089 SEIFLAKEGRGILQKRAEDAGYDLICPQEISIPAGQVKRIAIDLKINLKKDQWAMIGTKS 1148 Query 601 SMAAKGVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGE 660 S A KGVF QGGIIDSGYQG IQV++YNSN VVIPQGRKFAQLILM H +LEPWGE Sbjct 1149 SFANKGVFVQGGIIDSGYQGTIQVVIYNSNNKEVVIPQGRKFAQLILMPLIHEELEPWGE 1208 Query 661 SRKTERGEKGFGSTGMYWIENIPLAEEDHTKWHQDARSLHLEFEIPRTAAEDI 713 +RKTERGE+GFGSTGMYWIENIPLAEE+H KWHQDA SLHLEF IPRTAAEDI Sbjct 1209 TRKTERGEQGFGSTGMYWIENIPLAEEEHNKWHQDAVSLHLEFGIPRTAAEDI 1261 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p16; Contains: RecName: Full=Capsid protein p25; Contains: RecName: Full=Nucleocapsid protein p14; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; Contains: RecName: Full=Integrase; Short=IN [Visna lentivirus (strain 1514 / clone LV1-1KS2)] Sequence ID: P23427.2 Length: 1506 Range 1: 549 to 1261 Score:1248 bits(3230), Expect:0.0, Method:Compositional matrix adjust., Identities:584/713(82%), Positives:653/713(91%), Gaps:0/713(0%) Query 1 PITKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKK 60 P T+V+LKEGC GPH+ QWPLT+EKL+GL EI+D+L +EGK+G+APPHWTCNTPIFCIKK Sbjct 549 PSTRVRLKEGCKGPHIAQWPLTQEKLEGLKEIVDRLEKEGKVGRAPPHWTCNTPIFCIKK 608 Query 61 KSGKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYRE 120 KSGKWRMLIDFRELNKQTEDL EAQLGLPHPGGLQ+KKHVTILDIGDAYFTIPLYEPYR+ Sbjct 609 KSGKWRMLIDFRELNKQTEDLAEAQLGLPHPGGLQRKKHVTILDIGDAYFTIPLYEPYRQ 668 Query 121 YTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDD 180 YTCFT+LSPNNLGPC RYYWKVLPQGWKLSP+VYQFTMQ+IL WI++HP IQFGIYMDD Sbjct 669 YTCFTMLSPNNLGPCVRYYWKVLPQGWKLSPAVYQFTMQKILRGWIEEHPMIQFGIYMDD 728 Query 181 IYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTL 240 IYIGSDL +++HR IV +LA+YIAQYGF LPE+KRQ+GYPAKWLGFELHP+ WKFQKHTL Sbjct 729 IYIGSDLGLEEHRGIVNELASYIAQYGFMLPEDKRQEGYPAKWLGFELHPEKWKFQKHTL 788 Query 241 PELTKGTITLNKLQKLVGELVWRQSIIGKSIPNILKLMEGDRELQSERKIEEVHVKEWEA 300 PE+T+G ITLNKLQKLVG+LVWRQS+IGKSIPNILKLMEGDR LQSER IE +HV+EWEA Sbjct 789 PEITEGPITLNKLQKLVGDLVWRQSLIGKSIPNILKLMEGDRALQSERYIESIHVREWEA 848 Query 301 CRKKLEEMEGNYYNKDKDVYGQLAWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIPQQVI 360 CR+KL+EMEGNYY+++KD+YGQL WG+KAIEYIV+QEKGKPLWVNVVH+IKNLS QQ+I Sbjct 849 CRQKLKEMEGNYYDEEKDIYGQLDWGNKAIEYIVFQEKGKPLWVNVVHSIKNLSQAQQII 908 Query 361 KAAQKLTQEVIIRTGKIPWILLPGKEEDWRLELQLGNITWMPKFWSCYRGHTRWRKRNII 420 KAAQKLTQEVIIRTGKIPWILLPG+EEDW LELQ+GNI WMP FWSCY+G RW+KRN+I Sbjct 909 KAAQKLTQEVIIRTGKIPWILLPGREEDWILELQMGNINWMPSFWSCYKGSVRWKKRNVI 968 Query 421 EEVVEGPTYYTDGGKKNKVGSLGFIVSTGEKFRKHEEGTNQQLELRAIEEALKQGPQTMN 480 EVV GPTYYTDGGKKN GSLG+I STGEKFR HEEGTNQQLELRAIEEA KQGP+ MN Sbjct 969 AEVVPGPTYYTDGGKKNGRGSLGYIASTGEKFRIHEEGTNQQLELRAIEEACKQGPEKMN 1028 Query 481 LVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQNEEIDKYI 540 +VTDSRYA+EF+LRNWDEEVI+NPIQARIME+ H K++IGVHWVPGHKGIPQNEEID+YI Sbjct 1029 IVTDSRYAYEFMLRNWDEEVIRNPIQARIMELVHNKEKIGVHWVPGHKGIPQNEEIDRYI 1088 Query 541 SEIFLAKEGEGILPKREEDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKS 600 SEIFLAKEG GIL KR EDAGYDLICP+E++I GQVK I I+L++NLKK QWAMI TKS Sbjct 1089 SEIFLAKEGRGILQKRAEDAGYDLICPQEISIPAGQVKRIAIDLKINLKKDQWAMIGTKS 1148 Query 601 SMAAKGVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGE 660 S A KGVF QGGIIDSGYQG IQV++YNSN VVIPQGRKFAQLILM H +L+PWGE Sbjct 1149 SFANKGVFVQGGIIDSGYQGTIQVVIYNSNNKEVVIPQGRKFAQLILMPLIHEELKPWGE 1208 Query 661 SRKTERGEKGFGSTGMYWIENIPLAEEDHTKWHQDARSLHLEFEIPRTAAEDI 713 +RKTERGE+GFGSTGMYWIENIPLAEE+H KWHQDA SLHLEF IPRTAAEDI Sbjct 1209 TRKTERGEQGFGSTGMYWIENIPLAEEEHNKWHQDAVSLHLEFGIPRTAAEDI 1261 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p16; Contains: RecName: Full=Capsid protein p25; Contains: RecName: Full=Nucleocapsid protein p14; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; Contains: RecName: Full=Integrase; Short=IN [Visna lentivirus (strain 1514)] Sequence ID: P03370.2 Length: 1506 Range 1: 549 to 1261 Score:1248 bits(3228), Expect:0.0, Method:Compositional matrix adjust., Identities:584/713(82%), Positives:653/713(91%), Gaps:0/713(0%) Query 1 PITKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKK 60 P T+V+LKEGC GPH+ QWPLT+EKL+GL EI+D+L +EGK+G+APPHWTCNTPIFCIKK Sbjct 549 PSTRVRLKEGCKGPHIAQWPLTQEKLEGLKEIVDRLEKEGKVGRAPPHWTCNTPIFCIKK 608 Query 61 KSGKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYRE 120 KSGKWRMLIDFRELNKQTEDL EAQLGLPHPGGLQ+KKHVTILDIGDAYFTIPLYEPYR+ Sbjct 609 KSGKWRMLIDFRELNKQTEDLAEAQLGLPHPGGLQRKKHVTILDIGDAYFTIPLYEPYRQ 668 Query 121 YTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDD 180 YTCFT+LSPNNLGPC RYYWKVLPQGWKLSP+VYQFTMQ+IL WI++HP IQFGIYMDD Sbjct 669 YTCFTMLSPNNLGPCVRYYWKVLPQGWKLSPAVYQFTMQKILRGWIEEHPMIQFGIYMDD 728 Query 181 IYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTL 240 IYIGSDL +++HR IV +LA+YIAQYGF LPE+KRQ+GYPAKWLGFELHP+ WKFQKHTL Sbjct 729 IYIGSDLGLEEHRGIVNELASYIAQYGFMLPEDKRQEGYPAKWLGFELHPEKWKFQKHTL 788 Query 241 PELTKGTITLNKLQKLVGELVWRQSIIGKSIPNILKLMEGDRELQSERKIEEVHVKEWEA 300 PE+T+G ITLNKLQKLVG+LVWRQS+IGKSIPNILKLMEGDR LQSER IE +HV+EWEA Sbjct 789 PEITEGPITLNKLQKLVGDLVWRQSLIGKSIPNILKLMEGDRALQSERYIESIHVREWEA 848 Query 301 CRKKLEEMEGNYYNKDKDVYGQLAWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIPQQVI 360 CR+KL+EMEGNYY+++KD+YGQL WG+KAIEYIV+QEKGKPLWVNVVH+IKNLS QQ+I Sbjct 849 CRQKLKEMEGNYYDEEKDIYGQLDWGNKAIEYIVFQEKGKPLWVNVVHSIKNLSQAQQII 908 Query 361 KAAQKLTQEVIIRTGKIPWILLPGKEEDWRLELQLGNITWMPKFWSCYRGHTRWRKRNII 420 KAAQKLTQEVIIRTGKIPWILLPG+EEDW LELQ+GNI WMP FWSCY+G RW+KRN+I Sbjct 909 KAAQKLTQEVIIRTGKIPWILLPGREEDWILELQMGNINWMPSFWSCYKGSVRWKKRNVI 968 Query 421 EEVVEGPTYYTDGGKKNKVGSLGFIVSTGEKFRKHEEGTNQQLELRAIEEALKQGPQTMN 480 E+V GPTYYTDGGKKN GSLG+I STGEKFR HEEGTNQQLELRAIEEA KQGP+ MN Sbjct 969 AELVPGPTYYTDGGKKNGRGSLGYIASTGEKFRIHEEGTNQQLELRAIEEACKQGPEKMN 1028 Query 481 LVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQNEEIDKYI 540 +VTDSRYA+EF+LRNWDEEVI+NPIQARIME+ H K++IGVHWVPGHKGIPQNEEID+YI Sbjct 1029 IVTDSRYAYEFMLRNWDEEVIRNPIQARIMELVHNKEKIGVHWVPGHKGIPQNEEIDRYI 1088 Query 541 SEIFLAKEGEGILPKREEDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKS 600 SEIFLAKEG GIL KR EDAGYDLICP+E++I GQVK I I+L++NLKK QWAMI TKS Sbjct 1089 SEIFLAKEGRGILQKRAEDAGYDLICPQEISIPAGQVKRIAIDLKINLKKDQWAMIGTKS 1148 Query 601 SMAAKGVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGE 660 S A KGVF QGGIIDSGYQG IQV++YNSN VVIPQGRKFAQLILM H +LEPWGE Sbjct 1149 SFANKGVFVQGGIIDSGYQGTIQVVIYNSNNKEVVIPQGRKFAQLILMPLIHEELEPWGE 1208 Query 661 SRKTERGEKGFGSTGMYWIENIPLAEEDHTKWHQDARSLHLEFEIPRTAAEDI 713 +RKTERGE+GFGSTGMYWIENIPLAEE+H KWHQDA SLHLEF IPRTAAEDI Sbjct 1209 TRKTERGEQGFGSTGMYWIENIPLAEEEHNKWHQDAVSLHLEFGIPRTAAEDI 1261 >RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; Contains: RecName: Full=Integrase; Short=IN [Feline immunodeficiency virus (isolate San Diego)] Sequence ID: P19028.1 Length: 1124 Range 1: 162 to 881 Score:529 bits(1362), Expect:2e-173, Method:Compositional matrix adjust., Identities:316/730(43%), Positives:449/730(61%), Gaps:27/730(3%) Query 1 PITKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKK 60 PI KVK+K+ GP + QWPL+ EK++ LTEI+++L EGK+ +A P+ NTP+F IKK Sbjct 162 PIVKVKMKDPNKGPQIKQWPLSNEKIEALTEIVERLEREGKVKRADPNNPWNTPVFAIKK 221 Query 61 KSGKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYRE 120 KSGKWRMLIDFRELNK TE E QLGLPHP GLQ KK +T+LDIGDAYFT PL Y Sbjct 222 KSGKWRMLIDFRELNKLTEKGAEVQLGLPHPAGLQMKKQITVLDIGDAYFTNPLDPDYAP 281 Query 121 YTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDD 180 YT FTL NN GP +R+ W LPQGW LSP +YQ T+ I++ +I+Q+P++ YMDD Sbjct 282 YTAFTLPRKNNAGPGRRFVWCSLPQGWILSPLIYQSTLDNIIQPFIRQNPQLDIYQYMDD 341 Query 181 IYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTL 240 IYIGS+L K+H+E V++L + +GF PE+K Q+ P KW+G+ELHP TW Q+ L Sbjct 342 IYIGSNLSKKEHKEKVEELRKLLLWWGFETPEDKLQEEPPYKWMGYELHPLTWTIQQKQL 401 Query 241 --PELTKGTITLNKLQKLVGELVW-RQSIIGKSIPNILKLMEGDRELQSERK-IEEVHVK 296 PE TLN+LQKL G++ W Q+I SI ++ + G++ L S R+ EE ++ Sbjct 402 EIPE----KPTLNELQKLAGKINWASQTIPELSIKSLTNMTRGNQNLNSTREWTEEARLE 457 Query 297 EWEACRKKLEEMEGNYYNKDKDVYGQLAW-GDKAIEYIVYQE-KGKPLWVNVVHNIKNLS 354 +A R E+++ YY+ K++Y +L+ G I Y VYQ+ K LW + K + Sbjct 458 VQKAKRAIEEQVQLGYYDPSKELYAKLSLVGPHQISYQVYQKCPEKILWYGKMSRQKKKA 517 Query 355 --IPQQVIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRLELQLGNITWM----PKFWSCY 408 ++A K+ +E IIR GK P +P E W E L N ++ P+ + Sbjct 518 ENTCDIALRACYKIREESIIRIGKEPRYEIPTSREAW--ESNLINSPYLKAPPPEVDYIH 575 Query 409 RGHTRWRKRNIIEE--VVEGPTYYTDGGKK-NKVGSLGFIVSTGEKFRKHEEGTNQQLEL 465 R ++I++ + T+Y DGG+K K + TG+ EG+NQ+ E+ Sbjct 576 AALNIKRALSMIKDPPISGAETWYIDGGRKLGKAAKAAYWTDTGKWQVMELEGSNQKAEI 635 Query 466 RAIEEALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVP 525 +A+ ALK GP+ MN++TDS+Y L + D+ I ++E KK I + WVP Sbjct 636 QALLLALKAGPEEMNIITDSQYMINILSQQPDK---MEGIWQEVLEELEKKTAIFIDWVP 692 Query 526 GHKGIPQNEEIDKYISEIFLAKEGEGILPKREEDAGYDLICPEEVTIEPGQVKCIPIELR 585 GHKGIP NEE+DK + + + EG+GIL KR EDAGYDL+ +E+ + PG+VK IP ++ Sbjct 693 GHKGIPGNEEVDK-LCQTMMIIEGDGILDKRTEDAGYDLLAAKEIHLLPGEVKVIPTGVK 751 Query 586 LNLKKSQWAMIATKSSMAAKGVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQL 645 L L K W +I KSS+ +KG+ GG+ID GY+G+I VIM N +K ++ + + +K AQL Sbjct 752 LMLPKGHWGLIMGKSSIGSKGLDVLGGVIDEGYRGEIGVIMINLSKKSITLLEQQKIAQL 811 Query 646 ILMDKKHGKLEPWGESRKTERGEKGFGSTGMY--WIENIPLAEEDHTKWHQDARSLHLEF 703 I++ KH LE +ERGEKG+GSTG++ W++ I AE +H K+H D + L EF Sbjct 812 IILPHKHEALEQGKVVMDSERGEKGYGSTGVFSSWVDRIEEAETNHEKFHSDPQYLRTEF 871 Query 704 EIPRTAAEDI 713 +P+ AE+I Sbjct 872 NLPKMVAEEI 881 >RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; Contains: RecName: Full=Integrase; Short=IN [Feline immunodeficiency virus (isolate TM2)] Sequence ID: P31822.1 Length: 1124 Range 1: 161 to 881 Score:524 bits(1349), Expect:2e-171, Method:Compositional matrix adjust., Identities:309/731(42%), Positives:445/731(60%), Gaps:28/731(3%) Query 1 PITKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKK 60 PI KV++K+ GP V QWPL+ EK++ LT+I+++L EGK+ +A P+ NTP+F IKK Sbjct 161 PIVKVRMKDPTQGPQVKQWPLSNEKIEALTDIVERLESEGKVKRADPNNPWNTPVFAIKK 220 Query 61 KSGKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYRE 120 KSGKWRMLIDFR LNK T+ E QLGLPHP GLQ KK VT+LDIGDAYFTIPL Y Sbjct 221 KSGKWRMLIDFRVLNKLTDKGAEVQLGLPHPAGLQMKKQVTVLDIGDAYFTIPLDPDYAP 280 Query 121 YTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDD 180 YT FTL NN GP +RY W LPQGW LSP +YQ T+ IL+ +I+Q+ E+ YMDD Sbjct 281 YTAFTLPRKNNAGPGRRYVWCSLPQGWVLSPLIYQSTLNNILQPFIKQNSELDIYQYMDD 340 Query 181 IYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTL 240 IYIGS+L K+H++ V++L + +GF PE+K Q+ P KW+G+ELHP TW Q+ L Sbjct 341 IYIGSNLNKKEHKQKVEELRKLLLWWGFETPEDKLQEEPPYKWMGYELHPLTWSIQQKQL 400 Query 241 --PELTKGTITLNKLQKLVGELVW-RQSIIGKSIPNILKLMEGDRELQSERKIEEVHVKE 297 PE TLN+LQKL G++ W Q+I SI + +M GD++L S R+ +E Sbjct 401 EIPERP----TLNELQKLAGKINWASQTIPDLSIKELTNMMRGDQKLDSIREWTVEAKRE 456 Query 298 WEACRKKLE-EMEGNYYNKDKDVYGQLAW-GDKAIEYIVYQEKGKP-LWVNVVHNIKNLS 354 + ++ +E + + NYY+ ++ +Y +L+ G I Y VYQ+ + LW ++ K + Sbjct 457 VQKAKEAIETQAQLNYYDPNRGLYAKLSLVGPHQICYQVYQKNPEHILWYGKINRQKKKA 516 Query 355 --IPQQVIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRLELQLGNITWM----PKFWSCY 408 ++A K+ +E IIR GK P +P E W E L ++ P+ + Sbjct 517 ENTCDIALRACYKIREESIIRIGKEPVYEIPASREAW--ESNLIRSPYLKAPPPEVEFIH 574 Query 409 RGHTRWRKRNIIEE--VVEGPTYYTDGGKK-NKVGSLGFIVSTGEKFRKHEEGTNQQLEL 465 + R ++I++ ++ T+Y DG +K K + +TG+ EG+NQ+ E+ Sbjct 575 AALSIKRALSMIQDAPIIGAETWYIDGSRKQGKAARAAYWTNTGKWQIMEIEGSNQKAEV 634 Query 466 RAIEEALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVP 525 +A+ ALK G + MN++TDS+Y L + D + + ++E KK I + WVP Sbjct 635 QALLLALKAGSEEMNIITDSQYILNILNQQPD---LMEGLWQEVLEQMEKKIAIFIDWVP 691 Query 526 GHKGIPQNEEIDKYISEIFLAKEGEGILPKREEDAGYDLI-CPEEVTIEPGQVKCIPIEL 584 GHKGIP NEE+DK + + + EGEGIL KR EDAGYDL+ +E PG+V+ +P + Sbjct 692 GHKGIPGNEEVDK-LCQTMMIIEGEGILEKRSEDAGYDLLAAAQETHFLPGEVRIVPTKT 750 Query 585 RLNLKKSQWAMIATKSSMAAKGVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQ 644 R+ L K W +I KSS+ +KGV GG+ID GY+G++ VIM N K ++ I + +K AQ Sbjct 751 RIMLPKGHWGLIMGKSSIGSKGVDVLGGVIDEGYRGELGVIMINLTKKSITILEKQKIAQ 810 Query 645 LILMDKKHGKLEPWGESRKTERGEKGFGSTGMY--WIENIPLAEEDHTKWHQDARSLHLE 702 LI++ +H L+ +ERGEKGFGS G++ W++ I AE +H K+H D + L E Sbjct 811 LIILPCRHEGLQQGEIQMNSERGEKGFGSAGVFSSWVDRIEEAELNHEKFHSDPQYLRTE 870 Query 703 FEIPRTAAEDI 713 F +PR AE+I Sbjct 871 FNLPRIVAEEI 881 >RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; Contains: RecName: Full=Integrase; Short=IN [Feline immunodeficiency virus (isolate Petaluma)] Sequence ID: P16088.1 Length: 1124 Range 1: 162 to 881 Score:522 bits(1344), Expect:1e-170, Method:Compositional matrix adjust., Identities:312/730(43%), Positives:447/730(61%), Gaps:27/730(3%) Query 1 PITKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKK 60 P+ KVK+K+ GP + QWPLT EK++ LTEI+++L +EGK+ +A + NTP+F IKK Sbjct 162 PVVKVKMKDPNKGPQIKQWPLTNEKIEALTEIVERLEKEGKVKRADSNNPWNTPVFAIKK 221 Query 61 KSGKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYRE 120 KSGKWRMLIDFRELNK TE E QLGLPHP GLQ KK VT+LDIGDAYFTIPL Y Sbjct 222 KSGKWRMLIDFRELNKLTEKGAEVQLGLPHPAGLQIKKQVTVLDIGDAYFTIPLDPDYAP 281 Query 121 YTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDD 180 YT FTL NN GP +R+ W LPQGW LSP +YQ T+ I++ +I+Q+P++ YMDD Sbjct 282 YTAFTLPRKNNAGPGRRFVWCSLPQGWILSPLIYQSTLDNIIQPFIRQNPQLDIYQYMDD 341 Query 181 IYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTL 240 IYIGS+L K+H+E V++L + +GF PE+K Q+ P W+G+ELHP TW Q+ L Sbjct 342 IYIGSNLSKKEHKEKVEELRKLLLWWGFETPEDKLQEEPPYTWMGYELHPLTWTIQQKQL 401 Query 241 --PELTKGTITLNKLQKLVGELVW-RQSIIGKSIPNILKLMEGDRELQSERKIEEVHVKE 297 PE TLN+LQKL G++ W Q+I SI + +M G++ L S R+ + E Sbjct 402 DIPEQP----TLNELQKLAGKINWASQAIPDLSIKALTNMMRGNQNLNSTRQWTKEARLE 457 Query 298 WEACRKKLEE-MEGNYYNKDKDVYGQLAW-GDKAIEYIVYQ-EKGKPLWVNVVHNIKNLS 354 + +K +EE ++ YY+ K++Y +L+ G I Y VYQ + K LW + K + Sbjct 458 VQKAKKAIEEQVQLGYYDPSKELYAKLSLVGPHQISYQVYQKDPEKILWYGKMSRQKKKA 517 Query 355 --IPQQVIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRLELQLGNITWM----PKFWSCY 408 ++A K+ +E IIR GK P +P E W E L N ++ P+ + Sbjct 518 ENTCDIALRACYKIREESIIRIGKEPRYEIPTSREAW--ESNLINSPYLKAPPPEVEYIH 575 Query 409 RGHTRWRKRNIIEE--VVEGPTYYTDGGKK-NKVGSLGFIVSTGEKFRKHEEGTNQQLEL 465 R ++I++ + T+Y DGG+K K + TG+ EG+NQ+ E+ Sbjct 576 AALNIKRALSMIKDAPIPGAETWYIDGGRKLGKAAKAAYWTDTGKWRVMDLEGSNQKAEI 635 Query 466 RAIEEALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVP 525 +A+ ALK G + MN++TDS+Y +L+ D + I ++E KK I + WVP Sbjct 636 QALLLALKAGSEEMNIITDSQYVINIILQQPD---MMEGIWQEVLEELEKKTAIFIDWVP 692 Query 526 GHKGIPQNEEIDKYISEIFLAKEGEGILPKREEDAGYDLICPEEVTIEPGQVKCIPIELR 585 GHKGIP NEE+DK + + + EG+GIL KR EDAGYDL+ +E+ + PG+VK IP ++ Sbjct 693 GHKGIPGNEEVDK-LCQTMMIIEGDGILDKRSEDAGYDLLAAKEIHLLPGEVKVIPTGVK 751 Query 586 LNLKKSQWAMIATKSSMAAKGVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQL 645 L L K W +I KSS+ +KG+ GG+ID GY+G+I VIM N ++ ++ + + +K AQL Sbjct 752 LMLPKGYWGLIIGKSSIGSKGLDVLGGVIDEGYRGEIGVIMINVSRKSITLMERQKIAQL 811 Query 646 ILMDKKHGKLEPWGESRKTERGEKGFGSTGMY--WIENIPLAEEDHTKWHQDARSLHLEF 703 I++ KH LE +ERG+ G+GSTG++ W++ I AE +H K+H D + L EF Sbjct 812 IILPCKHEVLEQGKVVMDSERGDNGYGSTGVFSSWVDRIEEAEINHEKFHSDPQYLRTEF 871 Query 704 EIPRTAAEDI 713 +P+ AE+I Sbjct 872 NLPKMVAEEI 881 >RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Integrase; Short=IN [Equine infectious anemia virus (clone CL22)] Sequence ID: P32542.1 Length: 1146 Range 1: 195 to 911 Score:489 bits(1260), Expect:5e-158, Method:Compositional matrix adjust., Identities:288/722(40%), Positives:434/722(60%), Gaps:17/722(2%) Query 4 KVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSG 63 K++LKEG GP +PQWPLT+EKL+G EI+ +L+ EGK+ +A + N+PIF IKK+SG Sbjct 195 KIELKEGTMGPKIPQWPLTKEKLEGAKEIVQRLLSEGKISEASDNNPYNSPIFVIKKRSG 254 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR+L D RELNK + TE GLPHPGGL K KH+T+LDIGDAYFTIPL +R YT Sbjct 255 KWRLLQDLRELNKTVQVGTEISRGLPHPGGLIKCKHMTVLDIGDAYFTIPLDPEFRPYTA 314 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S N+ P KRY W LPQG+ LSP +YQ T+QEIL+ + +++PE+Q YMDD+++ Sbjct 315 FTIPSINHQEPDKRYVWNCLPQGFVLSPYIYQKTLQEILQPFRERYPEVQLYQYMDDLFV 374 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GS+ K+H+E++ +L + + GF P++K Q+ P WLG++L P+ WK QK L ++ Sbjct 375 GSNGSKKQHKELIIELRAILLEKGFETPDDKLQEVPPYSWLGYQLCPENWKVQKMQL-DM 433 Query 244 TKGTITLNKLQKLVGELVWRQS-IIGKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K TLN +QKL+G + W S + G ++ +I +G EL + E KE E Sbjct 434 VKNP-TLNDVQKLMGNITWMSSGVPGLTVKHIAATTKGCLELNQKVIWTEEAQKELEENN 492 Query 303 KKLEEMEG-NYYNKDKDVYGQLAWG-DKAIEYIVYQEKGKPLWVN--VVHNIKNLSIPQQ 358 +K++ +G YYN ++++ ++ + Y++ Q +G LW ++ K S + Sbjct 493 EKIKNAQGLQYYNPEEEMLCEVEITKNYEATYVIKQSQGI-LWAGKKIMKANKGWSTVKN 551 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRLELQLG-NITWMPKFWSCYR-GHTRWRK 416 ++ Q + E I R GK P +P +E E+Q G +W+P+ ++ H WR Sbjct 552 LMLLLQHVATESITRVGKCPTFKVPFTKEQVMWEMQKGWYYSWLPEIVYTHQVVHDDWRM 611 Query 417 RNIIEEVVEGPTYYTDGGKKNKVGSLGFIVSTGE-KFRKHEEGTNQQLELRAIEEALKQG 475 + ++EE G T YTDGGK+N G ++ S G K ++ T+Q E AI+ AL+ Sbjct 612 K-LVEEPTSGITIYTDGGKQNGEGIAAYVTSNGRTKQKRLGPVTHQVAERMAIQMALEDT 670 Query 476 -PQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQN- 533 + +N+VTDS Y ++ + E ++P I I +K+ + WVPGHKGI N Sbjct 671 RDKQVNIVTDSYYCWKNITEGLGLEGPQSPWWPIIQNI-REKEIVYFAWVPGHKGICGNQ 729 Query 534 --EEIDKYISEIFLAKEGEGILPKREEDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKS 591 +E K EI LA +G I KR+EDAG+DL P ++ I K IP ++++ + + Sbjct 730 LADEAAKIKEEIMLAYQGTQIKEKRDEDAGFDLCVPYDIMIPVSDTKIIPTDVKIQVPPN 789 Query 592 QWAMIATKSSMAAKGVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKK 651 + + KSSMA +G+ GGIID GY G+IQVI N K + + +G+KFAQLI++ Sbjct 790 SFGWVTGKSSMAKQGLLINGGIIDEGYTGEIQVICTNIGKSNIKLIEGQKFAQLIILQHH 849 Query 652 HGKLEPWGESRKTERGEKGFGSTGMYWIENIPLAEEDHTKWHQDARSLHLEFEIPRTAAE 711 +PW E++ ++RG+KGFGSTG++W+ENI A+++H WH + L ++IP T A+ Sbjct 850 SNSRQPWDENKISQRGDKGFGSTGVFWVENIQEAQDEHENWHTSPKILARNYKIPLTVAK 909 Query 712 DI 713 I Sbjct 910 QI 911 >RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Integrase; Short=IN [Equine infectious anemia virus (CLONE 1369)] Sequence ID: P11204.1 Length: 1146 Range 1: 195 to 911 Score:489 bits(1260), Expect:5e-158, Method:Compositional matrix adjust., Identities:288/722(40%), Positives:434/722(60%), Gaps:17/722(2%) Query 4 KVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSG 63 K++LKEG GP +PQWPLT+EKL+G EI+ +L+ EGK+ +A + N+PIF IKK+SG Sbjct 195 KIELKEGTMGPKIPQWPLTKEKLEGAKEIVQRLLSEGKISEASDNNPYNSPIFVIKKRSG 254 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR+L D RELNK + TE GLPHPGGL K KH+T+LDIGDAYFTIPL +R YT Sbjct 255 KWRLLQDLRELNKTVQVGTEISRGLPHPGGLIKCKHMTVLDIGDAYFTIPLDPEFRPYTA 314 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S N+ P KRY W LPQG+ LSP +YQ T+QEIL+ + +++PE+Q YMDD+++ Sbjct 315 FTIPSINHQEPDKRYVWNCLPQGFVLSPYIYQKTLQEILQPFRERYPEVQLYQYMDDLFV 374 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GS+ K+H+E++ +L + + GF P++K Q+ P WLG++L P+ WK QK L ++ Sbjct 375 GSNGSKKQHKELIIELRAILLEEGFETPDDKLQEVPPYSWLGYQLCPENWKVQKMQL-DM 433 Query 244 TKGTITLNKLQKLVGELVWRQS-IIGKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K TLN +QKL+G + W S + G ++ +I +G EL + E KE E Sbjct 434 VKNP-TLNDVQKLMGNITWMSSGVPGLTVKHIAATTKGCLELNQKVIWTEEAQKELEENN 492 Query 303 KKLEEMEG-NYYNKDKDVYGQLAWG-DKAIEYIVYQEKGKPLWVN--VVHNIKNLSIPQQ 358 +K++ +G YYN ++++ ++ + Y++ Q +G LW ++ K S + Sbjct 493 EKIKNAQGLQYYNPEEEMLCEVEITKNYEATYVIKQSQGI-LWAGKKIMKANKGWSTVKN 551 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRLELQLG-NITWMPKFWSCYR-GHTRWRK 416 ++ Q + E I R GK P +P +E E+Q G +W+P+ ++ H WR Sbjct 552 LMLLLQHVATESITRVGKCPTFKVPFTKEQVMWEMQKGWYYSWLPEIVYTHQVVHDDWRM 611 Query 417 RNIIEEVVEGPTYYTDGGKKNKVGSLGFIVSTGE-KFRKHEEGTNQQLELRAIEEALKQG 475 + ++EE G T YTDGGK+N G ++ S G K ++ T+Q E AI+ AL+ Sbjct 612 K-LVEEPTSGITIYTDGGKQNGEGIAAYVTSNGRTKQKRLGPVTHQVAERMAIQMALEDT 670 Query 476 -PQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQN- 533 + +N+VTDS Y ++ + E ++P I I +K+ + WVPGHKGI N Sbjct 671 RDKQVNIVTDSYYCWKNITEGLGLEGPQSPWWPIIQNI-REKEIVYFAWVPGHKGICGNQ 729 Query 534 --EEIDKYISEIFLAKEGEGILPKREEDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKS 591 +E K EI LA +G I KR+EDAG+DL P ++ I K IP ++++ + + Sbjct 730 LADEAAKIKEEIMLAYQGTQIKEKRDEDAGFDLCVPYDIMIPVSDTKIIPTDVKIQVPPN 789 Query 592 QWAMIATKSSMAAKGVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKK 651 + + KSSMA +G+ GGIID GY G+IQVI N K + + +G+KFAQLI++ Sbjct 790 SFGWVTGKSSMAKQGLLINGGIIDEGYTGEIQVICTNIGKSNIKLIEGQKFAQLIILQHH 849 Query 652 HGKLEPWGESRKTERGEKGFGSTGMYWIENIPLAEEDHTKWHQDARSLHLEFEIPRTAAE 711 +PW E++ ++RG+KGFGSTG++W+ENI A+++H WH + L ++IP T A+ Sbjct 850 SNSRQPWDENKISQRGDKGFGSTGVFWVENIQEAQDEHENWHTSPKILARNYKIPLTVAK 909 Query 712 DI 713 I Sbjct 910 QI 911 >RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Integrase; Short=IN [Equine infectious anemia virus (ISOLATE WYOMING)] Sequence ID: P03371.1 Length: 1145 Range 1: 195 to 910 Score:489 bits(1259), Expect:6e-158, Method:Compositional matrix adjust., Identities:291/722(40%), Positives:434/722(60%), Gaps:18/722(2%) Query 4 KVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSG 63 K++LKEG GP +PQWPLT+EKL+G E + +L+ EGK+ +A + N+PIF IKK+SG Sbjct 195 KIELKEGTMGPKIPQWPLTKEKLEGAKETVQRLLSEGKISEASDNNPYNSPIFVIKKRSG 254 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR+L D RELNK + TE GLPHPGGL K KH+T+LDIGDAYFTIPL +R YT Sbjct 255 KWRLLQDLRELNKTVQVGTEISRGLPHPGGLIKCKHMTVLDIGDAYFTIPLDPEFRPYTA 314 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S N+ P KRY WK LPQG+ LSP +YQ T+QEIL+ + +++PE+Q YMDD+++ Sbjct 315 FTIPSINHQEPDKRYVWKCLPQGFVLSPYIYQKTLQEILQPFRERYPEVQLYQYMDDLFV 374 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GS+ K+H+E++ +L I Q GF P++K Q+ P WLG++L P+ WK QK L ++ Sbjct 375 GSNGSKKQHKELIIEL-RAILQKGFETPDDKLQEVPPYSWLGYQLCPENWKVQKMQL-DM 432 Query 244 TKGTITLNKLQKLVGELVWRQS-IIGKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K TLN +QKL+G + W S + G ++ +I +G EL + E KE E Sbjct 433 VKNP-TLNDVQKLMGNITWMSSGVPGLTVKHIAATTKGCLELNQKVIWTEEAQKELEENN 491 Query 303 KKLEEMEG-NYYNKDKDVYGQLAWG-DKAIEYIVYQEKGKPLWVN--VVHNIKNLSIPQQ 358 +K++ +G YYN ++++ ++ + Y++ Q +G LW ++ K S + Sbjct 492 EKIKNAQGLQYYNPEEEMLCEVEITKNYEATYVIKQSQGI-LWAGKKIMKANKGWSTVKN 550 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRLELQLG-NITWMPKFWSCYR-GHTRWRK 416 ++ Q + E I R GK P +P +E E+Q G +W+P+ ++ H WR Sbjct 551 LMLLLQHVATESITRVGKCPTFKVPFTKEQVMWEMQKGWYYSWLPEIVYTHQVVHDDWRM 610 Query 417 RNIIEEVVEGPTYYTDGGKKNKVGSLGFIVSTGE-KFRKHEEGTNQQLELRAIEEALKQG 475 + ++EE G T YTDGGK+N G ++ S G K ++ T+Q E AI+ AL+ Sbjct 611 K-LVEEPTSGITIYTDGGKQNGEGIAAYVTSNGRTKQKRLGPVTHQVAERMAIQMALEDT 669 Query 476 -PQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQN- 533 + +N+VTDS Y ++ + E +NP I I +K+ + WVPGHKGI N Sbjct 670 RDKQVNIVTDSYYCWKNITEGLGLEGPQNPWWPIIQNI-REKEIVYFAWVPGHKGIYGNQ 728 Query 534 --EEIDKYISEIFLAKEGEGILPKREEDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKS 591 +E K EI LA +G I KR+EDAG+DL P ++ I K IP ++++ + + Sbjct 729 LADEAAKIKEEIMLAYQGTQIKEKRDEDAGFDLCVPYDIMIPVSDTKIIPTDVKIQVPPN 788 Query 592 QWAMIATKSSMAAKGVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKK 651 + + KSSMA +G+ GGIID GY G+IQVI N K + + +G+KFAQLI++ Sbjct 789 SFGWVTGKSSMAKQGLLINGGIIDEGYTGEIQVICTNIGKSNIKLIEGQKFAQLIILQHH 848 Query 652 HGKLEPWGESRKTERGEKGFGSTGMYWIENIPLAEEDHTKWHQDARSLHLEFEIPRTAAE 711 +PW E++ ++RG+KGFGSTG++W+ENI A+++H WH + L ++IP T A+ Sbjct 849 SNSRQPWDENKISQRGDKGFGSTGVFWVENIQEAQDEHENWHTSPKILARNYKIPLTVAK 908 Query 712 DI 713 I Sbjct 909 QI 910 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [SIVcpz EK505] Sequence ID: Q1A249.3 Length: 1448 Range 1: 606 to 1149 Score:380 bits(977), Expect:5e-115, Method:Compositional matrix adjust., Identities:233/549(42%), Positives:327/549(59%), Gaps:17/549(3%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K LTEI ++ +EGK+ + P NTPIF IKKK S Sbjct 606 VKLKPGMDGPRVKQWPLTEEKIKALTEICTEMEKEGKISRIGPENPYNTPIFAIKKKDST 665 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL+KKK VT+LD+GDAYF+ PL E +R+YT Sbjct 666 KWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSCPLDENFRKYTA 725 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q TM +ILE + + +PE+ YMDD+Y+ Sbjct 726 FTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQSTMTKILEPFRKNNPELVIYQYMDDLYV 785 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HRE V+ L +++ +GFT P++K QK P W+G+ELHP W Q LPE Sbjct 786 GSDLEITQHREAVERLRSHLLTWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQTIQLPE- 844 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K T T+N +Q+LVG+L W I G + + KL+ G + L + E R Sbjct 845 -KDTWTVNDIQQLVGKLNWASQIYPGIKVKQLCKLIRGAKALTEVVTLTREAELELAENR 903 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YYN DK++ ++ G Y +YQ+ K L +++ +Q Sbjct 904 EILKEPVHGAYYNPDKELIAEIQKQGQGQWTYQIYQDLHKNLKTGKYAKMRSTHTNDIRQ 963 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + + QK+ E I+ GK P LP ++E W + TW+P +F + W Sbjct 964 LTEVVQKVALESIVIWGKTPKFRLPVQKEVWETWWTEYWQATWIPDWEFVNTPPLVKLWY 1023 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E + TYY DG ++ K+G GF+ G +K E TNQQ EL+A+ AL Sbjct 1024 QLE-TEPISGAETYYVDGAANRETKLGKAGFVTDRGRQKVTSISETTNQQAELQAVLMAL 1082 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + Q +N+VTDS+Y + D+ ++ + +I+E KK+RI + WVP HKGI Sbjct 1083 QDAGQEVNIVTDSQYVLGIIHSQPDKS--ESELVNQIIEELIKKERIYLSWVPAHKGIGG 1140 Query 533 NEEIDKYIS 541 NE+IDK +S Sbjct 1141 NEQIDKLVS 1149 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (NDK ISOLATE)] Sequence ID: P18802.3 Length: 1432 Range 1: 594 to 1159 Score:379 bits(973), Expect:2e-114, Method:Compositional matrix adjust., Identities:237/575(41%), Positives:343/575(59%), Gaps:26/575(4%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K LTEI ++ +EGK+ + P NTPIF IKKK S Sbjct 594 VKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISRIGPENPYNTPIFAIKKKDST 653 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL+KKK VT+LD+GDAYF++PL E +R+YT Sbjct 654 KWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTA 713 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +ILE + +Q+PEI YMDD+Y+ Sbjct 714 FTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPEIVIYQYMDDLYV 773 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR +++L ++ ++GFT P++K QK P W+G+ELHP W Q LPE Sbjct 774 GSDLEIGQHRTKIEELREHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPINLPE- 832 Query 244 TKGTITLNKLQKLVGELVWRQSI-IGKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I G + + KL+ G + L + E E R Sbjct 833 -KESWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGTKALTEVVPLTEEAELELAENR 891 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YY+ KD+ +L GD Y +YQE K L + +Q Sbjct 892 EILKEPVHGVYYDPSKDLIAELQKQGDGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQ 951 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + +A QK+ E I+ GK P LP ++E W ++ TW+P +F + W Sbjct 952 LTEAVQKIATESIVIWGKTPKFKLPIQKETWETWWIEYWQATWIPEWEFVNTPPLVKLWY 1011 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E ++ T+Y DG ++ K+G G++ G +K + TNQ+ EL+AI AL Sbjct 1012 QLE-KEPIIGAETFYVDGAANRETKLGKAGYVTDRGRQKVVPFTDTTNQKTELQAINLAL 1070 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + D+ ++ + ++I+E KK+++ + WVP HKGI Sbjct 1071 QDSGLEVNIVTDSQYALGIIQAQPDKS--ESELVSQIIEQLIKKEKVYLAWVPAHKGIGG 1128 Query 533 NEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 NE++DK +S+ +FL +GI +EE Y Sbjct 1129 NEQVDKLVSQGIRKVLFL----DGIDKAQEEHEKY 1159 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr170Gag-Pol; Contains: RecName: Full=Matrix protein p16; Short=MA; Contains: RecName: Full=Capsid protein p26; Short=CA; Contains: RecName: Full=Transframe peptide; AltName: Full=p11; Contains: RecName: Full=Protease; AltName: Full=P119; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; AltName: Full=P72; Contains: RecName: Full=Integrase; Short=IN [Jembrana disease virus] Sequence ID: Q82851.1 Length: 1432 Range 1: 553 to 1190 Score:379 bits(972), Expect:2e-114, Method:Compositional matrix adjust., Identities:247/706(35%), Positives:383/706(54%), Gaps:73/706(10%) Query 13 GPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSG-KWRMLIDF 71 GP VPQWPLT EK K L EI+++L+++GK+ + P NTP+F IKKK G KWRML+DF Sbjct 553 GPRVPQWPLTLEKYKALKEIVEELLKDGKISRTPWDNPFNTPVFVIKKKGGSKWRMLMDF 612 Query 72 RELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNN 131 R LNK T E Q+GLP+P G+Q+ +H+T +DI DAYFTIPL E +R+YT F+++ N Sbjct 613 RALNKVTNKGQEFQIGLPYPPGIQQCEHITAIDIKDAYFTIPLDENFRQYTAFSVVPVNR 672 Query 132 LGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKK 191 GP +RY+W VLPQGW SP++YQ T QEI+ + + P+I YMDD+ IGSD Sbjct 673 EGPLERYHWNVLPQGWVCSPAIYQTTTQEIIAEIKDRFPDIVLYQYMDDLLIGSDR--PD 730 Query 192 HREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPELTKGTITLN 251 H+ +V ++ + YGF PEEK Q+ +WLG+EL P+ W+FQ + K +T+N Sbjct 731 HKRVVSEIREELGAYGFKTPEEKIQEEQ-VQWLGYELTPKRWRFQPRQIK--IKKVVTVN 787 Query 252 KLQKLVGELVWRQSIIGKSIPNILKLMEGDRELQSERKIEEVHVKEWEACRKKLEEMEGN 311 +LQ+++G VW Q + + + L++G +L+ + K+ E ++ E K+L++ E Sbjct 788 ELQQMIGNCVWVQPEVKIPLSPLSDLLKGKTDLKDKIKLTEEAIQCLETVNKRLKDPEWK 847 Query 312 YYNKD-KDVYGQLAWGDKAIEYIVYQEKGKPLWVNVVH-NIKNLSIPQQVIKAAQKLTQE 369 K+ ++ ++ + + Y + Q+ G P+W V + + + ++++ +KL++ Sbjct 848 ERIKEGTELVVKIQLIPEGVVYDLLQD-GNPIWGGVKGWDYNHANKIKKMLSIMKKLSRI 906 Query 370 VIIRTGKIPWILLPGKEEDWRLELQ-LGNITWMPKFWSCYRGHTRWRKRNIIEEVVEG-P 427 V+I TG+ L+PG EDW LQ + +T +P+ Y+ RW ++ V+E P Sbjct 907 VMIMTGREVSFLIPGDSEDWESALQRINTLTEIPEV-KFYKHACRW--TSVCGPVIERYP 963 Query 428 TYYTDGGKKNKVGSLGFIVSTGEKFRKHEEGTNQQLELRAIEEALKQGPQTMNLVTDSRY 487 TYYTDGGKK + + G+ R+ GTNQQ EL+A+ AL+ GP MN++TDSRY Sbjct 964 TYYTDGGKKGSKAAAAYW-REGKIRREVFPGTNQQAELKAVLMALQDGPAKMNIITDSRY 1022 Query 488 AFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQNEEIDKYISEIFLAK 547 AFE +R E + + I E +K+ +GV WVPGHKGI N E+D+ + + Sbjct 1023 AFEG-MREEPETWGREGLWKEIGEELRRKEYVGVSWVPGHKGIGGNTEVDQEVQKAL--- 1078 Query 548 EGEGILPKREEDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAKGV 607 + P+E+ +E G+ K + + W + +G+ Sbjct 1079 -----------QGPITVSLPQEILLEAGETKLVKTGIF-------WEGLRPCKLRPEEGL 1120 Query 608 FTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERG 667 +G +ID ++Q+ + N+ V I QG+ Sbjct 1121 KLKGSLIDE----ELQLEITNTQNSRVGIRQGQ--------------------------- 1149 Query 668 EKGFGSTGMYWIENIPLAEEDHTKWHQDARSLHLEFEIPRTAAEDI 713 + G +IE IP A E+H KWH A L EF++PR A +I Sbjct 1150 -----TIGTCFIEAIPQAIEEHEKWHTTAEILAREFQLPRRVAREI 1190 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (OYI ISOLATE)] Sequence ID: P20892.3 Length: 1434 Range 1: 596 to 1161 Score:376 bits(966), Expect:2e-113, Method:Compositional matrix adjust., Identities:236/575(41%), Positives:343/575(59%), Gaps:26/575(4%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K L EI ++ +EGK+ K P NTP+F IKKK S Sbjct 596 VKLKPGMDGPKVKQWPLTEEKIKVLIEICTEMEKEGKISKVGPENPYNTPVFAIKKKDST 655 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL+KKK VT+LD+GDAYF++PL + +R+YT Sbjct 656 KWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTA 715 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +ILE + +Q+P+I YMDD+Y+ Sbjct 716 FTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYV 775 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR +++L ++ ++GFT P++K QK P W+G+ELHP W Q LPE Sbjct 776 GSDLEIGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIMLPE- 834 Query 244 TKGTITLNKLQKLVGELVWRQSI-IGKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I G + N+ KL+ G + L + E E R Sbjct 835 -KDSWTVNDIQKLVGKLNWASQIYAGIKVKNLCKLLRGTKALTEVIPLTEEAELELAENR 893 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YY+ KD+ +L G Y +YQE K L ++ +Q Sbjct 894 EILKEPVHGVYYDPSKDLVAELQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQ 953 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + +A QK+TQE I+ GK P LP ++E W + TW+P +F + W Sbjct 954 LTEAVQKITQESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWY 1013 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + + +V T+Y DG ++ K+G G++ G +K + TNQ+ EL+AI AL Sbjct 1014 QLE-KDPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLAL 1072 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + D+ ++ + ++I+E KK+++ + WVP HKGI Sbjct 1073 QDSGLEVNIVTDSQYALGIIQAQPDKS--ESELVSQIIEQLIKKEKVYLAWVPAHKGIGG 1130 Query 533 NEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 NE++DK +S +FL +GI +EE Y Sbjct 1131 NEQVDKLVSAGIRKVLFL----DGIDKAQEEHEKY 1161 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (MAL ISOLATE)] Sequence ID: P04588.3 Length: 1440 Range 1: 602 to 1167 Score:376 bits(965), Expect:2e-113, Method:Compositional matrix adjust., Identities:237/575(41%), Positives:339/575(58%), Gaps:26/575(4%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K LTEI + +EGK+ K P NTP+F IKKK S Sbjct 602 VKLKPGMDGPRVKQWPLTEEKIKALTEICKDMEKEGKILKIGPENPYNTPVFAIKKKDST 661 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L++FRELNK+T+D E QLG+PHP GL+KKK VT+LD+GDAYF++PL E +R+YT Sbjct 662 KWRKLVNFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTA 721 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +ILE + ++PEI YMDD+Y+ Sbjct 722 FTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRTKNPEIVIYQYMDDLYV 781 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR +++L ++ ++GFT P++K QK P W+G+ELHP W Q LP+ Sbjct 782 GSDLEIGQHRTKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPD- 840 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I G + + KL+ G + L + E R Sbjct 841 -KESWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGAKALTDIVPLTAEAELELAENR 899 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YY+ KD+ ++ G Y +YQE+ K L IK+ +Q Sbjct 900 EILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEQYKNLKTGKYARIKSAHTNDVKQ 959 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + +A QK+ QE I+ GK P LP ++E W + TW+P +F + W Sbjct 960 LTEAVQKIAQESIVIWGKTPKFRLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWY 1019 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E +V T+Y DG ++ K G G++ G +K E TNQ+ EL+AI AL Sbjct 1020 QLE-TEPIVGAETFYVDGAANRETKKGKAGYVTDRGRQKVVSLTETTNQKTELQAIHLAL 1078 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + D+ ++ I +I+E +KD++ + WVP HKGI Sbjct 1079 QDSGSEVNIVTDSQYALGIIQAQPDKS--ESEIVNQIIEQLIQKDKVYLSWVPAHKGIGG 1136 Query 533 NEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 NE++DK +S +FL +GI +EE Y Sbjct 1137 NEQVDKLVSSGIRKVLFL----DGIDKAQEEHEKY 1167 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:F2_MP257C] Sequence ID: Q9QBZ1.3 Length: 1434 Range 1: 596 to 1139 Score:375 bits(963), Expect:4e-113, Method:Compositional matrix adjust., Identities:226/549(41%), Positives:333/549(60%), Gaps:17/549(3%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K LTEI ++ +EGK+ K P NTP+F IKKK S Sbjct 596 VKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPVFAIKKKDST 655 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL+KK+ VT+LD+GDAYF++PL + +R+YT Sbjct 656 KWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKRSVTVLDVGDAYFSVPLDKEFRKYTA 715 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +ILE + +++PEI YMDD+Y+ Sbjct 716 FTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMIKILEPFRKENPEIVIYQYMDDLYV 775 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR +++L ++ ++GFT P++K QK P W+G+ELHP W Q LP+ Sbjct 776 GSDLEIGQHRAKIEELREHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQAIQLPD- 834 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I G + ++ KL+ G + L + E R Sbjct 835 -KSSWTVNDIQKLVGKLNWASQIYPGIRVKHLCKLLRGTKALTDVVPLTAEAELELAENR 893 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YY+ KD+ ++ G Y +YQE K L K+ +Q Sbjct 894 EILKEPVHGVYYDPSKDLIAEIQKQGHDQWTYQIYQEPHKNLKTGKYARRKSAHTNDVKQ 953 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + + QK+ E I+ GK+P LP ++E W + + TW+P +F + W Sbjct 954 LTEVVQKVATEGIVIWGKVPKFRLPIQKETWEIWWTEYWQATWIPEWEFVNTPPLVKLWY 1013 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E ++ T+Y DG ++ K+G G+I G +K E TNQ+ EL+AI+ AL Sbjct 1014 QLE-TEPIIGAETFYVDGAANRETKLGKAGYITDRGRQKVVSLTETTNQKTELQAIQLAL 1072 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + + D+ ++ I +I+E +K+R+ + WVP HKGI Sbjct 1073 QDSGSEVNIVTDSQYALGIIQAHPDKS--ESEIVNQIIEQLIQKERVYLSWVPAHKGIGG 1130 Query 533 NEEIDKYIS 541 NE++DK +S Sbjct 1131 NEQVDKLVS 1139 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:B_89.6] Sequence ID: Q73368.3 Length: 1435 Range 1: 597 to 1162 Score:374 bits(960), Expect:1e-112, Method:Compositional matrix adjust., Identities:236/575(41%), Positives:337/575(58%), Gaps:26/575(4%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K L EI ++ +EGK+ K P NTP+F IKKK S Sbjct 597 VKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDST 656 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL+KKK VT+LD+GDAYF++PL E +R+YT Sbjct 657 KWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTA 716 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +ILE + +Q+P+I YMDD+Y+ Sbjct 717 FTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYV 776 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR ++DL ++ ++GFT P++K QK P W+G+ELHP W Q LPE Sbjct 777 GSDLEIGQHRAKIEDLRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPE- 835 Query 244 TKGTITLNKLQKLVGELVWRQSI-IGKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I G + + KL+ G + L + E E R Sbjct 836 -KDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGTKALTEVVPLTEEAELELAENR 894 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YY+ KD+ +L G Y +YQE K L ++ +Q Sbjct 895 EILKEPVHGVYYDPTKDLIAELQKQGQGQWTYQIYQEPYKNLKTGKYARMRGAHTNDVKQ 954 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + +A QK+ E I+ GK P LP ++E W TW+P +F + W Sbjct 955 LTEAVQKIATESIVIWGKTPKFKLPIQKETWEAWWTDYWQATWIPEWEFVNTPPLVKLWY 1014 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E +V T+Y DG + K G G++ G +K + TNQ+ EL+AI AL Sbjct 1015 QLE-KEPIVGAETFYVDGAANRDTKSGKAGYVTDRGRQKVVSLADTTNQKTELQAIHLAL 1073 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + D+ ++ + ++I+E KK+++ + WVP HKGI Sbjct 1074 QDSGLEVNIVTDSQYALGIIQAQPDKS--ESELVSQIIEQLIKKEKVYLAWVPAHKGIGG 1131 Query 533 NEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 NE++DK +S +FL +GI +EE Y Sbjct 1132 NEQVDKLVSAGIRKVLFL----DGIDKAQEEHEKY 1162 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (Z2/CDC-Z34 ISOLATE)] Sequence ID: P12499.3 Length: 1436 Range 1: 598 to 1163 Score:373 bits(957), Expect:3e-112, Method:Compositional matrix adjust., Identities:233/575(41%), Positives:343/575(59%), Gaps:26/575(4%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K LTEI ++ +EGK+ + P NTPIF IKKK S Sbjct 598 VKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISRVGPENPYNTPIFAIKKKDST 657 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL+KKK VT+LD+GDAYF++PL + +R+YT Sbjct 658 KWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTA 717 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +ILE + +Q+PEI YMDD+Y+ Sbjct 718 FTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPEIVIYQYMDDLYV 777 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR +++L ++ ++GFT P++K QK P W+G+ELHP W Q LPE Sbjct 778 GSDLEIGQHRTKIEELREHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQSIKLPE- 836 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I G + + KL+ G + L + E E R Sbjct 837 -KESWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENR 895 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YY+ KD+ ++ G Y +YQE K L ++ +Q Sbjct 896 EILKEPVHGVYYDPSKDLIAEIQKQGHGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQ 955 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + + QK++ E I+ GK P LP ++E W ++ TW+P +F + W Sbjct 956 LAEVVQKISTESIVIWGKTPKFRLPIQKETWETWWVEYWQATWIPEWEFVNTPPLVKLWY 1015 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E ++ T+Y DG ++ K+G G++ G +K + TNQ+ EL+AI AL Sbjct 1016 QLE-KEPIIGAETFYVDGAANRETKLGKAGYVTDRGRQKVVPFTDTTNQKTELQAINLAL 1074 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + D+ ++ + ++I+E KK+++ + WVP HKGI Sbjct 1075 QDSGLEVNIVTDSQYALGIIQAQPDKS--ESELVSQIIEQLIKKEKVYLAWVPAHKGIGG 1132 Query 533 NEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 NE++DK +S+ +FL +GI +EE Y Sbjct 1133 NEQVDKLVSQGIRKVLFL----DGIDKAQEEHEKY 1163 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (isolate YU2)] Sequence ID: P35963.3 Length: 1435 Range 1: 597 to 1162 Score:372 bits(955), Expect:5e-112, Method:Compositional matrix adjust., Identities:232/575(40%), Positives:339/575(58%), Gaps:26/575(4%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K L EI ++ +EGK+ K P NTP+F IKKK S Sbjct 597 VKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDST 656 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL+KKK VT+LD+GDAYF++PL+E +R+YT Sbjct 657 KWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLHEDFRKYTA 716 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M ILE + +Q+P++ YMDD+Y+ Sbjct 717 FTIPSINNETPGTRYQYNVLPQGWKGSPAIFQSSMTTILEPFRKQNPDLVIYQYMDDLYV 776 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR +++L ++ ++GFT P++K QK P W+G+ELHP W Q LPE Sbjct 777 GSDLEIGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPE- 835 Query 244 TKGTITLNKLQKLVGELVWRQSI-IGKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I G + + KL+ G + L + E E R Sbjct 836 -KDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENR 894 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YY+ KD+ ++ G Y +YQE K L + +Q Sbjct 895 EILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQ 954 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + +A QK+ E I+ GK P LP ++E W + TW+P +F + W Sbjct 955 LTEAVQKIATESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWY 1014 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E ++ T+Y DG ++ K+G G++ + G +K + TNQ+ EL+AI AL Sbjct 1015 QLE-KEPIIGAETFYVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLAL 1073 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + D ++ + ++I+E KK+++ + WVP HKGI Sbjct 1074 QDSGLEVNIVTDSQYALGIIQAQPDRS--ESELVSQIIEQLIKKEKVYLAWVPAHKGIGG 1131 Query 533 NEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 NE++DK +S +FL +GI +EE Y Sbjct 1132 NEQVDKLVSAGIRKVLFL----DGIDKAQEEHEKY 1162 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:H_VI991] Sequence ID: Q9Q720.3 Length: 1436 Range 1: 598 to 1141 Score:372 bits(955), Expect:6e-112, Method:Compositional matrix adjust., Identities:225/548(41%), Positives:330/548(60%), Gaps:15/548(2%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 V LK G GP V QWPLTEEK+K LTEI ++ +EGK+ K P NTPIF IKKK S Sbjct 598 VTLKPGMDGPKVKQWPLTEEKIKALTEICLEMEKEGKISKIGPENPYNTPIFAIKKKNST 657 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 +WR L+DFRELNK+T+D E QLG+PHP GL+KKK V++LD+G AYF++PL+E +R+YT Sbjct 658 RWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVSVLDVGGAYFSVPLHEDFRKYTA 717 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +ILE + +Q+PE+ YMDD+Y+ Sbjct 718 FTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPEVIIYQYMDDLYV 777 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HRE +++L ++ ++GFT P++K QK P W+G+ELHP W Q LPE Sbjct 778 GSDLEIGQHREKIEELRAHLLRWGFTTPDQKHQKEPPFLWMGYELHPDKWTVQPVKLPE- 836 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I G + + L+ G + L + + E R Sbjct 837 -KDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCXLLRGAKALTEIVPLTKEAELELAENR 895 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YY+ K++ ++ G Y +YQE K L +++ +Q Sbjct 896 EILKEPVHGAYYDPSKELIAEIQKQGPDQWTYQIYQEPFKNLKTGKYAKMRSAHTNDVKQ 955 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMPKFWSCYRGHTRWRKR 417 + + QK+ E I+ GKIP LP ++E W + TW+P++ H Sbjct 956 LTEVVQKIATESIVIWGKIPKFRLPIQKETWETWWTEHWQATWIPEWEFVNTPHLVKLWY 1015 Query 418 NIIEEVVEGP-TYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEALK 473 + E +EG TYY DG ++ K+G G++ G +K E TNQ+ EL+AI AL+ Sbjct 1016 QLETEPIEGAETYYVDGAANRETKMGKAGYVTDRGKQKIVSLTETTNQKTELQAIYLALQ 1075 Query 474 QGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQN 533 + +N+VTDS+YA + D+ ++ + +I+E KK++ + WVP HKGI N Sbjct 1076 ESGPEVNIVTDSQYALGIIQAQPDKS--ESELVNQIIEELIKKEKFYLSWVPAHKGIGGN 1133 Query 534 EEIDKYIS 541 E++DK +S Sbjct 1134 EQVDKLVS 1141 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:B_ARV2/SF2] Sequence ID: P03369.3 Length: 1437 Range 1: 599 to 1142 Score:371 bits(952), Expect:2e-111, Method:Compositional matrix adjust., Identities:226/549(41%), Positives:334/549(60%), Gaps:17/549(3%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K L EI ++ +EGK+ K P NTP+F IKKK S Sbjct 599 VKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDST 658 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL+KKK VT+LD+GDAYF++PL + +R+YT Sbjct 659 KWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTA 718 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +ILE + +Q+P+I YMDD+Y+ Sbjct 719 FTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYV 778 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR +++L ++ ++GFT P++K QK P W+G+ELHP W Q LPE Sbjct 779 GSDLEIGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIMLPE- 837 Query 244 TKGTITLNKLQKLVGELVWRQSI-IGKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I G + + KL+ G + L + E E R Sbjct 838 -KDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGTKALTEVIPLTEEAELELAENR 896 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIK--NLSIPQQ 358 + L+E + YY+ KD+ ++ G Y +YQE K L ++ + + +Q Sbjct 897 EILKEPVHEVYYDPSKDLVAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQ 956 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + +A QK++ E I+ GKIP LP ++E W ++ TW+P +F + W Sbjct 957 LTEAVQKVSTESIVIWGKIPKFKLPIQKETWEAWWMEYWQATWIPEWEFVNTPPLVKLWY 1016 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E +V T+Y DG ++ K+G G++ G +K + TNQ+ EL+AI AL Sbjct 1017 QLE-KEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVVSIADTTNQKTELQAIHLAL 1075 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + D+ ++ + ++I+E KK+++ + WVP HKGI Sbjct 1076 QDSGLEVNIVTDSQYALGIIQAQPDKS--ESELVSQIIEQLIKKEKVYLAWVPAHKGIGG 1133 Query 533 NEEIDKYIS 541 NE++DK +S Sbjct 1134 NEQVDKLVS 1142 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (JRCSF ISOLATE)] Sequence ID: P20875.3 Length: 1439 Range 1: 601 to 1144 Score:371 bits(952), Expect:2e-111, Method:Compositional matrix adjust., Identities:225/549(41%), Positives:331/549(60%), Gaps:17/549(3%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K L EI ++ +EGK+ K P NTP+F IKKK S Sbjct 601 VKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDST 660 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELN++T+D E QLG+PHP GL+KKK VT+LD+GDAYF++PL + +R+YT Sbjct 661 KWRKLVDFRELNRRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTA 720 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +ILE + +Q+P+I YMDD+Y+ Sbjct 721 FTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIIIYQYMDDLYV 780 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR +++L ++ ++GFT P++K QK P W+G+ELHP W Q LPE Sbjct 781 GSDLEIGQHRTKIEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPE- 839 Query 244 TKGTITLNKLQKLVGELVWRQSI-IGKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I G + + KL+ G + L + + E R Sbjct 840 -KDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGTKALTEVIPLTKEAELELAENR 898 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YY+ KD+ ++ G Y ++QE K L + +Q Sbjct 899 EILKEPVHGVYYDPSKDLIVEIQKQGQGQWTYQIFQEPFKNLKTGKYARTRGAHTNDVKQ 958 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + +A QK+ E I+ GKIP LP ++E W + TW+P +F + W Sbjct 959 LTEAVQKIANESIVIWGKIPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWY 1018 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E +V T+Y DG ++ K+G G++ S G +K + TNQ+ EL+AI AL Sbjct 1019 QLE-KEPIVGAETFYVDGAANRETKLGKAGYVTSRGRQKVVSLTDTTNQKTELQAIHLAL 1077 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + D+ ++ + ++I+E KK+++ + WVP HKGI Sbjct 1078 QDSGLEVNIVTDSQYALGIIQAQPDKS--ESELVSQIIEQLIKKEKVYLAWVPAHKGIGG 1135 Query 533 NEEIDKYIS 541 NE++DK +S Sbjct 1136 NEQVDKLVS 1144 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (RF/HAT ISOLATE)] Sequence ID: P05959.3 Length: 1436 Range 1: 598 to 1141 Score:370 bits(951), Expect:2e-111, Method:Compositional matrix adjust., Identities:224/549(41%), Positives:331/549(60%), Gaps:17/549(3%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K L EI ++ +EGK+ K P NTP+F IKKK S Sbjct 598 VKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDST 657 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL+KKK VT+LD+GDAYF++PL + +R+YT Sbjct 658 KWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKEFRKYTA 717 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +ILE + +Q+PEI YMDD+Y+ Sbjct 718 FTIPSINNETPRIRYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQNPEIVIYQYMDDLYV 777 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR +++L ++ ++GFT P++K QK P W+G+ELHP W Q LPE Sbjct 778 GSDLEIGQHRIKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPE- 836 Query 244 TKGTITLNKLQKLVGELVWRQSI-IGKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I G + + KL+ G + L ++ + E R Sbjct 837 -KDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGTKALTEVVQLTKEAELELAENR 895 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YY+ KD+ ++ G Y +YQE K L ++ +Q Sbjct 896 EILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQ 955 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + +A QK+ E I+ GK P LP ++E W + TW+P +F + W Sbjct 956 LTEAVQKVATESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWY 1015 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E ++ T+Y DG ++ K+G G++ G +K + TNQ+ EL+AI AL Sbjct 1016 QLE-KEPIIGAETFYVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLAL 1074 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + D+ ++ + ++I+E KK+++ + WVP HKGI Sbjct 1075 QDSGLEVNIVTDSQYALGIIQAQPDKS--ESELVSQIIEQLIKKEKVYLAWVPAHKGIGG 1132 Query 533 NEEIDKYIS 541 NE++D+ +S Sbjct 1133 NEQVDRLVS 1141 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:F2_MP255C] Sequence ID: Q9QBZ5.3 Length: 1430 Range 1: 592 to 1157 Score:370 bits(951), Expect:2e-111, Method:Compositional matrix adjust., Identities:232/575(40%), Positives:339/575(58%), Gaps:26/575(4%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K LTEI ++ +EGK+ K P NTP+F IKKK S Sbjct 592 VKLKPGMDGPRVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPVFAIKKKDST 651 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL+KKK VT+LD+GDAYF++PL + +R+YT Sbjct 652 KWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKEFRKYTA 711 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +ILE + ++PEI YMDD+Y+ Sbjct 712 FTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRAKNPEIVIYQYMDDLYV 771 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR +++L ++ ++GFT P++K QK P W+G+ELHP W Q LPE Sbjct 772 GSDLEIGQHRTKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPE- 830 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I G I ++ +L+ G + L + E R Sbjct 831 -KSSWTVNDIQKLVGKLNWASQIYPGIRIKHLCRLLRGAKALTDVVPLTAEAELELAENR 889 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + ++E + G YY+ KD+ ++ G Y +YQE K L K+ +Q Sbjct 890 EIIKEPVHGVYYDPSKDLIAEIQKQGHDQWTYQIYQEPYKNLKTGKYAKRKSAHTNDVKQ 949 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + + QK+ E I+ GKIP LP ++E W + + TW+P +F + W Sbjct 950 LTEVVQKIATESIVIWGKIPKFRLPIQKETWEIWWTEYWQATWIPEWEFVNTPPLVKLWY 1009 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E + T+Y DG ++ K+G G++ G +K E TNQ+ EL+AI AL Sbjct 1010 QLE-TEPIAGAETFYVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELQAIHLAL 1068 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + D+ ++ + +I+E +K+++ + WVP HKGI Sbjct 1069 QDSGSEVNIVTDSQYALGIIQAQPDKS--ESELVNQIIEQLIQKEKVYLSWVPAHKGIGG 1126 Query 533 NEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 NE++DK +S +FL +GI +EE Y Sbjct 1127 NEQVDKLVSSGIRKVLFL----DGIDKAQEEHEKY 1157 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:B_HXB2R] Sequence ID: P04585.4 Length: 1435 Range 1: 597 to 1140 Score:370 bits(950), Expect:3e-111, Method:Compositional matrix adjust., Identities:227/549(41%), Positives:330/549(60%), Gaps:17/549(3%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K L EI ++ +EGK+ K P NTP+F IKKK S Sbjct 597 VKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDST 656 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL+KKK VT+LD+GDAYF++PL E +R+YT Sbjct 657 KWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTA 716 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +ILE + +Q+P+I YMDD+Y+ Sbjct 717 FTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYV 776 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR +++L ++ ++G T P++K QK P W+G+ELHP W Q LPE Sbjct 777 GSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPE- 835 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I G + + KL+ G + L + E E R Sbjct 836 -KDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENR 894 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YY+ KD+ ++ G Y +YQE K L ++ +Q Sbjct 895 EILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQ 954 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + +A QK+T E I+ GK P LP ++E W + TW+P +F + W Sbjct 955 LTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWY 1014 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E +V T+Y DG ++ K+G G++ + G +K + TNQ+ EL+AI AL Sbjct 1015 QLE-KEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLAL 1073 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + D+ ++ + +I+E KK+++ + WVP HKGI Sbjct 1074 QDSGLEVNIVTDSQYALGIIQAQPDQS--ESELVNQIIEQLIKKEKVYLAWVPAHKGIGG 1131 Query 533 NEEIDKYIS 541 NE++DK +S Sbjct 1132 NEQVDKLVS 1140 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:G_SE6165] Sequence ID: O89940.3 Length: 1433 Range 1: 595 to 1160 Score:370 bits(950), Expect:3e-111, Method:Compositional matrix adjust., Identities:235/584(40%), Positives:333/584(57%), Gaps:44/584(7%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K LTEI ++ EEGK+ K P NTPIF IKKK S Sbjct 595 VKLKPGMDGPRVKQWPLTEEKIKALTEICKEMEEEGKISKIGPENPYNTPIFAIKKKDST 654 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL+KKK VT+LD+GDAYF++PL E +R+YT Sbjct 655 KWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTA 714 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M ILE + +PE+ YMDD+Y+ Sbjct 715 FTIPSINNETPGVRYQYNVLPQGWKGSPAIFQSSMTRILEPFRANNPEMVIYQYMDDLYV 774 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR +++L ++ ++GFT P++K QK P W+G+ELHP W Q LP+ Sbjct 775 GSDLEIGQHRAKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPD- 833 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I G + ++ KL+ G + L + E R Sbjct 834 -KESWTVNDIQKLVGKLNWASQIYPGIKVTHLCKLLRGAKALTDIVSLTAEAEMELAENR 892 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVN--VVHNIKNLSIPQQ 358 + L E + G YY+ K++ ++ G Y +YQE K L + + +Q Sbjct 893 EILREPVHGVYYDPSKELIAEVQKQGLDQWTYQIYQEPYKNLKTGKYAKRGSAHTNDVKQ 952 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL------------ELQLGNITWMPKFWS 406 + + QK+ E I+ GK P LP ++E W + E + N + K W Sbjct 953 LTEVVQKIATESIVIWGKTPKFKLPIRKETWEIWWTDYWQATWIPEWEFVNTPPLVKLW- 1011 Query 407 CYRGHTRWRKRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQL 463 YR T E + TYY DG ++ K+G G++ G +K E TNQ+ Sbjct 1012 -YRLET--------EPIPGAETYYVDGAANRETKLGKAGYVTDKGKQKIITLTETTNQKA 1062 Query 464 ELRAIEEALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHW 523 EL+AI+ AL+ +N+VTDS+YA + D + + +I+E KK+++ + W Sbjct 1063 ELQAIQLALQDSRSEVNIVTDSQYALGIIQAQPDRS--EAELVNQIIEQLIKKEKVYLSW 1120 Query 524 VPGHKGIPQNEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 VP HKGI NE++DK +S +FL +GI +EE Y Sbjct 1121 VPAHKGIGGNEQVDKLVSSGIRKVLFL----DGIDKAQEEHERY 1160 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (BRU ISOLATE)] Sequence ID: P03367.3 Length: 1447 Range 1: 609 to 1152 Score:370 bits(950), Expect:3e-111, Method:Compositional matrix adjust., Identities:227/549(41%), Positives:329/549(59%), Gaps:17/549(3%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K L EI ++ +EGK+ K P NTP+F IKKK S Sbjct 609 VKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDST 668 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL+KKK VT+LD+GDAYF++PL E +R+YT Sbjct 669 KWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTA 728 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +ILE + +Q+P+I YMDD+Y+ Sbjct 729 FTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYV 788 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR +++L ++ ++G T P++K QK P W+G+ELHP W Q LPE Sbjct 789 GSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPE- 847 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I G + + KL+ G + L + E E R Sbjct 848 -KDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENR 906 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YY+ KD+ ++ G Y +YQE K L + +Q Sbjct 907 EILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQ 966 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + +A QK+T E I+ GK P LP ++E W + TW+P +F + W Sbjct 967 LTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWY 1026 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E +V T+Y DG ++ K+G G++ + G +K + TNQ+ EL+AI AL Sbjct 1027 QLE-KEPIVGAETFYVDGAASRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIHLAL 1085 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + D+ ++ + +I+E KK+++ + WVP HKGI Sbjct 1086 QDSGLEVNIVTDSQYALGIIQAQPDKS--ESELVNQIIEQLIKKEKVYLAWVPAHKGIGG 1143 Query 533 NEEIDKYIS 541 NE++DK +S Sbjct 1144 NEQVDKLVS 1152 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:B_MN] Sequence ID: P05961.3 Length: 1441 Range 1: 603 to 1146 Score:370 bits(949), Expect:4e-111, Method:Compositional matrix adjust., Identities:225/549(41%), Positives:330/549(60%), Gaps:17/549(3%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K L EI ++ +EGK+ K P NTP+F IKKK S Sbjct 603 VKLKPGMDGPKVKQWPLTEEKIKALIEICTEMEKEGKISKIGPENPYNTPVFAIKKKDST 662 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL+KKK VT+LD+GDAYF++PL + +R+YT Sbjct 663 KWRKLVDFRELNKKTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTA 722 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +ILE + +Q+P+I YMDD+Y+ Sbjct 723 FTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYV 782 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR +++L ++ ++GFT P++K QK P W+G+ELHP W Q LPE Sbjct 783 GSDLEIGQHRAKIEELRRHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPE- 841 Query 244 TKGTITLNKLQKLVGELVWRQSI-IGKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I G + + KL+ G + L + E E R Sbjct 842 -KDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGTKALTEVIPLTEEAELELAENR 900 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YY+ KD+ ++ G Y +YQE K L ++ +Q Sbjct 901 EILKEPVHGVYYDPSKDLIAEVQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQ 960 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMPKFWSCYRGHTRWRKR 417 + +A QK+ E I+ GK P LP ++E W + TW+P+ W + Sbjct 961 LTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWTEYTXATWIPE-WEVVNTPPLVKLW 1019 Query 418 NIIEE--VVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 +E+ +V T+Y DG ++ K G G++ + G +K + TNQ+ EL+AI AL Sbjct 1020 YQLEKEPIVGAETFYVDGAANRETKKGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLAL 1079 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + D+ ++ + ++I+E KK+++ + WVP HKGI Sbjct 1080 QDSGLEVNIVTDSQYALGIIQAQPDKS--ESELVSQIIEQLIKKEKVYLAWVPAHKGIGG 1137 Query 533 NEEIDKYIS 541 NE++DK +S Sbjct 1138 NEQVDKLVS 1146 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (BH5 ISOLATE)] Sequence ID: P04587.3 Length: 1447 Range 1: 609 to 1174 Score:370 bits(949), Expect:5e-111, Method:Compositional matrix adjust., Identities:233/575(41%), Positives:339/575(58%), Gaps:26/575(4%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K L EI ++ +EGK+ K P NTP+F IKKK S Sbjct 609 VKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDST 668 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELN++T+D E QLG+PHP GL+KKK VT+LD+GDAYF++PL E +R+YT Sbjct 669 KWRKLVDFRELNRRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTA 728 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P Y + VLPQGWK SP+++Q +M +ILE + +Q+P+I YMDD+Y+ Sbjct 729 FTIPSINNETPGSGYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYV 788 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR +++L ++ ++GFT P++K QK P W+G+ELHP W Q LPE Sbjct 789 GSDLEIGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTIQPIVLPE- 847 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I G + + KL+ G + L + E E R Sbjct 848 -KDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENR 906 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YY+ KD+ ++ G Y +YQE K L ++ +Q Sbjct 907 EILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQ 966 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + +A QK+T E I+ GK P LP ++E W + TW+P +F + W Sbjct 967 LTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWY 1026 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E +V T+Y DG ++ K+G G++ + G +K TNQ+ EL+AI AL Sbjct 1027 QLE-KEPIVGAETFYVDGAASRETKLGKAGYVTNRGRQKVVTLTHTTNQKTELQAIHLAL 1085 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + D+ ++ + +I+E KK+++ + WVP HKGI Sbjct 1086 QDSGLEVNIVTDSQYALGIIQAQPDKS--ESELVNQIIEQLIKKEKVYLAWVPAHKGIGG 1143 Query 533 NEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 NE++DK +S +FL +GI +EE Y Sbjct 1144 NEQVDKLVSAGIRKILFL----DGIDKAQEEHEKY 1174 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:H_90CF056] Sequence ID: O93215.4 Length: 1435 Range 1: 597 to 1162 Score:369 bits(948), Expect:6e-111, Method:Compositional matrix adjust., Identities:231/575(40%), Positives:338/575(58%), Gaps:26/575(4%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K LTEI ++ +EGK+ + P +TPIF IKKK S Sbjct 597 VKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISRIGPENPYSTPIFAIKKKDST 656 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL+KKK V++LD+GDAYF++PL + +R+YT Sbjct 657 KWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVSVLDVGDAYFSVPLDKEFRKYTA 716 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +IL + +Q+PE+ YMDD+Y+ Sbjct 717 FTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILAPFREQNPEMVIYQYMDDLYV 776 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR +++L ++ ++GFT P++K QK P W+G+ELHP W Q LPE Sbjct 777 GSDLEIGQHRAKIEELRAHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQTVKLPE- 835 Query 244 TKGTITLNKLQKLVGELVWRQSIIGK-SIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I + + KL+ G + L + + E R Sbjct 836 -KDSWTVNDIQKLVGKLNWASQIYPNIKVKQLCKLLRGAKALTDIIPLTKEAELELAENR 894 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L E + G YY+ KD+ ++ G Y +YQE K L ++ +Q Sbjct 895 EILREPIHGVYYDPSKDLIAEIRKQGQGQWTYQIYQEPFKNLKTGKYAKMRTAHTNDIKQ 954 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMPKFWSCYRGH--TRWR 415 + +A QK++ E I+ GKIP LP ++E W + TW+P++ H W Sbjct 955 LTEAVQKISTESIVIWGKIPKFRLPIQKETWETWWTEYWQATWIPEWEFVNTPHLVKLWY 1014 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E + TYY DG ++ K+G G++ G +K E TNQ+ EL+AI AL Sbjct 1015 QLE-TEPIAGAETYYIDGAANRETKLGKAGYVTDRGKQKVVSLTETTNQKTELQAIYLAL 1073 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + D+ ++ + +I+E KK+++ + WVP HKGI Sbjct 1074 QDSGLEVNIVTDSQYALGIIQAQPDKS--ESELVNQIIEELIKKEKVYLSWVPAHKGIGG 1131 Query 533 NEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 NE++DK +S +FL +GI +EE Y Sbjct 1132 NEQVDKLVSSGVRKVLFL----DGIDKAQEEHERY 1162 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 O_MVP5180] Sequence ID: Q79666.3 Length: 1446 Range 1: 598 to 1163 Score:369 bits(948), Expect:6e-111, Method:Compositional matrix adjust., Identities:230/575(40%), Positives:338/575(58%), Gaps:26/575(4%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPL+ EK++ LT I ++ +EGK+ + P NTPIF IKKK S Sbjct 598 VKLKPGMDGPKVKQWPLSREKIEALTAICQEMEQEGKISRIGPENPYNTPIFAIKKKDST 657 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHPGGL++++ VT+LD+GDAYF+ PL +R+YT Sbjct 658 KWRKLVDFRELNKRTQDFWEVQLGIPHPGGLKQRQSVTVLDVGDAYFSCPLDPDFRKYTA 717 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +IL+ + + +PE++ Y+DD+Y+ Sbjct 718 FTIPSVNNETPGVRYQYNVLPQGWKGSPAIFQSSMTKILDPFRKSNPEVEIYQYIDDLYV 777 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDL + +HR+ V+ L ++ Q+GFT P++K QK P W+G+ELHP W Q LP+ Sbjct 778 GSDLPLAEHRKRVELLREHLYQWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPD- 836 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K T+N +QKLVG+L W I G + + KL+ G + L + + E E R Sbjct 837 -KEVWTVNDIQKLVGKLNWASQIYQGIRVKELCKLIRGTKSLTEVVPLSKEAELELEENR 895 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVN--VVHNIKNLSIPQQ 358 +KL+E + G YY DKD++ + G+ Y VYQ++ K L + + +Q Sbjct 896 EKLKEPVHGVYYQPDKDLWVSIQKHGEGQWTYQVYQDEHKNLKTGKYARQKASHTNDIRQ 955 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + + QK++QE I+ GK+P LP E W + TW+P +F S W Sbjct 956 LAEVVQKVSQEAIVIWGKLPKFRLPVTRETWETWWAEYWQATWIPEWEFVSTPPLIKLWY 1015 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E +V T+Y DG + K+G G++ G + K EE TNQ+ EL A+ AL Sbjct 1016 QLE-TEPIVGAETFYVDGAANRNTKLGKAGYVTEQGKQNIIKLEETTNQKAELMAVLIAL 1074 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + + +N+VTDS+Y + + +PI +I+E KK+R+ + WVP HKGI Sbjct 1075 QDSKEQVNIVTDSQYVLGIISSQPTQS--DSPIVQQIIEELTKKERVYLTWVPAHKGIGG 1132 Query 533 NEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 NE+IDK +S+ +FL EGI +E+ Y Sbjct 1133 NEKIDKLVSKDIRRVLFL----EGIDQAQEDHEKY 1163 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 N_YBF30] Sequence ID: O91080.3 Length: 1449 Range 1: 607 to 1150 Score:369 bits(948), Expect:7e-111, Method:Compositional matrix adjust., Identities:226/558(41%), Positives:329/558(58%), Gaps:35/558(6%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLT EK++ L EI ++ +EGK+ + P NTPIF IKKK S Sbjct 607 VKLKPGMDGPKVKQWPLTTEKIEALREICTEMEKEGKISRIGPENPYNTPIFAIKKKDST 666 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL++KK VT+LD+GDAYF+ PL + +R+YT Sbjct 667 KWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKQKKSVTVLDVGDAYFSCPLDKDFRKYTA 726 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q TM +ILE + ++HPEI YMDD+Y+ Sbjct 727 FTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSTMTKILEPFREKHPEIIIYQYMDDLYV 786 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLE+ +HRE V+DL +++ ++GFT P++K QK P W+G+ELHP W Q LPE Sbjct 787 GSDLELAQHREAVEDLRDHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIKLPE- 845 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K T+N +QKLVG+L W I G + + KL+ G + L E E R Sbjct 846 -KDVWTVNDIQKLVGKLNWASQIYPGIRVKQLCKLIRGTKALTEVVNFTEEAELELAENR 904 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YY+ K++ ++ G Y +YQE K L +++ +Q Sbjct 905 EILKEPLHGVYYDPGKELVAEIQKQGQGQWTYQIYQELHKNLKTGKYAKMRSAHTNDIKQ 964 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL------------ELQLGNITWMPKFWS 406 +++ +K+ E I+ GK P LP ++E W E + N + K W Sbjct 965 LVEVVRKVATESIVIWGKTPKFRLPVQKEVWEAWWTDHWQATWIPEWEFVNTPPLVKLW- 1023 Query 407 CYRGHTRWRKRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQL 463 Y+ T E + T+Y DG ++ K+G GF+ G +K + TNQ+ Sbjct 1024 -YQLET--------EPISGAETFYVDGAANRETKLGKAGFVTDRGRQKVVSIADTTNQKA 1074 Query 464 ELRAIEEALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHW 523 EL+AI AL++ + +N+VTDS+YA + D+ ++ + ++I+E KK+R+ + W Sbjct 1075 ELQAILMALQESGRDVNIVTDSQYAMGIIHSQPDKS--ESELVSQIIEELIKKERVYLSW 1132 Query 524 VPGHKGIPQNEEIDKYIS 541 VP HKGI NE++DK +S Sbjct 1133 VPAHKGIGGNEQVDKLVS 1150 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 lw12.3 isolate] Sequence ID: P0C6F2.1 Length: 1435 Range 1: 597 to 1140 Score:369 bits(947), Expect:7e-111, Method:Compositional matrix adjust., Identities:227/549(41%), Positives:329/549(59%), Gaps:17/549(3%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K L EI ++ +EGK+ K P NTP+F IKKK S Sbjct 597 VKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDST 656 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL+KKK VT+LD+GDAYF++PL E +R+YT Sbjct 657 KWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTA 716 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +ILE + +Q+P+I YMDD+Y+ Sbjct 717 FTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYV 776 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR +++L ++ ++G T P++K QK P W+G+ELHP W Q LPE Sbjct 777 GSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPE- 835 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I G + + KL+ G + L + E E R Sbjct 836 -KDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENR 894 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YY+ KD+ ++ G Y +YQE K L ++ +Q Sbjct 895 EILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGTHTNDVKQ 954 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + +A QK+T E I+ GK P LP ++E W + TW+P +F + W Sbjct 955 LTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWY 1014 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E +V T+Y DG ++ K+G G++ + G +K TNQ+ EL+AI AL Sbjct 1015 QLE-KEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLAL 1073 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + D+ ++ + +I+E KK+++ + WVP HKGI Sbjct 1074 QDSGLEVNIVTDSQYALGIIQAQPDKS--ESELVNQIIEQLIKKEKVYLAWVPAHKGIGG 1131 Query 533 NEEIDKYIS 541 NE++DK +S Sbjct 1132 NEQVDKLVS 1140 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 BH10] Sequence ID: P03366.3 Length: 1447 Range 1: 609 to 1152 Score:369 bits(947), Expect:9e-111, Method:Compositional matrix adjust., Identities:227/549(41%), Positives:329/549(59%), Gaps:17/549(3%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K L EI ++ +EGK+ K P NTP+F IKKK S Sbjct 609 VKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDST 668 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL+KKK VT+LD+GDAYF++PL E +R+YT Sbjct 669 KWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTA 728 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +ILE + +Q+P+I YMDD+Y+ Sbjct 729 FTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYV 788 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR +++L ++ ++G T P++K QK P W+G+ELHP W Q LPE Sbjct 789 GSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPE- 847 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I G + + KL+ G + L + E E R Sbjct 848 -KDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENR 906 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YY+ KD+ ++ G Y +YQE K L ++ +Q Sbjct 907 EILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQ 966 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + +A QK+T E I+ GK P LP ++E W + TW+P +F + W Sbjct 967 LTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWY 1026 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E +V T+Y DG ++ K+G G++ + G +K TNQ+ EL+AI AL Sbjct 1027 QLE-KEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLAL 1085 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + D+ ++ + +I+E KK+++ + WVP HKGI Sbjct 1086 QDSGLEVNIVTDSQYALGIIQAQPDKS--ESELVNQIIEQLIKKEKVYLAWVPAHKGIGG 1143 Query 533 NEEIDKYIS 541 NE++DK +S Sbjct 1144 NEQVDKLVS 1152 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)] Sequence ID: P12497.4 Length: 1435 Range 1: 597 to 1162 Score:367 bits(942), Expect:3e-110, Method:Compositional matrix adjust., Identities:231/575(40%), Positives:339/575(58%), Gaps:26/575(4%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K L EI ++ +EGK+ K P NTP+F IKKK S Sbjct 597 VKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDST 656 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL++KK VT+LD+GDAYF++PL + +R+YT Sbjct 657 KWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKQKKSVTVLDVGDAYFSVPLDKDFRKYTA 716 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +ILE + +Q+P+I YMDD+Y+ Sbjct 717 FTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPDIVIYQYMDDLYV 776 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR +++L ++ ++GFT P++K QK P W+G+ELHP W Q LPE Sbjct 777 GSDLEIGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPE- 835 Query 244 TKGTITLNKLQKLVGELVWRQSI-IGKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I G + + KL+ G + L + E E R Sbjct 836 -KDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENR 894 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YY+ KD+ ++ G Y +YQE K L +K +Q Sbjct 895 EILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMKGAHTNDVKQ 954 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + +A QK+ E I+ GK P LP ++E W + TW+P +F + W Sbjct 955 LTEAVQKIATESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWY 1014 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E ++ T+Y DG ++ K+G G++ G +K + TNQ+ EL+AI AL Sbjct 1015 QLE-KEPIIGAETFYVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLAL 1073 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + D+ ++ + ++I+E KK+++ + WVP HKGI Sbjct 1074 QDSGLEVNIVTDSQYALGIIQAQPDKS--ESELVSQIIEQLIKKEKVYLAWVPAHKGIGG 1131 Query 533 NEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 NE++D +S +FL +GI +EE Y Sbjct 1132 NEQVDGLVSAGIRKVLFL----DGIDKAQEEHEKY 1162 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:C_92BR025] Sequence ID: O12158.2 Length: 1431 Range 1: 593 to 1158 Score:367 bits(942), Expect:4e-110, Method:Compositional matrix adjust., Identities:237/575(41%), Positives:332/575(57%), Gaps:26/575(4%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QW LTEEK+K LT I D++ EGK+ K P NTP+F IKKK S Sbjct 593 VKLKPGMDGPKVKQWLLTEEKIKALTAICDEMEREGKITKIGPENPYNTPVFAIKKKDST 652 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T D E QLG+PHP GL+KKK VT+LD+GDAYF++PL E +R+YT Sbjct 653 KWRKLVDFRELNKRTWDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEGFRKYTA 712 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SPS++Q + +ILE + Q+PEI YMDD+Y+ Sbjct 713 FTIPSINNETPGIRYQYNVLPQGWKGSPSIFQSSTTKILEPFRAQNPEIIIYQYMDDLYV 772 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR +++L ++ ++GFT P++K QK P W+G+ELHP W Q LPE Sbjct 773 GSDLEIGQHRAKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPE- 831 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I G + + KL+ G + L + E E R Sbjct 832 -KDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKALTDIVPLTEEAELELAENR 890 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YY+ KD+ ++ G Y +YQE K L ++ +Q Sbjct 891 EILKEPVHGVYYDPSKDLIAEIQKQGQNQWTYQIYQEPFKNLKTGKYAKMRTAHTNDVRQ 950 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + +A QK+ E II GK P LP ++E W TW+P +F + W Sbjct 951 LTEAVQKIALESIIIWGKTPKFRLPIQKETWEAWWTDYWQATWIPEWEFVNTPPLVKLWY 1010 Query 416 KRNIIEEVVEGPTYYTDGGKKN--KVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E + T+Y DG K+G G++ G +K E TNQ+ EL+AI+ AL Sbjct 1011 QLE-KEPIAGAETFYVDGAANREIKMGKAGYVTDRGRQKIVSITETTNQKTELQAIQLAL 1069 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + D+ ++ + +I+E KK+R+ + WVP HKGI Sbjct 1070 QDSGSEVNIVTDSQYALGIIQAQPDKS--ESELVNQIIEQLIKKERVYLSWVPAHKGIGG 1127 Query 533 NEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 NE++DK +S +FL +GI +EE Y Sbjct 1128 NEQVDKLVSSGIRKVLFL----DGINKAQEEHEKY 1158 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:K_96CM-MP535] Sequence ID: Q9QBY3.3 Length: 1430 Range 1: 592 to 1157 Score:367 bits(942), Expect:4e-110, Method:Compositional matrix adjust., Identities:233/575(41%), Positives:338/575(58%), Gaps:26/575(4%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K LTEI ++ +EGK+ K P NTP+F IKKK S Sbjct 592 VKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPVFAIKKKDST 651 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL+KKK VT+LD+GDAYF++PL + +R+YT Sbjct 652 KWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTA 711 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +ILE + ++PE+ YMDD+Y+ Sbjct 712 FTIPSINNETPGVRYQYNVLPQGWKGSPAIFQHSMTKILEPFRIKNPEMVIYQYMDDLYV 771 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI + R +++L ++ ++GFT P++K QK P W+G+ELHP W Q LP+ Sbjct 772 GSDLEIGQPRTKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPD- 830 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I G + + KL+ G + L + E R Sbjct 831 -KDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGVKALTDIVPLTAEAELELAENR 889 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YY+ KD+ ++ G+ Y +YQE K L +++ +Q Sbjct 890 EILKEPVHGVYYDPSKDLIAEIQKQGNDQWTYQIYQEPHKNLKTGKYARMRSAHTNDVKQ 949 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + +A QK+ E I+ GK P LP ++E W + TW+P +F + W Sbjct 950 LTEAVQKIATEGIVIWGKTPKFRLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWY 1009 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E +V T+Y DG ++ K G G++ G +K E TNQ+ EL+AI AL Sbjct 1010 QLE-TEPIVGAETFYVDGAAHRETKKGRAGYVTDRGRQKVVSITETTNQKAELQAICLAL 1068 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + D+ ++ + +I+E KK+RI + WVP HKGI Sbjct 1069 QDSGSEVNIVTDSQYALGIIQAQPDKS--ESDLVNQIIEQLIKKERIYLSWVPAHKGIGG 1126 Query 533 NEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 NE++DK +S +FL +GI +EE Y Sbjct 1127 NEQVDKLVSAGIRKVLFL----DGIDKAQEEHEKY 1157 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (STRAIN UGANDAN / ISOLATE U455)] Sequence ID: P24740.3 Length: 1428 Range 1: 590 to 1133 Score:367 bits(941), Expect:5e-110, Method:Compositional matrix adjust., Identities:225/549(41%), Positives:325/549(59%), Gaps:17/549(3%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK GP V QWPLTEEK+K LTEI +++ +EGK+ K P NTP+F IKKK S Sbjct 590 VKLKPEMDGPKVKQWPLTEEKIKALTEICNEMEKEGKISKIGPENPYNTPVFAIKKKDST 649 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PH GL+KKK VT+LD+GDAYF++PL E +R+YT Sbjct 650 KWRKLVDFRELNKRTQDFWEVQLGIPHTAGLKKKKSVTVLDVGDAYFSVPLDESFRKYTA 709 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SPS++Q +M +ILE + QHP+I YMDD+Y+ Sbjct 710 FTIPSINNETPGVRYQYNVLPQGWKGSPSIFQSSMTKILEPFRSQHPDIVIYQYMDDLYV 769 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR +++L ++ +GF P++K QK P W+G+ELHP W Q LPE Sbjct 770 GSDLEIGQHRAKIEELRAHLLSWGFITPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPE- 828 Query 244 TKGTITLNKLQKLVGELVWRQSI-IGKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I G + + KL+ G + L + E E R Sbjct 829 -KDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTDIVTLTEEAELELAENR 887 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L++ + G YY+ KD+ ++ G Y +YQE K L ++ +Q Sbjct 888 EILKDPVHGVYYDPSKDLVAEIQKQGQDQWTYQIYQEPFKNLKTGKYARKRSAHTNDVKQ 947 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + + QK++ E I+ GKIP LP ++E W ++ TW+P +F + W Sbjct 948 LTEVVQKVSTESIVIWGKIPKFRLPIQKETWEAWWMEYWQATWIPEWEFVNTPPLVKLWY 1007 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + + + T+Y DG ++ K+G G++ G +K E TNQ+ EL AI AL Sbjct 1008 QLE-KDPIAGAETFYVDGAANRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAIHLAL 1066 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + D ++ I +I+E +K+++ + WVP HKGI Sbjct 1067 QDSGSEVNIVTDSQYALGIIQAQPDRS--ESEIVNQIIEKLIEKEKVYLSWVPAHKGIGG 1124 Query 533 NEEIDKYIS 541 NE++DK +S Sbjct 1125 NEQVDKLVS 1133 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:C_ETH2220] Sequence ID: Q75002.3 Length: 1439 Range 1: 601 to 1166 Score:366 bits(940), Expect:9e-110, Method:Compositional matrix adjust., Identities:233/576(40%), Positives:337/576(58%), Gaps:28/576(4%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K LT I +++ +EGK+ + P NTP+F IKKK S Sbjct 601 VKLKPGMDGPKVKQWPLTEEKIKALTAICEEMEQEGKISRIGPENPYNTPVFAIKKKDST 660 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL+KKK VT+LD+GDAYF++PL E +R+YT Sbjct 661 KWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEGFRKYTA 720 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP ++Q +M +ILE + +PEI YMDD+Y+ Sbjct 721 FTIPSTNNETPGIRYQYNVLPQGWKGSPPIFQSSMPQILEPFRAPNPEIVIYQYMDDLYV 780 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR +++L ++ ++GFT P++K QK P W+G+ELHP W Q LPE Sbjct 781 GSDLEIGQHRAPIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPE- 839 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I G + + KL+ G + L + E E R Sbjct 840 -KDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKALTDIVTLTEEAELELAENR 898 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVN--VVHNIKNLSIPQQ 358 + L+E + G +Y+ KD+ ++ G+ + YQE K L + + +Q Sbjct 899 EILKEPVHGVFYDPSKDLIAEIQKQGNDQWTFQFYQEPFKNLKTGKFAKRGTAHTNDVKQ 958 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + QK+ E I+ GK P LP ++E W TW+P +F + W Sbjct 959 LTAVVQKIALESIVIWGKTPKFRLPIQKETWEAWWTDYWQATWIPEWEFVNTPPLVKLWY 1018 Query 416 KRNIIEEVVEG-PTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEA 471 + + +E + G T+Y DG ++ K+G G++ G +K E TNQ+ EL+AI+ A Sbjct 1019 Q--LEKEPIAGVETFYVDGAANRETKIGKAGYVTDRGRQKIVSLTETTNQKTELQAIQLA 1076 Query 472 LKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIP 531 L+ +N+VTDS+YA +L D+ ++ I +I+E K+R+ + WVP HKGI Sbjct 1077 LQDSGSEVNIVTDSQYALGIILAQPDKS--ESEIVNQIIEQLISKERVYLSWVPAHKGIG 1134 Query 532 QNEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 NE++DK +S +FL +GI +EE Y Sbjct 1135 GNEQVDKLVSSGIRKVLFL----DGIDKAQEEHEKY 1166 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:K_97ZR-EQTB11] Sequence ID: Q9QBZ9.2 Length: 1429 Range 1: 592 to 1157 Score:366 bits(939), Expect:1e-109, Method:Compositional matrix adjust., Identities:231/575(40%), Positives:335/575(58%), Gaps:26/575(4%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K L EI ++ +EGK+ K P NTP+F IKKK S Sbjct 592 VKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDST 651 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KW L+DFRELNK+T D E QLG+PHP GL+KKK VT+LD+GDAYF++PL + +R+YT Sbjct 652 KWIKLVDFRELNKRTPDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTA 711 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +ILE + +++P++ YMDD+Y+ Sbjct 712 FTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRRKNPDMVLYQYMDDLYV 771 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR +++L ++ ++GFT P++K QK P W+G+ELHP W Q LP+ Sbjct 772 GSDLEIGQHRAKIEELREHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPD- 830 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I G + + KL+ G + L + E R Sbjct 831 -KDSWTVNDIQKLVGKLNWASQIFPGIKVKQLCKLLRGVKALTDIVPLTAEAELELAENR 889 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YY+ KD+ ++ G Y +YQE K L I++ +Q Sbjct 890 EILKEPVHGVYYDPSKDLIAEIQKQGHGQWTYQIYQEPYKNLKTGKYARIRSAHTNDVKQ 949 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + + QK+ E I+ GK P LP ++E W + TW+P +F + W Sbjct 950 LTEVVQKVAMESIVIWGKTPKFRLPIQKETWGTWWTEYWQATWIPEWEFVNTPPLVKLWY 1009 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E +V T+Y DG ++ K G G++ G +K E TNQ+ EL+AI AL Sbjct 1010 QLE-TEPIVGAETFYVDGAANRETKQGKAGYVTDKGRQKVISITETTNQKTELQAIHLAL 1068 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + D+ ++ + +I+E KKDR+ + WVP HKGI Sbjct 1069 QDSGSEVNIVTDSQYALGIIQAQPDKS--ESELVNQIIEQLIKKDRVYLSWVPAHKGIGG 1126 Query 533 NEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 NE++DK +S +FL +GI +EE Y Sbjct 1127 NEQVDKLVSSGIRKVLFL----DGIDKAQEEHEKY 1157 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:J_SE9280] Sequence ID: Q9WC54.3 Length: 1432 Range 1: 594 to 1137 Score:365 bits(936), Expect:3e-109, Method:Compositional matrix adjust., Identities:222/549(40%), Positives:326/549(59%), Gaps:17/549(3%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP + QWPLTEEK+K LT+I ++ EEGK+ + P NTP+F IKKK S Sbjct 594 VKLKPGMDGPKIKQWPLTEEKIKALTQICAEMEEEGKISRVGPENPYNTPVFAIKKKDST 653 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL+KKK VT+LD+GDAYF++PLYE +R+YT Sbjct 654 KWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLYEDFRKYTA 713 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +IL+ + +++PEI YMDD+Y+ Sbjct 714 FTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILKPFRERNPEIVIYQYMDDLYV 773 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI++HR +K+L ++ ++GFT P++K QK P W+G+ELHP W Q LPE Sbjct 774 GSDLEIEQHRRKIKELREHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPE- 832 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K T+N +QKLVG+L W I G + + KL++G + L + E + Sbjct 833 -KEDWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLKGAKALTDIVPLTREAELELAENK 891 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YY+ K++ ++ G Y +YQE K L ++ +Q Sbjct 892 EILKEPVHGVYYDSAKELIAEVQKQGLDQWTYQIYQEPFKNLKTGKYAKRRSAHTNDVKQ 951 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + + QK+ E I+ GK P LP + E W TW+P +F + W Sbjct 952 LAEVVQKIALEAIVIWGKTPKFRLPIQRETWETWWTDYWQATWIPEWEFVNTPPLVKLWY 1011 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E ++ T+Y DG ++ K G G++ G +K + TNQ+ EL AI AL Sbjct 1012 QLE-KEPIMGAETFYVDGASNRETKTGKAGYVTDKGRQKVVTLTDTTNQKTELHAIYLAL 1070 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + D+ ++ + +I+E KK+++ + WVP HKGI Sbjct 1071 RDSGLEVNIVTDSQYALGIIQAQPDKS--ESELVNQIIEELIKKEKVYLSWVPAHKGIGG 1128 Query 533 NEEIDKYIS 541 NE++DK +S Sbjct 1129 NEQVDKLVS 1137 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:F1_93BR020] Sequence ID: O89290.3 Length: 1430 Range 1: 592 to 1157 Score:364 bits(935), Expect:3e-109, Method:Compositional matrix adjust., Identities:229/575(40%), Positives:338/575(58%), Gaps:26/575(4%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K LTEI ++ +EGK+ K P NTP+F IKKK S Sbjct 592 VKLKPGMDGPKVKQWPLTEEKIKALTEICMEMEKEGKISKIGPENPYNTPVFAIKKKDST 651 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL+KKK VT+LD+GDAYF++PL + +R+YT Sbjct 652 KWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTA 711 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 T+ S NN P RY + VLPQGWK SP+++Q++M +IL+ + ++P+I YMDD+Y+ Sbjct 712 STIPSTNNETPGVRYQYNVLPQGWKGSPAIFQYSMTKILDPFRAKNPDIVIYQYMDDLYV 771 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR +++L ++ ++G T P++K QK P W+G+ELHP W Q LP+ Sbjct 772 GSDLEIGQHRTKIEELREHLLKWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPD- 830 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I G + + KL+ G + L + E R Sbjct 831 -KDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGAKALTDIVPLTTEAELELAENR 889 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YY+ KD+ ++ G Y +YQE K L +++ +Q Sbjct 890 EILKEPVHGAYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYAKMRSAHTNDVKQ 949 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + +A QK++ E I+ GK P LP +E W + TW+P +F + W Sbjct 950 LTEAVQKISLESIVIWGKTPKFRLPILKETWDTWWTEYWQATWIPEWEFVNTPPLVKLWY 1009 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E +V T+Y DG ++ K G G++ G +K E TNQ+ EL+AI+ AL Sbjct 1010 QLE-TEPIVGAETFYVDGASNRETKKGKAGYVTDRGRQKAVSLTETTNQKAELQAIQLAL 1068 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + D+ ++ + +I+E KK+++ + WVP HKGI Sbjct 1069 QDSGSEVNIVTDSQYALGIIQAQPDKS--ESELVNQIIEQLIKKEKVYLSWVPAHKGIGG 1126 Query 533 NEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 NE++DK +S +FL +GI +EE Y Sbjct 1127 NEQVDKLVSAGIRKVLFL----DGIDKAQEEHEKY 1157 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (ELI ISOLATE)] Sequence ID: P04589.3 Length: 1435 Range 1: 597 to 1162 Score:364 bits(934), Expect:5e-109, Method:Compositional matrix adjust., Identities:230/575(40%), Positives:337/575(58%), Gaps:26/575(4%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K LTEI + +EGK+ + P NTPIF IKKK S Sbjct 597 VKLKPGMDGPKVKQWPLTEEKIKALTEICTDMEKEGKISRIGPENPYNTPIFAIKKKDST 656 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL+KKK VT+LD+GDAYF++PL E +R+YT Sbjct 657 KWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTA 716 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +ILE + +Q+PE+ YMDD+Y+ Sbjct 717 FTISSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPEMVIYQYMDDLYV 776 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR ++ L ++ ++GFT P++K QK P W+G+ELHP W Q LPE Sbjct 777 GSDLEIGQHRTKIEKLREHLLRWGFTRPDKKHQKEPPFLWMGYELHPDKWTVQSIKLPE- 835 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +Q LV L W I G + + KL+ G + L + E E R Sbjct 836 -KESWTVNDIQNLVERLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENR 894 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YY+ KD+ ++ G Y +YQE K L ++ +Q Sbjct 895 EILKEPVHGVYYDPSKDLIAEIQKQGHGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQ 954 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + +A Q+++ E I+ G+ P LP ++E W + TW+P +F + W Sbjct 955 LAEAVQRISTESIVIWGRTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWY 1014 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E ++ T+Y DG ++ K+G G++ G +K + TNQ+ EL+AI AL Sbjct 1015 QLE-KEPIIGAETFYVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAINLAL 1073 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + D+ ++ + +I+E KK+++ + WVP HKGI Sbjct 1074 QDSGLEVNIVTDSQYALGIIQAQPDKS--ESELVNQIIEQLIKKEKVYLAWVPAHKGIGG 1131 Query 533 NEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 NE++DK +S+ +FL +GI +EE Y Sbjct 1132 NEQVDKLVSQGIRKVLFL----DGIDKAQEEHEKY 1162 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [SIVcpz MB66] Sequence ID: Q1A267.4 Length: 1438 Range 1: 596 to 1161 Score:363 bits(932), Expect:9e-109, Method:Compositional matrix adjust., Identities:230/575(40%), Positives:337/575(58%), Gaps:26/575(4%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 V LK G GP V QWPLTEEK++ LTEI ++ +EGK+ + P NTPIF IKKK S Sbjct 596 VSLKPGMDGPRVKQWPLTEEKIRALTEICTEMEKEGKISRVGPENPYNTPIFAIKKKDST 655 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL++KK VT+LD+GDAYF+ PL E +R+YT Sbjct 656 KWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKQKKSVTVLDVGDAYFSCPLDENFRKYTA 715 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +ILE + +Q+PEI YMDD+Y+ Sbjct 716 FTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPEIIIYQYMDDLYV 775 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDL+I+ HRE V++L ++ ++GFT P++K QK P W+G+ELHP W Q LPE Sbjct 776 GSDLKIELHREKVEELRAHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPE- 834 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKL+G+L W I G + + KL+ G + L E R Sbjct 835 -KESWTVNDIQKLIGKLNWACQIYPGIRVKQLCKLIRGTKALTEVVTFTTEAELELAENR 893 Query 303 KKLEE-MEGNYYNKDKDVYGQLA-WGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YY+ K++ ++ G Y ++QE+ K L +++ +Q Sbjct 894 EILKEPVHGAYYDPSKELIAEIQKQGQGQWTYQIFQEQYKNLKTGKYARMRSAHTNDVKQ 953 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMPKFWSCYRGHTRWRKR 417 + + QK+ E I+ GK+P LP ++E W TW+P+ W + Sbjct 954 LTEVVQKVALESIVIWGKVPRFRLPIQKETWEAWWTDYWQATWIPE-WEYVNTPPLVKLW 1012 Query 418 NIIEE--VVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 +E+ + T+Y DG ++ K+G G++ G +K E TNQ+ EL+AI+ AL Sbjct 1013 YQLEQDPIPGAETFYVDGAANRETKLGKAGYVTDKGRQKIISLTETTNQKAELQAIQLAL 1072 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + D ++ I +I+E KK+++ + WVP HKGI Sbjct 1073 QDSEVEVNIVTDSQYALGIIQGQPDTS--ESEIVNQIIEELIKKEKVYLSWVPAHKGIGG 1130 Query 533 NEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 NE+IDK +S +FL +GI +EE Y Sbjct 1131 NEQIDKLVSSGIRKVLFL----DGIDKAQEEHEKY 1161 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 O_ANT70] Sequence ID: Q77373.3 Length: 1435 Range 1: 596 to 1161 Score:362 bits(929), Expect:3e-108, Method:Compositional matrix adjust., Identities:230/575(40%), Positives:341/575(59%), Gaps:26/575(4%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSG- 63 VKLK G GP V QWPL++EK++ LT I ++ +EGK+ + P NTPIF IKKK G Sbjct 596 VKLKPGMDGPKVKQWPLSKEKIEALTAICQEMEQEGKISRIGPENPYNTPIFAIKKKDGT 655 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T++ E QLG+PHPGGL++K+ VT+LD+GDAYF+ PL +R+YT Sbjct 656 KWRKLVDFRELNKRTQEFWEVQLGIPHPGGLKQKQSVTVLDVGDAYFSCPLDPDFRKYTA 715 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +IL+ + + +PE++ YMDD+Y+ Sbjct 716 FTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILDPFRRDNPELEICQYMDDLYV 775 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDL + +HR+ ++ L ++ Q+GFT P++K QK P W+G+ELHP W Q LP Sbjct 776 GSDLPLTEHRKRIELLREHLYQWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQSIQLP-- 833 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K T+N +QKL+G+L W I G + + KL+ G + L + E E R Sbjct 834 NKDVWTVNDIQKLIGKLNWASQIYQGIRVRELCKLIRGTKSLTEVVPLSREAELELEENR 893 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVN--VVHNIKNLSIPQQ 358 ++L++ + G YY DKD++ + G + Y +YQE+ K L + + +Q Sbjct 894 ERLKQPVHGVYYQPDKDLWVNIQKQGGEQWTYQIYQEEHKNLKTGKYTRQKASHTNDIRQ 953 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + + QK++QE II GK+P LP E W TW+P +F S W Sbjct 954 LAEVIQKVSQESIIIWGKLPKFKLPVTRETWETWWADYWQATWIPEWEFVSTPPLIKLWY 1013 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E ++ TYY DG ++ K+G G++ G +K K +E TNQ+ EL AI AL Sbjct 1014 RLE-SEPIMGAETYYVDGAANRETKLGKAGYVTEQGKQKIIKLDETTNQKAELMAILLAL 1072 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +T+N+VTDS+YA + + ++PI +I+E KK+++ + WVP HKGI Sbjct 1073 QDSKETVNIVTDSQYALGVISSQPTQS--ESPIVQQIIEELTKKEQVYLTWVPAHKGIGG 1130 Query 533 NEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 NE+IDK +S+ +FL EGI +E+ Y Sbjct 1131 NEKIDKLVSKDIRRVLFL----EGIDQAQEDHEKY 1161 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Simian immunodeficiency virus (ISOLATE GB1)] Sequence ID: P22382.2 Length: 1441 Range 1: 602 to 1171 Score:362 bits(928), Expect:4e-108, Method:Compositional matrix adjust., Identities:230/585(39%), Positives:337/585(57%), Gaps:38/585(6%) Query 1 PITKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKK 60 PITKVKLK G GP + QWPL++EK+ GL +I D+L EEGK+ + P NTPIF IKK Sbjct 602 PITKVKLKPGVDGPRIKQWPLSKEKIVGLQKICDRLEEEGKISRVDPGNNYNTPIFAIKK 661 Query 61 KS-GKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYR 119 K +WR LIDFRELNK T+D E QLG+PHP G++K K +T+LDIGDAYF+IPL YR Sbjct 662 KDKNEWRKLIDFRELNKLTQDFHELQLGIPHPAGIKKCKRITVLDIGDAYFSIPLDPDYR 721 Query 120 EYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMD 179 YT FT+ S NN P KRY + VLPQGWK SP ++Q T+ +LE + + HP +Q YMD Sbjct 722 PYTAFTVPSVNNQAPGKRYMYNVLPQGWKGSPCIFQGTVASLLEVFRKNHPTVQLYQYMD 781 Query 180 DIYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHT 239 D+++GSD ++H + + +L + + PE+K QK P W+G+ELHP WK +K Sbjct 782 DLFVGSDYTAEEHEKAIVELRALLMTWNLETPEKKYQKEPPFHWMGYELHPDKWKIEKVQ 841 Query 240 LPELTKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEW 298 LPEL + T+N++QKLVG+L W + G + KL+ G + + + E E+ Sbjct 842 LPELAEQP-TVNEIQKLVGKLNWAAQLYPGIKTKQLCKLIRGGLNITEKVTMTEEARLEY 900 Query 299 EACRKKL-EEMEGNYYNKDKDVYGQL---AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLS 354 E ++ L EE EG+YY+ +K++Y + GD + ++ ++G + + + + Sbjct 901 EQNKEILAEEQEGSYYDPNKELYVRFQKTTGGDISFQW----KQGNKVLRAGKYGKQKTA 956 Query 355 IPQQVIK---AAQKLTQEVIIRTGKIPWILLPGKE---EDWRLELQLGNITWMP--KFWS 406 ++K A QK+ +E I+ G +P + +P EDW E TW+P +F S Sbjct 957 HSNDLMKLAGATQKVGRESIVIWGFVPKMQIPTTREIWEDWWHEYW--QCTWIPEVEFIS 1014 Query 407 CYRGHTRWRKRNIIEEVVEG-PTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQ 462 W ++ E +EG TYY DG + +K+G G+I G ++ ++ TNQQ Sbjct 1015 TPMLEREW--YSLSPEPLEGVETYYVDGAANRDSKMGKAGYITDRGFQRVEEYLNTTNQQ 1072 Query 463 LELRAIEEALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVH 522 EL A++ AL+ +N+VTDS+Y L E +PI I+E+ K++I + Sbjct 1073 TELHAVKLALEDSGSYVNIVTDSQYVVGILASRPTE--TDHPIVKEIIELMKGKEKIYLS 1130 Query 523 WVPGHKGIPQNEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 W+P HKGI NE+IDK +S +FL + I P +EE Y Sbjct 1131 WLPAHKGIGGNEQIDKLVSSGIRKVLFL----QNIEPAQEEHEKY 1171 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:J_SE9173] Sequence ID: Q9WC63.3 Length: 1432 Range 1: 594 to 1159 Score:361 bits(927), Expect:4e-108, Method:Compositional matrix adjust., Identities:230/575(40%), Positives:337/575(58%), Gaps:26/575(4%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP + QWPLTEEK+K LT+I +L EEGK+ + P NTP+F IKKK S Sbjct 594 VKLKPGMDGPKIKQWPLTEEKIKALTQICAELEEEGKISRIGPENPYNTPVFAIKKKDST 653 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL+KKK VT+LD+GDAYF++PLYE +R+YT Sbjct 654 KWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLYEDFRKYTA 713 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +IL+ + +++PEI YMDD+Y+ Sbjct 714 FTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILKPFRERNPEIVIYQYMDDLYV 773 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI++HR +K+L ++ ++GF P++K QK P W+G+ELHP W Q LPE Sbjct 774 GSDLEIEQHRRKIKELREHLLKWGFYTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPE- 832 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K T+N +QKLVG+L W I G I + KL+ G + L + E + Sbjct 833 -KEDWTVNDIQKLVGKLNWASQIYPGIKIKELCKLIRGAKALTDIVPLTREAELELAENK 891 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YY+ +++ ++ G Y +YQE K L ++ +Q Sbjct 892 EILKEPVHGVYYDPARELIAEVQKQGLDQWTYQIYQEPFKNLKTGKYAKRRSAHTNDVKQ 951 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + + QK+ E I+ GK P LP ++E W TW+P +F + W Sbjct 952 LSQVVQKIALEAIVIWGKTPKFRLPIQKETWETWWTDYWQATWIPEWEFVNTPPLVKLWY 1011 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E ++ T+Y DG ++ KVG G++ G +K + TNQ+ EL+AI AL Sbjct 1012 QLE-KEPIMGAETFYVDGASNRETKVGKAGYVTDKGRQKVITLTDTTNQKTELQAIYLAL 1070 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + D+ ++ + +I+E KK+++ + WVP HKGI Sbjct 1071 QDSGIEVNIVTDSQYALGIIQAQPDKS--ESELVNQIIEELIKKEKVYLSWVPAHKGIGG 1128 Query 533 NEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 NE++DK +S +FL +GI +EE Y Sbjct 1129 NEQVDKLVSSGIRKVLFL----DGIDKAQEEHEKY 1159 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 N_YBF106] Sequence ID: Q9IDV9.3 Length: 1449 Range 1: 607 to 1172 Score:362 bits(928), Expect:4e-108, Method:Compositional matrix adjust., Identities:231/575(40%), Positives:332/575(57%), Gaps:26/575(4%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLT EK++ L EI ++ +EGK+ + P NTPIF IKKK S Sbjct 607 VKLKPGMDGPRVKQWPLTAEKIEALREICTEMEKEGKISRIGPENPYNTPIFAIKKKDST 666 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T++ E QLG+PHP GL++KK VT+ D+GDAYF+ PL + +R+YT Sbjct 667 KWRKLVDFRELNKRTQEFWEVQLGIPHPAGLKQKKSVTVXDVGDAYFSCPLDKDFRKYTA 726 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +ILE + ++HPEI YMDD+Y+ Sbjct 727 FTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKKHPEIIIYQYMDDLYV 786 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HRE V++L ++ ++GFT P++K QK P W+G+ELHP W Q LPE Sbjct 787 GSDLEIAQHRETVEELRGHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIKLPE- 845 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K T+N +QKLVG+L W I G + + KL+ G + L + E R Sbjct 846 -KEVWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLIRGTKALTEVVTFTQEAELELAENR 904 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YY+ K++ ++ G Y +YQE K L ++ ++ Sbjct 905 EILKEPLHGVYYDPGKELIAEIQKQGQGQWTYQIYQEPYKNLKTGKYAKXRSAHTNDIKE 964 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + QK+ E I+ GK P LP ++E W + TW+P +F + W Sbjct 965 LAAVVQKVATESIVIWGKTPKFKLPVQKEVWETWWTEHWQATWIPEWEFVNTPPLVKLWY 1024 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E + TYY DG K+ K+G GF+ G +K E TNQ+ EL+AI AL Sbjct 1025 QLE-TEPISGAETYYVDGAANKETKLGKAGFVTDRGRQKVVSIENTTNQKAELQAILLAL 1083 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 ++ Q N+VTDS+YA + D+ ++ + +I+E KK+R+ + WVP HKGI Sbjct 1084 QESGQEANIVTDSQYAMGIIHSQPDKS--ESDLVGQIIEELIKKERVYLSWVPAHKGIGG 1141 Query 533 NEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 NE++D +S +FL +GI +EE Y Sbjct 1142 NEQVDXLVSSGIRXVLFL----DGIEKAQEEHERY 1172 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Simian immunodeficiency virus (MM251 ISOLATE)] Sequence ID: P05897.3 Length: 1448 Range 1: 604 to 1170 Score:358 bits(919), Expect:7e-107, Method:Compositional matrix adjust., Identities:237/577(41%), Positives:333/577(57%), Gaps:27/577(4%) Query 3 TKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKS 62 KV LK G GP + QWPL++EK+ L EI +K+ ++G+L +APP NTP F IKKK Sbjct 604 VKVTLKPGKVGPKLKQWPLSKEKIVALREICEKMEKDGQLEEAPPTNPYNTPTFAIKKKD 663 Query 63 -GKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREY 121 KWRMLIDFRELN+ T+D TE QLG+PHP GL K+K +T+LDIGDAYF+IPL E +R+Y Sbjct 664 KNKWRMLIDFRELNRVTQDFTEVQLGIPHPAGLAKRKRITVLDIGDAYFSIPLDEEFRQY 723 Query 122 TCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDI 181 T FTL S NN P KRY +KVLPQGWK SP+++Q+TM+ +LE + + +P++ YMDDI Sbjct 724 TAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQYTMRHVLEPFRKANPDVTLVQYMDDI 783 Query 182 YIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLP 241 I SD +H +V L + GF+ PEEK QK P +W+G+EL P WK QK LP Sbjct 784 LIASDRTDLEHDRVVLQLKELLNSIGFSTPEEKFQKDPPFQWMGYELWPTKWKLQKIELP 843 Query 242 ELTKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEA 300 + + T T+N +QKLVG L W I G ++ +L+ G L E + E+ E+E Sbjct 844 Q--RETWTVNDIQKLVGVLNWAAQIYPGIKTKHLCRLIRGKMTLTEEVQWTEMAEAEYEE 901 Query 301 CRKKL-EEMEGNYYNKDKDVYGQLAWG-DKAIEYIVYQEKGKPLWVNVVHNIKNLSIP-- 356 + L +E EG YY + K + + D Y ++QE K L V IKN Sbjct 902 NKIILSQEQEGCYYQEGKPLEATVIKSQDNQWSYKIHQED-KILKVGKFAKIKNTHTNGV 960 Query 357 QQVIKAAQKLTQEVIIRTGKIPWILLPGKEEDW-RLELQLGNITWMPKFWSCYRGHTRWR 415 + + QK+ +E I+ G++P LP + + W + +TW+P++ Sbjct 961 RLLAHVIQKIGKEAIVIWGQVPKFHLPVERDVWEQWWTDYWQVTWIPEWDFISTPPLVRL 1020 Query 416 KRNIIEEVVEG-PTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEA 471 N++++ +EG TYYTDG K++K G G+I G +K + E+ TNQQ EL A A Sbjct 1021 VFNLVKDPIEGEETYYTDGSCNKQSKEGKAGYITDRGKDKVKVLEQTTNQQAELEAFLMA 1080 Query 472 L-KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGI 530 L GP+T N++ DS+Y + E ++ + +I+E KK I V WVP HKGI Sbjct 1081 LTDSGPKT-NIIVDSQYVMGIITGCPTES--ESRLVNQIIEEMIKKSEIYVAWVPAHKGI 1137 Query 531 PQNEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 N+EID +S+ +FL K I P +EE Y Sbjct 1138 GGNQEIDHLVSQGIRQVLFLEK----IEPAQEEHDKY 1170 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:F1_VI850] Sequence ID: Q9QSR3.3 Length: 1430 Range 1: 591 to 1157 Score:356 bits(913), Expect:4e-106, Method:Compositional matrix adjust., Identities:230/576(40%), Positives:332/576(57%), Gaps:27/576(4%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K LTEI ++ +EGK+ K P NTP+F IKKK S Sbjct 591 VKLKPGMDGPKVKQWPLTEEKIKALTEICLEMEKEGKISKIGPENPYNTPVFAIKKKDSS 650 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DF+ELNK+T+D E QLG+PHP GL+KKK VT+LD+GDAYF++PL + +++YT Sbjct 651 KWRKLVDFKELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFKKYTA 710 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +ILE + ++P+I YMDD+Y+ Sbjct 711 FTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRMKNPDIVIYQYMDDLYV 770 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR +++L ++ ++GFT P++K QK P W+G ELHP W Q LP Sbjct 771 GSDLEIGQHRTKIEELREHLLRWGFTTPDKKHQKEPPFLWMGHELHPDKWTVQPIQLP-- 828 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I G + + KL+ G + L + E R Sbjct 829 NKDSWTVNDIQKLVGKLNWASQIYPGIKVRPLCKLLRGAKALTDIVPLTAEAELELAKNR 888 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L E + G YY+ KD+ ++ GD Y +YQ K L +++ +Q Sbjct 889 EILREPVHGVYYDPSKDLIAEIQKQGDGQWTYQIYQNPFKNLKTGKYAKVRSAHTNDVKQ 948 Query 359 VIKAAQKLTQEVIIRTGK-IPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRW 414 + +A QK+ E I+ GK P LP +E W TW+P +F + W Sbjct 949 LTEAVQKIALESIVIWGKRSPKFKLPILKETWDTWWTDYWQATWIPEWEFVNTPPLVKLW 1008 Query 415 RKRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEA 471 + E + T+Y DG ++ K G G++ G +K E TNQ+ EL+AI A Sbjct 1009 YQLE-TEPIAGADTFYVDGASNRETKKGKAGYVTDKGKQKVVSLTETTNQKAELQAIYLA 1067 Query 472 LKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIP 531 L+ +N+VTDS+YA + D+ ++ I +I+E +K+R+ + WVP HKGI Sbjct 1068 LQDSGSEVNIVTDSQYALGIIQAQPDKS--ESEIVNQIIEQLIQKERVYLSWVPAHKGIG 1125 Query 532 QNEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 NE++DK +S +FL +GI +EE Y Sbjct 1126 GNEQVDKLVSAGVRKILFL----DGIDKAQEEHEKY 1157 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [SIVcpz GAB1] Sequence ID: P17283.2 Length: 1384 Range 1: 546 to 1089 Score:355 bits(912), Expect:4e-106, Method:Compositional matrix adjust., Identities:225/549(41%), Positives:324/549(59%), Gaps:17/549(3%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPL+ EK+K LTEI ++ +EGK+ K P NTPIF IKKK S Sbjct 546 VKLKPGMDGPKVKQWPLSAEKIKALTEICQEMEKEGKISKIGPENPYNTPIFAIKKKDST 605 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL+KKK VT+LD+GDAYF+ PL + +R+YT Sbjct 606 KWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSCPLDKDFRKYTA 665 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SPS++Q +M +ILE + +++P+I YMDD+Y+ Sbjct 666 FTIPSINNETPGVRYQYNVLPQGWKGSPSIFQSSMTKILEPFREKNPDITIYQYMDDLYV 725 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR+ V++L ++ ++GFT P++K QK P W+G+ELHP W Q LPE Sbjct 726 GSDLEIDQHRKKVEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPE- 784 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K T+N +QKL+G+L W I G I + KL+ G ++L + E R Sbjct 785 -KEVWTVNDIQKLIGKLNWASQIYPGIKIKQLCKLIRGTKKLTDVVPLTPEAELELAENR 843 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + + + G YY+ DK++ ++ G+ Y ++QE K L ++ +Q Sbjct 844 EIVSTPVHGVYYDPDKELIAEIQKQGNCQWTYQIFQEPHKNLKTGKYARQRSAHTNDIRQ 903 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + +A QK+ E I+ GK P LP ++E W + TW+P +F + W Sbjct 904 LAEAVQKIATESIVIWGKTPKFRLPVQKESWEAWWAEYWQATWIPEWEFINTPPLVKLWY 963 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 E + TYY DG ++ K G G++ G +K E TNQQ EL+A+ AL Sbjct 964 SLE-TEPIPTTDTYYVDGAANRETKTGKAGYVTDKGKQKIISLENTTNQQAELKALLLAL 1022 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + Q +N+VTDS+Y + D ++ + +I+E KK++I + WVP HKGI Sbjct 1023 QDSDQQVNIVTDSQYVLGIIQSQPDHS--ESELVNQIIEELIKKEKIYLSWVPAHKGIGG 1080 Query 533 NEEIDKYIS 541 NE++DK +S Sbjct 1081 NEQVDKLVS 1089 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:G_92NG083] Sequence ID: O41798.3 Length: 1435 Range 1: 597 to 1162 Score:355 bits(912), Expect:5e-106, Method:Compositional matrix adjust., Identities:230/584(39%), Positives:331/584(56%), Gaps:44/584(7%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K LTEI + +EGK+ K P NTPIF IKKK S Sbjct 597 VKLKPGMDGPRVKQWPLTEEKIKALTEICKDMEKEGKISKIGPENPYNTPIFAIKKKDST 656 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL+KK+ VT+LD+GDAYF++PL + +R+YT Sbjct 657 KWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKRSVTVLDVGDAYFSVPLDKDFRKYTA 716 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +ILE ++PE+ YMDD+Y+ Sbjct 717 FTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPSRTKNPEMVIYQYMDDLYV 776 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR +++L ++ ++G T P++K QK P W+G+ELHP W Q LPE Sbjct 777 GSDLEIGQHRAKIEELREHLLKWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPE- 835 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K T+N +QKLVG+L W I G + ++ +L+ G + L + E R Sbjct 836 -KEDWTVNDIQKLVGKLNWASQIYPGIKVKHLCRLLRGAKALTDIVPLTAEAEMELAENR 894 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVN--VVHNIKNLSIPQQ 358 + L+E + G Y++ K++ ++ G Y +YQE K L + + +Q Sbjct 895 EILKEPVHGVYHDPSKELIAEVQKQGPDQWTYQIYQEPYKNLKTGKYAKRGSAHTNDVKQ 954 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL------------ELQLGNITWMPKFWS 406 + + QK+ E I+ GKIP LP ++E W + E + N + K W Sbjct 955 LTEVVQKIATEGIVIWGKIPKFKLPIRKETWEVWWTEYWQAAWIPEWEFVNTPPLVKLW- 1013 Query 407 CYRGHTRWRKRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQL 463 Y+ T E + TYY DG ++ K+G G + G +K E TNQ+ Sbjct 1014 -YQLET--------EPIPGAETYYVDGAANRETKLGKAGHVTDKGKQKIITLTETTNQKA 1064 Query 464 ELRAIEEALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHW 523 EL AI+ AL+ +N+VTDS+YA + D + + +I+E KK+++ + W Sbjct 1065 ELHAIQLALQDSRPEVNIVTDSQYALGIIQAQPDRS--GSELVNQIIEQLIKKEKVYLSW 1122 Query 524 VPGHKGIPQNEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 VP HKGI NE++DK +S +FL +GI +EE Y Sbjct 1123 VPAHKGIGGNEQVDKLVSSGIRKVLFL----DGIDKAQEEHERY 1162 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (ISOLATE SBLISY)] Sequence ID: P12451.3 Length: 1462 Range 1: 618 to 1184 Score:355 bits(912), Expect:7e-106, Method:Compositional matrix adjust., Identities:236/580(41%), Positives:334/580(57%), Gaps:33/580(5%) Query 3 TKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKS 62 KV LK G GP QWPLT EK++ L EI +K+ EG+L +APP NTP F IKKK Sbjct 618 VKVTLKPGKDGPKQRQWPLTREKIEALREICEKMEREGQLEEAPPTNPYNTPTFAIKKKD 677 Query 63 -GKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREY 121 KWRMLIDFRELNK T+D TE QLG+PHP GL KK+ +T+LD+GDAYF+IPLYE +R+Y Sbjct 678 KNKWRMLIDFRELNKVTQDFTEVQLGIPHPAGLAKKRRITVLDVGDAYFSIPLYEDFRQY 737 Query 122 TCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDI 181 T FTL S NN P KRY +KVLPQGWK SP+++Q+TM+++LE + + +P++ YMDDI Sbjct 738 TAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQYTMRQVLEPFRKANPDVIIVQYMDDI 797 Query 182 YIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLP 241 I SD +H ++V L + GF+ P+EK QK P +W+G+EL P WK QK LP Sbjct 798 LIASDRTDLEHDKVVLQLKELLNGLGFSTPDEKFQKDPPYQWMGYELWPTKWKLQKIQLP 857 Query 242 ELTKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEA 300 + K T+N +QKLVG L W I G ++ KL+ G ++ +++ + E E Sbjct 858 Q--KEVWTVNDIQKLVGVLNWAAQIYPGIKTKHLCKLIRG--KMTPTEEVQWTELAEAEL 913 Query 301 CRKKL---EEMEGNYYNKDKDVYGQLAWG-DKAIEYIVYQEKGKPLWVNVVHNIKNLSIP 356 K+ +E EG+YY ++K++ + D Y V+Q + K L V IKN Sbjct 914 EENKIILSQEQEGHYYQEEKELEATVQKDQDNQWTYKVHQGE-KILKVGKYAKIKNTHTN 972 Query 357 --QQVIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRLELQLGN---ITWMPKFWSCYRGH 411 + + + QK+ +E ++ G+IP LP + E W E N +TW+P + Sbjct 973 GVRLLAQVVQKIGKEALVIWGRIPKFHLPVERETW--EQWWDNYWQVTWIPDWDFVSTPP 1030 Query 412 TRWRKRNIIEEVVEGP-TYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRA 467 N++++ + G T+YTDG +++K G G+I G +K R E+ TNQQ EL A Sbjct 1031 LVRLAFNLVKDPIPGAETFYTDGSCNRQSKEGKAGYITDRGKDKVRILEQTTNQQAELEA 1090 Query 468 IEEALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGH 527 A+ +N+V DS+Y + E ++ I +I+E KK+ I V WVP H Sbjct 1091 FAMAVTDSGPKVNIVVDSQYVMGIVTGQPAES--ESRIVNKIIEEMIKKEAIYVAWVPAH 1148 Query 528 KGIPQNEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 KGI N+EID +S+ +FL E I P +EE Y Sbjct 1149 KGIGGNQEIDHLVSQGIRQVLFL----ERIEPAQEEHGKY 1184 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Simian immunodeficiency virus (MM142-83 ISOLATE)] Sequence ID: P05896.2 Length: 1448 Range 1: 597 to 1170 Score:355 bits(911), Expect:8e-106, Method:Compositional matrix adjust., Identities:235/583(40%), Positives:333/583(57%), Gaps:30/583(5%) Query 1 PITKVK-----LKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPI 55 PI KV+ LK G GP + QWPL++EK+ L EI +K+ ++G+L +APP NTP Sbjct 597 PIAKVEPVKSPLKPGKDGPKLKQWPLSKEKIVALREICEKMEKDGQLEEAPPTNPYNTPT 656 Query 56 FCIKKKS-GKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPL 114 F IKKK KWRMLIDFRELN+ T+D TE QLG+PHP GL K+K +T+LDIGDAYF+IPL Sbjct 657 FAIKKKDKNKWRMLIDFRELNRVTQDFTEVQLGIPHPAGLAKRKRITVLDIGDAYFSIPL 716 Query 115 YEPYREYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQF 174 E +R+YT FTL S NN P KRY +KVLPQGWK SP+++Q+TM+ +LE + + +P++ Sbjct 717 DEEFRQYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQYTMRHVLEPFRKANPDVTL 776 Query 175 GIYMDDIYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWK 234 YMDDI I SD +H +V L + GF+ PEEK QK P +W+G+EL P WK Sbjct 777 VQYMDDILIASDRTDLEHDRVVLQLKELLNSIGFSSPEEKFQKDPPFQWMGYELWPTKWK 836 Query 235 FQKHTLPELTKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEV 293 QK LP+ + T T+N +QKLVG L W I G ++ +L+ G L E + E+ Sbjct 837 LQKIELPQ--RETWTVNDIQKLVGVLNWAAQIYPGIKTKHLCRLIRGKMTLTEEVQWTEM 894 Query 294 HVKEWEACRKKL-EEMEGNYYNKDKDVYGQLAWG-DKAIEYIVYQEKGKPLWVNVVHNIK 351 E+E + L +E EG YY + K + + D Y ++QE K L V IK Sbjct 895 AEAEYEENKIILSQEQEGCYYQESKPLEATVIKSQDNQWSYKIHQED-KILKVGKFAKIK 953 Query 352 NLSIP--QQVIKAAQKLTQEVIIRTGKIPWILLPGKEEDW-RLELQLGNITWMPKFWSCY 408 N + + QK+ +E I+ G++P LP +++ W + +TW+P++ Sbjct 954 NTHTNGVRLLAHVIQKIGKEAIVIWGQVPKFHLPVEKDVWEQWWTDYWQVTWIPEWDFIS 1013 Query 409 RGHTRWRKRNIIEEVVEG-PTYYTDG--GKKNKVGSLGFIVSTG-EKFRKHEEGTNQQLE 464 N++++ +EG TYY DG K++K G G+I G +K + E+ TNQQ E Sbjct 1014 TPPLVRLVFNLVKDPIEGEETYYVDGSCSKQSKEGKAGYITDRGKDKVKVLEQTTNQQAE 1073 Query 465 LRAIEEALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWV 524 L A AL N++ DS+Y + E ++ + +I+E KK I V WV Sbjct 1074 LEAFLMALTDSGPKANIIVDSQYVMGIITGCPTES--ESRLVNQIIEEMIKKTEIYVAWV 1131 Query 525 PGHKGIPQNEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 P HKGI N+EID +S+ +FL K I P +EE + Y Sbjct 1132 PAHKGIGGNQEIDHLVSQGIRQVLFLEK----IEPAQEEHSKY 1170 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [SIVcpz TAN1] Sequence ID: Q8AII1.4 Length: 1462 Range 1: 621 to 1168 Score:355 bits(911), Expect:9e-106, Method:Compositional matrix adjust., Identities:220/553(40%), Positives:323/553(58%), Gaps:17/553(3%) Query 2 ITKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK 61 + KV+LKEG GP V QWPL++EK++ LTEI L +EGK+ P NTPIF IKKK Sbjct 621 VVKVQLKEGMDGPKVKQWPLSKEKIEALTEICKTLEKEGKISAVGPENPYNTPIFAIKKK 680 Query 62 -SGKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYRE 120 + KWR L+DFRELNK+T+D E QLG+PHP GL+K+ VT+LD+GDAYF+IPL +R+ Sbjct 681 DTSKWRKLVDFRELNKRTQDFWELQLGIPHPAGLRKRNMVTVLDVGDAYFSIPLDPDFRK 740 Query 121 YTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDD 180 YT FT+ S NN P KR+ + VLPQGWK SP+++Q +M +IL+ + ++HP++ YMDD Sbjct 741 YTAFTIPSLNNNTPGKRFQYNVLPQGWKGSPAIFQSSMTKILDPFRKEHPDVDIYQYMDD 800 Query 181 IYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTL 240 +YIGSDL ++HR+++K L ++ +G P++K Q+ P W+G+ELHP W Q TL Sbjct 801 LYIGSDLNEEEHRKLIKKLRQHLLTWGLETPDKKYQEKPPFMWMGYELHPNKWTVQNITL 860 Query 241 PELTKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWE 299 PE + T+ N +QKLVG+L W I G + KL+ G + L ++ E E Sbjct 861 PEPEQWTV--NHIQKLVGKLNWASQIYHGIKTKELCKLIRGVKGLTEPVEMTREAELELE 918 Query 300 ACRKKL-EEMEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIPQ 357 ++ L E+++G YY+ + + G Y +YQE+GK L + Sbjct 919 ENKQILKEKVQGAYYDPKLPLQAAIQKQGQGQWTYQIYQEEGKNLKTGKYAKSPGTHTNE 978 Query 358 --QVIKAAQKLTQEVIIRTGKIPWILLPGKEEDW-RLELQLGNITWMPKFWSCYRGHTRW 414 Q+ QK+ E II G +P LLP +E W + +TW+P+ W Sbjct 979 IRQLAGLIQKIGNESIIIWGIVPKFLLPVSKETWSQWWTDYWQVTWVPE-WEFINTPPLI 1037 Query 415 RK-RNIIEE-VVEGPTYYTDGG--KKNKVGSLGFIVSTGE-KFRKHEEGTNQQLELRAIE 469 R N++ + + E T+Y DG + +K G G++ + G + + E TNQQ EL A++ Sbjct 1038 RLWYNLLSDPIPEAETFYVDGAANRDSKKGRAGYVTNRGRYRSKDLENTTNQQAELWAVD 1097 Query 470 EALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKG 529 ALK +N+VTDS+Y L D+ +PI +I++ +K I + WVP HKG Sbjct 1098 LALKDSGAQVNIVTDSQYVMGVLQGLPDQS--DSPIVEQIIQKLTQKTAIYLAWVPAHKG 1155 Query 530 IPQNEEIDKYISE 542 I NEE+DK +S+ Sbjct 1156 IGGNEEVDKLVSK 1168 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr170Gag-Pol; Contains: RecName: Full=Matrix protein p16; Short=MA; Contains: RecName: Full=p2L; Contains: RecName: Full=Capsid protein p26; Short=CA; Contains: RecName: Full=p3; Contains: RecName: Full=Transframe peptide; AltName: Full=p11; Contains: RecName: Full=Protease; AltName: Full=P119; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; AltName: Full=P72; Contains: RecName: Full=Integrase; Short=IN [Bovine immunodeficiency virus R29] Sequence ID: P19560.2 Length: 1475 Range 1: 593 to 1232 Score:352 bits(903), Expect:1e-104, Method:Compositional matrix adjust., Identities:248/709(35%), Positives:370/709(52%), Gaps:77/709(10%) Query 13 GPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SGKWRMLIDF 71 GP VPQWPLT+EK + L EI+ L+ EGK+ +A NTP+F IKKK +G+WRML+DF Sbjct 593 GPKVPQWPLTKEKYQALKEIVKDLLAEGKISEAAWDNPYNTPVFVIKKKGTGRWRMLMDF 652 Query 72 RELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNN 131 RELNK T E GLP+P G+++ +H+T +DI DAYFTIPL+E +R +T F+++ N Sbjct 653 RELNKITVKGQEFSTGLPYPPGIKECEHLTAIDIKDAYFTIPLHEDFRPFTAFSVVPVNR 712 Query 132 LGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKK 191 GP +R+ W VLPQGW SP++YQ T Q+I+E+ + HP++ YMDD+ IGS+ + Sbjct 713 EGPIERFQWNVLPQGWVCSPAIYQTTTQKIIENIKKSHPDVMLYQYMDDLLIGSNRD--D 770 Query 192 HREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPELTKGTITLN 251 H++IV+++ + + YGF P+EK Q+ KW+GFEL P+ W+FQ L K +T+N Sbjct 771 HKQIVQEIRDKLGSYGFKTPDEKVQEER-VKWIGFELTPKKWRFQPRQLK--IKNPLTVN 827 Query 252 KLQKLVGELVWRQSIIGKSIPNILKLMEGDRELQSERKIEEVHVKEWEACRKKLEEME-G 310 +LQ+LVG VW Q + + + L+ LQ + ++ +K E KL++ E Sbjct 828 ELQQLVGNCVWVQPEVKIPLYPLTDLLRDKTNLQEKIQLTPEAIKCVEEFNLKLKDPEWK 887 Query 311 NYYNKDKDVYGQLAWGDKAIEYIVYQEKGKPLWVNVVH-NIKNLSIPQQVIKAAQKLTQE 369 + + ++ ++ + I + + Q+ G P+W V N + + +++++ +L + Sbjct 888 DRIREGAELVIKIQMVPRGIVFDLLQD-GNPIWGGVKGLNYDHSNKIKKILRTMNELNRT 946 Query 370 VIIRTGKIPWILLPGKEEDWRLELQ----LGNITWMPKFWSCYRGHTRWRKRNIIEEVVE 425 V+I TG+ LLPG EDW LQ L I + KF YR RW +I V E Sbjct 947 VVIMTGREASFLLPGSSEDWEAALQKEESLTQI-FPVKF---YRHSCRW--TSICGPVRE 1000 Query 426 G-PTYYTDGGKKNKVGSLGFIVSTGEKFRKHEEGTNQQLELRAIEEALKQGPQTMNLVTD 484 TYYTDGGKK K + + G K GTNQQ EL+AI AL GP MN++TD Sbjct 1001 NLTTYYTDGGKKGKTAAAVYWCE-GRTKSKVFPGTNQQAELKAICMALLDGPPKMNIITD 1059 Query 485 SRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQNEEIDKYISEIF 544 SRYA+E +R E + I I +I K +GV WVP HKGI N E D Sbjct 1060 SRYAYEG-MREEPETWAREGIWLEIAKILPFKQYVGVGWVPAHKGIGGNTEAD------- 1111 Query 545 LAKEGEGILPKREEDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAA 604 EG+ E+ A PE + ++PG+ + + + + + Q + A Sbjct 1112 -----EGVKKALEQMAPCSP--PEAILLKPGEKQNLETGIYMQGLRPQSFL-----PRAD 1159 Query 605 KGVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKT 664 V G ++DS ++Q+ + N + I + F L Sbjct 1160 LPVAITGTMVDS----ELQLQLLNIGTEHIRIQKDEVFMTCFL----------------- 1198 Query 665 ERGEKGFGSTGMYWIENIPLAEEDHTKWHQDARSLHLEFEIPRTAAEDI 713 ENIP A EDH +WH L +F +P+ A++I Sbjct 1199 ---------------ENIPSATEDHERWHTSPDILVRQFHLPKRIAKEI 1232 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Simian immunodeficiency virus (PBJ/BC13 ISOLATE) (SOOTY MANGABEY)] Sequence ID: P19505.2 Length: 1449 Range 1: 606 to 1171 Score:351 bits(901), Expect:2e-104, Method:Compositional matrix adjust., Identities:228/575(40%), Positives:328/575(57%), Gaps:25/575(4%) Query 4 KVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKS- 62 KV LK G GP + QWPL++EK+ L EI +K+ ++G+L +APP NTP F IKKK Sbjct 606 KVTLKPGKDGPKLRQWPLSKEKIIALREICEKMEKDGQLEEAPPTNPYNTPTFAIKKKDK 665 Query 63 GKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYT 122 KWRMLIDFRELNK T+D TE QLG+PHP GL K++ +T+LD+GDAYF+IPL E +R+YT Sbjct 666 NKWRMLIDFRELNKVTQDFTEVQLGIPHPAGLAKRRRITVLDVGDAYFSIPLDEEFRQYT 725 Query 123 CFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIY 182 FTL S NN P KRY +KVLPQGWK SP+++Q TM+ +LE + + +P++ YMDDI Sbjct 726 AFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQHTMRNVLEPFRKANPDVTLIQYMDDIL 785 Query 183 IGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPE 242 I SD +H +V L + GF+ PEEK QK P +W+G+EL P WK QK LP+ Sbjct 786 IASDRTDLEHDRVVLQLKELLNSIGFSTPEEKFQKDPPFQWMGYELWPTKWKLQKIELPQ 845 Query 243 LTKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEAC 301 + T T+N +QKLVG L W I G ++ +L+ G L E + E+ E+E Sbjct 846 --RETWTVNDIQKLVGVLNWAAQIYPGIKTKHLCRLIRGKMTLTEEVQWTEMAEAEYEEN 903 Query 302 RKKL-EEMEGNYYNKDKDVYGQLAWG-DKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--Q 357 + L +E EG YY + K + + D Y ++QE K L V IKN + Sbjct 904 KIILSQEQEGCYYQEGKPLEATVIKSQDNQWSYKIHQED-KILKVGKFAKIKNTHTNGVR 962 Query 358 QVIKAAQKLTQEVIIRTGKIPWILLPGKEEDW-RLELQLGNITWMPKFWSCYRGHTRWRK 416 + QK+ +E I+ G++P LP + E W + +TW+P++ Sbjct 963 LLAHVVQKIGKEAIVIWGQVPRFHLPVEREIWEQWWTDYWQVTWIPEWDFVSTPPLVRLV 1022 Query 417 RNIIEEVVEGP-TYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 N+++E ++G T+Y DG ++++ G G++ G +K + E+ TNQQ EL A AL Sbjct 1023 FNLVKEPIQGAETFYVDGSCNRQSREGKAGYVTDRGRDKAKLLEQTTNQQAELEAFYLAL 1082 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 N++ DS+Y + E ++ + +I+E KK+ I V WVP HKGI Sbjct 1083 ADSGPKANIIVDSQYVMGIVAGQPTES--ESRLVNQIIEEMIKKEAIYVAWVPAHKGIGG 1140 Query 533 NEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 N+E+D +S+ +FL K I P +EE Y Sbjct 1141 NQEVDHLVSQGIRQVLFLEK----IEPAQEEHEKY 1171 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Simian immunodeficiency virus (F236/SMH4 ISOLATE) (SOOTY MANGABEY)] Sequence ID: P12502.2 Length: 1449 Range 1: 606 to 1171 Score:351 bits(900), Expect:3e-104, Method:Compositional matrix adjust., Identities:226/575(39%), Positives:328/575(57%), Gaps:25/575(4%) Query 4 KVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKS- 62 KV LK G GP + QWPL++EK+ L EI +K+ ++G+L +APP NTP F IKKK Sbjct 606 KVTLKPGKEGPKLRQWPLSKEKIIALREICEKMEKDGQLEEAPPTNPYNTPTFAIKKKDK 665 Query 63 GKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYT 122 KWRMLIDFRELNK T+D TE QLG+PHP GL K++ +T+LD+GDAYF+IPL E +R+YT Sbjct 666 NKWRMLIDFRELNKVTQDFTEVQLGIPHPAGLAKRRRITVLDVGDAYFSIPLDEEFRQYT 725 Query 123 CFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIY 182 FTL S NN P KRY +KVLPQGWK SP+++Q+TM+ +LE + + +P++ YMDDI Sbjct 726 AFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQYTMRNVLEPFRKANPDVTLIQYMDDIL 785 Query 183 IGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPE 242 I SD +H +V L + GF+ PEEK QK P +W+G+EL P WK QK LP+ Sbjct 786 IASDRTDLEHDRVVLQLKELLNGIGFSTPEEKFQKDPPFQWMGYELWPTKWKLQKIELPQ 845 Query 243 LTKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEAC 301 + T T+N +QKLVG L W I G ++ +L+ G L E + E+ E+E Sbjct 846 --RETWTVNDIQKLVGVLNWAAQIYPGIKTKHLCRLIRGKMTLTEEVQWTEMAEAEYEEN 903 Query 302 RKKL-EEMEGNYYNKDKDVYGQLAWG-DKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--Q 357 + L +E EG YY + K + + D Y ++QE K L V +KN + Sbjct 904 KIILSQEQEGCYYQEGKPIEATVIKSQDNQWSYKIHQED-KVLKVGKFAKVKNTHTNGVR 962 Query 358 QVIKAAQKLTQEVIIRTGKIPWILLPGKEEDW-RLELQLGNITWMPKFWSCYRGHTRWRK 416 + QK+ +E ++ G++P LP + E W + +TW+P + Sbjct 963 LLAHVVQKIGKEALVIWGEVPKFHLPVEREIWEQWWTDYWQVTWIPDWDFVSTPPLVRLV 1022 Query 417 RNIIEEVVEGP-TYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 N+++E ++G T+Y DG ++++ G G++ G +K + E+ TNQQ EL A AL Sbjct 1023 FNLVKEPIQGAETFYVDGSCNRQSREGKAGYVTDRGRDKAKLLEQTTNQQAELEAFYLAL 1082 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 N++ DS+Y + E ++ + +I+E KK+ I V WVP HKGI Sbjct 1083 ADSGPKANIIVDSQYVMGIIAGQPTES--ESRLVNQIIEEMIKKEAIYVAWVPAHKGIGG 1140 Query 533 NEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 N+E+D +S+ +FL K I P +EE Y Sbjct 1141 NQEVDHLVSQGIRQVLFLKK----IEPAQEEHEKY 1171 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (ISOLATE BEN)] Sequence ID: P18096.4 Length: 1550 Range 1: 620 to 1191 Score:351 bits(901), Expect:4e-104, Method:Compositional matrix adjust., Identities:236/584(40%), Positives:339/584(58%), Gaps:31/584(5%) Query 4 KVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKS- 62 KV LK G GP + QWPLT+EK++ L EI +K+ +EG+L +APP NTP F IKKK Sbjct 620 KVTLKPGKDGPRLKQWPLTKEKIEALKEICEKMEKEGQLEEAPPTNPYNTPTFAIKKKDK 679 Query 63 GKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYT 122 KWRMLIDFRELNK T+D TE QLG+PHP GL KKK ++ILD+GDAYF+IPL+E +R+YT Sbjct 680 NKWRMLIDFRELNKVTQDFTEIQLGIPHPAGLAKKKRISILDVGDAYFSIPLHEDFRQYT 739 Query 123 CFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIY 182 FTL + NN+ P KRY +KVLPQGWK SP+++Q+TM+++LE + + +P++ YMDDI Sbjct 740 AFTLPAVNNMEPGKRYIYKVLPQGWKGSPAIFQYTMRQVLEPFRKANPDVILIQYMDDIL 799 Query 183 IGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPE 242 I SD +H ++V L + GF+ P+EK QK P +W+G EL P WK QK LP+ Sbjct 800 IASDRTGLEHDKVVLQLKELLNGLGFSTPDEKFQKDPPFQWMGCELWPTKWKLQKLQLPQ 859 Query 243 LTKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEAC 301 K T+N +QKLVG L W I G ++ +L+ G L E + E+ E E Sbjct 860 --KDIWTVNDIQKLVGVLNWAAQIYSGIKTKHLCRLIRGKMTLTEEVQWTELAEAELEEN 917 Query 302 RKKL-EEMEGNYYNKDKDVYG--QLAWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP-- 356 + L +E EG YY ++K++ Q + G + Y ++QE+ K L V IKN Sbjct 918 KIILSQEQEGYYYQEEKELEATIQKSQGHQWT-YKIHQEE-KILKVGKYAKIKNTHTNGV 975 Query 357 QQVIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRLELQLGN---ITWMPKFWSCYRGHTR 413 + + + QK+ +E ++ G+IP LP + E W E N +TW+P++ Sbjct 976 RLLAQVVQKIGKEALVIWGRIPKFHLPVERETW--EQWWDNYWQVTWIPEWDFVSTPPLV 1033 Query 414 WRKRNIIEEVVEGP-TYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIE 469 N++ + + G T+YTDG +++K G G++ G +K + E+ TNQQ EL Sbjct 1034 RLTFNLVGDPIPGAETFYTDGSCNRQSKEGKAGYVTDRGKDKVKVLEQTTNQQAELEVFR 1093 Query 470 EALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKG 529 AL +N++ DS+Y + E +N I +I+E KK+ + V WVP HKG Sbjct 1094 MALADSGPKVNIIVDSQYVMGIVAGQPTES--ENRIVNQIIEEMIKKEAVYVAWVPAHKG 1151 Query 530 IPQNEEIDKYISE-----IFLAKEGEGILPKREEDAGYDLICPE 568 I N+E+D +S+ +FL K I P +EE Y I E Sbjct 1152 IGGNQEVDHLVSQGIRQVLFLEK----IEPAQEEHEKYHSIIKE 1191 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (ISOLATE D194)] Sequence ID: P17757.3 Length: 1462 Range 1: 619 to 1184 Score:350 bits(899), Expect:5e-104, Method:Compositional matrix adjust., Identities:230/577(40%), Positives:334/577(57%), Gaps:29/577(5%) Query 4 KVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKS- 62 KV LK G GP + QWPLT+EK++ L EI +K+ EG+L +APP NTP F IKKK Sbjct 619 KVTLKPGKDGPRLKQWPLTKEKIEALKEICEKMEREGQLEEAPPTNPYNTPTFAIKKKDK 678 Query 63 GKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYT 122 KWRMLIDFRELN+ T+D TE QLG+PHP GL KKK +T+LD+GDAYF+IPL+E +R+YT Sbjct 679 NKWRMLIDFRELNRVTQDFTEIQLGIPHPAGLAKKKRITVLDVGDAYFSIPLHEDFRQYT 738 Query 123 CFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIY 182 FTL S NN P KRY +KVLPQGWK SP+++QF M++ILE + + +P++ YMDDI Sbjct 739 AFTLPSVNNAEPEKRYVYKVLPQGWKGSPAIFQFMMRQILEPFRKANPDVILIQYMDDIL 798 Query 183 IGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPE 242 I SD +H ++V L + GF+ P+EK QK P +W+G+EL P WK QK LP+ Sbjct 799 IASDRTGLEHDKVVLQLKELLNGLGFSTPDEKFQKDPPFQWMGYELWPTKWKLQKIQLPQ 858 Query 243 LTKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEAC 301 K T+N +QKLVG L W I G ++ KL+ G L E + E+ E E Sbjct 859 --KEIWTVNDIQKLVGVLNWAAQIYPGIKTKHLCKLIRGKMTLTEEVQWTELAEAELEEN 916 Query 302 RKKL-EEMEGNYYNKDKDVYGQLAWG-DKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--Q 357 + L +E EG+YY +++++ + D Y ++Q + + L V IKN + Sbjct 917 KIILSQEQEGSYYQEEEELEATVIKSQDNQWAYKIHQGE-RVLKVGKYAKIKNTHTNGVR 975 Query 358 QVIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRLELQLGN---ITWMPKFWSCYRGHTRW 414 + + QK+ +E ++ G++P LP + + W E N +TW+P++ Sbjct 976 LLAQVVQKIGKEALVIWGRVPKFHLPVERDTW--EQWWDNYWQVTWVPEWDFVSTPPLVR 1033 Query 415 RKRNIIEEVVEGP-TYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEE 470 N++ + + G T+YTDG +++K G G++ G ++ R E+ +NQQ EL A Sbjct 1034 LTFNLVGDPIPGTETFYTDGSCNRQSKEGKAGYVTDRGRDRVRVLEQTSNQQAELEAFAM 1093 Query 471 ALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGI 530 AL +N++ DS+Y + E +N I +I+E KK+ + V WVP HKGI Sbjct 1094 ALADSGPKVNIIVDSQYVMGIVAGQPTES--ENRIVNQIIEDMIKKEAVYVAWVPAHKGI 1151 Query 531 PQNEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 N+E+D +S+ +FL K I P +EE Y Sbjct 1152 GGNQEVDHLVSQGIRQVLFLEK----IEPAQEEHEKY 1184 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (ISOLATE ST)] Sequence ID: P20876.3 Length: 1463 Range 1: 620 to 1185 Score:350 bits(898), Expect:5e-104, Method:Compositional matrix adjust., Identities:236/578(41%), Positives:331/578(57%), Gaps:31/578(5%) Query 4 KVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKS- 62 K+ LK G GP + QWPLT+EK++ L EI +K+ EG+L +APP NTP F IKKK Sbjct 620 KIMLKPGKDGPKLRQWPLTKEKIEALKEICEKMEREGQLEEAPPTNPYNTPTFAIKKKDK 679 Query 63 GKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYT 122 KWRMLIDFRELNK T+D TE QLG+PHP GL KKK +T+LD+GDAYF+IPL+E +R+YT Sbjct 680 NKWRMLIDFRELNKVTQDFTEIQLGIPHPAGLAKKKRITVLDVGDAYFSIPLHEDFRQYT 739 Query 123 CFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIY 182 FTL S NN P KRY +KV PQGWK SP+++Q+TM+++LE + + +P+I YMDDI Sbjct 740 AFTLPSINNAEPGKRYIYKVSPQGWKGSPAIFQYTMRQVLEPFRKANPDIILIQYMDDIL 799 Query 183 IGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPE 242 I SD +H +V L + GF+ P+EK QK P +W+G+EL P WK Q+ LP+ Sbjct 800 IASDRTDLEHDRVVLQLKELLNGLGFSTPDEKFQKDPPYQWMGYELWPTKWKLQRIQLPQ 859 Query 243 LTKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEAC 301 K T+N +QKLVG L W I G N+ +L+ G L E + E+ E E Sbjct 860 --KEVWTVNDIQKLVGVLNWAAQIYPGIKTRNLCRLIRGKMTLTEEVQWTELAEAELEEN 917 Query 302 RKKL-EEMEGNYYNKDKDVYGQLAWG-DKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--Q 357 + L +E EG YY ++K++ + D Y ++Q GK L V +KN + Sbjct 918 KIILSQEQEGCYYQEEKELEATVQKDQDNQWTYKIHQ-GGKILKVGKYAKVKNTHTNGVR 976 Query 358 QVIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRLELQLGN---ITWMPKFWSCYRGHTRW 414 + + QK+ +E ++ G+IP LP + + W E N +TW+P W Sbjct 977 LLAQVVQKIGKEALVIWGRIPKFHLPVERDTW--EQWWDNYWQVTWIPD-WDFISTPPLV 1033 Query 415 R-KRNIIEEVVEGP-TYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIE 469 R N++++ + G T+YTDG K+++ G G+I G +K R E+ TNQQ EL A Sbjct 1034 RLVFNLVKDPILGAETFYTDGSCNKQSREGKAGYITDRGRDKVRLLEQTTNQQAELEAFA 1093 Query 470 EALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKG 529 A+ N++ DS+Y + E K I +I+E KK+ I V WVP HKG Sbjct 1094 MAVTDSGPKANIIVDSQYVMGIVAGQPTESESK--IVNQIIEEMIKKEAIYVAWVPAHKG 1151 Query 530 IPQNEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 I N+E+D +S+ +FL K I P +EE Y Sbjct 1152 IGGNQEVDHLVSQGIRQVLFLEK----IEPAQEEHEKY 1185 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-2 B_EHO] Sequence ID: Q89928.3 Length: 1464 Range 1: 617 to 1183 Score:349 bits(896), Expect:1e-103, Method:Compositional matrix adjust., Identities:230/586(39%), Positives:332/586(56%), Gaps:45/586(7%) Query 3 TKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKS 62 KV+LK GP + QWPL++EK+ L EI +K+ +EG+L +APP N+P F IKKK Sbjct 617 VKVQLKPEKDGPKIRQWPLSKEKILALKEICEKMEKEGQLEEAPPTNPYNSPTFAIKKKD 676 Query 63 -GKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREY 121 KWRMLIDFRELNK T++ TE QLG+PHP GL KK +T+LD+GDAYF++PL +R+Y Sbjct 677 KNKWRMLIDFRELNKVTQEFTEVQLGIPHPAGLASKKRITVLDVGDAYFSVPLDPDFRQY 736 Query 122 TCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDI 181 T FTL + NN P KRY +KVLPQGWK SP+++Q+TM ++L+ + + + ++ YMDDI Sbjct 737 TAFTLPAVNNAEPGKRYLYKVLPQGWKGSPAIFQYTMAKVLDPFRKANNDVTIIQYMDDI 796 Query 182 YIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLP 241 + SD +H +V L + GF+ PEEK QK P KW+G+EL P+ WK QK LP Sbjct 797 LVASDRSDLEHDRVVSQLKELLNNMGFSTPEEKFQKDPPFKWMGYELWPKKWKLQKIQLP 856 Query 242 ELTKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEA 300 E K T+N +QKLVG L W + G +I KL+ G L E + E+ E++ Sbjct 857 E--KEVWTVNDIQKLVGVLNWAAQLFPGIKTRHICKLIRGKMTLTEEVQWTELAEAEFQE 914 Query 301 CRKKLE-EMEGNYYNK--------DKDVYGQLAW----GDKAIEYIVYQEKGKPLWVNVV 347 + LE E EG+YY + K++ Q + GDK ++ Y K K N V Sbjct 915 NKIILEQEQEGSYYKEGVPLEATVQKNLANQWTYKIHQGDKILKVGKY-AKVKNTHTNGV 973 Query 348 HNIKNLSIPQQVIKAAQKLTQEVIIRTGKIPWILLPGKEEDW-RLELQLGNITWMPKFWS 406 + ++ QK+ +E ++ G+IP LP + E W + +TW+P+ W Sbjct 974 RLLAHV---------VQKIGKEALVIWGEIPMFHLPVERETWDQWWTDYWQVTWIPE-WD 1023 Query 407 CYRGHTRWR-KRNIIEEVVEG-PTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQ 461 R N++++ +EG TYYTDG K +K G G++ G +K + E+ TNQ Sbjct 1024 FVSTPPLIRLAYNLVKDPLEGVETYYTDGSCNKASKEGKAGYVTDRGKDKVKPLEQTTNQ 1083 Query 462 QLELRAIEEALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGV 521 Q EL A AL+ +N++ DS+Y + E ++PI I+E KK++I V Sbjct 1084 QAELEAFALALQDSGPQVNIIVDSQYVMGIVAAQPTE--TESPIVREIIEEMIKKEKIYV 1141 Query 522 HWVPGHKGIPQNEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 WVP HKG+ N+E+D +S+ +FL K I P +EE Y Sbjct 1142 GWVPAHKGLGGNQEVDHLVSQGIRQILFLEK----IEPAQEEHEKY 1183 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (ISOLATE GHANA-1)] Sequence ID: P18042.4 Length: 1464 Range 1: 621 to 1186 Score:348 bits(894), Expect:2e-103, Method:Compositional matrix adjust., Identities:232/577(40%), Positives:334/577(57%), Gaps:29/577(5%) Query 4 KVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKS- 62 KV LK G GP + QWPLT+EK++ L EI +K+ +EG+L +APP NTP F IKKK Sbjct 621 KVTLKPGKDGPRLRQWPLTKEKIEALREICEKMEKEGQLEEAPPTNPYNTPTFAIKKKDK 680 Query 63 GKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYT 122 KWRMLIDFRELN+ T+D TE QLG+PHP GL KKK +T+LD+GDAYF+IPL+E +R+YT Sbjct 681 NKWRMLIDFRELNRVTQDFTEIQLGIPHPAGLAKKKRITVLDVGDAYFSIPLHEDFRQYT 740 Query 123 CFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIY 182 FTL S NN P KRY +KVLPQGWK SP+++Q TM+++LE + + +P++ YMDDI Sbjct 741 AFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQHTMRQVLEPFRKANPDVILIQYMDDIL 800 Query 183 IGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPE 242 I SD +H ++V L + GF+ P+EK QK P +W+G+EL P WK QK LP+ Sbjct 801 IASDRTGLEHDKVVLQLKELLNGLGFSTPDEKFQKDPPLQWMGYELWPTKWKLQKLQLPQ 860 Query 243 LTKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEAC 301 K T+N +QKLVG L W I G ++ +L++G L E + E+ E E Sbjct 861 --KEIWTVNDIQKLVGVLNWAAQIYPGIKTKHLCRLIKGKMTLTEEVQWTELAEAELEEN 918 Query 302 RKKL-EEMEGNYYNKDKDVYGQLAWG-DKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--Q 357 + L +E EG YY ++K++ + D Y ++QE+ K L V IKN + Sbjct 919 KIILSQEQEGYYYQEEKELEATIQKNQDNQWTYKIHQEE-KILKVGKYAKIKNTHTNGVR 977 Query 358 QVIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRLELQLGN---ITWMPKFWSCYRGHTRW 414 + + QK+ +E ++ G+IP LP + E W E N +TW+P++ Sbjct 978 LLAQVVQKIGKEALVIWGRIPKFHLPVERETW--EQWWDNYWQVTWIPEWDFVSTPPLVR 1035 Query 415 RKRNIIEEVVEGP-TYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEE 470 N++ + + G T+YTDG +++K G ++ G +K R E TNQQ EL A Sbjct 1036 LTFNLVGDPIPGAETFYTDGSCNRQSKEGKARYVTDRGRDKVRVLERTTNQQAELEAFAM 1095 Query 471 ALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGI 530 L +N++ DS+Y ++ E ++ I +I+E KK+ + V WVP HKGI Sbjct 1096 TLTDSGPKVNIIVDSQYVMGIVVGQPTES--ESRIVNQIIEDMIKKEAVYVAWVPAHKGI 1153 Query 531 PQNEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 N+E+D +S+ +FL E I P +EE Y Sbjct 1154 GGNQEVDHLVSQGIRQVLFL----ERIEPAQEEHEKY 1186 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (ISOLATE NIH-Z)] Sequence ID: P05962.3 Length: 1461 Range 1: 618 to 1183 Score:348 bits(894), Expect:2e-103, Method:Compositional matrix adjust., Identities:233/579(40%), Positives:333/579(57%), Gaps:33/579(5%) Query 4 KVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKS- 62 K+ LK G GP + QWPLT+EK++ L EI +K+ +EG+L +APP NTP F IKKK Sbjct 618 KIMLKPGKDGPRLKQWPLTKEKIEALKEICEKMEKEGQLEEAPPTNPYNTPTFAIKKKDK 677 Query 63 GKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYT 122 KWRMLIDFRELNK T+D TE QLG+PHP GL KK+ +T+LD+GDAYF+IPL+E +R+YT Sbjct 678 NKWRMLIDFRELNKVTQDFTEIQLGIPHPAGLAKKRRITVLDVGDAYFSIPLHEDFRQYT 737 Query 123 CFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIY 182 FTL S NN P KRY +KVLPQGWK SP+++Q+TM++ILE + + + ++ YMDDI Sbjct 738 AFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQYTMRQILEPFRKANEDVIIIQYMDDIL 797 Query 183 IGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPE 242 I SD +H ++V L + GF+ P+EK QK P +W+G+EL P WK QK LP+ Sbjct 798 IASDRTDLEHDKVVLQLKELLNGLGFSTPDEKFQKDPPYRWMGYELWPTKWKLQKIQLPQ 857 Query 243 LTKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEAC 301 K T+N +QKLVG L W I G ++ +L+ G L E + E+ E E Sbjct 858 --KEVWTVNDIQKLVGVLNWAAQIYPGIKTKHLCRLIRGKMTLTEEVQWTELAEAELEEN 915 Query 302 RKKL-EEMEGNYYNKDKDVYGQLAWG-DKAIEYIVYQE----KGKPLWVNVVHNIKNLSI 355 R L ++ EG+YY ++K + + D Y V+Q KG + + + + + + Sbjct 916 RIILSQKQEGHYYQEEKKLEATVQKDQDNQWTYKVHQGEKILKGGKICKDKKYPYQRVRL 975 Query 356 PQQVIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRLELQLGN---ITWMPKFWSCYRGHT 412 QV+ QK+ +E ++ G+IP LP + + W E N +TW+P + Sbjct 976 LAQVV---QKIGKEALVIWGRIPKFHLPVERDTW--EQWWDNYWQVTWIPDWDFVSTPPL 1030 Query 413 RWRKRNIIEEVVEGP-TYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAI 468 N++ E V G T+YTDG +++K G G+I G ++ + E+ TNQQ EL A Sbjct 1031 VRLAFNLVGEPVPGAETFYTDGSCNRQSKEGKAGYITDRGRDRVKVLEQTTNQQAELEAF 1090 Query 469 EEALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHK 528 AL N++ DS+Y + E +N I +I+E KK+ I V WVP HK Sbjct 1091 AMALTDSGPKANIIVDSQYVMGIVAGQPTES--ENRIVNQIIEEMIKKEAIYVAWVPAHK 1148 Query 529 GIPQNEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 GI N+E+D +S+ +FL K I P +EE Y Sbjct 1149 GIGGNQEVDHLVSQGIRQVLFLEK----IEPAQEEHEKY 1183 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (ISOLATE CAM2)] Sequence ID: P24107.3 Length: 1462 Range 1: 620 to 1184 Score:348 bits(894), Expect:2e-103, Method:Compositional matrix adjust., Identities:232/577(40%), Positives:334/577(57%), Gaps:30/577(5%) Query 4 KVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKS- 62 K+ LK G GP + QWPLT+EK++ L EI +K+ +EG+L +APP NTP F I+KK Sbjct 620 KIMLKPGKDGPRLRQWPLTKEKIEALKEICEKMEKEGQLEEAPPTNPYNTPTFAIRKKDK 679 Query 63 GKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYT 122 KWRMLIDFRELNK T+D TE QLG+PHP GL KK+ +T+LD+GDAYF+IPL+E +R+YT Sbjct 680 NKWRMLIDFRELNKVTQDFTEIQLGIPHPAGLAKKRRITVLDVGDAYFSIPLHEDFRQYT 739 Query 123 CFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIY 182 FTL S NN P KRY +KVLPQGWK SP+++Q+TM+++LE + + + ++ YMDDI Sbjct 740 AFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQYTMRQVLEPFRKANSDVIIIQYMDDIL 799 Query 183 IGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPE 242 I SD +H ++V L + GF+ P+EK QK P +W+G+EL P WK QK LP+ Sbjct 800 IASDRTDLEHDKVVLQLKELLNNLGFSTPDEKFQKDPPYRWMGYELWPTKWKLQKIQLPQ 859 Query 243 LTKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEAC 301 K T+N +QKLVG L W I G ++ +L+ G L E + E+ E E Sbjct 860 --KEVWTVNDIQKLVGVLNWAAQIYPGIKTKHLCRLIRGKMTLTEEVQWTELAEAELEEN 917 Query 302 RKKL-EEMEGNYYNKDKDVYGQLAWG-DKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--Q 357 R L +E EG+YY ++K++ + D Y ++QE+ K L V IK+ + Sbjct 918 RIILSQEQEGHYYQEEKELEATVQKDQDNQWTYKIHQEE-KILKVGKYAKIKHTHTNGVK 976 Query 358 QVIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRLELQLGN---ITWMPKFWSCYRGHTRW 414 + + QK+ +E ++ G+IP LP + E W E N +TW+P + Sbjct 977 LLAQVVQKIGKEALV-IGRIPKFHLPVEREVW--EQWWDNYWQVTWIPDWDFVSTPPLVR 1033 Query 415 RKRNIIEEVVEGP-TYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEE 470 N++ + + G T+YTDG +++K G G++ G +K + E+ TNQQ EL A Sbjct 1034 LAFNLVGDPIPGTETFYTDGSCNRQSKEGKAGYVTDRGRDKVKILEQTTNQQAELEAFAM 1093 Query 471 ALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGI 530 AL N++ DS+Y + E +N I +I+E KK+ I V WVP HKGI Sbjct 1094 ALTDSGPKANIIVDSQYVMGIVAGQPTES--ENRIVNQIIEEMIKKEAIYVAWVPAHKGI 1151 Query 531 PQNEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 N+E+D +S+ +FL K I P +EE Y Sbjct 1152 GGNQEVDHLVSQGIRQVLFLEK----IEPAQEEHEKY 1184 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-2 B_UC1] Sequence ID: Q76634.3 Length: 1471 Range 1: 619 to 1185 Score:347 bits(889), Expect:1e-102, Method:Compositional matrix adjust., Identities:227/579(39%), Positives:330/579(56%), Gaps:31/579(5%) Query 3 TKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKS 62 KVKLK G GP + QWPL++EK+ L EI +K+ +EG+L +APP NTP F IKK+ Sbjct 619 VKVKLKPGKDGPKIRQWPLSKEKILALKEICEKMEKEGQLEEAPPTNPYNTPTFAIKKRD 678 Query 63 -GKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREY 121 KWRMLIDFRELNK T+D TE QLG+PHP GL +K+ +T+LD+GDAYF+IPL +R+Y Sbjct 679 KNKWRMLIDFRELNKVTQDFTEVQLGIPHPAGLAEKRRITVLDVGDAYFSIPLDPNFRQY 738 Query 122 TCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDI 181 T FTL S NN P KRY +KVLPQGWK SP+++Q++M+++L+ + + + ++ YMDDI Sbjct 739 TAFTLPSINNAEPGKRYIYKVLPQGWKGSPAIFQYSMRKVLDPFRKANSDVIIIQYMDDI 798 Query 182 YIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLP 241 I SD +H +V L + GF+ PEEK QK P KW+G+EL P+ WK QK LP Sbjct 799 LIASDRSDLEHDRVVSQLKELLNDMGFSTPEEKFQKDPPFKWMGYELWPKRWKLQKIQLP 858 Query 242 ELTKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEA 300 E K T+N +QKLVG L W + G +I KL+ G L E + E+ E + Sbjct 859 E--KEVWTVNDIQKLVGVLNWAAQLFPGIKTRHICKLIRGKMTLTEEVQWTELAEAELQE 916 Query 301 CRKKLE-EMEGNYYNK----DKDVYGQLAWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSI 355 + LE E EG+YY + + V LA Y ++Q + L V +KN Sbjct 917 NKIILEQEQEGSYYKEGVPLEATVQKNLA---NQWTYKIHQ-GNRILKVGKYAKVKNTHT 972 Query 356 P--QQVIKAAQKLTQEVIIRTGKIPWILLPGKEEDW-RLELQLGNITWMPKFWSCYRGHT 412 + + QK+ +E ++ G+IP LP + E W + +TW+P++ Sbjct 973 NGVRLLAHVVQKIGKEALVIWGEIPVFHLPVERETWDQWWTDYWQVTWIPEWDFVSTPPL 1032 Query 413 RWRKRNIIEEVVEG-PTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAI 468 N++++ +E TYYTDG + +K G G++ G +K + E+ TNQQ EL A Sbjct 1033 VRLAYNLVKDPLEKVETYYTDGSCNRASKEGKAGYVTDRGKDKVKVLEQTTNQQAELEAF 1092 Query 469 EEALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHK 528 AL+ +N++ DS+Y + E ++P+ +I+E KK+ I V WVP H+ Sbjct 1093 ALALQDSGPQVNIIVDSQYVMGIVAGQPTE--TESPLVNQIIEEMIKKEAIYVGWVPAHR 1150 Query 529 GIPQNEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 G+ N+E+D +S+ +FL K I P +EE Y Sbjct 1151 GLGGNQEVDHLVSQGIRQVLFLEK----IEPAQEEHEKY 1185 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (isolate KR)] Sequence ID: Q74120.3 Length: 1463 Range 1: 620 to 1185 Score:346 bits(888), Expect:1e-102, Method:Compositional matrix adjust., Identities:235/577(41%), Positives:328/577(56%), Gaps:29/577(5%) Query 4 KVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKS- 62 KV LK G GP V QWPLT+EK++ L EI +K+ EG+L +APP NTP F IKKK Sbjct 620 KVILKPGKDGPKVRQWPLTKEKIEALKEICEKMEREGQLEEAPPTNPYNTPTFAIKKKDK 679 Query 63 GKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYT 122 KWRMLIDFRELNK T++ TE QLG+PHP GL KK+ +T+LDIGDAYF+IPL+E +R+YT Sbjct 680 NKWRMLIDFRELNKVTQEFTEIQLGIPHPAGLAKKRRITVLDIGDAYFSIPLHEDFRQYT 739 Query 123 CFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIY 182 FTL + NN P KRY +KVLPQGWK SP+++Q TM+++LE + + +P++ YMDDI Sbjct 740 AFTLPTVNNAEPGKRYIYKVLPQGWKGSPAIFQHTMRQVLEPFRKANPDVILVQYMDDIL 799 Query 183 IGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPE 242 I SD +H V L + GF+ P+EK QK P KW+G+EL P WK QK LP+ Sbjct 800 IASDRTDLEHDRTVLQLKELLNGLGFSTPDEKFQKDPPYKWMGYELWPTKWKLQKIQLPQ 859 Query 243 LTKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEAC 301 K T+N +QKLVG L W I G ++ +L+ G L E + E+ E E Sbjct 860 --KEVWTVNDIQKLVGVLNWAAQIYPGIKTKHLCRLIRGKMTLTEEVQWTELAEAELEEN 917 Query 302 RKKL-EEMEGNYYNKDKDVYGQLAWG-DKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--Q 357 + L +E EG YY ++K++ + D Y ++Q + K L V IKN + Sbjct 918 KIILSQEQEGCYYQEEKELEATVQKDQDNQWTYKIHQGE-KILKVGKYAKIKNTHTNGVR 976 Query 358 QVIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRLELQLGN---ITWMPKFWSCYRGHTRW 414 + QK+ +E ++ G+IP LP + E W E N +TW+P + Sbjct 977 LLAHVVQKIGKEALVIWGRIPKFHLPVERETW--EQWWDNYWQVTWIPDWDFVSTPPLVR 1034 Query 415 RKRNIIEEVVEG-PTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEE 470 N++++ + G T+YTDG +++K G G+I G +K R E+ TNQQ EL A Sbjct 1035 LAFNLVKDPIPGEETFYTDGSCNRQSKEGKAGYITDRGRDKVRILEQTTNQQAELEAFAM 1094 Query 471 ALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGI 530 AL N++ DS+Y + E K + +I+E KK+ + V WVP HKGI Sbjct 1095 ALTDSGPKANIIVDSQYVMGIVAGQPTESESK--LVNQIIEEMIKKETLYVAWVPAHKGI 1152 Query 531 PQNEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 N+E+D +S+ +FL K I P +EE Y Sbjct 1153 GGNQEVDHLVSQGIRQVLFLEK----IEPAQEEHEKY 1185 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (ISOLATE ROD)] Sequence ID: P04584.3 Length: 1464 Range 1: 621 to 1186 Score:345 bits(886), Expect:3e-102, Method:Compositional matrix adjust., Identities:232/577(40%), Positives:330/577(57%), Gaps:29/577(5%) Query 4 KVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKS- 62 K+ LK G GP + QWPLT+EK++ L EI +K+ +EG+L +APP NTP F IKKK Sbjct 621 KIMLKPGKDGPKLRQWPLTKEKIEALKEICEKMEKEGQLEEAPPTNPYNTPTFAIKKKDK 680 Query 63 GKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYT 122 KWRMLIDFRELNK T+D TE QLG+PHP GL KK+ +T+LD+GDAYF+IPL+E +R YT Sbjct 681 NKWRMLIDFRELNKVTQDFTEIQLGIPHPAGLAKKRRITVLDVGDAYFSIPLHEDFRPYT 740 Query 123 CFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIY 182 FTL S NN P KRY +KVLPQGWK SP+++Q TM+++LE + + + ++ YMDDI Sbjct 741 AFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQHTMRQVLEPFRKANKDVIIIQYMDDIL 800 Query 183 IGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPE 242 I SD +H +V L + GF+ P+EK QK P W+G+EL P WK QK LP+ Sbjct 801 IASDRTDLEHDRVVLQLKELLNGLGFSTPDEKFQKDPPYHWMGYELWPTKWKLQKIQLPQ 860 Query 243 LTKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEAC 301 K T+N +QKLVG L W + G ++ +L+ G L E + E+ E E Sbjct 861 --KEIWTVNDIQKLVGVLNWAAQLYPGIKTKHLCRLIRGKMTLTEEVQWTELAEAELEEN 918 Query 302 RKKL-EEMEGNYYNKDKDVYGQLAWG-DKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--Q 357 R L +E EG+YY ++K++ + + Y ++QE+ K L V +KN + Sbjct 919 RIILSQEQEGHYYQEEKELEATVQKDQENQWTYKIHQEE-KILKVGKYAKVKNTHTNGIR 977 Query 358 QVIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRLELQLGN---ITWMPKFWSCYRGHTRW 414 + + QK+ +E ++ G+IP LP + E W E N +TW+P + Sbjct 978 LLAQVVQKIGKEALVIWGRIPKFHLPVEREIW--EQWWDNYWQVTWIPDWDFVSTPPLVR 1035 Query 415 RKRNIIEEVVEGP-TYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEE 470 N++ + + G T+YTDG +++K G G++ G +K +K E+ TNQQ EL A Sbjct 1036 LAFNLVGDPIPGAETFYTDGSCNRQSKEGKAGYVTDRGKDKVKKLEQTTNQQAELEAFAM 1095 Query 471 ALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGI 530 AL +N++ DS+Y E K I +I+E KK+ I V WVP HKGI Sbjct 1096 ALTDSGPKVNIIVDSQYVMGISASQPTESESK--IVNQIIEEMIKKEAIYVAWVPAHKGI 1153 Query 531 PQNEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 N+E+D +S+ +FL K I P +EE Y Sbjct 1154 GGNQEVDHLVSQGIRQVLFLEK----IEPAQEEHEKY 1186 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Simian immunodeficiency virus (AGM155 ISOLATE)] Sequence ID: P27973.2 Length: 1470 Range 1: 620 to 1167 Score:335 bits(859), Expect:1e-98, Method:Compositional matrix adjust., Identities:217/555(39%), Positives:319/555(57%), Gaps:20/555(3%) Query 1 PITKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKK 60 PIT V+LKEG GP + QWPL++EK+ L EI L EEGKL + NTP+FCI+K Sbjct 620 PITPVRLKEGARGPRLKQWPLSKEKIIALQEICKTLEEEGKLSRVGGDNAYNTPVFCIRK 679 Query 61 KS-GKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYR 119 K +WRML+DFRELNK T+D E QLG+PHP GL+K K +TI+D+GDAY++IPL +R Sbjct 680 KDKSQWRMLVDFRELNKATQDFFEVQLGIPHPAGLKKMKQITIIDVGDAYYSIPLDPEFR 739 Query 120 EYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMD 179 +YT FT+ + NN GP RY + LPQGWK SP+++Q T +ILE+ ++ ++ YMD Sbjct 740 KYTAFTIPTVNNEGPGIRYQFNCLPQGWKGSPTIFQNTASKILEEIKKELKQLTIVQYMD 799 Query 180 DIYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHT 239 D+++GS E KH ++V+ L N + ++G PE+K Q+ P +W+G++L P WK Q Sbjct 800 DLWVGSQEEGPKHDQLVQTLRNRLQEWGLETPEKKVQREPPFEWMGYKLWPHKWKLQSIE 859 Query 240 LPELTKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEW 298 L + K T+N LQKLVG+L W + G NI KL+ G + L + E+ Sbjct 860 LEK--KEQWTVNDLQKLVGKLNWAAQLYPGLRTKNICKLLRGKKNLLDVVEWTPEAEAEY 917 Query 299 EACRKKLE-EMEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP 356 E ++ L+ E EG YY +K + + GD Y QE GK L V K Sbjct 918 EENKEILKTEQEGTYYAPEKPLRAAVQKLGDGQWSYQFKQE-GKILKVGKFAKQKATHTN 976 Query 357 QQVIKAA--QKLTQEVIIRTGKIPWILLPGKEEDW-RLELQLGNITWMPK--FWSCYRGH 411 + + A QK+ +E ++ G++P LP + + W + ++W+P+ F S Sbjct 977 ELRVLAGVVQKIGKEALVIWGQLPTFELPVERDTWEQWWADYWQVSWIPEWDFVSVPPLV 1036 Query 412 TRWRKRNIIEEVVEG-PTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRA 467 T W + +E + G YY DG +++K G G+I G ++ ++ E TNQQ EL A Sbjct 1037 TLW--YTLTKEPIPGEDVYYVDGACNRQSKEGKAGYITQQGKQRVQQLENTTNQQAELTA 1094 Query 468 IEEALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGH 527 I+ AL+ +N+VTDS+YA L + +P+ +I+ +K+ I + WVP H Sbjct 1095 IKMALEDSGPKVNIVTDSQYAMGILTAQPTQS--DSPLVEQIIAQMVQKEAIYLQWVPAH 1152 Query 528 KGIPQNEEIDKYISE 542 KGI NEEIDK +S+ Sbjct 1153 KGIGGNEEIDKLVSK 1167 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Simian immunodeficiency virus (isolate AGM / clone GRI-1)] Sequence ID: Q02836.2 Length: 1472 Range 1: 617 to 1163 Score:329 bits(843), Expect:2e-96, Method:Compositional matrix adjust., Identities:204/552(37%), Positives:316/552(57%), Gaps:17/552(3%) Query 3 TKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKS 62 TKV+LKEG GP + QWPL+ EK++ LTEI ++ EEGKL + NTP+F IKKK Sbjct 617 TKVQLKEGKDGPKLKQWPLSREKIEALTEICKQMEEEGKLSRIGGENPYNTPVFAIKKKD 676 Query 63 -GKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREY 121 +WRML+DFRELNK T+D E QLG+PHP GLQKKK +T++DIGDAY++IPL + +R+Y Sbjct 677 KTQWRMLVDFRELNKATQDFFEVQLGIPHPAGLQKKKQITVIDIGDAYYSIPLCKEFRKY 736 Query 122 TCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDI 181 T FT+ S NN GP RY + LPQGWK SP+++Q T ILE+ + P ++ YMDD+ Sbjct 737 TAFTIPSVNNTGPGIRYQFNCLPQGWKGSPTIFQNTAANILEEIKRHTPGLEIVQYMDDL 796 Query 182 YIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLP 241 ++ SD + +H + V + + + G P++K Q+ P +W+G++LHP W K LP Sbjct 797 WLASDHDETRHNQQVDIVRKMLLEKGLETPDKKVQREPPWEWMGYKLHPNKWTINKIELP 856 Query 242 ELTKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEA 300 L +G T+NK+QK+VG L W I G + ++ G + L E E E++ Sbjct 857 PL-EGEWTVNKIQKVVGVLNWASQIYPGIKTKHTCAMLRGKKNLLEEIVWTEEAEAEYKN 915 Query 301 CRKKLEEM-EGNYYNKDKDVYGQLAWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--Q 357 + ++E EG YY+ K++ + + + ++G L V + + Sbjct 916 NQGIVQETQEGTYYDPLKELIATVQKQGEGQWTYQFTQEGAVLKVGRYAKQRETHTNDLR 975 Query 358 QVIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRLELQ-LGNITWMP--KFWSCYRGHTRW 414 + QK+ +E + G++P + LP ++ W + Q ++W+P +F S W Sbjct 976 TLAHLVQKICKEALTIWGRLPRVQLPVDKKTWDMWWQDYWQVSWIPEWEFVSTPLLVKLW 1035 Query 415 RKRNIIEEVVEG-PTYYTDGG--KKNKVGSLGFIVSTGE-KFRKHEEGTNQQLELRAIEE 470 ++++E ++G YY DG K K+G G++ G+ + R+ E TNQQ EL A++ Sbjct 1036 --YSLVKEPIKGEDVYYVDGAASKVTKLGKAGYLSERGKSRIRELENTTNQQAELTAVKM 1093 Query 471 ALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGI 530 AL+ + +N+VTDS+Y L E +P+ +I++ KK ++ + WVP HKGI Sbjct 1094 ALEDSGENVNIVTDSQYVMNILTACPQES--NSPLVEQIIQALMKKRQVYLQWVPAHKGI 1151 Query 531 PQNEEIDKYISE 542 N EIDK +S+ Sbjct 1152 GGNTEIDKLVSK 1163 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (ISOLATE D205,7)] Sequence ID: P15833.3 Length: 1465 Range 1: 619 to 1184 Score:324 bits(831), Expect:8e-95, Method:Compositional matrix adjust., Identities:225/580(39%), Positives:322/580(55%), Gaps:34/580(5%) Query 3 TKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKS 62 KV+LK G GP + QWPL+ EK+ L EI +K+ +EG+L +APP NTP F IKKK Sbjct 619 VKVELKPGKDGPKIRQWPLSREKILALKEICEKMEKEGQLEEAPPTNPYNTPTFAIKKKD 678 Query 63 -GKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREY 121 KWRMLIDFRELNK T+D TE P + +K+ +T++D+GDAYF+IPL +R+Y Sbjct 679 KNKWRMLIDFRELNKVTQDFTEVNWVFPT-RQVAEKRRITVIDVGDAYFSIPLDPNFRQY 737 Query 122 TCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDI 181 T FTL S NN P KRY +KVLPQGWK S S+ Q++M+++L+ + + + ++ YMDDI Sbjct 738 TAFTLPSVNNAEPGKRYIYKVLPQGWKGSQSICQYSMRKVLDPFRKANSDVIIIQYMDDI 797 Query 182 YIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLP 241 I SD +H +V L + GF+ PEEK QK P KW+G+EL P+ WK QK LP Sbjct 798 LIASDRSDLEHDRVVSQLKELLNDMGFSTPEEKFQKDPPFKWMGYELWPKKWKLQKIQLP 857 Query 242 ELTKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEA 300 E K T+N +QKLVG L W + G +I KL+ G L E + E+ E + Sbjct 858 E--KEVWTVNAIQKLVGVLNWAAQLFPGIKTRHICKLIRGKMTLTEEVQWTELAEAELQE 915 Query 301 CRKKLE-EMEGNYYNK----DKDVYGQLAWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSI 355 + LE E EG+YY + + V LA Y ++Q K L V +KN Sbjct 916 NKIILEQEQEGSYYKERVPLEATVQKNLA---NQWTYKIHQ-GNKVLKVGKYAKVKNTHT 971 Query 356 P--QQVIKAAQKLTQEVIIRTGKIPWILLPGKEEDW-RLELQLGNITWMPKFWSCYRGHT 412 + + QK+ +E ++ G+IP LP + E W + +TW+P+ W Sbjct 972 NGVRLLAHVVQKIGKEALVIWGEIPVFHLPVERETWDQWWTDYWQVTWIPE-WDFVSTPP 1030 Query 413 RWR-KRNIIEEVVEG-PTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRA 467 R N++++ +EG TYYTDG + +K G G++ G +K + E+ TNQQ EL A Sbjct 1031 LIRLAYNLVKDPLEGRETYYTDGSCNRTSKEGKAGYVTDRGKDKVKVLEQTTNQQAELEA 1090 Query 468 IEEALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGH 527 AL +N++ DS+Y + E ++PI A+I+E KK+ + V WVP H Sbjct 1091 FALALTDSEPQVNIIVDSQYVMGIIAAQPTE--TESPIVAKIIEEMIKKEAVYVGWVPAH 1148 Query 528 KGIPQNEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 KG+ N+E+D +S+ +FL K I P +EE Y Sbjct 1149 KGLGGNQEVDHLVSQGIRQVLFLEK----IEPAQEEHEKY 1184 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Simian immunodeficiency virus (AGM3 ISOLATE)] Sequence ID: P27980.2 Length: 1465 Range 1: 621 to 1178 Score:317 bits(811), Expect:5e-92, Method:Compositional matrix adjust., Identities:208/563(37%), Positives:313/563(55%), Gaps:21/563(3%) Query 1 PITKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKK 60 PIT VKLKEG GP + QWPL++EK+K L EI D+L +EGK+ K NTP+FCIKK Sbjct 621 PITPVKLKEGARGPFLKQWPLSKEKIKALQEICDQLEKEGKISKIGGENAYNTPVFCIKK 680 Query 61 KS-GKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYR 119 K +WRML+DFRELNK T+D E QLG+PHP G +K +T+LDIGDAY++IPL +R Sbjct 681 KDKSQWRMLVDFRELNKATQDFFEVQLGIPHPSGFEKMTEITVLDIGDAYYSIPLDPEFR 740 Query 120 EYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMD 179 +YT FT+ S NN GP RY + LPQGWK SP+++Q T ILE+ ++ + YMD Sbjct 741 KYTAFTIPSVNNQGPGTRYQFNCLPQGWKGSPTIFQNTAASILEEIKKELKPLTIVQYMD 800 Query 180 DIYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHT 239 D+++GS + H +V+ L ++ +G P++K QK P +W+G++L P W+ Sbjct 801 DLWVGSQEDEYTHDRLVEQLRMKLSAWGLETPDKKVQKKPPYEWMGYKLWPHKWQISSIE 860 Query 240 LPELTKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEW 298 L + K T+N +Q+LVG+L W + G N+ KL+ G + L E E+ Sbjct 861 LED--KEEWTVNDIQRLVGKLNWAAQLYPGLRTKNLCKLIRGKKNLLETVTWTEEAEAEY 918 Query 299 EACRKKLE-EMEGNYYNKDKDVYGQLAWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIPQ 357 ++ L+ E EG YY + + + + ++++G+ L V KN + Sbjct 919 AENKEILKTEQEGTYYKPGRPIRAAVQKLEGGQWSYQFKQEGQVLKVGKYTKQKNTHTNE 978 Query 358 QVIKAA--QKLTQEVIIRTGKIPWILLPGKEEDW-RLELQLGNITWMP--KFWSCYRGHT 412 + A QKL +E ++ G++P + LP + E W + ++W+P +F S Sbjct 979 FRVLAGLVQKLCKESLVIWGELPVLELPIEREVWEQWWADYWQVSWIPDWEFVSTPPLVK 1038 Query 413 RWRKRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIE 469 W E + + YY DG + ++ G G+I G ++ K E TNQQ EL AI+ Sbjct 1039 LWYTLT-KEPIPKEDVYYVDGACNRNSREGKAGYITQYGKQRVEKLENTTNQQAELMAIK 1097 Query 470 EALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKG 529 AL+ +N+VTDS+YA L + +P+ +I+ + +K +I + WVP KG Sbjct 1098 MALEDSGPNVNIVTDSQYAMGILTAQPTQS--DSPLIEQIIALMVQKHQIYLQWVPADKG 1155 Query 530 IPQNEEIDKYISE-----IFLAK 547 I NEEIDK +S+ +FL K Sbjct 1156 IGGNEEIDKLVSQGMRKILFLEK 1178 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Simian immunodeficiency virus (TYO-1 ISOLATE)] Sequence ID: P05895.2 Length: 1467 Range 1: 624 to 1180 Score:308 bits(789), Expect:5e-89, Method:Compositional matrix adjust., Identities:207/564(37%), Positives:305/564(54%), Gaps:24/564(4%) Query 1 PITKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKK 60 P+T VKLKEG GP V QWPL++EK++ L EI +L +EGK+ + NTPIFCIKK Sbjct 624 PVTPVKLKEGARGPCVRQWPLSKEKIEALQEICSQLEQEGKISRVGGENAYNTPIFCIKK 683 Query 61 KS-GKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYR 119 K +WRML+DFRELNK T+D E QLG+PHP GL+K + +T+LD+GDAY++IPL +R Sbjct 684 KDKSQWRMLVDFRELNKATQDFFEVQLGIPHPAGLRKMRQITVLDVGDAYYSIPLDPNFR 743 Query 120 EYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMD 179 +YT FT+ + NN GP RY + LPQGWK SP+++Q T ILE+ + P + YMD Sbjct 744 KYTAFTIPTVNNQGPGIRYQFNCLPQGWKGSPTIFQNTAASILEEIKRNLPALTIVQYMD 803 Query 180 DIYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHT 239 D+++GS H ++V+ L + +G PE+K QK P +W+G++L P W+ + Sbjct 804 DLWVGSQENEHTHDKLVEQLRTKLQAWGLETPEKKMQKEPPYEWMGYKLWPHKWELSRIQ 863 Query 240 LPELTKGTITLNKLQKLVGELVWRQSIIGKSIPNILKLMEGDR----ELQSERKIEEVHV 295 L E K T+N +QKLVG+L W + I KL+ G + EL + E Sbjct 864 LEE--KDEWTVNDIQKLVGKLNWAAQLYPGLKTRICKLITGGKKNLLELVAWTPEAEAEY 921 Query 296 KEWEACRKKLEEMEGNYYNKDKDVYGQLAWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSI 355 E K E EG YY + + + ++++G+ L V KN Sbjct 922 AENAEILKT--EQEGTYYKPGIPIRAAVQKLEGGQWSYQFKQEGQVLKVGKYTKQKNTHT 979 Query 356 PQQVIKAA--QKLTQEVIIRTGKIPWILLPGKEEDW-RLELQLGNITWMPK--FWSCYRG 410 + A QK+ +E ++ G +P + LP + E W + ++W+P+ F S Sbjct 980 NELRTLAGLVQKICKEALVIWGILPVLELPIEREVWEQWWADYWQVSWIPEWDFVSTPPL 1039 Query 411 HTRWRKRNIIEEVVEGPTYYTDGGKKN-KVGSLGFIVSTG-EKFRKHEEGTNQQLELRAI 468 W E + + YY +N K G G+I G ++ E TNQQ +L AI Sbjct 1040 LKLWYTLT-KEPIPKEDVYYVGACNRNSKEGKAGYISQYGKQRVETLENTTNQQAKLTAI 1098 Query 469 EEALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHK 528 + AL+ +N+VTDS+YA L + +P+ +I+ + +K +I + WVP HK Sbjct 1099 KMALEDSGPNVNIVTDSQYAMGILTAQPTQS--DSPLVEQIIALMIQKQQIYLQWVPAHK 1156 Query 529 GIPQNEEIDKYISE-----IFLAK 547 GI NEEIDK +S+ +FL K Sbjct 1157 GIGGNEEIDKLVSKGIRRVLFLEK 1180 >RecName: Full=Intracisternal A-particle Pol-related polyprotein; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Mouse intracisternal A-particle MIA14] Sequence ID: P11368.1 Length: 867 Range 1: 31 to 566 Score:170 bits(431), Expect:6e-43, Method:Compositional matrix adjust., Identities:150/556(27%), Positives:252/556(45%), Gaps:58/556(10%) Query 16 VPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRELN 75 VPQW L+ EKL+ + +++++ ++ G + + W NTPIF IKKKSGKWR+L D R +N Sbjct 31 VPQWHLSSEKLEAVIQLVEEQLKLGHIDPSTSPW--NTPIFVIKKKSGKWRLLHDLRPIN 88 Query 76 KQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPC 135 +Q Q GLP L + ++ I+DI D +F+IPL R FT+ S N+ P Sbjct 89 EQMNLFGPVQRGLPVLSALPRGWNLIIIDIKDCFFSIPLCPRDRPRFAFTIPSINSDEPD 148 Query 136 KRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHREI 195 RY WKVLPQG SP++ Q +QE L +Q P + +YMDDI + E+ ++ Sbjct 149 NRYQWKVLPQGMSNSPTMCQLYVQEALLPVREQFPSLILLLYMDDILLCHK-ELTMLQKA 207 Query 196 VKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPELTKGTI-TLNKLQ 254 L ++Q+G + EK Q ++LG + P QK E+ + + TLN Q Sbjct 208 YPFLLKTLSQWGLQIATEKVQISDTGQFLGSVVSPDKIVPQKV---EIRRDHLHTLNNFQ 264 Query 255 KLVGELVWRQSIIGKSIPN-----ILKLMEGDRELQSERKIEEVHVKEWEACRKKLEEME 309 KL+G++ W + + IP+ + +EGD + S R + + + K L+ + Sbjct 265 KLLGDINWLRPFL--KIPSAELRPLFWYLEGDPHISSPRTLTLAANQALQKVEKALQNAQ 322 Query 310 GNYYNKDKDVYGQLAWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSI----PQQVIKAAQK 365 +D + + + V + G LW++ N+ I P + + A K Sbjct 323 LQAI-EDSQPFSLCVFKTAQLPTAVLWQNGPLLWIH--PNVSPAKIIDWYPDAIAQLALK 379 Query 366 LTQEVIIRTGKIPWIL-----------LPGKEEDWRLELQLGNITWMPKFWSCYRGH--- 411 + I G+ P++L L DW + + ++ K + Y H Sbjct 380 GLKAAITHFGRSPYLLIVPYTAAQVQTLAATSNDWAVLV----TSFSGKIDNHYPKHPIL 435 Query 412 -------TRWRKRNIIEEVVEGPTYYTDGGKKNKVGSLGFIVSTGEKFRK-HEEGTNQQL 463 + + + + G YTDG K +G V+ G+ K + E + + + Sbjct 436 QFAQNQSVVFPQITVRNPLKNGIVVYTDGSKTG----IGAYVANGKVVSKQYNENSPRMV 491 Query 464 ELRAIEEALKQGPQTMNLVTDSRY---AFEFLLRNWDEEV---IKNPIQARIMEIAHKKD 517 E + E LK + +N+V+DS Y A L W ++ + N Q +I + + Sbjct 492 ECLVVLEVLKTFLEPLNIVSDSCYVVNAVNLLEGGWSDKPSSRVANIFQ-QIQLVLLSRS 550 Query 518 RIGVHWVPGHKGIPQN 533 + + V H G+P + Sbjct 551 PVYITHVRAHSGLPTS 566 >RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein; Contains: RecName: Full=p12; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease 17 kDa; Contains: RecName: Full=Protease 13 kDa; Contains: RecName: Full=G-patch peptide; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Jaagsiekte sheep retrovirus] Sequence ID: P31623.2 Length: 1726 Range 1: 890 to 1374 Score:171 bits(432), Expect:8e-43, Method:Compositional matrix adjust., Identities:137/501(27%), Positives:234/501(46%), Gaps:45/501(8%) Query 16 VPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRELN 75 V QWPLT+EKL +++ + + G + + W N+PIF IKKKSGKWR+L D R++N Sbjct 890 VDQWPLTQEKLSAAQQLVQEQLRLGHIEPSTSAW--NSPIFVIKKKSGKWRLLQDLRKVN 947 Query 76 KQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPC 135 + + Q GLP P + K ++ ++D+ D ++TIPL + F+L S N P Sbjct 948 ETMMHMGALQPGLPTPSAIPDKSYIIVIDLKDCFYTIPLAPQDCKRFAFSLPSVNFKEPM 1007 Query 136 KRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHREI 195 +RY W+VLPQG SP++ Q + + Q+ P++ YMDDI + E ++ Sbjct 1008 QRYQWRVLPQGMTNSPTLCQKFVATAIAPVRQRFPQLYLVHYMDDILLAHTDEHLLYQAF 1067 Query 196 VKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPELTKGTITLNKLQK 255 L +++ G + +EK Q +P +LGF L+P+ + Q L T TLN QK Sbjct 1068 -SILKQHLSLNGLVIADEKIQTHFPYNYLGFSLYPRVYNTQLVKLQ--TDHLKTLNDFQK 1124 Query 256 LVGELVWRQSII---GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACRKKLEEMEGNY 312 L+G++ W + + ++ + +++GD + S R + ++ + + + + Y Sbjct 1125 LLGDINWIRPYLKLPTYTLQPLFDILKGDSDPASPRTLSLEGRTALQSIEEAIRQQQITY 1184 Query 313 YNKDKDVYGQLAWG------DKAIEYIVYQEKGKPL-WVNVVHNIKNLSIP--QQVIKAA 363 + Q +WG +A ++YQ+ KPL W+ + +P + V K Sbjct 1185 CDY------QRSWGLYILPTPRAPTGVLYQD--KPLRWIYLSATPTKHLLPYYELVAKII 1236 Query 364 QKLTQEVIIRTG-KIPWILLPG--KEEDWRLELQ----------LGNITW---MPKFWSC 407 K E I G + P+I +P +++DW + G IT K Sbjct 1237 AKGRHEAIQYFGMEPPFICVPYALEQQDWLFQFSDNWSIAFANYPGQITHHYPSDKLLQF 1296 Query 408 YRGHTRWRKRNIIEE-VVEGPTYYTDGGKKNKVGSLGFIVSTGEKFRKHEEGTNQQLELR 466 H + + + + E +TDG G+ I++ + + + Q +EL Sbjct 1297 ASSHAFIFPKIVRRQPIPEATLIFTDGSSN---GTAALIINHQTYYAQTSFSSAQVVELF 1353 Query 467 AIEEALKQGPQTMNLVTDSRY 487 A+ +AL P + NL TDS Y Sbjct 1354 AVHQALLTVPTSFNLFTDSSY 1374 Range 2: 600 to 718 Score:65.9 bits(159), Expect:1e-09, Method:Compositional matrix adjust., Identities:39/125(31%), Positives:66/125(52%), Gaps:7/125(5%) Query 559 DAGYDLICPEEVTIEPGQ-VKCIPIELRLNLKKSQWAMIATKSSMAAKGVFTQGGIIDSG 617 AG DL + P V+ + + L ++ +SS + KG+ G+IDS Sbjct 600 SAGLDLCATSYTVLTPEMGVQTLATGVFGPLPPGTVGLLLGRSSASLKGILIHPGVIDSD 659 Query 618 YQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGSTGMY 677 Y G+I+++ NKI +VI G++ AQL+L+ L G++ +R +KGFGS+ Y Sbjct 660 YTGEIKILASAPNKI-IVINAGQRIAQLLLV-----PLVIQGKTINRDRQDKGFGSSDAY 713 Query 678 WIENI 682 W++N+ Sbjct 714 WVQNV 718 >RecName: Full=Intracisternal A-particle Pol-related polyprotein; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Golden hamster intracisternal A-particle H18] Sequence ID: P04026.1 Length: 863 Range 1: 20 to 469 Score:165 bits(417), Expect:3e-41, Method:Compositional matrix adjust., Identities:139/482(29%), Positives:219/482(45%), Gaps:42/482(8%) Query 16 VPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRELN 75 V QWPL+ EKL+ +T ++ + G L + W NTPIF IKKKSGKWR+L D R +N Sbjct 20 VSQWPLSSEKLEAVTRLVQEQERLGHLEPSTSPW--NTPIFVIKKKSGKWRLLHDLRAIN 77 Query 76 KQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPC 135 Q Q GLP L + + I+DI D +F+IPLY R FT+ S N++ P Sbjct 78 NQMHLFGPVQRGLPLLSALPQDWKLIIIDIKDCFFSIPLYPRDRPRFAFTIPSLNHMEPD 137 Query 136 KRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHREI 195 KR+ WKVLPQG SP++ Q +QE LE +Q + YMDDI I E+ ++ Sbjct 138 KRFQWKVLPQGMANSPTICQLYVQEALEPIRKQFTSLIVIHYMDDILICHK-ELDVLQKA 196 Query 196 VKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPELTKGTI-TLNKLQ 254 L + Q+G + EK Q +LG ++ P+ QK E+ K + TLN Q Sbjct 197 FPMLVAELKQWGLEIASEKVQIADTGLFLGSKITPKNIVPQKI---EIRKDHLQTLNDFQ 253 Query 255 KLVGELVWRQSII---GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACRKKLEEMEGN 311 KL+G++ W + + + + L+EG+ + S RK + + + L+E + Sbjct 254 KLLGDINWLRPFLKIPSADLKPLFDLLEGEPHISSPRKFTPAAHRALQMVEEALQEAQIT 313 Query 312 YYNKDKDVYGQLAWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIPQQVIKAAQKLTQEVI 371 + K + W A+ + + K + + +L +P AAQ T Sbjct 314 TNSPAKII----DWYPDAVAQ--PRSRIKAAVTHFGRDPDSLIVP---YTAAQVQT---- 360 Query 372 IRTGKIPWILLPGKEEDWRLEL-----QLGN-ITWMPKFWSCYRGHTRWRKRNIIEEVVE 425 L DW + + Q+ N P + + + + + Sbjct 361 ----------LAATSSDWAVLVTSFSGQIDNHFPKHPILQFALNQAIVFPQVTAKDPLPD 410 Query 426 GPTYYTDGGKKNKVGSLGFIVSTGEKFRKHEEGTNQQLELRAIEEALKQGPQTMNLVTDS 485 G YTDG +K G ++V +++ E + Q +E + E L+ P +N+V+DS Sbjct 411 GTVVYTDG---SKTGLGAYVVKDRVISKQYNETSPQVVECLIVLEVLEAFPGPLNIVSDS 467 Query 486 RY 487 Y Sbjct 468 SY 469 >RecName: Full=Endogenous retrovirus group K member 18 Pol protein; AltName: Full=HERV-K(C1a) Pol protein; AltName: Full=HERV-K110 Pol protein; AltName: Full=HERV-K18 Pol protein; AltName: Full=HERV-K_1q23.3 provirus ancestral Pol protein; Includes: RecName: Full=Reverse transcriptase; Includes: RecName: Full=Ribonuclease H; Short=RNase H [Homo sapiens] Sequence ID: Q9QC07.2 Length: 812 Range 1: 36 to 590 Score:162 bits(411), Expect:2e-40, Method:Compositional matrix adjust., Identities:150/567(26%), Positives:255/567(44%), Gaps:49/567(8%) Query 16 VPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRELN 75 V QWPL ++KL+ L + ++ +E+G + + W N+P+F I+KKS KWRML D R +N Sbjct 36 VNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPW--NSPVFVIQKKSSKWRMLTDLRAVN 93 Query 76 KQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPC 135 + + Q GLP P + K + I+D+ D +FTIPL E E FT+ + NN P Sbjct 94 AVIQPMGPLQPGLPSPAMIPKDWPLIIIDLKDCFFTIPLAEQDCEKFAFTIPAINNKEPA 153 Query 136 KRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHREI 195 R+ WKVLPQG SP++ Q + L+ + + Y DDI ++ + K + Sbjct 154 TRFQWKVLPQGMLNSPTICQTFVGRALQPVRDKFSDCYIIHYFDDILCAAETK-DKLIDC 212 Query 196 VKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPELTKGTI-TLNKLQ 254 L +A G + +K Q P +LG ++ + K QK E+ K T+ TLN Q Sbjct 213 YTFLQAEVANAGLAIASDKIQTSTPFHYLGMQIENRKIKPQKI---EIRKDTLKTLNDFQ 269 Query 255 KLVGELVWRQSIIG---KSIPNILKLMEGDRELQSERKIEEVHVKEWEACRKKLEEMEGN 311 KL+G++ W + +G ++ N+ ++ GD +L S+R + KE + +K++ + N Sbjct 270 KLLGDINWIRPTLGIPTYAMSNLFSILRGDSDLNSKRMLTPEATKEIKLVEEKIQSAQIN 329 Query 312 YYNKDKDVYGQLAWGDKAIEYIVYQEKGKPLWVNVVHN-IKNLSIPQQVIKAAQKLTQEV 370 + + + + I+ Q W + H+ +K ++ I T+ Sbjct 330 RIDPLAPLQLLIFATAHSPTGIIIQNTDLVEWSFLPHSTVKTFTLYLDQIATLIGPTRLR 389 Query 371 IIR-TGKIP-WILLPGKEEDWRLELQLGNITW---MPKFWSCYRGH------------TR 413 II+ G P I++P +E R + + W + F H T Sbjct 390 IIKLCGNDPDKIVVPLTKEQVRQAF-INSGAWQIGLANFVGIIDNHYPKTKIFQFLKLTT 448 Query 414 WRKRNII--EEVVEGPTYYTDGGKKNKVGSLGFIVSTGEKFRKHEEGTNQQLELRAIEEA 471 W I E + T +TDG KV G E+ K + Q+ EL A+ Sbjct 449 WILPKITRREPLENALTVFTDGSSNGKVAYTG----PKERVIKTPYQSAQRAELVAVITV 504 Query 472 LKQGPQTMNLVTDSRYAFEFLLRNWDEEVIK-------NPIQARIMEIAHKKD-RIGVHW 523 L+ Q +N+++DS Y + R+ + +IK N + + + K++ + Sbjct 505 LQDFDQPINIISDSAYVVQ-ATRDVETALIKYSMDDQLNQLFNLLQQTVRKRNFPFYITH 563 Query 524 VPGHKGIP-----QNEEIDKYISEIFL 545 + H +P NE+ D +S F+ Sbjct 564 IRAHTNLPGPLTKANEQADLLVSSAFI 590 >RecName: Full=Endogenous retrovirus group K member 8 Pol protein; AltName: Full=HERV-K115 Pol protein; AltName: Full=HERV-K_8p23.1 provirus ancestral Pol protein; Includes: RecName: Full=Reverse transcriptase; Short=RT; Includes: RecName: Full=Ribonuclease H; Short=RNase H; Includes: RecName: Full=Integrase; Short=IN [Homo sapiens] Sequence ID: P63133.1 Length: 956 Range 1: 36 to 523 Score:163 bits(412), Expect:2e-40, Method:Compositional matrix adjust., Identities:139/499(28%), Positives:231/499(46%), Gaps:35/499(7%) Query 16 VPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRELN 75 V QWPL ++KL+ L + ++ +E+G + + W N+P+F I+KKSGKWRML D R +N Sbjct 36 VNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPW--NSPVFVIQKKSGKWRMLTDLRAVN 93 Query 76 KQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPC 135 + + Q GLP P + K + I+D+ D +FTIPL E E FT+ + NN P Sbjct 94 AVIQPMGPLQPGLPSPAMIPKDWPLIIIDLKDCFFTIPLAEQDCEKFAFTIPAINNKEPA 153 Query 136 KRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHREI 195 R+ WKVLPQG SP++ Q + L+ ++ + Y+DDI ++ + K + Sbjct 154 TRFQWKVLPQGMLNSPTICQTFVGRALQPVRKKFSDCYIIHYIDDILCAAETK-DKLIDC 212 Query 196 VKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPELTKGTI-TLNKLQ 254 L +A G + +K Q P +LG ++ + K QK E+ K T+ TLN Q Sbjct 213 YTFLQAEVASAGLAIASDKIQTSTPFHYLGMQIENRKIKPQKI---EIRKDTLKTLNDFQ 269 Query 255 KLVGELVWRQSIIG---KSIPNILKLMEGDRELQSERKIEEVHVKEWEACRKKLEEMEGN 311 KL+G++ W Q +G ++ N+ ++ GD +L S+R + KE + +K++ + N Sbjct 270 KLLGDINWIQPTLGIPTYAMSNLFSILRGDSDLNSKRILTPEATKEIKLVEEKIQSAQIN 329 Query 312 YYNKDKDVYGQLAWGDKAIEYIVYQEKGKPLWVNVVHN-IKNLSIPQQVIKAAQKLTQEV 370 + + + + I+ Q W + H+ +K ++ I T+ Sbjct 330 RIDPLAPLQLLIFATAHSPTGIIIQNTDLVEWSFLPHSTVKTFTLYLDQIATLIGQTRLR 389 Query 371 IIR-TGKIP-WILLPGKEEDWRLELQLGNITW---MPKFWSCYRGH------------TR 413 II+ G P I++P +E R + + W + F H T Sbjct 390 IIKLCGNDPDKIVVPLTKEQVRQAF-INSGAWQIGLANFVGIIDNHYPKTKIFQFLKLTT 448 Query 414 WRKRNII--EEVVEGPTYYTDGGKKNKVGSLGFIVSTGEKFRKHEEGTNQQLELRAIEEA 471 W I E + T +TDG K G E+ K + Q+ EL A+ Sbjct 449 WILPKITRREPLENALTVFTDGSSNGKAAYTG----PKERVIKTPYQSAQRAELVAVITV 504 Query 472 LKQGPQTMNLVTDSRYAFE 490 L+ Q +N+++DS Y + Sbjct 505 LQDFDQPINIISDSAYVVQ 523 >RecName: Full=Endogenous retrovirus group K member 11 Pol protein; AltName: Full=HERV-K_3q27.2 provirus ancestral Pol protein; Includes: RecName: Full=Reverse transcriptase; Short=RT; Includes: RecName: Full=Ribonuclease H; Short=RNase H; Includes: RecName: Full=Integrase; Short=IN [Homo sapiens] Sequence ID: Q9UQG0.2 Length: 969 Range 1: 36 to 593 Score:162 bits(410), Expect:3e-40, Method:Compositional matrix adjust., Identities:150/570(26%), Positives:257/570(45%), Gaps:49/570(8%) Query 16 VPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRELN 75 V QWPL ++KL+ L + ++ +E+G + + W N+P+F I+KKSGKWRML D R +N Sbjct 36 VNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPW--NSPVFVIQKKSGKWRMLTDLRAVN 93 Query 76 KQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPC 135 + + Q GLP P + K + I+D+ D +FTIPL E E FT+ + NN P Sbjct 94 AVIQPMGPLQPGLPSPAMIPKDWPLIIIDLKDCFFTIPLAEQDCEKFAFTIPAINNKEPA 153 Query 136 KRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHREI 195 R+ WKVLPQG SP++ Q + L+ ++ + Y+DDI ++ + K + Sbjct 154 TRFQWKVLPQGMLNSPTICQTFVGRALQPVREKFSDCYIIHYIDDILCAAETK-DKLIDC 212 Query 196 VKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPELTKGTI-TLNKLQ 254 L +A G + +K Q P +LG ++ + K QK E+ K T+ TLN Q Sbjct 213 YTFLQAEVANAGLAIASDKIQTSTPFHYLGMQIENRKIKPQKI---EIRKDTLKTLNDFQ 269 Query 255 KLVGELVWRQSIIG---KSIPNILKLMEGDRELQSERKIEEVHVKEWEACRKKLEEMEGN 311 KL+G++ W + +G ++ N+ ++ GD +L S+R + KE + +K++ + N Sbjct 270 KLLGDINWIRPTLGIPTYAMSNLFSILRGDSDLNSKRILTPEATKEIKLVEEKIQSAQIN 329 Query 312 YYNKDKDVYGQLAWGDKAIEYIVYQEKGKPLWVNVVHN-IKNLSIPQQVIKAAQKLTQEV 370 + + + + I+ Q W + H+ +K ++ I T+ Sbjct 330 RIDPLAPLQLLIFATAHSPTGIIIQNTDLVEWSFLPHSTVKTFTLYLDQIATLIGQTRLR 389 Query 371 IIR-TGKIP-WILLPGKEEDWRLELQLGNITW---MPKFWSCYRGH------------TR 413 II+ G P I++P +E R + + W + F H T Sbjct 390 IIKLCGNDPDKIVVPLTKEQVRQAF-INSGAWQIGLANFVGIIDNHYPKTKIFQFLKMTT 448 Query 414 WRKRNII--EEVVEGPTYYTDGGKKNKVGSLGFIVSTGEKFRKHEEGTNQQLELRAIEEA 471 W I E + T +TDG K G E+ K + Q+ EL A+ Sbjct 449 WILPKITRREPLENALTVFTDGSSNGKAAYTG----PKERVIKTPYQSAQRAELVAVITV 504 Query 472 LKQGPQTMNLVTDSRYAFEFLLRNWDEEVIK-------NPIQARIMEIAHKKD-RIGVHW 523 L+ Q +N+++DS Y + R+ + +IK N + + + K++ + Sbjct 505 LQDFDQPINIISDSAYVVQ-ATRDVETALIKYSMDDQLNQLFNLLQQTVRKRNFPFYITH 563 Query 524 VPGHKGIP-----QNEEIDKYISEIFLAKE 548 + H +P NEE D +S + + Sbjct 564 IRAHTNLPGPLTKANEEADLLVSSALIKAQ 593 >RecName: Full=Endogenous retrovirus group K member 7 Pol protein; AltName: Full=HERV-K(III) Pol protein; AltName: Full=HERV-K102 Pol protein; AltName: Full=HERV-K_1q22 provirus ancestral Pol protein; Includes: RecName: Full=Reverse transcriptase; Short=RT; Includes: RecName: Full=Ribonuclease H; Short=RNase H; Includes: RecName: Full=Integrase; Short=IN [Homo sapiens] Sequence ID: P63135.1 Length: 1459 Range 1: 36 to 523 Score:161 bits(408), Expect:7e-40, Method:Compositional matrix adjust., Identities:138/499(28%), Positives:230/499(46%), Gaps:35/499(7%) Query 16 VPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRELN 75 V QWPL ++KL+ L + ++ +E+G + + W N+P+F I+KKSGKWRML D R +N Sbjct 36 VNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPW--NSPVFVIQKKSGKWRMLTDLRAVN 93 Query 76 KQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPC 135 + + Q GLP P + K + I+D+ D +FTIPL E E FT+ + NN P Sbjct 94 AVIQPMGPLQPGLPSPAMIPKDWPLIIIDLKDCFFTIPLAEQDCEKFAFTIPAINNKEPA 153 Query 136 KRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHREI 195 R+ WKVLPQG SP++ Q + L+ ++ + Y+DDI ++ K + Sbjct 154 TRFQWKVLPQGMLNSPTICQTFVGRALQPVREKFSDCYIIHYIDDILCAAETR-DKLIDC 212 Query 196 VKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPELTKGTI-TLNKLQ 254 L +A G + +K Q P +LG ++ + K QK E+ K T+ TLN Q Sbjct 213 YTFLQAEVANAGLAIASDKIQTSTPFHYLGMQIENRKIKQQKI---EIRKDTLKTLNDFQ 269 Query 255 KLVGELVWRQSIIG---KSIPNILKLMEGDRELQSERKIEEVHVKEWEACRKKLEEMEGN 311 KL+G++ W + +G ++ N+ ++ GD +L S+R + KE + +K++ + N Sbjct 270 KLLGDINWIRPTLGIPTYAMSNLFSILRGDSDLNSKRILTPEATKEIKLVEEKIQSAQIN 329 Query 312 YYNKDKDVYGQLAWGDKAIEYIVYQEKGKPLWVNVVHN-IKNLSIPQQVIKAAQKLTQEV 370 + + + + I+ Q W + H+ +K ++ I T+ Sbjct 330 RIDPLAPLQLLIFATAHSPTGIIIQNTDLVEWSFLPHSTVKTFTLYLDQIATLIGQTRLR 389 Query 371 IIR-TGKIP-WILLPGKEEDWRLELQLGNITW---MPKFWSCYRGH------------TR 413 II+ G P I++P +E R + + W + F H T Sbjct 390 IIKLCGNDPDKIVVPLTKEQVRQAF-INSGAWQIGLANFVGIIDNHYPKTKIFQFLKLTT 448 Query 414 WRKRNII--EEVVEGPTYYTDGGKKNKVGSLGFIVSTGEKFRKHEEGTNQQLELRAIEEA 471 W I E + T +TDG K G E+ K + Q+ EL A+ Sbjct 449 WILPKITRREPLENALTVFTDGSSNGKAAYTG----PKERVIKTPYQSAQRAELVAVITV 504 Query 472 LKQGPQTMNLVTDSRYAFE 490 L+ Q +N+++DS Y + Sbjct 505 LQDFDQPINIISDSAYVVQ 523 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p19; Contains: RecName: Full=p2A; Contains: RecName: Full=p2B; Contains: RecName: Full=p10; Contains: RecName: Full=Capsid protein p27, alternate cleaved 1; Contains: RecName: Full=Capsid protein p27, alternate cleaved 2; Contains: RecName: Full=Spacer peptide; Short=SP; AltName: Full=p3; Contains: RecName: Full=Nucleocapsid protein p12; AltName: Full=NCp12; Contains: RecName: Full=Protease p15; Contains: RecName: Full=Reverse transcriptase beta-subunit; Short=RT-beta; Contains: RecName: Full=Reverse transcriptase alpha-subunit; Short=RT-alpha; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=pp32; Contains: RecName: Full=p4 [Rous sarcoma virus - Schmidt-Ruppin B] Sequence ID: O92956.2 Length: 1603 Range 1: 729 to 1261 Score:159 bits(403), Expect:3e-39, Method:Compositional matrix adjust., Identities:161/553(29%), Positives:250/553(45%), Gaps:57/553(10%) Query 16 VPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTC-NTPIFCIKKKSGKWRMLIDFREL 74 + QWPL E KL LT++++K E +LG P +C NTP+F I+K SG +R+L D R + Sbjct 729 IDQWPLPEGKLVALTQLVEK---ELQLGHIEPSLSCWNTPVFVIRKASGSYRLLHDLRAV 785 Query 75 NKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGP 134 N + Q G P L + + +LD+ D +F+IPL E RE FTL S NN P Sbjct 786 NAKLVPFGAVQQGAPVLSALPRGWPLMVLDLKDCFFSIPLAEQDREAFAFTLPSVNNQAP 845 Query 135 CKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHRE 194 +R+ WKVLPQG SP++ Q + ++LE +HP ++ YMDD+ + + Sbjct 846 ARRFQWKVLPQGMTCSPTICQLVVGQVLEPLRLKHPSLRMLHYMDDLLLAASSH-DGLEA 904 Query 195 IVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPELTKGTITLNKLQ 254 +++ N + + GFT+ +K Q+ ++LG++L T+ + E TL +Q Sbjct 905 AGEEVINTLERAGFTISPDKIQREPGVQYLGYKLG-STYVAPVGLVAE--PRIATLWDVQ 961 Query 255 KLVGELVWRQSIIGKSIPNIL------KLMEGD----RELQSERKI---EEVHVKEWEAC 301 KLVG L W + +G IP L +L D RE + K+ E V + A Sbjct 962 KLVGSLQWLRPALG--IPPRLMGPFYEQLRGSDPNEAREWNLDMKMAWREIVQLSTTAAL 1019 Query 302 RK--KLEEMEGNYYNKDKDVYGQLAWGDKAIEYIVYQEKGKP-LWVNVVHNIKNLSIPQQ 358 + +EG ++ G L G +P LW+ K + + Sbjct 1020 ERWDPALPLEGAVVRCEQGAIGVLGQG--------LSTHPRPCLWLFSTQPTKAFTAWLE 1071 Query 359 VIKAAQKLTQEVIIRT-GK-IPWILLPGK-EEDWRLE----LQL----GNI--TWMPKFW 405 V+ + +RT GK + +LLP ED L L L G I + P + Sbjct 1072 VLTLLITKLRASAVRTFGKEVDILLLPACFREDLPLPEGILLALRGFAGKIRSSDTPSIF 1131 Query 406 SCYRGHTRWRKRNIIEEVVEGPTYYTDGGKKNKVGSLGFIVSTGEKFRKHE----EGTNQ 461 R K + + V GPT +TD G + + G ++ E + Q Sbjct 1132 DIARPLHVSLKVRVTDHPVPGPTVFTDASSSTHKGVV--VWREGPRWEIKEIADLGASVQ 1189 Query 462 QLELRAIEEALKQGPQT-MNLVTDSRYAFEFLLRNWDEEVIKNPIQARIME--IAHKKDR 518 QLE RA+ AL P T N+VTDS + + LL+ +E + + A I+E ++ + Sbjct 1190 QLEARAVAMALLLWPTTPTNVVTDSAFVAKMLLK-MGQEGVPSTAAAFILEDALSQRSAM 1248 Query 519 IGVHWVPGHKGIP 531 V V H +P Sbjct 1249 AAVLHVRSHSEVP 1261 >RecName: Full=Endogenous retrovirus group K member 6 Pol protein; AltName: Full=HERV-K(C7) Pol protein; AltName: Full=HERV-K(HML-2.HOM) Pol protein; AltName: Full=HERV-K108 Pol protein; AltName: Full=HERV-K_7p22.1 provirus ancestral Pol protein; Includes: RecName: Full=Reverse transcriptase; Short=RT; Includes: RecName: Full=Ribonuclease H; Short=RNase H; Includes: RecName: Full=Integrase; Short=IN [Homo sapiens] Sequence ID: Q9BXR3.2 Length: 956 Range 1: 36 to 534 Score:159 bits(401), Expect:4e-39, Method:Compositional matrix adjust., Identities:140/511(27%), Positives:236/511(46%), Gaps:36/511(7%) Query 16 VPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRELN 75 V QWPL ++KL+ L + ++ +E+G + + W N+P+F I+KKSGKWRML D R +N Sbjct 36 VNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPW--NSPVFVIQKKSGKWRMLTDLRAVN 93 Query 76 KQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPC 135 + + Q GLP P + K + I+D+ D +FTIPL E E FT+ + NN P Sbjct 94 AVIQPMGPLQPGLPSPAMIPKDWPLIIIDLKDCFFTIPLAEQDCEKFAFTIPAINNKEPA 153 Query 136 KRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHREI 195 R+ WKVLPQG SP++ Q + L+ ++ + +DDI ++ + K + Sbjct 154 TRFQWKVLPQGMLNSPTICQTFVGRALQPVREKFSDCYIIHCIDDILCAAETK-DKLIDC 212 Query 196 VKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPELTKGTI-TLNKLQ 254 L +A G + +K Q P +LG ++ + K QK E+ K T+ TLN Q Sbjct 213 YTFLQAEVANAGLAIASDKIQTSTPFHYLGMQIENRKIKPQKI---EIRKDTLKTLNDFQ 269 Query 255 KLVGELVWRQSIIG---KSIPNILKLMEGDRELQSERKIEEVHVKEWEACRKKLEEMEGN 311 KL+G++ W + +G ++ N+ ++ GD +L S+R + KE + +K++ + N Sbjct 270 KLLGDINWIRPTLGIPTYAMSNLFSILRGDSDLNSKRMLTPEATKEIKLVEEKIQSAQIN 329 Query 312 YYNKDKDVYGQLAWGDKAIEYIVYQEKGKPLWVNVVHN-IKNLSIPQQVIKAAQKLTQEV 370 + + + + I+ Q W + H+ +K ++ I T+ Sbjct 330 RIDPLAPLQLLIFATAHSPTGIIIQNTDLVEWSFLPHSTVKTFTLYLDQIATLIGQTRLR 389 Query 371 IIR-TGKIP-WILLPGKEEDWRLELQLGNITW---MPKFWSCYRGH------------TR 413 II+ G P I++P +E R + + W + F H T Sbjct 390 IIKLCGNDPDKIVVPLTKEQVRQAF-INSGAWKIGLANFVGIIDNHYPKTKIFQFLKLTT 448 Query 414 WRKRNII--EEVVEGPTYYTDGGKKNKVGSLGFIVSTGEKFRKHEEGTNQQLELRAIEEA 471 W I E + T +TDG K G E+ K + Q+ EL A+ Sbjct 449 WILPKITRREPLENALTVFTDGSSNGKAAYTG----PKERVIKTPYQSAQRAELVAVITV 504 Query 472 LKQGPQTMNLVTDSRYAFEFLLRNWDEEVIK 502 L+ Q +N+++DS Y + R+ + +IK Sbjct 505 LQDFDQPINIISDSAYVVQ-ATRDVETALIK 534 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p19; Contains: RecName: Full=p2A; Contains: RecName: Full=p2B; Contains: RecName: Full=p10; Contains: RecName: Full=Capsid protein p27, alternate cleaved 1; Contains: RecName: Full=Capsid protein p27, alternate cleaved 2; Contains: RecName: Full=Spacer peptide; Short=SP; AltName: Full=p3; Contains: RecName: Full=Nucleocapsid protein p12; AltName: Full=NCp12; Contains: RecName: Full=Protease p15; Contains: RecName: Full=Reverse transcriptase beta-subunit; Short=RT-beta; Contains: RecName: Full=Reverse transcriptase alpha-subunit; Short=RT-alpha; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=pp32; Contains: RecName: Full=p4 [Avian leukosis virus] Sequence ID: Q7SQ98.2 Length: 1603 Range 1: 731 to 1261 Score:157 bits(398), Expect:2e-38, Method:Compositional matrix adjust., Identities:160/551(29%), Positives:249/551(45%), Gaps:57/551(10%) Query 18 QWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTC-NTPIFCIKKKSGKWRMLIDFRELNK 76 QWPL E KL LT++++K E +LG P +C NTP+F I+K SG +R+L D R +N Sbjct 731 QWPLPEGKLVALTQLVEK---ELQLGHIEPSLSCWNTPVFVIRKASGSYRLLHDLRAVNA 787 Query 77 QTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPCK 136 + Q G P L + + +LD+ D +F+IPL E RE FTL S NN P + Sbjct 788 KLVPFGAVQQGAPVLSALPRGWPLMVLDLKDCFFSIPLAEQDREAFAFTLPSVNNQAPAR 847 Query 137 RYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHREIV 196 R+ WKVLPQG SP++ Q + ++LE +HP ++ YMDD+ + + Sbjct 848 RFQWKVLPQGMTCSPTICQLVVGQVLEPLRLKHPSLRMLHYMDDLLLAASSH-DGLEAAG 906 Query 197 KDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPELTKGTITLNKLQKL 256 +++ + + + GFT+ +K Q+ ++LG++L T+ + E TL +QKL Sbjct 907 EEVISTLERAGFTISPDKIQREPGVQYLGYKLG-STYVAPVGLVAE--PRIATLWDVQKL 963 Query 257 VGELVWRQSIIGKSIPNIL------KLMEGD----RELQSERKI---EEVHVKEWEACRK 303 VG L W + +G IP L +L D RE + K+ E V + A + Sbjct 964 VGSLQWLRPALG--IPPRLMGPFYEQLRGSDPNEAREWNLDMKMAWREIVQLSTTAALER 1021 Query 304 --KLEEMEGNYYNKDKDVYGQLAWGDKAIEYIVYQEKGKP-LWVNVVHNIKNLSIPQQVI 360 +EG ++ G L G +P LW+ K + +V+ Sbjct 1022 WDPALPLEGAVARCEQGAIGVLGQG--------LSTHPRPCLWLFSTQPTKAFTAWLEVL 1073 Query 361 KAAQKLTQEVIIRT-GK-IPWILLPGK-EEDWRLE----LQL----GNI--TWMPKFWSC 407 + +RT GK + +LLP ED L L L G I + P + Sbjct 1074 TLLITKLRASAVRTFGKEVDILLLPACFREDLPLPEGILLALKGFAGKIRSSDTPSIFDI 1133 Query 408 YRGHTRWRKRNIIEEVVEGPTYYTDGGKKNKVGSLGFIVSTGEKFRKHE----EGTNQQL 463 R K + + V GPT +TD G + + G ++ E + QQL Sbjct 1134 ARPLHVSLKVRVTDHPVPGPTVFTDASSSTHKGVV--VWREGPRWEIKEIADSGASVQQL 1191 Query 464 ELRAIEEALKQGPQT-MNLVTDSRYAFEFLLRNWDEEVIKNPIQARIME--IAHKKDRIG 520 E RA+ AL P T N+VTDS + + LL+ +E + + A I+E ++ + Sbjct 1192 EARAVAMALLLWPTTPTNVVTDSAFVAKMLLK-MGQEGVPSTAAAFILEDALSQRSAMAA 1250 Query 521 VHWVPGHKGIP 531 V V H +P Sbjct 1251 VLHVRSHSEVP 1261 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p19; Contains: RecName: Full=p2A; Contains: RecName: Full=p2B; Contains: RecName: Full=p10; Contains: RecName: Full=Capsid protein p27, alternate cleaved 1; Contains: RecName: Full=Capsid protein p27, alternate cleaved 2; Contains: RecName: Full=Spacer peptide; Short=SP; AltName: Full=p3; Contains: RecName: Full=Nucleocapsid protein p12; AltName: Full=NCp12; Contains: RecName: Full=Protease p15; Contains: RecName: Full=Reverse transcriptase beta-subunit; Short=RT-beta; Contains: RecName: Full=Reverse transcriptase alpha-subunit; Short=RT-alpha; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=pp32; Contains: RecName: Full=p4 [Avian leukosis virus - RSA] Sequence ID: Q04095.2 Length: 1603 Range 1: 729 to 1261 Score:157 bits(397), Expect:2e-38, Method:Compositional matrix adjust., Identities:160/553(29%), Positives:250/553(45%), Gaps:57/553(10%) Query 16 VPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTC-NTPIFCIKKKSGKWRMLIDFREL 74 + QWPL E KL LT++++K E +LG P +C NTP+F I+K SG +R+L D R + Sbjct 729 IDQWPLPEGKLVALTQLVEK---ELQLGHIEPSLSCWNTPVFVIRKASGSYRLLHDLRAV 785 Query 75 NKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGP 134 N + Q G P L + + +LD+ D +F+IPL E RE FTL S NN P Sbjct 786 NAKLVPFGAVQQGAPVLSALPRGWPLMVLDLKDCFFSIPLAEQDREAFAFTLPSVNNQAP 845 Query 135 CKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHRE 194 +R+ WKVLPQG SP++ Q + ++LE +HP ++ YMDD+ + + Sbjct 846 ARRFQWKVLPQGMTCSPTICQLVVGQVLEPLRLKHPSLRMLHYMDDLLLAASSH-DGLEA 904 Query 195 IVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPELTKGTITLNKLQ 254 +++ + + + GFT+ +K Q+ ++LG++L T+ + E TL +Q Sbjct 905 AGEEVISTLERAGFTISPDKIQREPGVQYLGYKLG-STYVAPVGLVAE--PRIATLWDVQ 961 Query 255 KLVGELVWRQSIIGKSIPNIL------KLMEGD----RELQSERKI---EEVHVKEWEAC 301 KLVG L W + +G IP L +L D RE + K+ E V + A Sbjct 962 KLVGSLQWLRPALG--IPPRLMGPFYEQLRGSDPNEAREWNLDMKMAWREIVQLSTTAAL 1019 Query 302 RK--KLEEMEGNYYNKDKDVYGQLAWGDKAIEYIVYQEKGKP-LWVNVVHNIKNLSIPQQ 358 + +EG ++ G L G +P LW+ K + + Sbjct 1020 ERWDPALPLEGAVARCEQGAIGVLGQG--------LSTHPRPCLWLFSTQPTKAFTAWLE 1071 Query 359 VIKAAQKLTQEVIIRT-GK-IPWILLPGK-EEDWRLE----LQL----GNI--TWMPKFW 405 V+ + +RT GK + +LLP ED L L L G I + P + Sbjct 1072 VLTLLITKLRASAVRTFGKEVDILLLPACFREDLPLPEGILLALRGFAGKIRSSDTPSIF 1131 Query 406 SCYRGHTRWRKRNIIEEVVEGPTYYTDGGKKNKVGSLGFIVSTGEKFRKHE----EGTNQ 461 R K + + V GPT +TD G + + G ++ E + Q Sbjct 1132 DIARPLHVSLKVRVTDHPVPGPTAFTDASSSTHKGVV--VWREGPRWEIKEIADLGASVQ 1189 Query 462 QLELRAIEEALKQGPQT-MNLVTDSRYAFEFLLRNWDEEVIKNPIQARIME--IAHKKDR 518 QLE RA+ AL P T N+VTDS + + LL+ +E + + A I+E ++ + Sbjct 1190 QLEARAVAMALLLWPTTPTNVVTDSAFVAKMLLK-MGQEGVPSTAAAFILEDALSQRSAM 1248 Query 519 IGVHWVPGHKGIP 531 V V H +P Sbjct 1249 AAVLHVRSHSEVP 1261 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p19; Contains: RecName: Full=p2A; Contains: RecName: Full=p2B; Contains: RecName: Full=p10; Contains: RecName: Full=Capsid protein p27, alternate cleaved 1; Contains: RecName: Full=Capsid protein p27, alternate cleaved 2; Contains: RecName: Full=Spacer peptide; Short=SP; AltName: Full=p3; Contains: RecName: Full=Nucleocapsid protein p12; AltName: Full=NCp12; Contains: RecName: Full=Protease p15; Contains: RecName: Full=Reverse transcriptase beta-subunit; Short=RT-beta; Contains: RecName: Full=Reverse transcriptase alpha-subunit; Short=RT-alpha; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=pp32; Contains: RecName: Full=p4 [Rous sarcoma virus - Prague C] Sequence ID: P03354.2 Length: 1603 Range 1: 731 to 1261 Score:156 bits(395), Expect:3e-38, Method:Compositional matrix adjust., Identities:160/551(29%), Positives:248/551(45%), Gaps:57/551(10%) Query 18 QWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTC-NTPIFCIKKKSGKWRMLIDFRELNK 76 QWPL E KL LT++++K E +LG P +C NTP+F I+K SG +R+L D R +N Sbjct 731 QWPLPEGKLVALTQLVEK---ELQLGHIEPSLSCWNTPVFVIRKASGSYRLLHDLRAVNA 787 Query 77 QTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPCK 136 + Q G P L + + +LD+ D +F+IPL E RE FTL S NN P + Sbjct 788 KLVPFGAVQQGAPVLSALPRGWPLMVLDLKDCFFSIPLAEQDREAFAFTLPSVNNQAPAR 847 Query 137 RYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHREIV 196 R+ WKVLPQG SP++ Q + ++LE +HP + YMDD+ + + Sbjct 848 RFQWKVLPQGMTCSPTICQLVVGQVLEPLRLKHPSLCMLHYMDDLLLAASSH-DGLEAAG 906 Query 197 KDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPELTKGTITLNKLQKL 256 +++ + + + GFT+ +K Q+ ++LG++L T+ + E TL +QKL Sbjct 907 EEVISTLERAGFTISPDKVQREPGVQYLGYKLG-STYVAPVGLVAE--PRIATLWDVQKL 963 Query 257 VGELVWRQSIIGKSIPNIL------KLMEGD----RELQSERKI---EEVHVKEWEACRK 303 VG L W + +G IP L +L D RE + K+ E V + A + Sbjct 964 VGSLQWLRPALG--IPPRLMGPFYEQLRGSDPNEAREWNLDMKMAWREIVRLSTTAALER 1021 Query 304 --KLEEMEGNYYNKDKDVYGQLAWGDKAIEYIVYQEKGKP-LWVNVVHNIKNLSIPQQVI 360 +EG ++ G L G +P LW+ K + +V+ Sbjct 1022 WDPALPLEGAVARCEQGAIGVLGQG--------LSTHPRPCLWLFSTQPTKAFTAWLEVL 1073 Query 361 KAAQKLTQEVIIRT-GK-IPWILLPGK-EEDWRLE----LQL----GNI--TWMPKFWSC 407 + +RT GK + +LLP ED L L L G I + P + Sbjct 1074 TLLITKLRASAVRTFGKEVDILLLPACFREDLPLPEGILLALKGFAGKIRSSDTPSIFDI 1133 Query 408 YRGHTRWRKRNIIEEVVEGPTYYTDGGKKNKVGSLGFIVSTGEKFRKHE----EGTNQQL 463 R K + + V GPT +TD G + + G ++ E + QQL Sbjct 1134 ARPLHVSLKVRVTDHPVPGPTVFTDASSSTHKGVV--VWREGPRWEIKEIADLGASVQQL 1191 Query 464 ELRAIEEALKQGPQT-MNLVTDSRYAFEFLLRNWDEEVIKNPIQARIME--IAHKKDRIG 520 E RA+ AL P T N+VTDS + + LL+ +E + + A I+E ++ + Sbjct 1192 EARAVAMALLLWPTTPTNVVTDSAFVAKMLLK-MGQEGVPSTAAAFILEDALSQRSAMAA 1250 Query 521 VHWVPGHKGIP 531 V V H +P Sbjct 1251 VLHVRSHSEVP 1261 >RecName: Full=Endogenous retrovirus group K member 10 Pol protein; AltName: Full=HERV-K10 Pol protein; AltName: Full=HERV-K107 Pol protein; AltName: Full=HERV-K_5q33.3 provirus ancestral Pol protein; Includes: RecName: Full=Reverse transcriptase; Short=RT; Includes: RecName: Full=Ribonuclease H; Short=RNase H; Includes: RecName: Full=Integrase; Short=IN [Homo sapiens] Sequence ID: P10266.2 Length: 1014 Range 1: 36 to 590 Score:155 bits(393), Expect:4e-38, Method:Compositional matrix adjust., Identities:146/567(26%), Positives:254/567(44%), Gaps:49/567(8%) Query 16 VPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRELN 75 V QWPL ++KL+ L + ++ +E+G + + W N+P+F I+KKSGKW L D R +N Sbjct 36 VNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPW--NSPVFVIQKKSGKWHTLTDLRAVN 93 Query 76 KQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPC 135 + + Q GLP P + K + I+D+ D +FTIPL E E FT+ + NN P Sbjct 94 AVIQPMGPLQPGLPSPAMIPKDWPLIIIDLKDCFFTIPLAEQDCEKFAFTIPAINNKEPA 153 Query 136 KRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHREI 195 R+ WKVLPQG SP++ Q + L+ ++ + Y+DDI ++ + K + Sbjct 154 TRFQWKVLPQGMLNSPTICQTFVGRALQPVREKFSDCYIIHYIDDILCAAETK-DKLIDC 212 Query 196 VKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPELTKGTI-TLNKLQ 254 L +A G + +K Q P +LG ++ + K QK E+ K T+ TLN Q Sbjct 213 YTFLQAEVANAGLAIASDKIQTSTPFHYLGMQIENRKIKPQKI---EIRKDTLKTLNDFQ 269 Query 255 KLVGELVWRQSIIG---KSIPNILKLMEGDRELQSERKIEEVHVKEWEACRKKLEEMEGN 311 KL+G++ W + +G ++ N+ ++ GD +L S+R + KE + +K++ + N Sbjct 270 KLLGDINWIRPTLGIPTYAMSNLFSILRGDSDLNSQRILTPEATKEIKLVEEKIQSAQIN 329 Query 312 YYNKDKDVYGQLAWGDKAIEYIVYQEKGKPLWVNVVHN-IKNLSIPQQVIKAAQKLTQEV 370 + + + + I+ Q W + H+ +K ++ I T+ Sbjct 330 RIDPLAPLQLLIFATAHSPTGIIIQNTDLVEWSFLPHSTVKTFTLYLDQIATLIGQTRLR 389 Query 371 IIR-TGKIP-WILLPGKEEDWRLELQLGNITW---MPKFWSCYRGH------------TR 413 I + G P I++P +E R + + W + F H T Sbjct 390 ITKLCGNDPDKIVVPLTKEQVRQAF-INSGAWQIGLANFVGLIDNHYPKTKIFQFLKLTT 448 Query 414 WRKRNII--EEVVEGPTYYTDGGKKNKVGSLGFIVSTGEKFRKHEEGTNQQLELRAIEEA 471 W I E + T +TDG K G E+ K + Q+ EL A+ Sbjct 449 WILPKITRREPLENALTVFTDGSSNGKAAYTG----PKERVIKTPYQSAQRDELVAVITV 504 Query 472 LKQGPQTMNLVTDSRYAFEFLLRNWDEEVIK-------NPIQARIMEIAHKKD-RIGVHW 523 L+ Q +N+++DS Y + R+ + +IK N + + + K++ + + Sbjct 505 LQDFDQPINIISDSAYVVQ-ATRDVETALIKYSMDDQLNQLFNLLQQTVRKRNFPFYITY 563 Query 524 VPGHKGIP-----QNEEIDKYISEIFL 545 + H +P NE+ D +S + Sbjct 564 IRAHTNLPGPLTKANEQADLLVSSALI 590 >RecName: Full=Endogenous retrovirus group K member 25 Pol protein; AltName: Full=HERV-K_11q22.1 provirus ancestral Pol protein; Includes: RecName: Full=Reverse transcriptase; Short=RT; Includes: RecName: Full=Ribonuclease H; Short=RNase H; Includes: RecName: Full=Integrase; Short=IN [Homo sapiens] Sequence ID: P63136.1 Length: 954 Range 1: 36 to 329 Score:154 bits(390), Expect:9e-38, Method:Compositional matrix adjust., Identities:97/300(32%), Positives:160/300(53%), Gaps:10/300(3%) Query 16 VPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRELN 75 V QWPL ++KL+ L + ++ +E+G + + W N+P+F I+KKSGKWRML D R +N Sbjct 36 VNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPW--NSPVFVIQKKSGKWRMLTDLRAVN 93 Query 76 KQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPC 135 + + Q GLP P + K + I+D+ D +FTIPL E E FT+ + NN P Sbjct 94 AVIQPMGPLQPGLPSPAMIPKDWPLIIIDLKDCFFTIPLAEQDCEKFAFTIPAINNKEPA 153 Query 136 KRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHREI 195 R+ WKVLPQG SP++ Q + L+ ++ + Y+DDI ++ + K + Sbjct 154 TRFQWKVLPQGMLNSPTICQTFVGRALQPVREKFSDCYIIHYIDDILCAAETK-DKLIDC 212 Query 196 VKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPELTKGTI-TLNKLQ 254 L +A G + +K Q P +LG ++ + K QK E+ K T+ LN Q Sbjct 213 YTFLQAEVANAGLAIASDKIQTSTPFHYLGMQIENRKIKPQKI---EIRKDTLKALNDFQ 269 Query 255 KLVGELVWRQSIIG---KSIPNILKLMEGDRELQSERKIEEVHVKEWEACRKKLEEMEGN 311 KL+G++ W + +G ++ N+ ++ GD +L S+R + KE + +K++ + N Sbjct 270 KLLGDINWIRPTLGIPTYAMSNLFSILRGDSDLNSKRMLTPEATKEIKLVEEKIQSAQIN 329 >RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp21; Contains: RecName: Full=Protein p3; Contains: RecName: Full=Protein p8; Contains: RecName: Full=Protein n; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Mouse mammary tumor virus (STRAIN BR6)] Sequence ID: P03365.3 Length: 1755 Range 1: 886 to 1418 Score:155 bits(392), Expect:9e-38, Method:Compositional matrix adjust., Identities:141/553(25%), Positives:244/553(44%), Gaps:59/553(10%) Query 18 QWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRELNKQ 77 QWPL +EKL+ L +++ + ++ G L ++ W NTP+F IKKKSGKWR+L D R +N Sbjct 886 QWPLKQEKLQALQQLVTEQLQLGHLEESNSPW--NTPVFVIKKKSGKWRLLQDLRAVNAT 943 Query 78 TEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPCKR 137 D+ Q GLP P + K + I+D+ D +F I L+ + F++ SPN P +R Sbjct 944 MHDMGALQPGLPSPVAVPKGWEIIIIDLQDCFFNIKLHPEDCKRFAFSVPSPNFKRPYQR 1003 Query 138 YYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHREIVK 197 + WKVLPQG K SP++ Q + + + ++ + YMDDI + EI+ Sbjct 1004 FQWKVLPQGMKNSPTLCQKFVDKAILTVRDKYQDSYIVHYMDDILLAHPSR-SIVDEILT 1062 Query 198 DLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPELTKGTITLNKLQKLV 257 + + ++G + EK QK K+LG + + +QK L T TLN QKL+ Sbjct 1063 SMIQALNKHGLVVSTEKIQKYDNLKYLGTHIQGDSVSYQK--LQIRTDKLRTLNDFQKLL 1120 Query 258 GELVWRQSIIGKS---IPNILKLMEGDRELQSERKIEEVHVKEWEACRKKLEEMEGNYYN 314 G + W + + + + + +++ GD S RK+ K + ++L + Sbjct 1121 GNINWIRPFLKLTTGELKPLFEILNGDSNPISTRKLTPEACKALQLMNERLSTARVKRLD 1180 Query 315 KD--------KDVYGQLA--WGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP------QQ 358 K Y A W D +E W+++ H + P Q Sbjct 1181 LSQPWSLCILKTEYTPTACLWQDGVVE-----------WIHLPHISPKVITPYDIFCTQL 1229 Query 359 VIKAAQKLTQ-------EVIIRTGKIPWILLPGKEEDWRLELQ--LGNITWM----PKFW 405 +IK + + +++ K+ + LL ++EDW + L LG + + P Sbjct 1230 IIKGRHRSKELFSKDPDYIVVPYTKVQFDLLLQEKEDWPISLLGFLGEVHFHLPKDPLLT 1289 Query 406 SCYRGHTRWRKRNIIEEVVEGPTYYTDGGKKNKVGSLGFIVSTGEKFRKHEEGTNQQLEL 465 + + + +G +TDG + S+ +I +++ + T QQ E+ Sbjct 1290 FTLQTAIIFPHMTSTTPLEKGIVIFTDGSANGR--SVTYIQGREPIIKENTQNTAQQAEI 1347 Query 466 RAIEEALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAH-------KKDR 518 A+ A ++ Q NL TDS+Y E +P E+ H ++++ Sbjct 1348 VAVITAFEEVSQPFNLYTDSKYVTGLFPEI--ETATLSPRTKIYTELKHLQRLIHKRQEK 1405 Query 519 IGVHWVPGHKGIP 531 + + GH G+P Sbjct 1406 FYIGHIRGHTGLP 1418 Range 2: 631 to 750 Score:53.5 bits(127), Expect:6e-06, Method:Compositional matrix adjust., Identities:43/126(34%), Positives:70/126(55%), Gaps:9/126(7%) Query 560 AGYDLICPEEV--TIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAKGVFTQGGIIDSG 617 AG DL +++ ++E G V +P ++ L + +I +SS KG+ G+IDS Sbjct 631 AGLDLSSQKDLILSLEDG-VSLVPTLVKGTLPEGTTGLIIGRSSNYKKGLEVLPGVIDSD 689 Query 618 YQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGSTG-M 676 +QG+I+V M + K AV+I +G + AQL+L+ K ERG +GFGST + Sbjct 690 FQGEIKV-MVKAAKNAVIIHKGERIAQLLLLPYLKLPN----PVIKEERGSEGFGSTSHV 744 Query 677 YWIENI 682 +W++ I Sbjct 745 HWVQEI 750 >RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp21; Contains: RecName: Full=Protein p3; Contains: RecName: Full=Protein p8; Contains: RecName: Full=Protein n; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Mouse mammary tumor virus (STRAIN C3H)] Sequence ID: P11283.2 Length: 1755 Range 1: 886 to 1418 Score:153 bits(387), Expect:4e-37, Method:Compositional matrix adjust., Identities:137/543(25%), Positives:244/543(44%), Gaps:39/543(7%) Query 18 QWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRELNKQ 77 QWPL +EKL+ L +++ + ++ G L ++ W NTP+F IKKKSGKWR+L D R +N Sbjct 886 QWPLKQEKLQALQQLVTEQLQLGHLEESNSPW--NTPVFVIKKKSGKWRLLQDLRAVNAT 943 Query 78 TEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPCKR 137 D+ Q GLP P + K + I+D+ D +F I L+ + F++ SPN P +R Sbjct 944 MHDMGALQPGLPSPVAVPKGWEIIIIDLQDCFFNIKLHPEDCKRFAFSVPSPNFKRPYQR 1003 Query 138 YYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHREIVK 197 + WKVLPQG K SP++ Q + + + ++ + YMDDI + EI+ Sbjct 1004 FQWKVLPQGMKNSPTLCQKFVDKAILTVRDKYQDSYIVHYMDDILLAHPSR-SIVDEILT 1062 Query 198 DLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPELTKGTITLNKLQKLV 257 + + ++G + EK QK K+LG + +QK L T TLN QKL+ Sbjct 1063 SMIQALNKHGLVVSTEKIQKYDNLKYLGTHIQGDAVSYQK--LQIRTDKLRTLNDFQKLL 1120 Query 258 GELVWRQSIIGKS---IPNILKLMEGDRELQSERKIEEVHVKEWEACRKKLEEMEGNYYN 314 G + W + + + + + +++ GD S RK+ K + ++L + Sbjct 1121 GNINWIRPFLKLTTGELKPLFEILNGDSNPISIRKLTPEACKALQLVNERLSIARVKRLD 1180 Query 315 KDKDVYGQLAWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP------QQVIKAAQKLTQ 368 + + + ++Q G W+++ H + P Q +IK + + Sbjct 1181 LSRPWSLCILKTEYTPTACLWQ-NGVLEWIHLPHISPKVITPYDIFCTQLIIKGRHRSKE 1239 Query 369 -------EVIIRTGKIPWILLPGKEEDWRLELQ--LGNITWM----PKFWSCYRGHTRWR 415 +++ K+ + LL ++EDW + L LG + + P + + Sbjct 1240 LFSKDPDYIVVPYTKVQFDLLLQEKEDWPISLLGFLGEVHFHLPKDPLLTFTLQTAIIFP 1299 Query 416 KRNIIEEVVEGPTYYTDGGKKNKVGSLGFIVSTGEKFRKHEEGTNQQLELRAIEEALKQG 475 + +G +TDG + S+ +I +++ + T QQ E+ A+ A ++ Sbjct 1300 HMTSTTPLEKGIVIFTDGSANGR--SVTYIQGREPIIKENTQNTAQQAEIVAVITAFEEV 1357 Query 476 PQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAH-------KKDRIGVHWVPGHK 528 Q+ NL TDS+Y E +P E+ H ++++ + + GH Sbjct 1358 SQSFNLYTDSKYVTGLFPEI--ETATLSPRTKIYTELRHLQRLIHKRQEKFYIGHIRGHT 1415 Query 529 GIP 531 G+P Sbjct 1416 GLP 1418 Range 2: 631 to 750 Score:53.5 bits(127), Expect:7e-06, Method:Compositional matrix adjust., Identities:43/126(34%), Positives:70/126(55%), Gaps:9/126(7%) Query 560 AGYDLICPEEV--TIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAKGVFTQGGIIDSG 617 AG DL +++ ++E G V +P ++ L + +I +SS KG+ G+IDS Sbjct 631 AGLDLSSQKDLILSLEDG-VSLVPTLVKGTLPEGTTGLIIGRSSNYKKGLEVLPGVIDSD 689 Query 618 YQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGSTG-M 676 +QG+I+V M + K AV+I +G + AQL+L+ K ERG +GFGST + Sbjct 690 FQGEIKV-MVKAAKNAVIIHKGERIAQLLLLPYLKLPN----PIIKEERGSEGFGSTSHV 744 Query 677 YWIENI 682 +W++ I Sbjct 745 HWVQEI 750 >RecName: Full=Endogenous retrovirus group K member 113 Pol protein; AltName: Full=HERV-K113 Pol protein; AltName: Full=HERV-K_19p13.11 provirus ancestral Pol protein; Includes: RecName: Full=Reverse transcriptase; Short=RT; Includes: RecName: Full=Ribonuclease H; Short=RNase H; Includes: RecName: Full=Integrase; Short=IN [Homo sapiens] Sequence ID: P63132.2 Length: 959 Range 1: 36 to 537 Score:150 bits(380), Expect:2e-36, Method:Compositional matrix adjust., Identities:138/514(27%), Positives:236/514(45%), Gaps:39/514(7%) Query 16 VPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRELN 75 V QWPL ++KL+ L + ++ +E+G + + W N+P+F I+KKSGKWRML D R +N Sbjct 36 VNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPW--NSPVFVIQKKSGKWRMLTDLRAVN 93 Query 76 KQT---EDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNL 132 + + Q GLP + K + I+D+ D +FTIPL E E FT+ + NN Sbjct 94 AVNAVIQPMGPLQPGLPSLAMIPKDWPLIIIDLKDCFFTIPLAEQDCEKFAFTIPAINNK 153 Query 133 GPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKH 192 P R+ WKVLPQG SP++ Q + L+ ++ + Y+DDI ++ + K Sbjct 154 EPATRFQWKVLPQGMLNSPTICQTFVGRALQPVREKFSDCYIIHYIDDILCAAETK-DKL 212 Query 193 REIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPELTKGTI-TLN 251 + L +A G + +K Q P +LG ++ + K K E+ K T+ TLN Sbjct 213 IDCYTFLQAEVANAGLAIASDKIQTSTPFHYLGMQIENRKIKPPKI---EIRKDTLKTLN 269 Query 252 KLQKLVGELVWRQSIIG---KSIPNILKLMEGDRELQSERKIEEVHVKEWEACRKKLEEM 308 QKL+G++ W + +G ++ N+ ++ GD +L S+R + KE + +K++ Sbjct 270 DFQKLLGDINWIRPTLGIPTYAMSNLFSILRGDSDLNSKRMLTPEATKEIKLVEEKIQSA 329 Query 309 EGNYYNKDKDVYGQLAWGDKAIEYIVYQEKGKPLWVNVVHN-IKNLSIPQQVIKAAQKLT 367 + N + + + + I+ Q W + H+ +K ++ + T Sbjct 330 QINRIDPLATLQLLIFATAHSPTGIIIQNTDLVEWSFLPHSTVKTFTLYLDQMATLIGQT 389 Query 368 QEVIIR-TGKIP-WILLPGKEEDWRLELQLGNITW---MPKFWSCYRGH----------- 411 + II+ G P I++P +E R + + W + F H Sbjct 390 RLRIIKLCGNDPDKIVVPLTKEQVRQAF-INSGAWQIGLANFVGIIDNHYPKTKIFQFLK 448 Query 412 -TRWRKRNII--EEVVEGPTYYTDGGKKNKVGSLGFIVSTGEKFRKHEEGTNQQLELRAI 468 T W I E + T +TDG K G E+ K + + Q+ EL A+ Sbjct 449 MTTWILPKITRREPLENALTVFTDGSSNGKAAYTG----PKERVIKTQYQSAQRAELVAV 504 Query 469 EEALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIK 502 L+ Q +N+++DS Y + R+ + +IK Sbjct 505 ITVLQDFDQPINIISDSAYVVQ-ATRDVETALIK 537 >RecName: Full=Endogenous retrovirus group K member 19 Pol protein; AltName: Full=HERV-K(C19) Pol protein; AltName: Full=HERV-K_19q11 provirus ancestral Pol protein; Includes: RecName: Full=Reverse transcriptase; Short=RT; Includes: RecName: Full=Ribonuclease H; Short=RNase H; Includes: RecName: Full=Integrase; Short=IN [Homo sapiens] Sequence ID: Q9WJR5.2 Length: 959 Range 1: 36 to 537 Score:148 bits(374), Expect:9e-36, Method:Compositional matrix adjust., Identities:137/514(27%), Positives:236/514(45%), Gaps:39/514(7%) Query 16 VPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRELN 75 V QWPL ++KL+ L + ++ +E+G + + W N+P+F I+KKSGKWRML D R +N Sbjct 36 VNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPW--NSPVFVIQKKSGKWRMLTDLRAVN 93 Query 76 KQT---EDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNL 132 + + Q GLP + K + I+D+ D +FTIPL E E FT+ + NN Sbjct 94 AVNAVIQPMGPLQPGLPSLAMIPKDWPLIIIDLKDCFFTIPLAEQDCEKFAFTIPAINNK 153 Query 133 GPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKH 192 P R+ WKVLPQG SP++ Q + L+ ++ + Y+DDI ++++ K Sbjct 154 EPATRFQWKVLPQGMLNSPTICQTFVGRALQPVREKFSDCYIIHYIDDILCAAEMK-DKL 212 Query 193 REIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPELTKGTI-TLN 251 + L +A G + +K Q P +L ++ + K K E+ K T+ TLN Sbjct 213 IDCYTFLQAEVANAGLAIASDKIQTSTPFHYLEMQIENRKIKPPKI---EIRKDTLKTLN 269 Query 252 KLQKLVGELVWRQSIIG---KSIPNILKLMEGDRELQSERKIEEVHVKEWEACRKKLEEM 308 QKL+G++ W + +G ++ N+ ++ GD +L S+R + KE + +K++ Sbjct 270 DFQKLLGDINWIRPTLGIPTYAMSNLFSILRGDSDLNSKRMLTPEATKEIKLVEEKIQSA 329 Query 309 EGNYYNKDKDVYGQLAWGDKAIEYIVYQEKGKPLWVNVVHN-IKNLSIPQQVIKAAQKLT 367 + N + + + + I+ Q W + H+ +K ++ + T Sbjct 330 QINRIDPLAPLQLLIFATAHSPTGIIIQNTDLVEWSFLPHSTVKTFTLYLDQMATLIGQT 389 Query 368 QEVIIR-TGKIP-WILLPGKEEDWRLELQLGNITW---MPKFWSCYRGH----------- 411 + II+ G P I++P +E R + + W + F H Sbjct 390 RLRIIKLCGNDPDKIVVPLTKEQVRQAF-INSGAWQIGLANFVGIIDNHYPKTKIFQFLK 448 Query 412 -TRWRKRNII--EEVVEGPTYYTDGGKKNKVGSLGFIVSTGEKFRKHEEGTNQQLELRAI 468 T W I E + T +TDG K G E+ K + + Q+ EL A+ Sbjct 449 MTTWILPKITRREPLENALTVFTDGSSNGKAAYTG----PKERVIKTQYQSAQRAELVAV 504 Query 469 EEALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIK 502 L+ Q +N+++DS Y + R+ + +IK Sbjct 505 ITVLQDFDQPINIISDSAYVVQ-ATRDVETALIK 537 >RecName: Full=Gag-Pro-Pol polyprotein; AltName: Full=Pr160Gag-Pro-Pol; Contains: RecName: Full=Matrix protein p19; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p15-pro; Short=NC'; Short=NC-pro; Contains: RecName: Full=Protease; Short=PR; Contains: RecName: Full=p1; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [HTLV-3 strain 2026ND] Sequence ID: Q0R5R2.3 Length: 1440 Range 1: 570 to 912 Score:147 bits(371), Expect:3e-35, Method:Compositional matrix adjust., Identities:104/348(30%), Positives:165/348(47%), Gaps:13/348(3%) Query 14 PHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRE 73 P V Q+PL E+L+ LT+++ + +E + P N PIF +KK +GKWR + D R Sbjct 570 PEVSQFPLNPERLQALTDLVSRALEAKHI--EPYQGPGNNPIFPVKKPNGKWRFIHDLRA 627 Query 74 LNKQTEDLTEAQLGLPHPGGL-QKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNL 132 N T DL G P L Q H+ +D+ DA+F IPL ++ Y FTL PNN Sbjct 628 TNSVTRDLASPSPGPPDLTSLPQGLPHLRTIDLTDAFFQIPLPTIFQPYFAFTLPQPNNY 687 Query 133 GPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKH 192 GP RY W+VLPQG+K SP++++ + IL + P YMDDI + S + Sbjct 688 GPGTRYSWRVLPQGFKNSPTLFEQQLSHILTPVRKTFPNSLIIQYMDDILLASPAP-GEL 746 Query 193 REIVKDLANYIAQYGFTLPEEKRQKGY-PAKWLGFELHPQTWKFQKHTLPEL-TKGTITL 250 + + N + + G L EK Q P +LG + ++ TLP + K T +L Sbjct 747 AALTDKVTNALTKEGLPLSPEKTQATPGPIHFLGQVISQDCITYE--TLPSINVKSTWSL 804 Query 251 NKLQKLVGELVWRQ---SIIGKSIPNILKLMEGDRELQSERKIEEVHVKEWEACRKKLEE 307 +LQ ++GEL W ++ S+ + + G R+ + K+ + V+ +K L Sbjct 805 AELQSMLGELQWVSKGTPVLRSSLHQLYLALRGHRDPRDTIKLTSIQVQALRTIQKALTL 864 Query 308 MEGNYYNKDKDVYGQLAWGDKAIEYIVYQEKGK-PL-WVNVVHNIKNL 353 + + + +++Q K K PL W++ H +L Sbjct 865 NCRSRLVNQLPILALIMLRPTGTTAVLFQTKQKWPLVWLHTPHPATSL 912 >RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName: Full=Matrix protein p19; Contains: RecName: Full=Core protein p16; Contains: RecName: Full=Capsid protein p35; AltName: Full=Capsid protein p34; Contains: RecName: Full=Probable nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease 17 kDa; Contains: RecName: Full=Protease 13 kDa; Contains: RecName: Full=G-patch peptide; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Squirrel monkey retrovirus] Sequence ID: P03364.3 Length: 1880 Range 1: 1023 to 1295 Score:145 bits(367), Expect:1e-34, Method:Compositional matrix adjust., Identities:94/278(34%), Positives:134/278(48%), Gaps:8/278(2%) Query 16 VPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRELN 75 V QWPLT EK ++ + + G + W NTPIF IKKKSG WR+L D R +N Sbjct 1023 VDQWPLTYEKTLAAIALVQEQLAAGHIEPTNSPW--NTPIFIIKKKSGSWRLLQDLRAVN 1080 Query 76 KQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPC 135 K + Q GLP P + H ++D+ D +FTIPL+ R Y F++ N P Sbjct 1081 KVMVPMGALQPGLPSPVAIPLNYHKIVIDLKDCFFTIPLHPEDRPYFAFSVPQINFQSPM 1140 Query 136 KRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHREI 195 RY WKVLPQG SP++ Q + + Q PE YMDDI + D + + Sbjct 1141 PRYQWKVLPQGMANSPTLCQKFVAAAIAPVRSQWPEAYILHYMDDILLACD-SAEAAKAC 1199 Query 196 VKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPELTKGTITLNKLQK 255 + + + YG + +K Q P +LGFELH Q + L T TLN QK Sbjct 1200 YAHIISCLTSYGLKIAPDKVQVSEPFSYLGFELHHQQVFTPRVCL--KTDHLKTLNDFQK 1257 Query 256 LVGELVWRQSIIGKSIPNILKL---MEGDRELQSERKI 290 L+G++ W + + ++ L ++GD S R + Sbjct 1258 LLGDIQWLRPYLKLPTSALVPLNNILKGDPNPLSVRAL 1295 >RecName: Full=Gag-Pro-Pol polyprotein; AltName: Full=Pr160Gag-Pro-Pol; Contains: RecName: Full=Matrix protein p19; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p15-pro; Short=NC'; Short=NC-pro; Contains: RecName: Full=Protease; Short=PR; Contains: RecName: Full=p1; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Human T-cell leukemia virus 3 (strain Pyl43)] Sequence ID: Q4U0X6.4 Length: 1440 Range 1: 570 to 912 Score:145 bits(366), Expect:1e-34, Method:Compositional matrix adjust., Identities:102/349(29%), Positives:168/349(48%), Gaps:15/349(4%) Query 14 PHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRE 73 P V Q+PL E+L+ LT+++ + +E + P N PIF +KK +GKWR + D R Sbjct 570 PEVSQFPLNPERLQALTDLVSRALEAKHI--EPYQGPGNNPIFPVKKPNGKWRFIHDLRA 627 Query 74 LNKQTEDLTEAQLGLPHPGGL-QKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNL 132 N T DL G P L Q H+ +D+ DA+F IPL ++ Y FTL PNN Sbjct 628 TNSLTRDLASPSPGPPDLTSLPQDLPHLRTIDLTDAFFQIPLPAVFQPYFAFTLPQPNNH 687 Query 133 GPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKH 192 GP RY W+VLPQG+K SP++++ + IL + P YMDDI + S +++ Sbjct 688 GPGTRYSWRVLPQGFKNSPTLFEQQLSHILAPVRKAFPNSLIIQYMDDILLASP-ALREL 746 Query 193 REIVKDLANYIAQYGFTLPEEKRQKGYPAK--WLGFELHPQTWKFQKHTLPELTKGTI-T 249 + + N + + G + EK Q P +LG + P ++ TLP + +I + Sbjct 747 TALTDKVTNALTKEGLPMSLEKTQ-ATPGSIHFLGQVISPDCITYE--TLPSIHVKSIWS 803 Query 250 LNKLQKLVGELVWRQ---SIIGKSIPNILKLMEGDRELQSERKIEEVHVKEWEACRKKLE 306 L +LQ ++GEL W ++ S+ + + G R+ + ++ V+ + +K L Sbjct 804 LAELQSMLGELQWVSKGTPVLRSSLHQLYLALRGHRDPRDTIELTSTQVQALKTIQKALA 863 Query 307 EMEGNYYNKDKDVYGQLAWGDKAIEYIVYQEKGK-PL-WVNVVHNIKNL 353 + + + +++Q K K PL W++ H +L Sbjct 864 LNCRSRLVSQLPILALIILRPTGTTAVLFQTKQKWPLVWLHTPHPATSL 912 >RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp24; Contains: RecName: Full=Phosphorylated protein pp18; Contains: RecName: Full=p12; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease 17 kDa; Contains: RecName: Full=Protease 13 kDa; Contains: RecName: Full=G-patch peptide; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Simian retrovirus 2] Sequence ID: P51517.2 Length: 1768 Range 1: 935 to 1224 Score:140 bits(353), Expect:6e-33, Method:Compositional matrix adjust., Identities:92/295(31%), Positives:146/295(49%), Gaps:8/295(2%) Query 16 VPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRELN 75 V QWPLT+EKL +++ + ++ G + ++ W NTPIF IKKKSGKWR+L D R +N Sbjct 935 VDQWPLTQEKLAAAQQLVQEQLQAGHIIESNSPW--NTPIFVIKKKSGKWRLLQDLRAVN 992 Query 76 KQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPC 135 + Q GLP P + + ++D+ D +FTIPL ++ F+L S N P Sbjct 993 ATMVLMGALQPGLPSPVAIPQGYFKIVIDLKDCFFTIPLQPVDQKRFAFSLPSTNFKQPM 1052 Query 136 KRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHREI 195 KRY WKVLPQG SP++ Q + +E + ++ YMDDI I L ++ + Sbjct 1053 KRYQWKVLPQGMANSPTLCQKYVAAAIEPVRKSWAQMYIIHYMDDILIAGKLG-EQVLQC 1111 Query 196 VKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPELTKGTITLNKLQK 255 L + G + EK Q P +LGF+++ QK + TLN QK Sbjct 1112 FAQLKQALTTTGLQIAPEKVQLQDPYTYLGFQINGPKITNQKAVIRR--DKLQTLNDFQK 1169 Query 256 LVGELVWRQSIIGKSIPN---ILKLMEGDRELQSERKIEEVHVKEWEACRKKLEE 307 L+G++ W + + + + + +++GD S R + E + + + E Sbjct 1170 LLGDINWLRPYLHLTTGDLKPLFDILKGDSNPNSPRSLSEAALASLQKVETAIAE 1224 Range 2: 643 to 761 Score:53.1 bits(126), Expect:9e-06, Method:Compositional matrix adjust., Identities:34/127(27%), Positives:61/127(48%), Gaps:12/127(9%) Query 560 AGYDLICPEEVTIEPGQ-VKCIPIELRLNLKKSQWAMIATKSSMAAKGVFTQGGIIDSGY 618 AG DL + P + + + L + + +I + S KG+ G+ID+ Y Sbjct 643 AGLDLCSTTHTVLTPEMGPQTLATGVYGPLPPNTFGLILGRGSTTVKGLQIYPGVIDNDY 702 Query 619 QGQIQVIMYNSNKIAVVIPQGRKFAQLILMD---KKHGKLEPWGESRKTERGEKGFGSTG 675 G+ +++ + I + IPQG + AQL+L+ H P+ RG+K FGS+ Sbjct 703 TGEFKIMARAISSI-ITIPQGERIAQLVLLPLLRTAHKIQHPY-------RGDKNFGSSD 754 Query 676 MYWIENI 682 ++W++ I Sbjct 755 IFWVQPI 761 >RecName: Full=Gag-Pro-Pol polyprotein; AltName: Full=Pr180; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp24; Contains: RecName: Full=Phosphorylated protein pp18; Contains: RecName: Full=p12; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease 17 kDa; Contains: RecName: Full=Protease 13 kDa; Contains: RecName: Full=G-patch peptide; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Mason-Pfizer monkey virus] Sequence ID: P07572.2 Length: 1771 Range 1: 938 to 1234 Score:135 bits(340), Expect:2e-31, Method:Compositional matrix adjust., Identities:92/302(30%), Positives:148/302(49%), Gaps:8/302(2%) Query 16 VPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRELN 75 V QWPLT +KL +++ + +E G + ++ W NTPIF IKKKSGKWR+L D R +N Sbjct 938 VDQWPLTNDKLAAAQQLVQEQLEAGHITESSSPW--NTPIFVIKKKSGKWRLLQDLRAVN 995 Query 76 KQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPC 135 + Q GLP P + + I+D+ D +F+IPL+ ++ F+L S N P Sbjct 996 ATMVLMGALQPGLPSPVAIPQGYLKIIIDLKDCFFSIPLHPSDQKRFAFSLPSTNFKEPM 1055 Query 136 KRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHREI 195 +R+ WKVLPQG SP++ Q + + ++ YMDDI I + ++ + Sbjct 1056 QRFQWKVLPQGMANSPTLCQKYVATAIHKVRHAWKQMYIIHYMDDILIAGK-DGQQVLQC 1114 Query 196 VKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPELTKGTITLNKLQK 255 L + G + EK Q P +LGFEL+ QK + + TLN QK Sbjct 1115 FDQLKQELTAAGLHIAPEKVQLQDPYTYLGFELNGPKITNQKAVIRK--DKLQTLNDFQK 1172 Query 256 LVGELVWRQSIIGKSIPNILKL---MEGDRELQSERKIEEVHVKEWEACRKKLEEMEGNY 312 L+G++ W + + + ++ L ++GD + S R + + + E + E + Sbjct 1173 LLGDINWLRPYLKLTTGDLKPLFDTLKGDSDPNSHRSLSKEALASLEKVETAIAEQFVTH 1232 Query 313 YN 314 N Sbjct 1233 IN 1234 Range 2: 646 to 777 Score:61.2 bits(147), Expect:3e-08, Method:Compositional matrix adjust., Identities:39/137(28%), Positives:68/137(49%), Gaps:6/137(4%) Query 560 AGYDLICPEEVTIEPGQ-VKCIPIELRLNLKKSQWAMIATKSSMAAKGVFTQGGIIDSGY 618 AG DL + P + + + L + + +I +SS+ KG+ G+ID+ Y Sbjct 646 AGLDLCSTSHTVLTPEMGPQALSTGIYGPLPPNTFGLILGRSSITMKGLQVYPGVIDNDY 705 Query 619 QGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGSTGMYW 678 G+I+++ N I V + QG + AQLIL+ +E + ++ RG+ FGS+ +YW Sbjct 706 TGEIKIMAKAVNNI-VTVSQGNRIAQLILLP----LIETDNKVQQPYRGQGSFGSSDIYW 760 Query 679 IENIPLAEEDHTKWHQD 695 ++ I + T W D Sbjct 761 VQPITCQKPSLTLWLDD 777 >RecName: Full=Gag-Pro-Pol polyprotein; AltName: Full=Pr160Gag-Pro-Pol; Contains: RecName: Full=Matrix protein p19; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p15-pro; Short=NC'; Short=NC-pro; Contains: RecName: Full=Protease; Short=PR; Contains: RecName: Full=p1; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Human T-lymphotropic virus 2] Sequence ID: P03363.4 Length: 1461 Range 1: 588 to 931 Score:131 bits(329), Expect:4e-30, Method:Compositional matrix adjust., Identities:98/350(28%), Positives:169/350(48%), Gaps:16/350(4%) Query 14 PHVPQWPLT-EEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFR 72 P V Q+PL E+L+ L +++ K +E G + P N P+F +KK +GKWR + D R Sbjct 588 PQVDQFPLNLPERLQALNDLVSKALEAGHI--EPYSGPGNNPVFPVKKPNGKWRFIHDLR 645 Query 73 ELNKQTEDLTEAQLGLPHPGGLQKK-KHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNN 131 N T LT G P L H+ +D+ DA+F IPL + Y+ Y FT+ P N Sbjct 646 ATNAITTTLTSPSPGPPDLTSLPTALPHLQTIDLTDAFFQIPLPKQYQPYFAFTIPQPCN 705 Query 132 LGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKK 191 GP RY W VLPQG+K SP++++ + +L + P YMDDI + S ++ Sbjct 706 YGPGTRYAWTVLPQGFKNSPTLFEQQLAAVLNPMRKMFPTSTIVQYMDDILLASPTN-EE 764 Query 192 HREIVKDLANYIAQYGFTLPEEKRQKGYPA--KWLGFELHPQTWKFQKH-TLPELTKGTI 248 +++ + + +G + +EK Q+ P ++LG + P ++ T+P K Sbjct 765 LQQLSQLTLQALTTHGLPISQEKTQQT-PGQIRFLGQVISPNHITYESTPTIP--IKSQW 821 Query 249 TLNKLQKLVGELVWRQ---SIIGKSIPNILKLMEGDRELQSERKIEEVHVKEWEACRKKL 305 TL +LQ ++GE+ W I+ K + ++ + G R+ ++ + + A ++ L Sbjct 822 TLTELQVILGEIQWVSKGTPILRKHLQSLYSALHGYRDPRACITLTPQQLHALHAIQQAL 881 Query 306 EEMEGNYYNKDKDVYGQLAWGDKAIEYIVYQEKGK-PL-WVNVVHNIKNL 353 + N + G ++ +++Q K PL W++ H +L Sbjct 882 QHNCRGRLNPALPLLGLISLSTSGTTSVIFQPKQNWPLAWLHTPHPPTSL 931 >RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp24; Contains: RecName: Full=Phosphorylated protein pp18; Contains: RecName: Full=p12; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease 17 kDa; Contains: RecName: Full=Protease 13 kDa; Contains: RecName: Full=G-patch peptide; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Simian retrovirus 1] Sequence ID: P04025.2 Length: 1772 Range 1: 939 to 1213 Score:130 bits(326), Expect:1e-29, Method:Compositional matrix adjust., Identities:89/280(32%), Positives:140/280(50%), Gaps:8/280(2%) Query 16 VPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRELN 75 V QWPLT EKL +++ + +E G + ++ W NTPIF IKKKSGKWR+L D R +N Sbjct 939 VDQWPLTSEKLAAAQQLVQEQLEAGHITESNSPW--NTPIFVIKKKSGKWRLLQDLRAVN 996 Query 76 KQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPC 135 + Q GLP P + + I+D+ D +F+IPL+ ++ F+L S N P Sbjct 997 ATMVLMGALQPGLPSPVAIPQGYLKIIIDLKDCFFSIPLHPSDQKRFAFSLPSTNFKEPM 1056 Query 136 KRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHREI 195 +R+ WKVLPQ SP++ Q + + ++ YMDDI I + ++ + Sbjct 1057 QRFQWKVLPQRMANSPTLCQKYVATAIHKVRHAWKQMYIIHYMDDILIAGK-DGQQVLQC 1115 Query 196 VKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPELTKGTITLNKLQK 255 L + G + EK Q P +LGFEL+ QK + + TLN QK Sbjct 1116 FDQLKQELTIAGLHIAPEKIQLQDPYTYLGFELNGPKITNQKAVIRK--DKLQTLNDFQK 1173 Query 256 LVGELVWRQSIIGKSIPNILKL---MEGDRELQSERKIEE 292 L+G++ W + + + ++ L ++GD S R + + Sbjct 1174 LLGDINWLRPYLKLTTADLKPLFDTLKGDSNPNSHRSLSK 1213 Range 2: 646 to 778 Score:63.5 bits(153), Expect:6e-09, Method:Compositional matrix adjust., Identities:40/138(29%), Positives:69/138(50%), Gaps:6/138(4%) Query 559 DAGYDLICPEEVTIEPGQ-VKCIPIELRLNLKKSQWAMIATKSSMAAKGVFTQGGIIDSG 617 AG DL + P + + + L + + +I +SS+ KG+ G+ID+ Sbjct 646 SAGLDLSSTSHTVLTPEMGPQALSTGIYGPLPPNTFGLILGRSSITIKGLQVYPGVIDND 705 Query 618 YQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGSTGMY 677 Y G+I+++ N I V +PQG + AQLIL+ +E + ++ RG+ FGS+ +Y Sbjct 706 YTGEIKIMAKAVNNI-VTVPQGNRIAQLILLP----LIETDNKVQQPYRGQGSFGSSDIY 760 Query 678 WIENIPLAEEDHTKWHQD 695 W++ I + T W D Sbjct 761 WVQPITCQKPSLTLWLDD 778 >RecName: Full=Gag-Pro-Pol polyprotein; AltName: Full=Pr160Gag-Pro-Pol; Contains: RecName: Full=Matrix protein p19; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p15-pro; Short=NC'; Short=NC-pro; Contains: RecName: Full=Protease; Short=PR; Contains: RecName: Full=p1; Contains: RecName: Full=Reverse transcriptase/ribonuclease H, p49 subunit; Short=p49 RT; Contains: RecName: Full=Reverse transcriptase/ribonuclease H, p62 subunit; Short=p62 RT; Contains: RecName: Full=Integrase; Short=IN [Human T-cell lymphotrophic virus type 1 (strain ATK)] Sequence ID: P03362.3 Length: 1462 Range 1: 591 to 845 Score:127 bits(319), Expect:8e-29, Method:Compositional matrix adjust., Identities:86/268(32%), Positives:136/268(50%), Gaps:20/268(7%) Query 14 PHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRE 73 P + Q+PL E+L+ L ++ K +E G + P N P+F +KK +G WR + D R Sbjct 591 PQISQFPLNPERLQALQHLVRKALEAGHI--EPYTGPGNNPVFPVKKANGTWRFIHDLRA 648 Query 74 LNKQTEDLTEAQLGLPHPGGLQKK-KHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNL 132 N T DL+ + G P L H+ +D+ DA+F IPL + ++ Y FT+ N Sbjct 649 TNSLTIDLSSSSPGPPDLSSLPTTLAHLQTIDLRDAFFQIPLPKQFQPYFAFTVPQQCNY 708 Query 133 GPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKH 192 GP RY WKVLPQG+K SP++++ + IL+ Q P+ YMDDI + S H Sbjct 709 GPGTRYAWKVLPQGFKNSPTLFEMQLAHILQPIRQAFPQCTILQYMDDILLAS----PSH 764 Query 193 REIV----KDLANYIAQYGFTLPEEKRQKGY-PAKWLGFELHPQTWKFQK-HTLPELTKG 246 +++ +A+ I+ +G + E K Q+ K+LG + P + T+P + Sbjct 765 EDLLLLSEATMASLIS-HGLPVSENKTQQTPGTIKFLGQIISPNHLTYDAVPTVP--IRS 821 Query 247 TITLNKLQKLVGELVWRQSIIGKSIPNI 274 L +LQ L+GE+ W + K P + Sbjct 822 RWALPELQALLGEIQW----VSKGTPTL 845 >RecName: Full=Gag-Pro-Pol polyprotein; AltName: Full=Pr160Gag-Pro-Pol; Contains: RecName: Full=Matrix protein p19; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p15-pro; Short=NC'; Short=NC-pro; Contains: RecName: Full=Protease; Short=PR; Contains: RecName: Full=p1; Contains: RecName: Full=Reverse transcriptase/ribonuclease H, p49 subunit; Short=p49 RT; Contains: RecName: Full=Reverse transcriptase/ribonuclease H, p62 subunit; Short=p62 RT; Contains: RecName: Full=Integrase; Short=IN [Human T-cell lymphotrophic virus type 1 (Caribbean isolate)] Sequence ID: P14078.3 Length: 1462 Range 1: 591 to 845 Score:126 bits(317), Expect:1e-28, Method:Compositional matrix adjust., Identities:83/264(31%), Positives:133/264(50%), Gaps:12/264(4%) Query 14 PHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRE 73 P + Q+PL E+L+ L ++ K +E G + P N P+F +KK +G WR + D R Sbjct 591 PEISQFPLNPERLQALQHLVRKALEAGHI--EPYTGPGNNPVFPVKKANGTWRFIHDLRA 648 Query 74 LNKQTEDLTEAQLGLPHPGGLQKK-KHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNL 132 N T DL+ + G P L H+ +D+ DA+F IPL + ++ Y FT+ N Sbjct 649 TNSLTIDLSSSSPGPPDLSSLPTTLAHLQTIDLKDAFFQIPLPKQFQPYFAFTVPQQCNY 708 Query 133 GPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKH 192 GP RY W+VLPQG+K SP++++ + IL+ Q P+ YMDDI + S Sbjct 709 GPGTRYAWRVLPQGFKNSPTLFEMQLAHILQPIRQAFPQCTILQYMDDILLASPSHADLQ 768 Query 193 REIVKDLANYIAQYGFTLPEEKRQKGY-PAKWLGFELHPQTWKFQKHTLPEL-TKGTITL 250 +A+ I+ +G + E K Q+ K+LG + P + +P++ + L Sbjct 769 LLSEATMASLIS-HGLPVSENKTQQTPGTIKFLGQIISPNHLTYD--AVPKVPIRSRWAL 825 Query 251 NKLQKLVGELVWRQSIIGKSIPNI 274 +LQ L+GE+ W + K P + Sbjct 826 PELQALLGEIQW----VSKGTPTL 845 >RecName: Full=Gag-Pro-Pol polyprotein; AltName: Full=Pr160Gag-Pro-Pol; Contains: RecName: Full=Matrix protein p19; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p15-pro; Short=NC'; Short=NC-pro; Contains: RecName: Full=Protease; Short=PR; Contains: RecName: Full=p1; Contains: RecName: Full=Reverse transcriptase/ribonuclease H, p49 subunit; Short=p49 RT; Contains: RecName: Full=Reverse transcriptase/ribonuclease H, p62 subunit; Short=p62 RT; Contains: RecName: Full=Integrase; Short=IN [HTLV-1 isolate Mel 15] Sequence ID: P0C211.2 Length: 1462 Range 1: 591 to 845 Score:126 bits(316), Expect:2e-28, Method:Compositional matrix adjust., Identities:84/264(32%), Positives:134/264(50%), Gaps:12/264(4%) Query 14 PHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRE 73 P + Q+PL E+L+ L ++ K +E G + P N P+F +KK +G WR + D R Sbjct 591 PEISQFPLNPERLQALQHLVRKALEAGHI--EPYTGPGNNPVFPVKKANGTWRFIHDLRA 648 Query 74 LNKQTEDLTEAQLGLPHPGGLQKK-KHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNL 132 N T DL+ + G P L H+ +D+ DA+F IPL + ++ Y FT+ N Sbjct 649 TNSLTVDLSSSSPGPPDLSSLPTTLAHLQTIDLKDAFFQIPLPKQFQPYFAFTVPQQCNY 708 Query 133 GPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKH 192 GP RY WKVLPQG+K SP++++ + IL+ Q P+ YMDDI + S Sbjct 709 GPGTRYAWKVLPQGFKNSPTLFEMQLASILQPIRQAFPQCVILQYMDDILLASPSPEDLQ 768 Query 193 REIVKDLANYIAQYGFTLPEEKRQKGY-PAKWLGFELHPQTWKFQK-HTLPELTKGTITL 250 + +A+ I+ +G + ++K Q+ K+LG + P + T+P + L Sbjct 769 QLSEATMASLIS-HGLPVSQDKTQQTPGTIKFLGQIISPNHITYDAVPTVP--IRSRWAL 825 Query 251 NKLQKLVGELVWRQSIIGKSIPNI 274 +LQ L+GE+ W + K P + Sbjct 826 PELQALLGEIQW----VSKGTPTL 845 >RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p12-pro; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Bovine leukemia virus (JAPANESE ISOLATE BLV-1)] Sequence ID: P03361.2 Length: 1416 Range 1: 570 to 809 Score:125 bits(315), Expect:2e-28, Method:Compositional matrix adjust., Identities:79/245(32%), Positives:128/245(52%), Gaps:8/245(3%) Query 21 LTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRELNKQTED 80 L E+L+ L +++ + +E G + +P N P+F ++K +G WR + D R N T+ Sbjct 570 LNLERLQALQDLVHRSLEAGYI--SPWDGPGNNPVFPVRKPNGAWRFVHDLRATNALTKP 627 Query 81 LTEAQLGLPHPGGL-QKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPCKRYY 139 + G P + H+ LD+ DA+F IP+ + +R Y FTL SP L P +R+ Sbjct 628 IPALSPGPPDLTAIPTHPPHIICLDLKDAFFQIPVEDRFRFYLSFTLPSPGGLQPHRRFA 687 Query 140 WKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHREIVKDL 199 W+VLPQG+ SP++++ +QE L + YMDDI S E ++ + + L Sbjct 688 WRVLPQGFINSPALFERALQEPLRQVSAAFSQSLLVSYMDDILYASPTE-EQRSQCYQAL 746 Query 200 ANYIAQYGFTLPEEK-RQKGYPAKWLGFELHPQTWKFQKHTLPEL-TKGTITLNKLQKLV 257 A + GF + EK Q P +LG +H Q +Q +LP L I+L++LQ ++ Sbjct 747 AARLRDLGFQVASEKTSQTPSPVPFLGQMVHEQIVTYQ--SLPTLQISSPISLHQLQAVL 804 Query 258 GELVW 262 G+L W Sbjct 805 GDLQW 809 >RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p12-pro; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Bovine leukemia virus (AUSTRALIAN ISOLATE)] Sequence ID: P25059.2 Length: 1416 Range 1: 570 to 809 Score:124 bits(311), Expect:6e-28, Method:Compositional matrix adjust., Identities:77/245(31%), Positives:130/245(53%), Gaps:8/245(3%) Query 21 LTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRELNKQTED 80 L E+L+ L +++ + +E G + +P N P+F ++K +G WR + D R N T+ Sbjct 570 LNLERLQALQDLVHRSLEAGYI--SPWDGPGNNPVFPVRKPNGAWRFVHDLRVTNALTKP 627 Query 81 LTEAQLGLPHPGGLQKK-KHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPCKRYY 139 + G P + H+ LD+ DA+F IP+ + +R Y FTL +P L P +R+ Sbjct 628 IPALSPGPPDLTAIPTHLPHIICLDLKDAFFQIPVEDRFRSYFAFTLPTPGGLQPHRRFA 687 Query 140 WKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHREIVKDL 199 W+VLPQG+ SP++++ +QE L + YMDDI S E ++ + + + Sbjct 688 WRVLPQGFINSPALFERALQEPLRQVSAAFSQSLLVSYMDDILYVSPTE-EQRLQCYQTM 746 Query 200 ANYIAQYGFTLPEEK-RQKGYPAKWLGFELHPQTWKFQKHTLPEL-TKGTITLNKLQKLV 257 A ++ GF + EK RQ P +LG +H + +Q +LP L I+L++LQ ++ Sbjct 747 AAHLRDLGFQVASEKTRQTPSPVPFLGQMVHERMVTYQ--SLPTLQISSPISLHQLQTVL 804 Query 258 GELVW 262 G+L W Sbjct 805 GDLQW 809 >RecName: Full=Endogenous retrovirus group K member 9 Pol protein; AltName: Full=HERV-K(C6) Gag-Pol protein; AltName: Full=HERV-K109 Gag-Pol protein; AltName: Full=HERV-K_6q14.1 provirus ancestral Gag-Pol polyprotein; Includes: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Includes: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=p66 RT [Homo sapiens] Sequence ID: P63128.3 Length: 1117 Range 1: 959 to 1104 Score:110 bits(276), Expect:9e-24, Method:Compositional matrix adjust., Identities:60/148(41%), Positives:88/148(59%), Gaps:2/148(1%) Query 16 VPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRELN 75 V QWPL ++KL+ L + ++ +E+G + + W N+P+F I+KKSGKWRML D R +N Sbjct 959 VNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPW--NSPVFVIQKKSGKWRMLTDLRAVN 1016 Query 76 KQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPC 135 + + Q GLP P + K + I+D+ D +FTIPL E E FT+ + NN P Sbjct 1017 AVIQPMGPLQPGLPSPAMIPKDWPLIIIDLKDCFFTIPLAEQDCEKFAFTIPAINNKEPA 1076 Query 136 KRYYWKVLPQGWKLSPSVYQFTMQEILE 163 R+ WKVLPQG SP++ Q + L+ Sbjct 1077 TRFQWKVLPQGMLNSPTICQTFVGRALQ 1104 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p10; Short=MA; Contains: RecName: Full=p20; Contains: RecName: Full=Capsid protein p25; Short=CA; Contains: RecName: Full=Nucleocapsid protein p14; Short=NC-pol; Contains: RecName: Full=Protease p15; Short=PR; Contains: RecName: Full=Reverse transcriptase/ribonuclease H p90; Short=RT; Contains: RecName: Full=Integrase p46; Short=IN [Walleye dermal sarcoma virus] Sequence ID: O92815.2 Length: 1752 Range 1: 758 to 953 Score:93.2 bits(230), Expect:4e-18, Method:Compositional matrix adjust., Identities:67/208(32%), Positives:109/208(52%), Gaps:19/208(9%) Query 1 PITKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKK 60 PIT +K+K+ + P + Q+PL ++K +GL +I L +G L K H CNTPIF IKK Sbjct 758 PIT-IKIKDNASLPSIRQYPLPKDKTEGLRPLISSLENQGILIKC--HSPCNTPIFPIKK 814 Query 61 KS-GKWRMLIDFRELNKQTEDLTEAQLGLPHP--GGLQKKKH-VTILDIGDAYFTIPLYE 116 ++RM+ D R +N LT A + P L H T++D+ +A+F++P+++ Sbjct 815 AGRDEYRMIHDLRAINNIVAPLT-AVVASPTTVLSNLAPSLHWFTVIDLSNAFFSVPIHK 873 Query 117 PYREYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGI 176 + FT +Y W VLPQG+ SP+++ + + L I+ + I Sbjct 874 DSQYLFAFTFEG-------HQYTWTVLPQGFIHSPTLFSQALYQSLHK-IKFKISSEICI 925 Query 177 YMDDIYIGS---DLEIKKHREIVKDLAN 201 YMDD+ I S D +K +++ LA+ Sbjct 926 YMDDVLIASKDRDTNLKDTAVMLQHLAS 953 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Rabbitpox virus Utrecht] Sequence ID: Q6RZR1.1 Length: 147 Range 1: 12 to 146 Score:84.0 bits(206), Expect:7e-18, Method:Composition-based stats., Identities:46/135(34%), Positives:74/135(54%), Gaps:2/135(1%) Query 544 FLAKEGEGILPKREED--AGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSS 601 F+ + P R+ AGYDL + TI PG+ + I ++ +++ K + IA +S Sbjct 12 FVKETNRAKSPTRQSPYAAGYDLYSAYDYTIPPGERQLIKTDISMSMPKFCYGRIAPRSG 71 Query 602 MAAKGVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGES 661 ++ KG+ GG+ID Y+G I VI+ N+ K + G + AQLI + +LE Sbjct 72 LSLKGIDIGGGVIDEDYRGNIGVILINNGKCTFNVNTGDRIAQLIYQRIYYPELEEVQSL 131 Query 662 RKTERGEKGFGSTGM 676 T+RG++GFGSTG+ Sbjct 132 DSTDRGDQGFGSTGL 146 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Monkeypox virus] Sequence ID: A0A7H0DN19.1 Length: 151 Range 1: 16 to 150 Score:84.0 bits(206), Expect:9e-18, Method:Composition-based stats., Identities:46/135(34%), Positives:74/135(54%), Gaps:2/135(1%) Query 544 FLAKEGEGILPKREED--AGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSS 601 F+ + P R+ AGYDL + TI PG+ + I ++ +++ K + IA +S Sbjct 16 FVKETNRAKSPTRQSPGAAGYDLYSAYDYTIPPGERQLIKTDISMSMPKFCYGRIAPRSG 75 Query 602 MAAKGVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGES 661 ++ KG+ GG+ID Y+G I VI+ N+ K + G + AQLI + +LE Sbjct 76 LSLKGIDIGGGVIDEDYRGSIGVILINNGKCTFNVNTGDRIAQLIYQRIYYPELEEVQSL 135 Query 662 RKTERGEKGFGSTGM 676 T+RG++GFGSTG+ Sbjct 136 DSTDRGDQGFGSTGL 150 >RecName: Full=Pro-Pol polyprotein; AltName: Full=Pr125Pol; Contains: RecName: Full=Protease/Reverse transcriptase/ribonuclease H; AltName: Full=p87Pro-RT-RNaseH; Contains: RecName: Full=Protease/Reverse transcriptase; AltName: Full=p65Pro-RT; Contains: RecName: Full=Ribonuclease H; Short=RNase H; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=p42In [Human spumaretrovirus] Sequence ID: P14350.2 Length: 1143 Range 1: 149 to 412 Score:91.3 bits(225), Expect:1e-17, Method:Compositional matrix adjust., Identities:81/287(28%), Positives:147/287(51%), Gaps:34/287(11%) Query 4 KVKLKEGCTGPHVP----QWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIK 59 K++ TG + P Q+P+ + + +ID L+++G L P + T NTP++ + Sbjct 149 KIRPHNIATGDYPPRPQKQYPINPKAKPSIQIVIDDLLKQGVL--TPQNSTMNTPVYPVP 206 Query 60 KKSGKWRMLIDFRELNKQTEDLTEAQLGLPHPGG----LQKKKHVTILDIGDAYFTIPLY 115 K G+WRM++D+RE+NK T LT AQ H G + ++K+ T LD+ + ++ P+ Sbjct 207 KPDGRWRMVLDYREVNK-TIPLTAAQNQ--HSAGILATIVRQKYKTTLDLANGFWAHPIT 263 Query 116 EPYREYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFG 175 T FT K+Y W LPQG+ SP++ FT + D +++ P +Q Sbjct 264 PESYWLTAFTWQG-------KQYCWTRLPQGFLNSPAL--FTADVV--DLLKEIPNVQ-- 310 Query 176 IYMDDIYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGY-PAKWLGFELHPQTWK 234 +Y+DDIY+ D + K+H + ++ + + Q G+ + +K + G ++LGF + + Sbjct 311 VYVDDIYLSHD-DPKEHVQQLEKVFQILLQAGYVVSLKKSEIGQKTVEFLGFNITKEGRG 369 Query 235 FQKHTLPELTKGTI--TLNKLQKLVGELVWRQSIIGKSIPNILKLME 279 +L T L +LQ ++G L + ++ IPN +L++ Sbjct 370 LTDTFKTKLLNITPPKDLKQLQSILGLLNFARNF----IPNFAELVQ 412 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Vaccinia virus Copenhagen] Sequence ID: P68634.1 Length: 147 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Vaccinia virus L-IPV] Sequence ID: P68635.1 Length: 147 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Vaccinia virus Ankara] Sequence ID: Q76RE7.1 Length: 147 Range 1: 12 to 146 Score:83.6 bits(205), Expect:1e-17, Method:Composition-based stats., Identities:46/135(34%), Positives:73/135(54%), Gaps:2/135(1%) Query 544 FLAKEGEGILPKREED--AGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSS 601 F+ + P R+ AGYDL + TI PG+ + I ++ +++ K + IA +S Sbjct 12 FVKETNRAKSPTRQSPGAAGYDLYSAYDYTIPPGERQLIKTDISMSMPKICYGRIAPRSG 71 Query 602 MAAKGVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGES 661 ++ KG+ GG+ID Y+G I VI+ N+ K + G + AQLI + +LE Sbjct 72 LSLKGIDIGGGVIDEDYRGNIGVILINNGKCTFNVNTGDRIAQLIYQRIYYPELEEVQSL 131 Query 662 RKTERGEKGFGSTGM 676 T RG++GFGSTG+ Sbjct 132 DSTNRGDQGFGSTGL 146 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Vaccinia virus WR] Sequence ID: P17374.2 Length: 147 Range 1: 12 to 146 Score:83.6 bits(205), Expect:1e-17, Method:Composition-based stats., Identities:46/135(34%), Positives:73/135(54%), Gaps:2/135(1%) Query 544 FLAKEGEGILPKREED--AGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSS 601 F+ + P R+ AGYDL + TI PG+ + I ++ +++ K + IA +S Sbjct 12 FVKETNRAKSPTRQSPYAAGYDLYSAYDYTIPPGERQLIKTDISMSMPKFCYGRIAPRSG 71 Query 602 MAAKGVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGES 661 ++ KG+ GG+ID Y+G I VI+ N+ K + G + AQLI + +LE Sbjct 72 LSLKGIDIGGGVIDEDYRGNIGVILINNGKCTFNVNTGDRIAQLIYQRIYYPELEEVQSL 131 Query 662 RKTERGEKGFGSTGM 676 T RG++GFGSTG+ Sbjct 132 DSTNRGDQGFGSTGL 146 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Cowpox virus (strain GRI-90)] Sequence ID: P87630.1 Length: 147 Range 1: 12 to 146 Score:83.2 bits(204), Expect:2e-17, Method:Composition-based stats., Identities:46/135(34%), Positives:73/135(54%), Gaps:2/135(1%) Query 544 FLAKEGEGILPKREED--AGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSS 601 F+ + P R+ AGYDL + TI PG+ + I ++ +++ K + IA +S Sbjct 12 FVKETNRAKSPTRQSPGAAGYDLYSAYDYTIPPGERQLIKTDISMSMPKFCYGRIAPRSG 71 Query 602 MAAKGVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGES 661 ++ KG+ GG+ID Y+G I VI+ N+ K + G + AQLI + +LE Sbjct 72 LSLKGIDIGGGVIDEDYRGNIGVILINNGKCTFNVNTGDRIAQLIYQRIYYPELEEVQSL 131 Query 662 RKTERGEKGFGSTGM 676 T+RG +GFGSTG+ Sbjct 132 DSTDRGAQGFGSTGL 146 >RecName: Full=Pro-Pol polyprotein; AltName: Full=Pr125Pol; Contains: RecName: Full=Protease/Reverse transcriptase/ribonuclease H; AltName: Full=p87Pro-RT-RNaseH; Contains: RecName: Full=Protease/Reverse transcriptase; AltName: Full=p65Pro-RT; Contains: RecName: Full=Ribonuclease H; Short=RNase H; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=p42In [Pan troglodytes foamy virus] Sequence ID: Q87040.1 Length: 1146 Range 1: 149 to 422 Score:90.1 bits(222), Expect:3e-17, Method:Compositional matrix adjust., Identities:82/297(28%), Positives:148/297(49%), Gaps:34/297(11%) Query 4 KVKLKEGCTGPHVP----QWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIK 59 K++ TG + P Q+P+ + + +ID L+++G L P + T NTP++ + Sbjct 149 KIRPHNIATGDYPPRPQKQYPINPKAKPSIQIVIDDLLKQGVL--TPQNSTMNTPVYPVP 206 Query 60 KKSGKWRMLIDFRELNKQTEDLTEAQLGLPHPGG----LQKKKHVTILDIGDAYFTIPLY 115 K G+WRM++D+RE+NK T LT AQ H G + ++K+ T LD+ + ++ P+ Sbjct 207 KPDGRWRMVLDYREVNK-TIPLTAAQNQ--HSAGILATIVRQKYKTTLDLANGFWAHPIT 263 Query 116 EPYREYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFG 175 T FT K+Y W LPQG+ SP++ FT + D +++ P +Q Sbjct 264 PDSYWLTAFTWQG-------KQYCWTRLPQGFLNSPAL--FTADAV--DLLKEVPNVQ-- 310 Query 176 IYMDDIYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKG-YPAKWLGFELHPQTWK 234 +Y+DDIY+ D +H + ++ + + Q G+ + +K + G ++LGF + + Sbjct 311 VYVDDIYLSHD-NPHEHIQQLEKVFQILLQAGYVVSLKKSEIGQRTVEFLGFNITKEGRG 369 Query 235 FQKHTLPELTKGTI--TLNKLQKLVGELVWRQSIIGKSIPNILKLMEGDRELQSERK 289 +L T L +LQ ++G L + ++ IPN +L++ L + K Sbjct 370 LTDTFKTKLLNVTPPKDLKQLQSILGLLNFARNF----IPNFAELVQTLYNLIASSK 422 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Variola virus human/India/Ind3/1967] Sequence ID: P0DSZ7.1 Length: 147 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Variola virus] Sequence ID: P0DSZ8.1 Length: 147 Range 1: 12 to 146 Score:82.0 bits(201), Expect:4e-17, Method:Composition-based stats., Identities:45/135(33%), Positives:74/135(54%), Gaps:2/135(1%) Query 544 FLAKEGEGILPKREED--AGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSS 601 F+ + P R+ AGYDL + TI PG+ + I ++ +++ K + IA +S Sbjct 12 FVKETNRAKSPTRQSPYAAGYDLYSAYDYTIPPGERQLIKTDISMSMPKFCYGRIAPRSG 71 Query 602 MAAKGVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGES 661 ++ KG+ GG+ID Y+G I VI+ N+ K + G + AQLI + +L+ Sbjct 72 LSLKGIDIGGGVIDEDYRGNIGVILINNGKYTFNVNTGDRIAQLIYQRIYYPELKEVQSL 131 Query 662 RKTERGEKGFGSTGM 676 T+RG++GFGSTG+ Sbjct 132 DSTDRGDQGFGSTGL 146 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Camelpox virus CMS] Sequence ID: Q775Z7.1 Length: 147 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Camelpox virus M-96] Sequence ID: Q8V2Y0.1 Length: 147 Range 1: 12 to 146 Score:80.9 bits(198), Expect:1e-16, Method:Composition-based stats., Identities:45/135(33%), Positives:73/135(54%), Gaps:2/135(1%) Query 544 FLAKEGEGILPKREED--AGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSS 601 F+ + P R+ AGYDL TI PG+ + I ++ +++ K + IA +S Sbjct 12 FVKETNRAKSPTRQSPYAAGYDLYSAYYYTIPPGERQLIKTDISMSMPKFCYGRIAPRSG 71 Query 602 MAAKGVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGES 661 ++ KG+ GG+ID Y+G I VI+ N+ K + G + AQLI + +L+ Sbjct 72 LSLKGIDIGGGVIDEDYRGNIGVILINNGKCTFNVNTGDRIAQLIYQRIYYPELKEVQSL 131 Query 662 RKTERGEKGFGSTGM 676 T+RG++GFGSTG+ Sbjct 132 DSTDRGDQGFGSTGL 146 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Reticuloendotheliosis virus] Sequence ID: P03360.2 Length: 1152 Range 1: 138 to 352 Score:86.7 bits(213), Expect:4e-16, Method:Compositional matrix adjust., Identities:64/222(29%), Positives:107/222(48%), Gaps:14/222(6%) Query 15 HVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SGKWRMLIDFRE 73 V Q+P+T E + L E I K G L P H NTP+ ++K + ++RM+ D RE Sbjct 138 RVRQYPITLEAKRSLRETIRKFRAAGIL--RPVHSPWNTPLLPVRKSGTSEYRMVQDLRE 195 Query 74 LNKQTEDLTEAQLGLPHPGGL-----QKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLS 128 +NK+ E + +P+P L + ++LD+ DA+F IPL + F Sbjct 196 VNKRVETIHPT---VPNPYTLLSLLPPDRIWYSVLDLKDAFFCIPLAPESQLIFAFEWAD 252 Query 129 PNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLE 188 G + W LPQG+K SP+++ + L+ + HP + Y+DD+ I +D + Sbjct 253 AEE-GESGQLTWTRLPQGFKNSPTLFDEALNRDLQGFRLDHPSVSLLQYVDDLLIAADTQ 311 Query 189 IKKHREIVKDLANYIAQYGFTLPEEKRQKGY-PAKWLGFELH 229 +DL +A+ G+ + +K Q +LGF++H Sbjct 312 -AACLSATRDLLMTLAELGYRVSGKKAQLCQEEVTYLGFKIH 352 >RecName: Full=Pol polyprotein; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Feline endogenous virus ECE1] Sequence ID: P31792.1 Length: 1046 Range 1: 25 to 224 Score:85.5 bits(210), Expect:8e-16, Method:Compositional matrix adjust., Identities:58/206(28%), Positives:103/206(50%), Gaps:15/206(7%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGK 64 + LK + Q+P+++E G+ I + +E G L W NTP+ +KK + Sbjct 25 IDLKPTAMPVSIRQYPMSKEAHMGIQPHITRFLELGVLRPCRSPW--NTPLLPVKKPGTR 82 Query 65 -WRMLIDFRELNKQTEDLTEAQLGLPHPGGL-----QKKKHVTILDIGDAYFTIPLYEPY 118 +R + D RE+NK+T D+ +P+P L + T+LD+ DA+F +PL Sbjct 83 DYRPVQDLREVNKRTMDIHPT---VPNPYNLLSTLSPDRTWYTVLDLKDAFFCLPLAPQS 139 Query 119 REYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYM 178 +E F P G + W LPQG+K SP+++ + L D+ QHPE+ Y+ Sbjct 140 QELFAFEWRDPER-GISGQLTWTRLPQGFKNSPTLFDEALHRDLTDFRTQHPEVTLLQYV 198 Query 179 DDIYIGSDLE---IKKHREIVKDLAN 201 DD+ + + + I+ + ++++L + Sbjct 199 DDLLLAAPTKEACIRGTKHLLRELGD 224 >RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Short=PR; AltName: Full=p14; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=p80; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=p46 [Moloney murine leukemia virus isolate Shinnick] Sequence ID: P03355.5 Length: 1738 Range 1: 709 to 908 Score:85.1 bits(209), Expect:1e-15, Method:Compositional matrix adjust., Identities:59/206(29%), Positives:105/206(50%), Gaps:15/206(7%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 + LK T + Q+P+++E G+ I +L+++G L W NTP+ +KK + Sbjct 709 IPLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPW--NTPLLPVKKPGTN 766 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHP----GGLQKKKH-VTILDIGDAYFTIPLYEPY 118 +R + D RE+NK+ ED+ +P+P GL T+LD+ DA+F + L+ Sbjct 767 DYRPVQDLREVNKRVEDIHPT---VPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTS 823 Query 119 REYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYM 178 + F P +G + W LPQG+K SP+++ + L D+ QHP++ Y+ Sbjct 824 QPLFAFEWRDPE-MGISGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYV 882 Query 179 DDIYIGSDLEI---KKHREIVKDLAN 201 DD+ + + E+ + R +++ L N Sbjct 883 DDLLLAATSELDCQQGTRALLQTLGN 908 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [AKR (endogenous) murine leukemia virus] Sequence ID: P03356.3 Length: 1734 Range 1: 708 to 892 Score:84.7 bits(208), Expect:2e-15, Method:Compositional matrix adjust., Identities:56/191(29%), Positives:98/191(51%), Gaps:12/191(6%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 + LK T + Q+P+++E G+ I +L+++G L W NTP+ +KK + Sbjct 708 IPLKATSTPVSIKQYPMSQEAKLGIKPHIQRLLDQGILVPCQSPW--NTPLLPVKKPGTN 765 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGL-----QKKKHVTILDIGDAYFTIPLYEPY 118 +R + D RE+NK+ ED+ +P+P L + T+LD+ DA+F + L+ Sbjct 766 DYRPVQDLREVNKRVEDIHPT---VPNPYNLLSGLPPSHRWYTVLDLKDAFFCLRLHPTS 822 Query 119 REYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYM 178 + F P +G + W LPQG+K SP+++ + L D+ QHP++ Y+ Sbjct 823 QPLFAFEWRDPG-MGISGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYV 881 Query 179 DDIYIGSDLEI 189 DDI + + E+ Sbjct 882 DDILLAATSEL 892 >RecName: Full=Pro-Pol polyprotein; AltName: Full=Pr125Pol; Contains: RecName: Full=Protease/Reverse transcriptase/ribonuclease H; AltName: Full=p87Pro-RT-RNaseH; Contains: RecName: Full=Protease/Reverse transcriptase; AltName: Full=p65Pro-RT; Contains: RecName: Full=Ribonuclease H; Short=RNase H; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=p42In [Feline foamy virus] Sequence ID: O93209.1 Length: 1156 Range 1: 178 to 401 Score:84.3 bits(207), Expect:2e-15, Method:Compositional matrix adjust., Identities:71/242(29%), Positives:126/242(52%), Gaps:24/242(9%) Query 32 IIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRELNKQTEDLT-EAQLGLPH 90 +I+ L+++G L + T NTP++ + K +G+WRM++D+R +NK T + + Q Sbjct 178 VINDLLKQGVLIQK--ESTMNTPVYPVPKPNGRWRMVLDYRAVNKVTPLIAVQNQHSYGI 235 Query 91 PGGLQKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPCKRYYWKVLPQGWKLS 150 G L K ++ T +D+ + ++ P+ T FT K+Y W VLPQG+ S Sbjct 236 LGSLFKGRYKTTIDLSNGFWAHPIVPEDYWITAFTWQG-------KQYCWTVLPQGFLNS 288 Query 151 PSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHREIVKDLANYIAQYGFTL 210 P ++ + ++L Q P ++ +Y+DD+YI D E K+H E + L N + + G+ + Sbjct 289 PGLFTGDVVDLL----QGIPNVE--VYVDDVYISHDSE-KEHLEYLDILFNRLKEAGYII 341 Query 211 PEEKRQKGYP-AKWLGFELHPQ----TWKFQKHTLPELTKGTITLNKLQKLVGELVWRQS 265 +K +LGF++ + T F K L +T T TL +LQ ++G L + ++ Sbjct 342 SLKKSNIANSIVDFLGFQITNEGRGLTDTF-KEKLENITAPT-TLKQLQSILGLLNFARN 399 Query 266 II 267 I Sbjct 400 FI 401 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Friend murine leukemia virus (ISOLATE 57)] Sequence ID: P26810.2 Length: 1739 Range 1: 710 to 933 Score:84.7 bits(208), Expect:2e-15, Method:Compositional matrix adjust., Identities:64/231(28%), Positives:114/231(49%), Gaps:14/231(6%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 + LK T + Q+P+++E G+ I +L+++G L W NTP+ +KK + Sbjct 710 ISLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPW--NTPLLPVKKPGTN 767 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHP----GGLQKKKH-VTILDIGDAYFTIPLYEPY 118 +R + D RE+NK+ ED+ +P+P GL T+LD+ DA+F + L+ Sbjct 768 DYRPVQDLREVNKRVEDIHPT---VPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTS 824 Query 119 REYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYM 178 + F P +G + W LPQG+K SP+++ + L D+ QHP++ Y+ Sbjct 825 QSLFAFEWKDPE-MGISGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYV 883 Query 179 DDIYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYP-AKWLGFEL 228 DD+ + + E+ ++ + L + G+ +K Q K+LG+ L Sbjct 884 DDLLLAATSEL-DCQQGTRALLQTLGDLGYRASAKKAQICQKQVKYLGYLL 933 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Friend murine leukemia virus (ISOLATE FB29)] Sequence ID: P26809.2 Length: 1738 Range 1: 709 to 932 Score:84.7 bits(208), Expect:2e-15, Method:Compositional matrix adjust., Identities:64/231(28%), Positives:114/231(49%), Gaps:14/231(6%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 + LK T + Q+P+++E G+ I +L+++G L W NTP+ +KK + Sbjct 709 IPLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPW--NTPLLPVKKPGTN 766 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHP----GGLQKKKH-VTILDIGDAYFTIPLYEPY 118 +R + D RE+NK+ ED+ +P+P GL T+LD+ DA+F + L+ Sbjct 767 DYRPVQDLREVNKRVEDIHPT---VPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTS 823 Query 119 REYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYM 178 + F P +G + W LPQG+K SP+++ + L D+ QHP++ Y+ Sbjct 824 QSLFAFEWRDPE-MGISGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYV 882 Query 179 DDIYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYP-AKWLGFEL 228 DD+ + + E+ ++ + L + G+ +K Q K+LG+ L Sbjct 883 DDLLLAATSEL-DCQQGTRALLQTLGDLGYRASAKKAQICQKQVKYLGYLL 932 >RecName: Full=Gag-pol polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Murine leukemia virus (strain BM5 ECO)] Sequence ID: Q7SVK7.2 Length: 1734 Range 1: 708 to 918 Score:84.3 bits(207), Expect:2e-15, Method:Compositional matrix adjust., Identities:61/218(28%), Positives:107/218(49%), Gaps:13/218(5%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 + LK T + Q+P++ E G+ I +L+++G L W NTP+ +KK + Sbjct 708 IPLKATSTPVSIQQYPMSHEARLGIKPHIQRLLDQGILVPCQSPW--NTPLLPVKKPGTN 765 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHP----GGLQKKKH-VTILDIGDAYFTIPLYEPY 118 +R + D RE+NK+ ED+ +P+P GL T+LD+ DA+F + L+ Sbjct 766 DYRPVQDLREVNKRVEDIHPT---VPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTS 822 Query 119 REYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYM 178 + F P +G + W LPQG+K SP+++ + L D+ QHP++ Y+ Sbjct 823 QPLFAFEWRDPG-MGISGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYV 881 Query 179 DDIYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQ 216 DDI + + E+ ++ + L + G+ +K Q Sbjct 882 DDILLAATSEL-DCQQGTRALLQTLGDLGYRASAKKAQ 918 >RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10; Short=NC-pol; Contains: RecName: Full=Protease p14; Short=PR; Contains: RecName: Full=Reverse transcriptase/ribonuclease H p80; Short=RT; Contains: RecName: Full=Integrase p46; Short=IN [Xenotropic MuLV-related virus VP62] Sequence ID: A1Z651.1 Length: 1733 Range 1: 707 to 917 Score:84.0 bits(206), Expect:3e-15, Method:Compositional matrix adjust., Identities:61/218(28%), Positives:106/218(48%), Gaps:13/218(5%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 + LK T + Q+P+++E G+ I +L+++G L W NTP+ +KK + Sbjct 707 IPLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPW--NTPLLPVKKPGTN 764 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHP----GGLQKKKH-VTILDIGDAYFTIPLYEPY 118 +R + D RE+NK+ ED+ +P+P GL T+LD+ DA+F + L+ Sbjct 765 DYRPVQDLREVNKRVEDIHPT---VPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTS 821 Query 119 REYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYM 178 + F P +G + W LPQG+K SP+++ + L D+ QHP++ Y+ Sbjct 822 QPLFAFEWRDPE-MGISGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYV 880 Query 179 DDIYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQ 216 DD+ + + E R + L + G+ +K Q Sbjct 881 DDLLLAATSEQDCQRG-TRALLQTLGNLGYRASAKKAQ 917 >RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10; Short=NC-pol; Contains: RecName: Full=Protease p14; Short=PR; Contains: RecName: Full=Reverse transcriptase/ribonuclease H p80; Short=RT; Contains: RecName: Full=Integrase p46; Short=IN [Xenotropic MuLV-related virus VP35] Sequence ID: Q2F7J3.1 Length: 1733 Range 1: 707 to 917 Score:84.0 bits(206), Expect:3e-15, Method:Compositional matrix adjust., Identities:61/218(28%), Positives:106/218(48%), Gaps:13/218(5%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 + LK T + Q+P+++E G+ I +L+++G L W NTP+ +KK + Sbjct 707 IPLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPW--NTPLLPVKKPGTN 764 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHP----GGLQKKKH-VTILDIGDAYFTIPLYEPY 118 +R + D RE+NK+ ED+ +P+P GL T+LD+ DA+F + L+ Sbjct 765 DYRPVQDLREVNKRVEDIHPT---VPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTS 821 Query 119 REYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYM 178 + F P +G + W LPQG+K SP+++ + L D+ QHP++ Y+ Sbjct 822 QPLFAFEWRDPE-MGISGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYV 880 Query 179 DDIYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQ 216 DD+ + + E R + L + G+ +K Q Sbjct 881 DDLLLAATSEQDCQRG-TRALLQTLGNLGYRASAKKAQ 917 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Friend murine leukemia virus (ISOLATE PVC-211)] Sequence ID: P26808.2 Length: 1738 Range 1: 709 to 932 Score:84.0 bits(206), Expect:3e-15, Method:Compositional matrix adjust., Identities:63/231(27%), Positives:113/231(48%), Gaps:14/231(6%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 + L+ T + Q+P++ E G+ I +L+++G L W NTP+ +KK + Sbjct 709 IPLRAASTPVSIKQYPMSREARLGIKPHIQRLLDQGILVPCQSPW--NTPLLPVKKPGTN 766 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHP----GGLQKKKH-VTILDIGDAYFTIPLYEPY 118 +R + D RE+NK+ ED+ +P+P GL T+LD+ DA+F + L+ Sbjct 767 DYRPVQDLREVNKRVEDIHPT---VPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTS 823 Query 119 REYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYM 178 + F P +G + W LPQG+K SP+++ + L D+ QHP++ Y+ Sbjct 824 QSLFAFEWRDPE-MGISGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYV 882 Query 179 DDIYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYP-AKWLGFEL 228 DD+ + + E+ ++ + L + G+ +K Q K+LG+ L Sbjct 883 DDLLLAATSEL-DCQQGTRALLQTLGDLGYRASAKKAQICQKQVKYLGYLL 932 >RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10; Short=NC-pol; Contains: RecName: Full=Protease p14; Short=PR; Contains: RecName: Full=Reverse transcriptase/ribonuclease H p80; Short=RT; Contains: RecName: Full=Integrase p46; Short=IN [Xenotropic MuLV-related virus VP42] Sequence ID: Q2F7J0.1 Length: 1733 Range 1: 707 to 917 Score:84.0 bits(206), Expect:3e-15, Method:Compositional matrix adjust., Identities:61/218(28%), Positives:106/218(48%), Gaps:13/218(5%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 + LK T + Q+P+++E G+ I +L+++G L W NTP+ +KK + Sbjct 707 IPLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPW--NTPLLPVKKPGTN 764 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHP----GGLQKKKH-VTILDIGDAYFTIPLYEPY 118 +R + D RE+NK+ ED+ +P+P GL T+LD+ DA+F + L+ Sbjct 765 DYRPVQDLREVNKRVEDIHPT---VPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTS 821 Query 119 REYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYM 178 + F P +G + W LPQG+K SP+++ + L D+ QHP++ Y+ Sbjct 822 QPLFAFEWRDPE-MGISGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYV 880 Query 179 DDIYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQ 216 DD+ + + E R + L + G+ +K Q Sbjct 881 DDLLLAATSEQDCQRG-TRALLQTLGNLGYRASAKKAQ 917 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Baboon endogenous virus strain M7] Sequence ID: P10272.2 Length: 1727 Range 1: 706 to 916 Score:83.2 bits(204), Expect:4e-15, Method:Compositional matrix adjust., Identities:62/218(28%), Positives:104/218(47%), Gaps:13/218(5%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGK 64 + LK + Q+P++ E G+ + I K +E G L W NTP+ +KK + Sbjct 706 IDLKPTAVPVSIKQYPMSLEAHMGIRQHIIKFLELGVLRPCRSPW--NTPLLPVKKPGTQ 763 Query 65 -WRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKH-----VTILDIGDAYFTIPLYEPY 118 +R + D RE+NK+T D+ +P+P L T+LD+ DA+F +PL Sbjct 764 DYRPVQDLREINKRTVDIHPT---VPNPYNLLSTLKPDYSWYTVLDLKDAFFCLPLAPQS 820 Query 119 REYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYM 178 +E F P G + W LPQG+K SP+++ + L D+ QHPE+ Y+ Sbjct 821 QELFAFEWKDPER-GISGQLTWTRLPQGFKNSPTLFDEALHRDLTDFRTQHPEVTLLQYV 879 Query 179 DDIYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQ 216 DD+ + + + K + + L + + G+ +K Q Sbjct 880 DDLLLAAPTK-KACTQGTRHLLQELGEKGYRASAKKAQ 916 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Clostridium kluyveri DSM 555] Sequence ID: A5N7A5.1 Length: 143 Range 1: 11 to 141 Score:75.9 bits(185), Expect:5e-15, Method:Compositional matrix adjust., Identities:49/131(37%), Positives:73/131(55%), Gaps:5/131(3%) Query 550 EGILP--KREEDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMA-AKG 606 E ILP E DAG DL EEV I+P + K I +++ L + + +S +A A G Sbjct 11 EAILPFYAHEGDAGLDLFSVEEVLIKPMERKLIATGIKIQLPPNTEGQVRPRSGLALAHG 70 Query 607 V--FTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKT 664 + G ID GY+G+I+V+M N + +I +G K AQ+++ + ++ E + T Sbjct 71 ITLLNSPGTIDEGYRGEIKVLMINLGQEGFLIKKGMKIAQMVIKPIEQVLIKEVVELKDT 130 Query 665 ERGEKGFGSTG 675 ERGE GFGSTG Sbjct 131 ERGEGGFGSTG 141 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Clostridium novyi NT] Sequence ID: A0Q1N5.1 Length: 142 Range 1: 20 to 142 Score:75.9 bits(185), Expect:6e-15, Method:Compositional matrix adjust., Identities:46/123(37%), Positives:67/123(54%), Gaps:3/123(2%) Query 557 EEDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAK---GVFTQGGI 613 E DAG DL EE+T++P + K I +++ L K A I +S +A K V G Sbjct 20 EGDAGMDLFSVEEITLKPMERKLIHTGIKIQLPKDTEAQIRPRSGLALKHGITVLNTPGT 79 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 ID GY+G+I +I+ N + +G K AQ+++ K+E E +T RGE GFGS Sbjct 80 IDEGYRGEIGIILINLGSEEFKVEEGMKIAQMVIKPTLTLKVEEVVELTETTRGENGFGS 139 Query 674 TGM 676 TG+ Sbjct 140 TGV 142 >RecName: Full=Intracisternal A-particle Pol-related polyprotein; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Mouse intracisternal A-particle MIAIL3] Sequence ID: P12894.1 Length: 814 Range 1: 66 to 484 Score:81.6 bits(200), Expect:1e-14, Method:Compositional matrix adjust., Identities:102/436(23%), Positives:181/436(41%), Gaps:55/436(12%) Query 134 PCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHR 193 P KRY WKVLPQG SP++ Q +Q+ L +Q P + +YMDDI + ++ + Sbjct 66 PDKRYQWKVLPQGMSNSPTMCQLYVQKALLPVREQFPSLILLLYMDDILLCHK-DLTMLQ 124 Query 194 EIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPELTKGTI-TLNK 252 + L ++Q+G + EK Q ++LG + P QK E+ + + TLN Sbjct 125 KAYPFLLKTLSQWGLQIATEKVQISDTGQFLGSVVSPDKIVPQKV---EIRRDHLHTLND 181 Query 253 LQKLVGELVWRQSIIGKSIPN-----ILKLMEGDRELQSERKIEEVHVKEWEACRKKLEE 307 QKL+G++ W + + IP+ + ++EGD + S R + + + K L+ Sbjct 182 FQKLLGDINWLRPFL--KIPSAELRPLFSILEGDPHISSPRTLTLAANQALQKVEKALQN 239 Query 308 MEGNYYNKDKDVYGQLAWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSI----PQQVIKAA 363 + +D + + + V + G LW++ N+ I P + + A Sbjct 240 AQLQRI-EDSQPFSLCVFKTAQLPTAVLWQNGPLLWIH--PNVSPAKIIDWYPDAIAQLA 296 Query 364 QKLTQEVIIRTGKIPWIL-----------LPGKEEDWRLELQLGNITWMPKFWSCYRGH- 411 K + I G+ P++L L DW + + ++ K + Y H Sbjct 297 LKGLKAAITHFGQSPYLLIVPYTAAQVQTLAAASNDWAVLV----TSFSGKIDNHYPKHP 352 Query 412 ---------TRWRKRNIIEEVVEGPTYYTDGGKKNKVGSLGFIVSTGEKFRK-HEEGTNQ 461 + + + + G YTDG K +G V+ G+ K + E + Q Sbjct 353 ILQFAQNQSVVFPQITVRNPLKNGIVVYTDGSKT----GIGAYVANGKVVSKQYNENSPQ 408 Query 462 QLELRAIEEALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIK------NPIQARIMEIAHK 515 +E + E LK + +N+V+DS Y + VIK N Q + + + Sbjct 409 VVECLVVLEVLKTFLKPLNIVSDSYYVVNAVNLLEVAGVIKPSSRVANIFQQIQLVLLSR 468 Query 516 KDRIGVHWVPGHKGIP 531 + + + V H G+P Sbjct 469 RSPVYITHVRAHSGLP 484 >RecName: Full=Pro-Pol polyprotein; AltName: Full=Pr125Pol; Contains: RecName: Full=Protease/Reverse transcriptase/ribonuclease H; AltName: Full=p87Pro-RT-RNaseH; Contains: RecName: Full=Protease/Reverse transcriptase; AltName: Full=p65Pro-RT; Contains: RecName: Full=Ribonuclease H; Short=RNase H; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=p42In [Macaque simian foamy virus] Sequence ID: P23074.3 Length: 1149 Range 1: 149 to 363 Score:80.9 bits(198), Expect:2e-14, Method:Compositional matrix adjust., Identities:68/234(29%), Positives:120/234(51%), Gaps:28/234(11%) Query 4 KVKLKEGCTGPHVP----QWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIK 59 ++K TG P Q+P+ + + +ID L+++G L + + T NTP++ + Sbjct 149 RIKPHNIATGTLAPRPQKQYPINPKAKPSIQIVIDDLLKQGVLIQQ--NSTMNTPVYPVP 206 Query 60 KKSGKWRMLIDFRELNKQTEDLTEAQLGLPHPGG----LQKKKHVTILDIGDAYFTIPLY 115 K GKWRM++D+RE+NK T L AQ H G + + K+ T LD+ + ++ P+ Sbjct 207 KPDGKWRMVLDYREVNK-TIPLIAAQNQ--HSAGILSSIYRGKYKTTLDLTNGFWAHPIT 263 Query 116 EPYREYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFG 175 T FT K+Y W LPQG+ SP++ FT + D +++ P +Q Sbjct 264 PESYWLTAFTWQG-------KQYCWTRLPQGFLNSPAL--FTADVV--DLLKEIPNVQ-- 310 Query 176 IYMDDIYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKG-YPAKWLGFEL 228 Y+DDIYI D + ++H E ++ + + + G+ + +K + ++LGF + Sbjct 311 AYVDDIYISHD-DPQEHLEQLEKIFSILLNAGYVVSLKKSEIAQREVEFLGFNI 363 >RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Cas-Br-E murine leukemia virus] Sequence ID: P08361.2 Length: 1733 Range 1: 707 to 930 Score:81.3 bits(199), Expect:2e-14, Method:Compositional matrix adjust., Identities:63/231(27%), Positives:113/231(48%), Gaps:14/231(6%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 + LK T + Q+P+++E G+ I +L+++G L W NTP+ +KK + Sbjct 707 IPLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPW--NTPLLPVKKPGTN 764 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHP----GGLQKKKH-VTILDIGDAYFTIPLYEPY 118 +R + D RE+NK+ ED+ +P+P GL T+LD+ DA+F + L+ Sbjct 765 DYRPVQDLREVNKRVEDIHPT---VPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTS 821 Query 119 REYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYM 178 + F P +G + W LPQG+K SP+++ + L + QHP++ Y+ Sbjct 822 QPLFAFEWRDPE-MGISGQLTWTRLPQGFKNSPTLFDEALHRDLAGFRIQHPDLILLQYV 880 Query 179 DDIYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYP-AKWLGFEL 228 DD+ + + E+ ++ + L + G+ +K Q K+LG+ L Sbjct 881 DDLLLAATSEL-DCQQGTRALLQTLGDLGYRASAKKAQICQKQVKYLGYLL 930 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Cutibacterium acnes KPA171202] Sequence ID: Q6A8W1.1 Length: 152 Range 1: 23 to 144 Score:74.3 bits(181), Expect:2e-14, Method:Composition-based stats., Identities:41/122(34%), Positives:67/122(54%), Gaps:4/122(3%) Query 559 DAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAK---GVFTQGGIID 615 DAG DL C +V + PG+ + +R+ L + +S +AA+ + G ID Sbjct 23 DAGADLTCRHDVDLAPGERAMVETGVRVALPDGYVGFVNPRSGLAARHGLSIVNAPGTID 82 Query 616 SGYQGQIQVIMYNSN-KIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGST 674 SGY+GQI V++ N++ + V + G + AQL+++ EP + TERG+ G+GST Sbjct 83 SGYRGQINVLLVNTDPREPVHLDAGSRIAQLVVVPVVEAIFEPVEDLDDTERGQGGYGST 142 Query 675 GM 676 G+ Sbjct 143 GV 144 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Acaryochloris marina MBIC11017] Sequence ID: B0C9N7.1 Length: 143 Range 1: 21 to 141 Score:73.9 bits(180), Expect:3e-14, Method:Composition-based stats., Identities:43/121(36%), Positives:63/121(52%), Gaps:3/121(2%) Query 558 EDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAK---GVFTQGGII 614 +DAG DL E I PG IP + + L + A + +S +A K V G I Sbjct 21 DDAGLDLFAIEAQKILPGASALIPTGIAIELPQGTEAQVRPRSGLALKHSITVLNSPGTI 80 Query 615 DSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGST 674 D+GY+G+I VI+ N + + +G K AQ+++ ++E E T+RGE GFGST Sbjct 81 DAGYRGEIGVILINHGQETFQVVEGMKIAQMVIAPIMRAEIEEVTELSATQRGEGGFGST 140 Query 675 G 675 G Sbjct 141 G 141 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Radiation murine leukemia virus] Sequence ID: P11227.2 Length: 1734 Range 1: 708 to 907 Score:79.7 bits(195), Expect:5e-14, Method:Compositional matrix adjust., Identities:57/206(28%), Positives:103/206(50%), Gaps:15/206(7%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 + LK T + Q+P+++E G+ I +L+++G L W NTP+ +KK + Sbjct 708 IPLKATSTPVSIKQYPMSQEAKLGIKPHIQRLLDQGILVPCQSPW--NTPLLPVKKPGTN 765 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGL-----QKKKHVTILDIGDAYFTIPLYEPY 118 +R + RE+NK+ ED+ +P+P L + T+LD+ DA+F + L+ Sbjct 766 DYRPVQGLREVNKRVEDIHPT---VPNPYNLLSGLPTSHRWYTVLDLKDAFFCLRLHPTS 822 Query 119 REYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYM 178 + P +G + W LPQG+K SP+++ + L D+ QHP++ Y+ Sbjct 823 QPLFASEWRDPG-MGISGQLTWTRLPQGFKNSPTLFDEALHRGLADFRIQHPDLILLQYV 881 Query 179 DDIYIGSDLEI---KKHREIVKDLAN 201 DD+ + + E+ + R ++K L N Sbjct 882 DDLLLAATSELDCQQGTRALLKTLGN 907 >RecName: Full=Pro-Pol polyprotein; AltName: Full=Pr125Pol; Contains: RecName: Full=Protease/Reverse transcriptase/ribonuclease H; AltName: Full=p87Pro-RT-RNaseH; Contains: RecName: Full=Protease/Reverse transcriptase; AltName: Full=p65Pro-RT; Contains: RecName: Full=Ribonuclease H; Short=RNase H; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=p42In [Simian foamy virus (TYPE 3 / STRAIN LK3)] Sequence ID: P27401.2 Length: 1143 Range 1: 167 to 363 Score:79.7 bits(195), Expect:5e-14, Method:Compositional matrix adjust., Identities:61/216(28%), Positives:115/216(53%), Gaps:24/216(11%) Query 18 QWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRELNKQ 77 Q+P+ + + +I+ L+++G L + + NTP++ + K GKWRM++D+RE+NK Sbjct 167 QYPINPKAKASIQTVINDLLKQGVLIQQ--NSIMNTPVYPVPKPDGKWRMVLDYREVNK- 223 Query 78 TEDLTEAQLGLPHPGGLQ----KKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLG 133 T L AQ H G+ + K+ T LD+ + ++ + T FT L Sbjct 224 TIPLIAAQNQ--HSAGILSSIFRGKYKTTLDLSNGFWAHSITPESYWLTAFTWLG----- 276 Query 134 PCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHR 193 ++Y W LPQG+ SP++ FT + D +++ P +Q +Y+DDIYI D + ++H Sbjct 277 --QQYCWTRLPQGFLNSPAL--FTADVV--DLLKEVPNVQ--VYVDDIYISHD-DPREHL 327 Query 194 EIVKDLANYIAQYGFTLPEEKRQKG-YPAKWLGFEL 228 E ++ + + + G+ + +K + + ++LGF + Sbjct 328 EQLEKVFSLLLNAGYVVSLKKSEIAQHEVEFLGFNI 363 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Short=PR; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=p80; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=p46 [Woolly monkey sarcoma virus] Sequence ID: P03359.2 Length: 1687 Range 1: 685 to 899 Score:77.4 bits(189), Expect:3e-13, Method:Compositional matrix adjust., Identities:56/222(25%), Positives:109/222(49%), Gaps:13/222(5%) Query 1 PITKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKK 60 P V+L+ G + V Q+P+++E +G+ I + ++ G L W NTP+ +KK Sbjct 685 PPVVVELRSGASPVAVRQYPMSKEAREGIRPHIQRFLDLGVLVPCQSPW--NTPLLPVKK 742 Query 61 K-SGKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKK---KHV--TILDIGDAYFTIPL 114 + +R + D RE+NK+ +D+ +P+P L H ++LD+ DA+F + L Sbjct 743 PGTNDYRPVQDLREINKRVQDIHPT---VPNPYNLLSSLPPSHTWYSVLDLKDAFFCLKL 799 Query 115 YEPYREYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQF 174 + + F P G + W LPQG+K SP+++ + L + +P++ Sbjct 800 HPNSQPLFAFEWRDPEK-GNTGQLTWTRLPQGFKNSPTLFDEALHRDLAPFRALNPQVVL 858 Query 175 GIYMDDIYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQ 216 Y+DD+ + + + +E + L +++ G+ + +K Q Sbjct 859 LQYVDDLLVAAP-TYRDCKEGTQKLLQELSKLGYRVSAKKAQ 899 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Leifsonia xyli subsp. xyli str. CTCB07] Sequence ID: Q6AFE0.1 Length: 152 Range 1: 22 to 142 Score:70.5 bits(171), Expect:6e-13, Method:Composition-based stats., Identities:40/121(33%), Positives:64/121(52%), Gaps:4/121(3%) Query 559 DAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAK---GVFTQGGIID 615 DAG DL E VT+EPG+ +P + + L + A + +S +A K + G +D Sbjct 22 DAGADLCAAEAVTLEPGERHTVPTGVSIALPEGYAAFVVPRSGLAMKHGLTIVNAPGTVD 81 Query 616 SGYQGQIQVIMYNSNK-IAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGST 674 +GY+G+I+V + N+++ + I G + AQLI+M P + RG GFGS+ Sbjct 82 AGYRGEIRVTVLNTDRSMPYDIAVGDRIAQLIVMPVTRAVFVPVDTLPDSHRGTAGFGSS 141 Query 675 G 675 G Sbjct 142 G 142 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Feline leukemia virus] Sequence ID: P10273.2 Length: 1712 Range 1: 676 to 856 Score:76.3 bits(186), Expect:6e-13, Method:Compositional matrix adjust., Identities:52/187(28%), Positives:95/187(50%), Gaps:12/187(6%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGK 64 ++LK T + Q+P+ E +G+ I +++++G L W NTP+ +KK + Sbjct 676 IQLKATATPISIRQYPMPHEAYQGIKPHIRRMLDQGILKPCQSPW--NTPLLPVKKPGTE 733 Query 65 -WRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKK---KH--VTILDIGDAYFTIPLYEPY 118 +R + D RE+NK+ ED+ +P+P L H T+LD+ DA+F + L+ Sbjct 734 DYRPVQDLREVNKRVEDIHPT---VPNPYNLLSTLPPSHPWYTVLDLKDAFFCLRLHSES 790 Query 119 REYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYM 178 + F P +G + W LPQG+K SP+++ + L D+ ++P + Y+ Sbjct 791 QLLFAFEWRDPE-IGLSGQLTWTRLPQGFKNSPTLFDEALHSDLADFRVRYPALVLLQYV 849 Query 179 DDIYIGS 185 DD+ + + Sbjct 850 DDLLLAA 856 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Fowl aviadenovirus 8] Sequence ID: Q9YYS0.1 Length: 163 Range 1: 24 to 153 Score:70.5 bits(171), Expect:7e-13, Method:Composition-based stats., Identities:43/130(33%), Positives:64/130(49%), Gaps:3/130(2%) Query 551 GILPKREED--AGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAKGVF 608 + P+R AGYDL +V + P IP +L + + IA +S +A K Sbjct 24 AVTPQRATSGAAGYDLCSSADVVVPPKSRSLIPTDLSFQFPRGVYGRIAPRSGLAVKFFI 83 Query 609 TQG-GIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERG 667 G G+IDS Y+G + V+++N + + +G + AQLIL LE +T RG Sbjct 84 DVGAGVIDSDYRGIVSVLLFNFSDHNFNVRRGDRIAQLILERHLTPDLEERSGLDETARG 143 Query 668 EKGFGSTGMY 677 GFGSTG + Sbjct 144 AAGFGSTGGF 153 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr125Pol; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease/Reverse transcriptase/ribonuclease H; AltName: Full=p87; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=p42 [Koala retrovirus] Sequence ID: Q9TTC1.2 Length: 1687 Range 1: 685 to 899 Score:75.9 bits(185), Expect:9e-13, Method:Compositional matrix adjust., Identities:56/222(25%), Positives:108/222(48%), Gaps:13/222(5%) Query 1 PITKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKK 60 P V+LK + V Q+P+++E +G+ I + ++ G L W NTP+ +KK Sbjct 685 PPVVVELKSDASPVAVRQYPMSKEAREGIRPHIQRFLDLGILVPCQSPW--NTPLLPVKK 742 Query 61 K-SGKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKK---KHV--TILDIGDAYFTIPL 114 + +R + D RE+NK+ +D+ +P+P L H ++LD+ DA+F + L Sbjct 743 PGTNDYRPVQDLREVNKRVQDIHPT---VPNPYNLLSSLPPSHTWYSVLDLKDAFFCLKL 799 Query 115 YEPYREYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQF 174 + + F P G + W LPQG+K SP+++ + L + +P++ Sbjct 800 HPNSQPLFAFEWRDPEK-GNTGQLTWTRLPQGFKNSPTLFDEALHRDLASFRALNPQVVM 858 Query 175 GIYMDDIYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQ 216 Y+DD+ + + + +E + L +++ G+ + +K Q Sbjct 859 LQYVDDLLVAAP-TYRDCKEGTRRLLQELSKLGYRVSAKKAQ 899 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Gloeobacter violaceus PCC 7421] Sequence ID: Q7NKL2.2 Length: 147 Range 1: 25 to 146 Score:69.3 bits(168), Expect:1e-12, Method:Composition-based stats., Identities:39/122(32%), Positives:63/122(51%), Gaps:5/122(4%) Query 559 DAGYDLICPEEV--TIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAK---GVFTQGGI 613 DAG DL V +I PG+ +P + L L A + +S +AA+ V G+ Sbjct 25 DAGLDLFAAHAVPLSIAPGRFTRVPTGIALGLPAGYMAFVQPRSGLAARHGISVLNTPGL 84 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 ID GY+G+IQV++ N ++ VV+ +G + AQL+++ + +ER FGS Sbjct 85 IDCGYRGEIQVLLINHGEVPVVVSRGDRIAQLVVLPVPQVQFVEVSTLESSERQTGSFGS 144 Query 674 TG 675 +G Sbjct 145 SG 146 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Candida albicans WO-1] Sequence ID: C4YFC7.1 Length: 159 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Candida albicans SC5314] Sequence ID: P0CY19.1 Length: 159 Range 1: 39 to 157 Score:68.9 bits(167), Expect:2e-12, Method:Composition-based stats., Identities:43/122(35%), Positives:67/122(54%), Gaps:9/122(7%) Query 560 AGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAK-GVFTQGGIIDSGY 618 AGYDL E TI + ++ + + + +A +S +A K G+ T G+ID+ Y Sbjct 39 AGYDLYSAEAATIPAHGQGLVSTDISIIVPIGTYGRVAPRSGLAVKHGISTGAGVIDADY 98 Query 619 QGQIQVIMYNSNKIAVVIPQGRKFAQLIL-----MDKKHGKLEPWGESRKTERGEKGFGS 673 +G+++V+++N ++ I +G + AQL+L D K LE E TERGE GFGS Sbjct 99 RGEVKVVLFNHSEKDFEIKEGDRIAQLVLEQIVNADIKEISLE---ELDNTERGEGGFGS 155 Query 674 TG 675 TG Sbjct 156 TG 157 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Clostridioides difficile] Sequence ID: O30931.1 Length: 143 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Clostridioides difficile 630] Sequence ID: Q181Y7.1 Length: 143 Range 1: 12 to 143 Score:68.2 bits(165), Expect:2e-12, Method:Compositional matrix adjust., Identities:45/132(34%), Positives:67/132(50%), Gaps:5/132(3%) Query 550 EGILPK--REEDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAK-- 605 + I+P + DAG DL EEV I PG+ K I + + L A + +S +A K Sbjct 12 DAIIPNFAHKGDAGMDLYSIEEVVIPPGETKLIKTGICIELPTMTEAQVRPRSGLALKHS 71 Query 606 -GVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKT 664 V G ID GY+G++++I+ N K + + K AQ+I+ +E E + Sbjct 72 VTVLNTPGTIDEGYRGELKIILINHGKNDFKVEKHMKIAQMIVKPIYDINIEEVKELSDS 131 Query 665 ERGEKGFGSTGM 676 ERG+ GFGSTG Sbjct 132 ERGKGGFGSTGF 143 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Candidatus Solibacter usitatus Ellin6076] Sequence ID: Q02BZ2.1 Length: 147 Range 1: 15 to 146 Score:68.6 bits(166), Expect:2e-12, Method:Composition-based stats., Identities:47/135(35%), Positives:70/135(51%), Gaps:12/135(8%) Query 550 EGILPKRE----EDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAK 605 + ILP EDAG DL E+VT+EPG + + L L + A + +S +A K Sbjct 15 QAILPTYAHGPAEDAGMDLHAVEDVTLEPGVARLVSTGLTLEVPPGFEAQVRPRSGLALK 74 Query 606 GVFT---QGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPW--GE 660 T G ID GY+G+++VIM N + A + G + AQ+I+ ++ +E W G Sbjct 75 HAITIPNAPGTIDPGYRGEVRVIMLNLGRDAYTVHAGDRIAQMIV--TRYEAVE-WLEGS 131 Query 661 SRKTERGEKGFGSTG 675 + RG GFGS+G Sbjct 132 LADSTRGAGGFGSSG 146 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Gibbon ape leukemia virus] Sequence ID: P21414.2 Length: 1686 Range 1: 684 to 868 Score:73.9 bits(180), Expect:3e-12, Method:Compositional matrix adjust., Identities:51/191(27%), Positives:94/191(49%), Gaps:12/191(6%) Query 1 PITKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKK 60 P V+L+ G + V Q+P+++E +G+ I K ++ G L W NTP+ +KK Sbjct 684 PPVVVELRSGASPVAVRQYPMSKEAREGIRPHIQKFLDLGVLVPCRSPW--NTPLLPVKK 741 Query 61 K-SGKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKH-----VTILDIGDAYFTIPL 114 + +R + D RE+NK+ +D+ +P+P L ++LD+ DA+F + L Sbjct 742 PGTNDYRPVQDLREINKRVQDIHPT---VPNPYNLLSSLPPSYTWYSVLDLKDAFFCLRL 798 Query 115 YEPYREYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQF 174 + + F P G + W LPQG+K SP+++ + L + +P++ Sbjct 799 HPNSQPLFAFEWKDPEK-GNTGQLTWTRLPQGFKNSPTLFDEALHRDLAPFRALNPQVVL 857 Query 175 GIYMDDIYIGS 185 Y+DD+ + + Sbjct 858 LQYVDDLLVAA 868 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Trichodesmium erythraeum IMS101] Sequence ID: Q113K0.1 Length: 142 Range 1: 22 to 141 Score:66.6 bits(161), Expect:9e-12, Method:Compositional matrix adjust., Identities:41/120(34%), Positives:60/120(50%), Gaps:3/120(2%) Query 559 DAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAK---GVFTQGGIID 615 DAG DL +E TI PG+ K I + + L A I +S +A K V G ID Sbjct 22 DAGLDLFSIDESTINPGESKLIHTGISIELPSGTEAQIRPRSGLALKHQITVLNTPGTID 81 Query 616 SGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGSTG 675 Y+G+I +I+ N K + + + K AQ+++ K+E + T+R GFGSTG Sbjct 82 ETYRGEIGIILINHGKNSFQVTKRMKIAQMVITSVLSVKVEEVNQLSTTQRDINGFGSTG 141 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Fowl aviadenovirus 1] Sequence ID: Q89662.1 Length: 178 Range 1: 42 to 159 Score:67.4 bits(163), Expect:1e-11, Method:Composition-based stats., Identities:39/118(33%), Positives:62/118(52%), Gaps:1/118(0%) Query 560 AGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAKGVFTQG-GIIDSGY 618 AGYDL ++ + +P +L + IA +S +AAK G G+ID Y Sbjct 42 AGYDLFSAYDIKVPARGRALVPTDLVFQFPPGCYGRIAPRSGLAAKFFIDVGAGVIDPDY 101 Query 619 QGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGSTGM 676 +G + V+++N ++ + I +G + AQLIL +L + +T+RG GFGSTGM Sbjct 102 RGNVSVVLFNFSESSFNIRRGDRVAQLILERIMVPELSELTQLGETDRGASGFGSTGM 159 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Debaryomyces hansenii CBS767] Sequence ID: Q6BRN7.1 Length: 160 Range 1: 22 to 158 Score:66.6 bits(161), Expect:1e-11, Method:Composition-based stats., Identities:46/141(33%), Positives:71/141(50%), Gaps:12/141(8%) Query 543 IFLAKEGEGILPKREE--DAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKS 600 +FL E LP R AGYD+ EE I + ++ + + + +A +S Sbjct 22 VFLRSE-NATLPTRGSVLSAGYDIYASEEAVIPAQGQGLVGTDISVAVPIGTYGRVAPRS 80 Query 601 SMAAK-GVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLIL-----MDKKHGK 654 +A K G+ T G+ID+ Y+G+++V+++N + I +G + AQL+L D K Sbjct 81 GLAVKHGISTGAGVIDADYRGEVKVVLFNHAQKDFTIQKGDRIAQLVLEKIVMADIKQIT 140 Query 655 LEPWGESRKTERGEKGFGSTG 675 E E T RGE GFGSTG Sbjct 141 AE---ELDITARGEGGFGSTG 158 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Burkholderia cenocepacia HI2424] Sequence ID: A0K9T8.1 Length: 148 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Burkholderia orbicola MC0-3] Sequence ID: B1JXC6.1 Length: 148 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Burkholderia orbicola AU 1054] Sequence ID: Q1BU98.1 Length: 148 Range 1: 25 to 148 Score:65.5 bits(158), Expect:2e-11, Method:Composition-based stats., Identities:42/124(34%), Positives:67/124(54%), Gaps:6/124(4%) Query 560 AGYDL-ICPEE-VTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL C + VT++PG+ +P L ++L +A +I +S + K G G+ Sbjct 25 AGLDLRACLDAPVTLQPGETTLVPTGLAIHLADPGYAALILPRSGLGHKHGIVLGNLVGL 84 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQ+ V +N + A V+ + AQL+++ + E +++RGE GFGS Sbjct 85 IDSDYQGQLMVSTWNRGQTAFVLNPFERLAQLVIVPVVQAQFNIVDEFTESDRGEGGFGS 144 Query 674 TGMY 677 TG + Sbjct 145 TGRH 148 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Ralstonia pickettii 12J] Sequence ID: B2UAR0.1 Length: 148 Range 1: 25 to 148 Score:65.1 bits(157), Expect:3e-11, Method:Composition-based stats., Identities:44/124(35%), Positives:65/124(52%), Gaps:6/124(4%) Query 560 AGYDL-ICPEE-VTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL C + +TIEPG IP + ++L +A +I +S M K G G+ Sbjct 25 AGLDLRACVDAPLTIEPGTTHLIPTGMAIHLADPGYAALILPRSGMGHKHGIVLGNLVGL 84 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQ+ V +N A V+ + AQL+++ +L + ++ERG GFGS Sbjct 85 IDSDYQGQLMVSTWNRGSTAFVLNPMERLAQLVIVPVVQAELNIVDDFAESERGAGGFGS 144 Query 674 TGMY 677 TG + Sbjct 145 TGRH 148 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Nautilia profundicola AmH] Sequence ID: B9L823.1 Length: 142 Range 1: 11 to 141 Score:64.3 bits(155), Expect:6e-11, Method:Compositional matrix adjust., Identities:44/131(34%), Positives:68/131(51%), Gaps:5/131(3%) Query 550 EGILP--KREEDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAK-- 605 E ++P + +E AG+DL E+V I+PG+ K I L ++ I +S +A K Sbjct 11 EALIPAYQTKEAAGFDLHSIEDVIIKPGERKLIGTGLAFEIEFGYEVQIRPRSGLAFKHG 70 Query 606 -GVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKT 664 V G IDS Y+G+I+V++ N + A I + + AQ ++ ++ E T Sbjct 71 ITVLNTPGTIDSDYRGEIKVLLINHSNEAFEIKKEERIAQAVIAPVVQAEIIEVEELSDT 130 Query 665 ERGEKGFGSTG 675 ERG GFGSTG Sbjct 131 ERGAGGFGSTG 141 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Burkholderia ambifaria MC40-6] Sequence ID: B1YVA7.1 Length: 148 Range 1: 25 to 148 Score:63.5 bits(153), Expect:1e-10, Method:Composition-based stats., Identities:41/124(33%), Positives:66/124(53%), Gaps:6/124(4%) Query 560 AGYDL-ICPEE-VTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL C + VT++PG+ +P L ++L +A +I +S + K G G+ Sbjct 25 AGLDLRACLDAPVTLQPGETTLVPTGLAIHLADPGYAALILPRSGLGHKHGIVLGNLVGL 84 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQ+ V +N + V+ + AQL+++ + + ++ERGE GFGS Sbjct 85 IDSDYQGQLMVSTWNRGQTEFVLNPFERLAQLVIVPVVQAQFNIVDDFAQSERGEGGFGS 144 Query 674 TGMY 677 TG + Sbjct 145 TGRH 148 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Burkholderia cenocepacia J2315] Sequence ID: B4E900.1 Length: 148 Range 1: 25 to 148 Score:63.5 bits(153), Expect:1e-10, Method:Composition-based stats., Identities:41/124(33%), Positives:66/124(53%), Gaps:6/124(4%) Query 560 AGYDL-ICPEE-VTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL C + VT++PG+ +P L ++L +A +I +S + K G G+ Sbjct 25 AGLDLRACLDAPVTLQPGETTLVPTGLAIHLADPGYAALILPRSGLGHKHGIVLGNLVGL 84 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQ+ V +N + V+ + AQL+++ + E +++RGE GFGS Sbjct 85 IDSDYQGQLMVSTWNRGQTEFVLNPFERLAQLVIVPVVQAQFNIVDEFTESDRGEGGFGS 144 Query 674 TGMY 677 TG + Sbjct 145 TGRH 148 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Pseudomonas fluorescens Pf0-1] Sequence ID: Q3K4M6.1 Length: 151 Range 1: 28 to 149 Score:63.2 bits(152), Expect:1e-10, Method:Composition-based stats., Identities:42/122(34%), Positives:61/122(50%), Gaps:6/122(4%) Query 560 AGYDL--ICPEEVTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL + E++ I+PG+ IP L + + A +I +S M K G G+ Sbjct 28 AGLDLRAMLQEDIVIKPGETVLIPTGLSVYIGDPNLAALILPRSGMGHKHGIVLGNLVGL 87 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQG + V +N + +P G + AQL+L+ E E +TERG GFG Sbjct 88 IDSDYQGPLMVSCWNRGQTEFTMPVGERLAQLVLVPVVQAHFEMVEEFVETERGTGGFGH 147 Query 674 TG 675 +G Sbjct 148 SG 149 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Candidatus Protochlamydia amoebophila UWE25] Sequence ID: Q6MEK7.1 Length: 150 Range 1: 16 to 150 Score:63.2 bits(152), Expect:2e-10, Method:Composition-based stats., Identities:44/135(33%), Positives:64/135(47%), Gaps:7/135(5%) Query 548 EGEGILP--KREEDAGYDL--ICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMA 603 E E +LP E AG D+ E + I PGQ IP +RL + + + +S +A Sbjct 16 ENEELLPFYMTPEAAGADVKAYLKESLEIPPGQSALIPTGMRLAIPEGYEIQVRPRSGLA 75 Query 604 AK---GVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGE 660 K V G ID+ Y+G+I++I+ N A ++ G + AQL+L E Sbjct 76 LKHQVTVLNTPGTIDADYRGEIKIILINHGTNAFIVEPGMRIAQLVLAQVLRANFVLSEE 135 Query 661 SRKTERGEKGFGSTG 675 T+RG GFG TG Sbjct 136 LESTQRGVGGFGHTG 150 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Paraburkholderia phymatum STM815] Sequence ID: B2JDY5.1 Length: 148 Range 1: 25 to 148 Score:63.2 bits(152), Expect:2e-10, Method:Composition-based stats., Identities:42/124(34%), Positives:62/124(50%), Gaps:6/124(4%) Query 560 AGYDL-ICPEE-VTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL C + +T+EPGQ +P L ++L +A +I +S M K G G+ Sbjct 25 AGLDLRACLDAPLTLEPGQTVLVPTGLAIHLADPGYAALILPRSGMGHKHGIVLGNLVGL 84 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQ+ + +N + + AQL+++ E +ERGE GFGS Sbjct 85 IDSDYQGQLMISTWNRGTTTFTLNPMERLAQLVIVPVVQATFNIVDEFDTSERGEGGFGS 144 Query 674 TGMY 677 TG + Sbjct 145 TGKH 148 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Burkholderia vietnamiensis G4] Sequence ID: A4JH35.1 Length: 148 Range 1: 25 to 148 Score:62.8 bits(151), Expect:2e-10, Method:Composition-based stats., Identities:41/124(33%), Positives:66/124(53%), Gaps:6/124(4%) Query 560 AGYDL-ICPEE-VTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL C + VT++PG+ +P L ++L +A +I +S + K G G+ Sbjct 25 AGLDLRACLDAPVTLQPGETTLVPTGLAIHLADPGYAALILPRSGLGHKHGIVLGNLVGL 84 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQ+ V +N + V+ + AQL+++ + + ++ERGE GFGS Sbjct 85 IDSDYQGQLMVSTWNRGQSEFVLNPFERLAQLVIVPVVQAQFNIVDDFAQSERGEGGFGS 144 Query 674 TGMY 677 TG + Sbjct 145 TGRH 148 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Pseudomonas syringae pv. tomato str. DC3000] Sequence ID: Q88BD3.1 Length: 151 Range 1: 28 to 151 Score:62.8 bits(151), Expect:2e-10, Method:Composition-based stats., Identities:41/124(33%), Positives:63/124(50%), Gaps:6/124(4%) Query 560 AGYDL--ICPEEVTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL + E+ +EPGQ IP L + + A +I +S + K G G+ Sbjct 28 AGLDLRAMLKEDTLLEPGQTLLIPTGLSIYIGDPGLAALILPRSGLGHKHGIVLGNLVGL 87 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQG++ V +N + A I G + AQL+L+ + E E +++RG GFG Sbjct 88 IDSDYQGELMVSCWNRGQTAFTIAVGERIAQLVLVPVVQARFELVEEFDESQRGTGGFGH 147 Query 674 TGMY 677 +G + Sbjct 148 SGSH 151 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Ralstonia pseudosolanacearum GMI1000] Sequence ID: Q8XWL1.1 Length: 148 Range 1: 25 to 148 Score:62.4 bits(150), Expect:3e-10, Method:Composition-based stats., Identities:42/124(34%), Positives:64/124(51%), Gaps:6/124(4%) Query 560 AGYDL-ICPEE-VTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL C + +T+EPG IP + ++L +A +I +S M K G G+ Sbjct 25 AGLDLRACLDAPLTLEPGSTHLIPTGMAIHLADPGYAALILPRSGMGHKHGIVLGNLVGL 84 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQ+ + +N A V+ + AQL+++ +L ++ERG GFGS Sbjct 85 IDSDYQGQLMISTWNRGDTAFVLNPMERLAQLVIVPVVQAELNIVDAFAESERGAGGFGS 144 Query 674 TGMY 677 TG + Sbjct 145 TGRH 148 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Polynucleobacter necessarius STIR1] Sequence ID: B1XW28.1 Length: 149 Range 1: 26 to 147 Score:62.4 bits(150), Expect:3e-10, Method:Composition-based stats., Identities:42/122(34%), Positives:64/122(52%), Gaps:6/122(4%) Query 560 AGYDL-ICPEE-VTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL C +E +TI PGQ +P L + ++ ++A I +S + K G G+ Sbjct 26 AGLDLRACIDEAITIAPGQTVLVPTGLAIYVEDPRYAAFILPRSGLGHKHSIVLGNLVGL 85 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQ+ V +N + + AQL++M + +L+ E ++ RG GFGS Sbjct 86 IDSDYQGQLMVSTWNRGSTTFKLEPMERLAQLVVMPVQQVELKVVEEFTESSRGAGGFGS 145 Query 674 TG 675 TG Sbjct 146 TG 147 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Burkholderia ambifaria AMMD] Sequence ID: Q0BCK5.1 Length: 148 Range 1: 25 to 148 Score:62.0 bits(149), Expect:3e-10, Method:Composition-based stats., Identities:40/124(32%), Positives:66/124(53%), Gaps:6/124(4%) Query 560 AGYDL-ICPEE-VTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL C + VT++PG+ +P L ++L +A +I +S + K G G+ Sbjct 25 AGLDLRACLDAPVTLQPGETTLVPTGLAIHLADPGYAALILPRSGLGHKHGIVLGNLVGL 84 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQ+ V +N + V+ + AQL+++ + + +++RGE GFGS Sbjct 85 IDSDYQGQLMVSTWNRGQTEFVLNPFERLAQLVIVPVVQAQFNIVDDFAQSDRGEGGFGS 144 Query 674 TGMY 677 TG + Sbjct 145 TGRH 148 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [uncultured marine gamma proteobacterium EBAC31A08] Sequence ID: Q9F7S4.1 Length: 139 Range 1: 7 to 138 Score:62.0 bits(149), Expect:3e-10, Method:Composition-based stats., Identities:43/132(33%), Positives:68/132(51%), Gaps:8/132(6%) Query 553 LPKREE--DAGYDL--ICPEEVTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGV 607 LP+ E AG DL ++++ G + IPI + L+ A M+ +S + +K Sbjct 7 LPQYETKGSAGLDLRACLDSNLSLQAGTSQLIPIGFAMYLEDPGLAAMVIPRSGLGSKHG 66 Query 608 FTQG---GIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKT 664 G G+IDS YQG++ V +N + I G + AQ+I++ E E +T Sbjct 67 IVLGNLVGLIDSDYQGELMVPAWNRSDTDFEINPGDRIAQMIIVPVIQADFEIVDEFNET 126 Query 665 ERGEKGFGSTGM 676 +RGEKGFGS+G+ Sbjct 127 QRGEKGFGSSGI 138 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Aeromonas salmonicida subsp. salmonicida A449] Sequence ID: A4STD7.1 Length: 152 Range 1: 29 to 150 Score:62.4 bits(150), Expect:4e-10, Method:Composition-based stats., Identities:39/122(32%), Positives:62/122(50%), Gaps:6/122(4%) Query 560 AGYDL--ICPEEVTIEPGQVKCIPIELRLNLKKSQW-AMIATKSSMAAKGVFTQG---GI 613 AG DL + +T+ PG +P L ++++ A I +S + K G G+ Sbjct 29 AGMDLRALLDAPITLAPGDTILVPTGLAIHIQDPGLCATILPRSGLGHKHGIVLGNLVGL 88 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQ+ V ++N + + G + AQL++M + E ++ERGE GFGS Sbjct 89 IDSDYQGQLMVSVWNRGNDSFTMQPGERIAQLVIMPVVQASFQLVDEFNQSERGEGGFGS 148 Query 674 TG 675 +G Sbjct 149 SG 150 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Pseudomonas [fluorescens] SBW25] Sequence ID: C3K473.1 Length: 151 Range 1: 28 to 151 Score:62.0 bits(149), Expect:4e-10, Method:Composition-based stats., Identities:42/124(34%), Positives:62/124(50%), Gaps:6/124(4%) Query 560 AGYDL--ICPEEVTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL + E+ +EPGQ IP L + + A +I +S + K G G+ Sbjct 28 AGLDLRAMLKEDTVLEPGQTLLIPTGLSIYVGDPGLAALILPRSGLGHKHGIVLGNLVGL 87 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQG++ V +N + A I G + AQL+L+ E E +T+RG GFG Sbjct 88 IDSDYQGELMVSCWNRGQTAFNIAVGERIAQLVLVPVVQAHFELVEEFDETQRGAGGFGH 147 Query 674 TGMY 677 +G + Sbjct 148 SGSH 151 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Nakaseomyces glabratus CBS 138] Sequence ID: Q6FKQ6.1 Length: 144 Range 1: 15 to 143 Score:61.6 bits(148), Expect:5e-10, Method:Composition-based stats., Identities:39/129(30%), Positives:65/129(50%), Gaps:4/129(3%) Query 551 GILPKREE--DAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAK-GV 607 GI P + AGYD+ + I +P ++ + + + IA +S +A K G+ Sbjct 15 GIAPTKGSVYAAGYDIYASADYVIPAMGQGMVPTDISFTVPEGTYGRIAPRSGLAVKHGI 74 Query 608 FTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGES-RKTER 666 T G++D Y G++++I++N ++ I +G + AQLIL ES ++R Sbjct 75 QTGAGVVDRDYTGEVKIILFNHSQKDFEIKRGDRVAQLILEKIVDDAEVVVVESLEDSQR 134 Query 667 GEKGFGSTG 675 G GFGSTG Sbjct 135 GAGGFGSTG 143 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Streptomyces avermitilis MA-4680 = NBRC 14893] Sequence ID: Q82KK4.1 Length: 175 Range 1: 19 to 147 Score:62.4 bits(150), Expect:6e-10, Method:Composition-based stats., Identities:39/129(30%), Positives:68/129(52%), Gaps:6/129(4%) Query 553 LPKREE--DAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAK---GV 607 LP E DAG DL E ++PG+ +P + + L + A + +S +AA+ + Sbjct 19 LPAYEHPGDAGADLRTTESCELKPGERAVLPTGVSVALPEGYAAFVHPRSGLAARCGVAL 78 Query 608 FTQGGIIDSGYQGQIQVIMYNSN-KIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTER 666 G +D+GY+G+I+VI+ N + + +V + + AQL++ + + + E + R Sbjct 79 VNAPGTVDAGYRGEIKVIVVNLDPRESVRFERFDRIAQLVVQQVERVRFQEVAELPDSAR 138 Query 667 GEKGFGSTG 675 E GFGSTG Sbjct 139 AEGGFGSTG 147 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Actinobacillus succinogenes 130Z] Sequence ID: A6VK96.1 Length: 151 Range 1: 28 to 149 Score:61.6 bits(148), Expect:6e-10, Method:Composition-based stats., Identities:41/122(34%), Positives:61/122(50%), Gaps:6/122(4%) Query 560 AGYDL--ICPEEVTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL + E I+PG+ K IP L + + Q A +I +S + K G G+ Sbjct 28 AGLDLRALTDEAFEIQPGETKLIPTGLSVYIADPQLAAVILPRSGLGHKHGVVLGNLVGL 87 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQG + V M+N + + G + AQL+ + + E +T+RGE GFG Sbjct 88 IDSDYQGPLMVSMWNRSDKPFKVEVGDRIAQLVFVPVVQAEFNIVAEFEQTDRGEGGFGH 147 Query 674 TG 675 +G Sbjct 148 SG 149 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Idiomarina loihiensis L2TR] Sequence ID: Q5QZB6.1 Length: 151 Range 1: 28 to 149 Score:61.2 bits(147), Expect:8e-10, Method:Composition-based stats., Identities:41/122(34%), Positives:66/122(54%), Gaps:6/122(4%) Query 560 AGYDL-ICPEE-VTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL C ++ +TIEPGQ + I + + + +A I +S + K G G+ Sbjct 28 AGMDLRACLDQPLTIEPGQTQLIGTGIAMYIGDPNYAATILPRSGLGHKHGLVLGNLVGL 87 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQG+++V +N + A I G + AQL+++ ++ E +T+RGE GFG Sbjct 88 IDSDYQGELKVSCWNRSNQAYTIEPGDRIAQLVILPVVQAQMSIVEEFHETDRGEGGFGH 147 Query 674 TG 675 +G Sbjct 148 SG 149 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Sequence ID: A0KEM6.1 Length: 152 Range 1: 29 to 150 Score:61.2 bits(147), Expect:8e-10, Method:Composition-based stats., Identities:39/122(32%), Positives:61/122(50%), Gaps:6/122(4%) Query 560 AGYDL--ICPEEVTIEPGQVKCIPIELRLNLKKSQW-AMIATKSSMAAKGVFTQG---GI 613 AG DL + +T+ PG +P L ++++ A I +S + K G G+ Sbjct 29 AGMDLRALLDAPLTLAPGDTTLVPTGLAIHIQDPGLCATILPRSGLGHKHGIVLGNLVGL 88 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQ+ V ++N + G + AQL++M + E ++ERGE GFGS Sbjct 89 IDSDYQGQLMVSVWNRGNDNFTMQPGERIAQLVIMPVVQASFQLVDEFNQSERGEGGFGS 148 Query 674 TG 675 +G Sbjct 149 SG 150 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Ectopseudomonas mendocina ymp] Sequence ID: A4Y0K9.1 Length: 151 Range 1: 28 to 151 Score:61.2 bits(147), Expect:9e-10, Method:Composition-based stats., Identities:41/124(33%), Positives:61/124(49%), Gaps:6/124(4%) Query 560 AGYDL--ICPEEVTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL + E++ +EPGQ IP L + + A MI +S + K G G+ Sbjct 28 AGLDLRAMLKEDIVLEPGQTVLIPTGLSIYIGDPGLAAMILPRSGLGHKHGIVLGNLVGL 87 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQG++ V +N I G + AQL+L+ E + +T+RG GFG Sbjct 88 IDSDYQGELMVSCWNRGHTPFTIAIGERIAQLVLVPVVQAHFELVEQFDETQRGAGGFGH 147 Query 674 TGMY 677 +G + Sbjct 148 SGSH 151 >RecName: Full=Putative enzymatic polyprotein; Includes: RecName: Full=Protease; Short=PR; Includes: RecName: Full=Reverse transcriptase; Short=RT; Includes: RecName: Full=Ribonuclease H [Cassava vein mosaic virus] Sequence ID: Q89703.1 Length: 652 Range 1: 192 to 448 Score:65.5 bits(158), Expect:9e-10, Method:Compositional matrix adjust., Identities:78/281(28%), Positives:129/281(45%), Gaps:46/281(16%) Query 2 ITKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWT--CNTPIFCIK 59 + K++LK + P E L I+++++EG + + ++P F + Sbjct 192 LAKIELKNETDNIYKPPMLYQETDLPEFKMHIEEMIKEGFIEEKTNFEDKKYSSPAFIVN 251 Query 60 KKS----GKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKK----KHVTILDIGDAYFT 111 K S GK RM+ID+++LNK+ + + + +P+ L + ++ + D ++ Sbjct 252 KHSEQKRGKTRMVIDYKDLNKKAKVV---KYPIPNKDTLIHRSIQARYYSKFDCKSGFYH 308 Query 112 IPLYEPYREYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPE 171 I L E ++YT FT+ P Y WKVLP G+ SPS++Q M I P Sbjct 309 IKLEEDSKKYTAFTV-------PQGYYQWKVLPFGYHNSPSIFQQFMDRIF------RPY 355 Query 172 IQFGI-YMDDIYIGS------DLEIKKHREIVKDLAN--YIAQYGFTLPEEKRQKGYPAK 222 F I Y+DDI + S + I K R+I LAN I++ L +EK Sbjct 356 YDFIIVYIDDILVFSKTIEEHKIHIAKFRDIT--LANGLIISKKKTELCKEK------ID 407 Query 223 WLGFELHPQTWKFQKHTLPE-LTKGTITLNK--LQKLVGEL 260 +LG ++ + Q H + + L K T NK LQ ++G L Sbjct 408 FLGVQIEQGGIELQPHIINKILEKHTKIKNKTELQSILGLL 448 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Desulfitobacterium hafniense DCB-2] Sequence ID: B8FQZ6.1 Length: 151 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Desulfitobacterium hafniense Y51] Sequence ID: Q24UJ8.1 Length: 151 Range 1: 28 to 150 Score:60.8 bits(146), Expect:1e-09, Method:Composition-based stats., Identities:42/123(34%), Positives:65/123(52%), Gaps:6/123(4%) Query 560 AGYDLICP--EEVTIEPGQVKCIPIELRLNLKKSQ-WAMIATKSSMAAK---GVFTQGGI 613 AG DL +E+TIEPGQ+ IP L + L + A + +S +A+K + G+ Sbjct 28 AGVDLQASLDQELTIEPGQIVKIPTGLAIELPHAGVGAFVFARSGLASKYGLALANGVGV 87 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS Y+G+I V + N V+ G + AQ++ + G+ + +T RG GFGS Sbjct 88 IDSDYRGEILVAVINQGSEPFVVKDGDRIAQMVFLPVFIGEFYLADQLDETGRGCGGFGS 147 Query 674 TGM 676 TG+ Sbjct 148 TGV 150 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Saccharomyces cerevisiae S288C] Sequence ID: P33317.2 Length: 147 Range 1: 29 to 146 Score:60.5 bits(145), Expect:1e-09, Method:Composition-based stats., Identities:34/118(29%), Positives:62/118(52%), Gaps:2/118(1%) Query 560 AGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAK-GVFTQGGIIDSGY 618 AGYD+ +++TI + ++ + + IA +S +A K G+ T G++D Y Sbjct 29 AGYDIYASQDITIPAMGQGMVSTDISFTVPVGTYGRIAPRSGLAVKNGIQTGAGVVDRDY 88 Query 619 QGQIQVIMYNSNKIAVVIPQGRKFAQLILMD-KKHGKLEPWGESRKTERGEKGFGSTG 675 G+++V+++N ++ I +G + AQLIL ++ ++ RG GFGSTG Sbjct 89 TGEVKVVLFNHSQRDFAIKKGDRVAQLILEKIVDDAQIVVVDSLEESARGAGGFGSTG 146 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Bordetella avium 197N] Sequence ID: Q2L2L5.1 Length: 149 Range 1: 26 to 147 Score:60.5 bits(145), Expect:1e-09, Method:Composition-based stats., Identities:40/122(33%), Positives:63/122(51%), Gaps:6/122(4%) Query 560 AGYDL-ICPEE-VTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL C ++ +T+EPG +P L +++ +A +I +S + K G G+ Sbjct 26 AGLDLRACIDKAITLEPGATTLVPTGLAIHVADPGYAAIILPRSGLGHKHGIVLGNLVGL 85 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQ+ V +N + A + + AQL+++ + E +ERG GFGS Sbjct 86 IDSDYQGQLMVSTWNRGQTAFTLEPMERLAQLVIVPVQQVSFNVVDEFGASERGAGGFGS 145 Query 674 TG 675 TG Sbjct 146 TG 147 >RecName: Full=Gag-Pro polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein; Contains: RecName: Full=p12; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease 17 kDa; Contains: RecName: Full=Protease 13 kDa; Contains: RecName: Full=G-patch peptide [Jaagsiekte sheep retrovirus] Sequence ID: P31625.3 Length: 866 Range 1: 601 to 718 Score:65.1 bits(157), Expect:1e-09, Method:Compositional matrix adjust., Identities:39/124(31%), Positives:66/124(53%), Gaps:7/124(5%) Query 560 AGYDLICPEEVTIEPGQ-VKCIPIELRLNLKKSQWAMIATKSSMAAKGVFTQGGIIDSGY 618 AG DL + P V+ + + L ++ +SS + KG+ G+IDS Y Sbjct 601 AGLDLCATSYTVLTPEMGVQTLATGVFGPLPPGTVGLLLGRSSASLKGILIHPGVIDSDY 660 Query 619 QGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGSTGMYW 678 G+I+++ NKI +VI G++ AQL+L+ L G++ +R +KGFGS+ YW Sbjct 661 TGEIKILASAPNKI-IVINAGQRIAQLLLV-----PLVIQGKTINRDRQDKGFGSSDAYW 714 Query 679 IENI 682 ++N+ Sbjct 715 VQNV 718 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Tolumonas auensis DSM 9187] Sequence ID: C4L816.1 Length: 151 Range 1: 28 to 151 Score:60.5 bits(145), Expect:2e-09, Method:Composition-based stats., Identities:41/124(33%), Positives:60/124(48%), Gaps:6/124(4%) Query 560 AGYDL-ICPEE-VTIEPGQVKCIPIELRLNLKKSQW-AMIATKSSMAAKGVFTQG---GI 613 AG DL C + V + PG+ + IP L +++ A I +S + K G G+ Sbjct 28 AGLDLRACLDAAVVLAPGETQLIPTGLAIHIADPGLCATILPRSGLGHKHGIVLGNLVGL 87 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQ+ V ++N I G + AQL+ M + +ERGE GFGS Sbjct 88 IDSDYQGQLMVSVWNRGNTTFTIQPGERIAQLVFMPVVQASFNIVDDFDTSERGEGGFGS 147 Query 674 TGMY 677 +G + Sbjct 148 SGRH 151 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Hahella chejuensis KCTC 2396] Sequence ID: Q2SN67.1 Length: 152 Range 1: 20 to 150 Score:60.5 bits(145), Expect:2e-09, Method:Composition-based stats., Identities:43/131(33%), Positives:63/131(48%), Gaps:8/131(6%) Query 553 LPKREED--AGYDL--ICPEEVTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGV 607 LP D AG DL E VT++PG+ IP + ++L A M+ +S + K Sbjct 20 LPAYATDGSAGLDLRACLAEPVTLQPGETTLIPTGMAIHLSDPGLAAMLLPRSGLGHKHG 79 Query 608 FTQG---GIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKT 664 G G+IDS YQG++ V +N A I G + AQ++++ E + + Sbjct 80 IVLGNLVGLIDSDYQGEVMVSCWNRGNEAFTISVGERIAQMVIVPVVQVGFEIVDDFDDS 139 Query 665 ERGEKGFGSTG 675 RG GFGSTG Sbjct 140 SRGAGGFGSTG 150 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Azotobacter vinelandii DJ] Sequence ID: C1DI55.1 Length: 151 Range 1: 28 to 151 Score:60.5 bits(145), Expect:2e-09, Method:Composition-based stats., Identities:38/124(31%), Positives:63/124(50%), Gaps:6/124(4%) Query 560 AGYDL--ICPEEVTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL + EE+T+EPGQ IP L +++ A ++ +S + K G G+ Sbjct 28 AGLDLRAMLQEELTLEPGQTALIPTGLAIHIADPGLAALVLPRSGLGHKHGIVLGNLVGL 87 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQG++ + +N + I G + AQL+L+ + +++RG GFG Sbjct 88 IDSDYQGELMISCWNRGQSTFRIAVGERIAQLVLVPVMQAHFQLVESFDESQRGAGGFGH 147 Query 674 TGMY 677 +G + Sbjct 148 SGSH 151 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Haemophilus influenzae PittEE] Sequence ID: A5UDB4.1 Length: 151 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Haemophilus influenzae PittGG] Sequence ID: A5UI95.1 Length: 151 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Haemophilus influenzae Rd KW20] Sequence ID: P43792.1 Length: 151 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Haemophilus influenzae 86-028NP] Sequence ID: Q4QLV3.1 Length: 151 Range 1: 25 to 149 Score:60.5 bits(145), Expect:2e-09, Method:Compositional matrix adjust., Identities:42/125(34%), Positives:61/125(48%), Gaps:6/125(4%) Query 557 EEDAGYDL--ICPEEVTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG-- 611 E AG DL + E I+PG+ K IP L + + A +I +S + K G Sbjct 25 EGSAGLDLRALIDESFEIQPGETKLIPTGLSIYIADPNLAAVILPRSGLGHKHGIVLGNL 84 Query 612 -GIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKG 670 G+IDS YQG + V M+N I G + AQL+ + + + ++TERGE G Sbjct 85 VGLIDSDYQGPLMVSMWNRGNEPFKIEVGDRIAQLVFVPVVQAEFNIVEDFQQTERGEGG 144 Query 671 FGSTG 675 FG +G Sbjct 145 FGHSG 149 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Burkholderia lata] Sequence ID: Q39DM5.1 Length: 148 Range 1: 25 to 148 Score:60.1 bits(144), Expect:2e-09, Method:Composition-based stats., Identities:38/124(31%), Positives:66/124(53%), Gaps:6/124(4%) Query 560 AGYDL-ICPEE-VTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL C + VT++PG+ +P L ++L +A +I +S + K G G+ Sbjct 25 AGLDLRACLDAPVTLQPGETTLVPTGLAIHLADPGYAALILPRSGLGHKHGIVLGNLVGL 84 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQ+ + +N + V+ + AQL+++ + + +++RG+ GFGS Sbjct 85 IDSDYQGQLMISTWNRGQTEFVLNPFERLAQLVIVPVVQAQFNIVDDFAESDRGDGGFGS 144 Query 674 TGMY 677 TG + Sbjct 145 TGRH 148 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Herminiimonas arsenicoxydans] Sequence ID: A4G3E3.1 Length: 149 Range 1: 26 to 149 Score:60.1 bits(144), Expect:2e-09, Method:Composition-based stats., Identities:42/124(34%), Positives:63/124(50%), Gaps:6/124(4%) Query 560 AGYDL-ICPEE-VTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL C E +TI+PG+ IP L +++ +A +I +S M K G G+ Sbjct 26 AGLDLRACIEAPITIKPGETHLIPTGLAIHIGNPAYAAVILPRSGMGHKHGIVLGNLVGL 85 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQ+ V +N + V+ + AQL+++ + +ERG GFGS Sbjct 86 IDSDYQGQLMVSTWNRGQAEFVLNPMERLAQLVIVPVLQVGFNIVDDFDSSERGAGGFGS 145 Query 674 TGMY 677 TG + Sbjct 146 TGKH 149 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Bordetella parapertussis 12822] Sequence ID: Q7W8Z8.1 Length: 149 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Bordetella bronchiseptica RB50] Sequence ID: Q7WKE3.1 Length: 149 Range 1: 26 to 147 Score:60.1 bits(144), Expect:2e-09, Method:Composition-based stats., Identities:41/122(34%), Positives:61/122(50%), Gaps:6/122(4%) Query 560 AGYDL-ICPE-EVTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL C E + IEPGQ +P L +++ ++A MI +S + K G G+ Sbjct 26 AGLDLRACTEASLVIEPGQTVLVPTGLAIHIGDPRYAAMILPRSGLGHKHGIVLGNLVGL 85 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQ+ V +N + + AQL+++ + + +ERG GFGS Sbjct 86 IDSDYQGQLMVSTWNRGTQPFTLDPMERLAQLVIVPVQQVAFNVVEDFDASERGAGGFGS 145 Query 674 TG 675 TG Sbjct 146 TG 147 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Bordetella pertussis Tohama I] Sequence ID: Q7VVR1.1 Length: 149 Range 1: 26 to 147 Score:60.1 bits(144), Expect:2e-09, Method:Composition-based stats., Identities:41/122(34%), Positives:61/122(50%), Gaps:6/122(4%) Query 560 AGYDL-ICPE-EVTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL C E + IEPGQ +P L +++ ++A MI +S + K G G+ Sbjct 26 AGLDLRACTEASLVIEPGQTVLVPTGLAIHIGDPRYAAMILPRSGLGHKHGIVLGNLVGL 85 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQ+ V +N + + AQL+++ + + +ERG GFGS Sbjct 86 IDSDYQGQLMVSTWNRGTQPFTLDPMERLAQLVIVPVQQVAFNVVEDFDASERGAGGFGS 145 Query 674 TG 675 TG Sbjct 146 TG 147 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Helicobacter pylori P12] Sequence ID: B6JM89.1 Length: 145 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Helicobacter pylori HPAG1] Sequence ID: Q1CT07.1 Length: 145 Range 1: 12 to 142 Score:59.7 bits(143), Expect:2e-09, Method:Composition-based stats., Identities:40/131(31%), Positives:67/131(51%), Gaps:5/131(3%) Query 551 GILPK--REEDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAKG-- 606 ++PK E +G+DL EEVTI+P V + I + L+L+ + T+S +A Sbjct 12 ALIPKYQTEGSSGFDLHAVEEVTIKPHSVGLVKIGICLSLEVGYELQVRTRSGLALNHQV 71 Query 607 -VFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTE 665 V G +D+ Y+G+I+VI+ N + + G + AQ ++ + + +T Sbjct 72 MVLNSPGTVDNDYRGEIKVILANLSDKDFKVQVGDRIAQGVVQKTYKAEFIECEQLDETS 131 Query 666 RGEKGFGSTGM 676 RG GFGSTG+ Sbjct 132 RGSGGFGSTGV 142 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Neisseria meningitidis Z2491] Sequence ID: Q9JUW1.1 Length: 150 Range 1: 27 to 150 Score:59.7 bits(143), Expect:2e-09, Method:Composition-based stats., Identities:37/124(30%), Positives:65/124(52%), Gaps:6/124(4%) Query 560 AGYDL--ICPEEVTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL EEV ++PG+ +P L + L +A ++ +S + K G G+ Sbjct 27 AGLDLRACLDEEVVLQPGETFLVPTGLAIYLADPSYAAVLLPRSGLGHKHGIVLGNLVGL 86 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQG+++V ++N + + + AQ++++ + + E + RGE GFGS Sbjct 87 IDSDYQGELKVSLWNRSSEPFTVKPFERIAQMVIVPIVQARFKRVEEFVGSSRGEGGFGS 146 Query 674 TGMY 677 TG++ Sbjct 147 TGLH 150 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Methylobacillus flagellatus KT] Sequence ID: Q1H4K3.1 Length: 150 Range 1: 27 to 148 Score:59.7 bits(143), Expect:3e-09, Method:Composition-based stats., Identities:40/122(33%), Positives:62/122(50%), Gaps:6/122(4%) Query 560 AGYDL-ICPEEV-TIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL C E T+ PG+ IP + ++L +A +I +S + K G G+ Sbjct 27 AGLDLRACTEHTQTLAPGETIMIPTGMAIHLADPHYAALILPRSGLGHKHGIVLGNLVGL 86 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQ+ V +N K + ++ + AQL+++ + + +ERG GFGS Sbjct 87 IDSDYQGQLLVSCWNRGKESFILNPLERIAQLVIVPVMQANFNIVDDFQASERGTGGFGS 146 Query 674 TG 675 TG Sbjct 147 TG 148 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Paraburkholderia xenovorans LB400] Sequence ID: Q13UV8.1 Length: 148 Range 1: 25 to 148 Score:59.7 bits(143), Expect:3e-09, Method:Composition-based stats., Identities:38/124(31%), Positives:65/124(52%), Gaps:6/124(4%) Query 560 AGYDL-ICPEE-VTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL C +E +T++PG+ +P L +++ +A +I +S + K G G+ Sbjct 25 AGLDLRACLDEPLTLKPGETALVPTGLAIHVGDPGYAALILPRSGLGHKHGIVLGNLVGL 84 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQ+ + +N + V+ + AQL+++ + + +ERG GFGS Sbjct 85 IDSDYQGQLMISTWNRGETTFVLNPMERLAQLVIVPVVQAEFNIVDDFETSERGAGGFGS 144 Query 674 TGMY 677 TG + Sbjct 145 TGKH 148 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Orientia tsutsugamushi str. Ikeda] Sequence ID: B3CSS7.1 Length: 148 Range 1: 12 to 147 Score:59.7 bits(143), Expect:3e-09, Method:Composition-based stats., Identities:41/136(30%), Positives:69/136(50%), Gaps:7/136(5%) Query 548 EGEGILPKREED--AGYDLICP--EEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMA 603 EG LP + AG DL + I+P + +P + ++L A I ++S +A Sbjct 12 EGTSSLPAYSTNGSAGMDLYAAIASPMIIKPHETALVPAGIAISLPYGYEAQIRSRSGLA 71 Query 604 AKG---VFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGE 660 +K V G IDS Y+G++++IM N + + + AQ+++ + E + Sbjct 72 SKFGVIVLNSPGTIDSDYRGELKIIMINLGQKDFQLTPAMRIAQMVIAKYEVISWEIVDD 131 Query 661 SRKTERGEKGFGSTGM 676 +TERGEKGFGS+G+ Sbjct 132 LDETERGEKGFGSSGL 147 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Stutzerimonas stutzeri A1501] Sequence ID: A4VGS6.1 Length: 151 Range 1: 28 to 151 Score:59.7 bits(143), Expect:3e-09, Method:Composition-based stats., Identities:38/124(31%), Positives:62/124(50%), Gaps:6/124(4%) Query 560 AGYDL--ICPEEVTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL + ++ +EPGQ IP L +++ A ++ +S + K G G+ Sbjct 28 AGLDLRAMLQQDTVLEPGQTLLIPTGLAIHIADPTLAALVLPRSGLGHKHGIVLGNLVGL 87 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQG++ V +N + A I G + AQL+L+ + E ++RG GFG Sbjct 88 IDSDYQGELMVSCWNRGQSAFTIAVGERIAQLMLVPVVQARFELVDSFDSSDRGAGGFGH 147 Query 674 TGMY 677 +G + Sbjct 148 SGSH 151 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Desulfotalea psychrophila LSv54] Sequence ID: Q6AJZ0.1 Length: 150 Range 1: 20 to 150 Score:59.3 bits(142), Expect:3e-09, Method:Composition-based stats., Identities:43/131(33%), Positives:61/131(46%), Gaps:7/131(5%) Query 553 LPKREED--AGYDLIC--PEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAK--- 605 LP E + AG D+ + TIEPG + IP L + + +S +A K Sbjct 20 LPAYETEGAAGMDVAACLDADCTIEPGDIVLIPTGFALAIPTGYEIQVRPRSGLAIKHGL 79 Query 606 GVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTE 665 V G ID+ Y+G++ V + N + AV I G + AQL+L + E TE Sbjct 80 TVVNAPGTIDADYRGEVGVGLINLGRQAVTIHHGDRIAQLVLAPVLQARWTVVTELEATE 139 Query 666 RGEKGFGSTGM 676 RG GFG TG+ Sbjct 140 RGAGGFGHTGV 150 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Shewanella denitrificans OS217] Sequence ID: Q12SF7.1 Length: 152 Range 1: 29 to 150 Score:59.3 bits(142), Expect:3e-09, Method:Composition-based stats., Identities:38/122(31%), Positives:62/122(50%), Gaps:6/122(4%) Query 560 AGYDL--ICPEEVTIEPGQVKCIPIELRLNLKK-SQWAMIATKSSMAAKGVFTQG---GI 613 AG DL + E+T+ PG+ K IP + +++ S A+I +S + K G G+ Sbjct 29 AGMDLRAMVDTELTLAPGETKLIPTGIAIHVADPSLAAVILPRSGLGHKHGIVLGNLVGL 88 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQG + V +N + + G + AQL+ + + E +++RGE GFG Sbjct 89 IDSDYQGPLMVSCWNRSDTPFTLTLGERLAQLVFVPVVQAQFTLVDEFERSDRGEGGFGH 148 Query 674 TG 675 +G Sbjct 149 SG 150 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Burkholderia multivorans ATCC 17616] Sequence ID: A9AGN3.1 Length: 148 Range 1: 25 to 148 Score:59.3 bits(142), Expect:4e-09, Method:Composition-based stats., Identities:39/124(31%), Positives:64/124(51%), Gaps:6/124(4%) Query 560 AGYDL-ICPEE-VTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL C + +T++PG +P L ++L +A +I +S + K G G+ Sbjct 25 AGLDLRACLDAPLTLKPGDTALVPTGLAIHLADPNYAALILPRSGLGHKHGIVLGNLVGL 84 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQ+ V +N + V+ + AQL+++ + + ++ERG GFGS Sbjct 85 IDSDYQGQLMVSTWNRGQTEFVLNPFERLAQLVIVPVVQAQFNIVDDFAQSERGAGGFGS 144 Query 674 TGMY 677 TG + Sbjct 145 TGRH 148 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Pseudomonas entomophila L48] Sequence ID: Q1I2U1.1 Length: 151 Range 1: 28 to 149 Score:59.3 bits(142), Expect:4e-09, Method:Composition-based stats., Identities:41/122(34%), Positives:59/122(48%), Gaps:6/122(4%) Query 560 AGYDL--ICPEEVTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL + E+ +EPGQ IP L + + A MI +S + K G G+ Sbjct 28 AGLDLRALLKEDTVLEPGQTLLIPTGLSVYIGDPGLAAMILPRSGLGHKHGVVLGNLVGL 87 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQG++ V +N I G + AQLIL+ + + +T+RG GFG Sbjct 88 IDSDYQGELMVSCWNRGNTPFTITIGERIAQLILVPVVQAHFDIVEQFDETQRGTGGFGH 147 Query 674 TG 675 +G Sbjct 148 SG 149 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Nitrosomonas eutropha C91] Sequence ID: Q0AHX8.1 Length: 149 Range 1: 26 to 147 Score:58.9 bits(141), Expect:4e-09, Method:Composition-based stats., Identities:40/122(33%), Positives:63/122(51%), Gaps:6/122(4%) Query 560 AGYDL-ICPEEVT-IEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL C +E T I PG+ IP + ++L +A ++ +S + K G G+ Sbjct 26 AGLDLRACIDERTEIHPGETLLIPSGIAIHLANPGFAAVVLPRSGLGHKHGIVLGNLVGL 85 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQI V +N + + + AQL+++ + + ++RGE+GFGS Sbjct 86 IDSDYQGQILVSCWNRGQTTFALEPLERIAQLVIVPVIQASFNVVNDFQHSQRGERGFGS 145 Query 674 TG 675 TG Sbjct 146 TG 147 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Pseudomonas putida W619] Sequence ID: B1J4L9.1 Length: 151 Range 1: 28 to 151 Score:58.9 bits(141), Expect:4e-09, Method:Composition-based stats., Identities:40/124(32%), Positives:59/124(47%), Gaps:6/124(4%) Query 560 AGYDL--ICPEEVTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL + E+ +EPGQ IP L + + A MI +S + K G G+ Sbjct 28 AGLDLRALLKEDTVLEPGQTLLIPTGLSIYIGDPGLAAMILPRSGLGHKHGIVLGNLVGL 87 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQG++ V +N I G + AQL+L+ E +++RG GFG Sbjct 88 IDSDYQGELMVSCWNRGNTPFTIAVGERIAQLVLVPVVQAHFEVVEAFDESQRGTGGFGH 147 Query 674 TGMY 677 +G + Sbjct 148 SGSH 151 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Paraburkholderia phytofirmans PsJN] Sequence ID: B2T6J1.1 Length: 148 Range 1: 25 to 148 Score:58.9 bits(141), Expect:4e-09, Method:Composition-based stats., Identities:37/124(30%), Positives:66/124(53%), Gaps:6/124(4%) Query 560 AGYDL-ICPEE-VTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL C +E +T++PG+ +P L +++ + +A +I +S + K G G+ Sbjct 25 AGLDLRACLDEALTLKPGETALVPTGLAIHVGDAGYAALILPRSGLGHKHGIVLGNLVGL 84 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQ+ + +N + V+ + AQL+++ + + ++RG GFGS Sbjct 85 IDSDYQGQLMISTWNRGETTFVLNPMERLAQLVIVPVVQAEFNIVDDFETSDRGAGGFGS 144 Query 674 TGMY 677 TG + Sbjct 145 TGKH 148 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Hydrogenovibrio crunogenus XCL-2] Sequence ID: Q31EC7.1 Length: 153 Range 1: 29 to 153 Score:58.9 bits(141), Expect:5e-09, Method:Composition-based stats., Identities:44/127(35%), Positives:69/127(54%), Gaps:11/127(8%) Query 560 AGYDL-ICPE-EVTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL C E ++ IEPGQ IP + ++L A M+ +S + K G G+ Sbjct 29 AGLDLRACIENDMIIEPGQTVLIPTGMAIHLDDPGLAAMLLPRSGLGHKHGIVLGNLVGL 88 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLIL---MDKKHGKLEPWGESRKTERGEKG 670 IDS YQG + V +N ++ A + G + AQ+++ + ++E +G++ TERGE G Sbjct 89 IDSDYQGPLMVSCWNRSEEAYNVTVGERIAQMVIVPVLQPVFTQVEEFGDA--TERGEGG 146 Query 671 FGSTGMY 677 FG TG + Sbjct 147 FGHTGSH 153 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Actinobacillus pleuropneumoniae serovar 5b str. L20] Sequence ID: A3N3Q6.1 Length: 151 Range 1: 25 to 149 Score:58.9 bits(141), Expect:5e-09, Method:Composition-based stats., Identities:38/125(30%), Positives:60/125(48%), Gaps:6/125(4%) Query 557 EEDAGYDL--ICPEEVTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG-- 611 E AG DL + +T+ PGQ IP + + + A +I +S + K G Sbjct 25 EGSAGLDLRALTESALTVAPGQTVLIPTGISIYIADPNLAAVILPRSGLGHKNGIVLGNL 84 Query 612 -GIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKG 670 G+IDS YQG + V ++N + + G + AQL+ + + + +TERGE G Sbjct 85 VGLIDSDYQGPLMVSLWNRSDKPFTVEVGDRIAQLVFVPVVQARFNIVNDFAQTERGEGG 144 Query 671 FGSTG 675 FG +G Sbjct 145 FGHSG 149 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Tropheryma whipplei str. Twist] Sequence ID: Q83G43.1 Length: 146 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Tropheryma whipplei TW08/27] Sequence ID: Q83I22.1 Length: 146 Range 1: 10 to 142 Score:58.5 bits(140), Expect:5e-09, Method:Composition-based stats., Identities:39/133(29%), Positives:65/133(48%), Gaps:6/133(4%) Query 551 GILPKR--EEDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAKGVF 608 G P+R + DAG+DL I+P + + + + L I +S +A++ Sbjct 10 GYTPQRAFDGDAGFDLQSSHTAVIQPRCRQVVKTGIAIALPDGYAGFIMPRSGLASENGI 69 Query 609 T---QGGIIDSGYQGQIQVIMYNSN-KIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKT 664 T G+ID+GY+G+I V++ N++ A I QG + AQL++M H + Sbjct 70 TLVNSPGVIDAGYRGEISVVLINTDLHQAFHISQGDRIAQLVIMPVCHASFIEVDTLPGS 129 Query 665 ERGEKGFGSTGMY 677 RG FGS+G + Sbjct 130 ARGISAFGSSGRH 142 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Pseudomonas savastanoi pv. phaseolicola 1448A] Sequence ID: Q48Q06.1 Length: 151 Range 1: 28 to 151 Score:58.9 bits(141), Expect:6e-09, Method:Composition-based stats., Identities:40/124(32%), Positives:61/124(49%), Gaps:6/124(4%) Query 560 AGYDL--ICPEEVTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL + E+ +EPGQ IP L + + A +I +S + K G G+ Sbjct 28 AGLDLRAMLKEDTVLEPGQTLLIPTGLSIYIGDPGLAALILPRSGLGHKHGIVLGNLVGL 87 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQG++ V +N + A I G + AQL+L+ E +++RG GFG Sbjct 88 IDSDYQGELMVSCWNRGQTAFNIAVGERIAQLVLVPVVQAHFELVEAFDESQRGAGGFGH 147 Query 674 TGMY 677 +G + Sbjct 148 SGSH 151 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Janthinobacterium sp. Marseille] Sequence ID: A6SW68.1 Length: 149 Range 1: 26 to 149 Score:58.5 bits(140), Expect:6e-09, Method:Composition-based stats., Identities:42/124(34%), Positives:62/124(50%), Gaps:6/124(4%) Query 560 AGYDL-ICPEE-VTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL C + +TI+PG+ +P L ++L +A MI +S M K G G+ Sbjct 26 AGLDLRACLDAPITIKPGETHLVPTGLAIHLADPGYAAMILPRSGMGHKHGIVLGNLVGL 85 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQ+ V +N + + + AQL+++ E +ERG GFGS Sbjct 86 IDSDYQGQLMVSTWNRGQTEFTLNPMERLAQLVIVPVLQVGFNVVEEFDTSERGIGGFGS 145 Query 674 TGMY 677 TG + Sbjct 146 TGKH 149 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Sequence ID: P61909.1 Length: 145 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Leptospira interrogans serovar Lai str. 56601] Sequence ID: Q8F729.1 Length: 145 Range 1: 16 to 144 Score:58.5 bits(140), Expect:6e-09, Method:Compositional matrix adjust., Identities:38/129(29%), Positives:64/129(49%), Gaps:6/129(4%) Query 553 LPKREEDAGYDL--ICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAKG---V 607 L + ++ AGYD+ ++ +EPG V +P L + + I +S + K + Sbjct 16 LLQTKQAAGYDIHACLDSKLVLEPGNVGLVPTGLSFAIPQEFHFEIRPRSGFSTKNRILI 75 Query 608 FTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGE-SRKTER 666 G IDS Y+G++ + + N + +I G + AQL++ + E E + +TER Sbjct 76 PNSPGTIDSDYRGELMIPLLNLGDSSFIIEHGMRIAQLLIRKTWYADWELVSEFADRTER 135 Query 667 GEKGFGSTG 675 G GFGSTG Sbjct 136 GANGFGSTG 144 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Burkholderia thailandensis E264] Sequence ID: Q2T0H6.1 Length: 148 Range 1: 16 to 148 Score:58.5 bits(140), Expect:6e-09, Method:Composition-based stats., Identities:41/133(31%), Positives:67/133(50%), Gaps:8/133(6%) Query 553 LPKREE--DAGYDL-ICPEE-VTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGV 607 LPK AG DL C + VT++PG +P L ++L +A +I +S + K Sbjct 16 LPKYATTGSAGLDLRACLDAPVTLKPGDTALVPTGLAIHLADPGYAALILPRSGLGHKHG 75 Query 608 FTQG---GIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKT 664 G G+IDS YQG++ + +N + V+ + AQL+++ G+ ++ Sbjct 76 IVLGNLVGLIDSDYQGELMISTWNRGQTEFVLNPFERLAQLVIVPVVQATFNIVGDFAQS 135 Query 665 ERGEKGFGSTGMY 677 +RG GFGSTG + Sbjct 136 DRGAGGFGSTGRH 148 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Swinepox virus (STRAIN KASZA)] Sequence ID: P32208.1 Length: 142 Range 1: 14 to 142 Score:58.2 bits(139), Expect:7e-09, Method:Composition-based stats., Identities:38/129(29%), Positives:63/129(48%), Gaps:3/129(2%) Query 551 GILPKREED--AGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAK-GV 607 I+P R AGYDL T++P + ++ L + + I+ +S ++ + Sbjct 14 AIIPNRSMSGSAGYDLYSAYSYTVKPYNRILVRTDICLMIPDKCYGRISPRSGLSLNYNI 73 Query 608 FTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERG 667 GG+IDS Y+G+I ++ N+ I G + AQ+I ++ +E TERG Sbjct 74 DIGGGVIDSDYRGEIGIVFINNGCSDFNIKVGDRIAQIIFERVEYPIMEEVKCLEDTERG 133 Query 668 EKGFGSTGM 676 GFGS+GM Sbjct 134 NSGFGSSGM 142 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Neurospora crassa OR74A] Sequence ID: Q6MVL2.1 Length: 165 Range 1: 29 to 126 Score:58.9 bits(141), Expect:7e-09, Method:Composition-based stats., Identities:31/98(32%), Positives:55/98(56%), Gaps:3/98(3%) Query 553 LPKREED--AGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAKGVFTQ 610 LP R AGYD+ +E TI + ++ + + + IA +S +AAK Sbjct 29 LPTRGSAFAAGYDIYASKETTIPARGKGLVETDISMAVPAGTYGRIAPRSGLAAKNFIDV 88 Query 611 G-GIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLIL 647 G G+ID+ Y+GQ++V+++N + + V+ +G + AQL+L Sbjct 89 GAGVIDADYRGQVKVLLFNHSDVDFVVNEGDRVAQLVL 126 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Sequence ID: Q5ZSN0.2 Length: 152 Range 1: 8 to 152 Score:58.5 bits(140), Expect:7e-09, Method:Composition-based stats., Identities:43/145(30%), Positives:73/145(50%), Gaps:9/145(6%) Query 542 EIFLAKEGEGI-LPKREED--AGYDL-IC-PEEVTIEPGQVKCIPIELRLNLKKSQWA-M 595 +I ++ G+ I LP D AG DL +C E + + P Q +P + + + + A + Sbjct 8 KILDSRIGDTIPLPAYATDGSAGLDLRVCISEPMQVAPQQTVLLPTGIAIYIADPKLAAV 67 Query 596 IATKSSMAAKGVFTQG---GIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKH 652 I +S + K G G+IDS YQG++++ +N ++ + G + AQL+ + Sbjct 68 ILPRSGLGHKNGIVLGNLVGLIDSDYQGELKISCWNRSQEHFTVNPGDRIAQLVFIPVVQ 127 Query 653 GKLEPWGESRKTERGEKGFGSTGMY 677 E E ++ RGE GFGS+G Y Sbjct 128 ASFEVVNEFTESSRGEGGFGSSGRY 152 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Legionella pneumophila str. Lens] Sequence ID: Q5WTW6.1 Length: 152 Range 1: 8 to 152 Score:58.5 bits(140), Expect:7e-09, Method:Composition-based stats., Identities:43/145(30%), Positives:73/145(50%), Gaps:9/145(6%) Query 542 EIFLAKEGEGI-LPKREED--AGYDL-IC-PEEVTIEPGQVKCIPIELRLNLKKSQWA-M 595 +I ++ G+ I LP D AG DL +C E + + P Q +P + + + + A + Sbjct 8 KILDSRIGDTISLPAYATDGSAGLDLRVCISEPMQVAPQQTVLLPTGIAIYIADPKLAAV 67 Query 596 IATKSSMAAKGVFTQG---GIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKH 652 I +S + K G G+IDS YQG++++ +N ++ + G + AQL+ + Sbjct 68 ILPRSGLGHKNGIVLGNLVGLIDSDYQGELKISCWNRSQEHFTVNPGDRIAQLVFIPVVQ 127 Query 653 GKLEPWGESRKTERGEKGFGSTGMY 677 E E ++ RGE GFGS+G Y Sbjct 128 ASFEVVNEFTESSRGEGGFGSSGRY 152 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Legionella pneumophila str. Corby] Sequence ID: A5IEX1.1 Length: 152 Range 1: 8 to 152 Score:58.5 bits(140), Expect:8e-09, Method:Composition-based stats., Identities:43/145(30%), Positives:73/145(50%), Gaps:9/145(6%) Query 542 EIFLAKEGEGI-LPKREED--AGYDL-IC-PEEVTIEPGQVKCIPIELRLNLKKSQWA-M 595 +I ++ G+ I LP D AG DL +C E + + P Q +P + + + + A + Sbjct 8 KILDSRIGDTIPLPAYATDGSAGLDLRVCISEPMQVAPQQAVLLPTGIAIYIADPKLAAV 67 Query 596 IATKSSMAAKGVFTQG---GIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKH 652 I +S + K G G+IDS YQG++++ +N ++ + G + AQL+ + Sbjct 68 ILPRSGLGHKNGIVLGNLVGLIDSDYQGELKISCWNRSQEHFTVNPGDRIAQLVFIPVVQ 127 Query 653 GKLEPWGESRKTERGEKGFGSTGMY 677 E E ++ RGE GFGS+G Y Sbjct 128 ASFEVVNEFTESSRGEGGFGSSGRY 152 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Rhodoferax ferrireducens T118] Sequence ID: Q21V41.1 Length: 149 Range 1: 26 to 147 Score:58.2 bits(139), Expect:9e-09, Method:Composition-based stats., Identities:40/122(33%), Positives:63/122(51%), Gaps:6/122(4%) Query 560 AGYDL-ICPEE-VTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL C + +T+ P + +P + + LK ++A MI +S + K G G+ Sbjct 26 AGLDLRACLDAPLTLLPNAWQLVPTGIAIYLKDPKFAAMILPRSGLGHKHGIVLGNLVGL 85 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQ+ V +N + +A I + AQL+++ + E + RGE G+GS Sbjct 86 IDSDYQGQLMVSAWNRSDVAFTIEPMERIAQLVIVPVLQAQFNVVSEFPASARGEGGYGS 145 Query 674 TG 675 TG Sbjct 146 TG 147 >RecName: Full=Probable deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Schizosaccharomyces pombe 972h-] Sequence ID: Q9P6Q5.1 Length: 140 Range 1: 23 to 140 Score:57.8 bits(138), Expect:9e-09, Method:Composition-based stats., Identities:35/118(30%), Positives:61/118(51%), Gaps:1/118(0%) Query 560 AGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAK-GVFTQGGIIDSGY 618 AGYDL E + + +L + + + + +A +S +A+K + T G+ID+ Y Sbjct 23 AGYDLYAAAECIVPRRGKVLVDTDLAIAVPEGTYGRVAPRSGLASKHSIDTGAGVIDADY 82 Query 619 QGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGSTGM 676 +G ++V+++N + + I G + AQLIL + + T RG GFGSTG+ Sbjct 83 RGHVRVLLFNYSDVDFPIKVGDRIAQLILERIVNPPVILVESLEATVRGANGFGSTGV 140 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Pseudomonas protegens Pf-5] Sequence ID: Q4K3S2.1 Length: 151 Range 1: 28 to 151 Score:58.2 bits(139), Expect:1e-08, Method:Composition-based stats., Identities:40/124(32%), Positives:61/124(49%), Gaps:6/124(4%) Query 560 AGYDL--ICPEEVTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL + E+ +EPGQ IP L + + A +I +S + K G G+ Sbjct 28 AGLDLRAMLKEDTLLEPGQTLLIPTGLSVYIGDPGLAALILPRSGLGHKHGIVLGNLVGL 87 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQG++ V +N + A I G + AQL+L+ E +++RG GFG Sbjct 88 IDSDYQGELMVSCWNRGQTAFNIAVGERIAQLVLVPVVQAHFEVVEAFDESQRGAGGFGH 147 Query 674 TGMY 677 +G + Sbjct 148 SGSH 151 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Enterobacter sp. 638] Sequence ID: A4W509.1 Length: 152 Range 1: 29 to 150 Score:58.2 bits(139), Expect:1e-08, Method:Composition-based stats., Identities:40/122(33%), Positives:62/122(50%), Gaps:6/122(4%) Query 560 AGYDL-ICPEE-VTIEPGQVKCIPIELRLNLKK-SQWAMIATKSSMAAKGVFTQG---GI 613 AG DL C +E V + PG IP L +++ S A+I +S + K G G+ Sbjct 29 AGLDLRACLDEAVALAPGATTLIPTGLAIHVADPSLAAVILPRSGLGHKHGIVLGNLVGL 88 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQ+ V ++N + + I G + AQ++ + + + T+RGE GFG Sbjct 89 IDSDYQGQLMVSVWNRGQDSFTIEPGERIAQMVFVPVVQAEFNLVDDFDATDRGEGGFGH 148 Query 674 TG 675 +G Sbjct 149 SG 150 >RecName: Full=Gag-Pro polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp24; Contains: RecName: Full=Phosphorylated protein pp18; Contains: RecName: Full=p12; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease 17 kDa; Contains: RecName: Full=Protease 13 kDa; Contains: RecName: Full=G-patch peptide [Simian retrovirus 1] Sequence ID: P04024.2 Length: 912 Range 1: 647 to 778 Score:62.4 bits(150), Expect:1e-08, Method:Compositional matrix adjust., Identities:40/137(29%), Positives:69/137(50%), Gaps:6/137(4%) Query 560 AGYDLICPEEVTIEPGQ-VKCIPIELRLNLKKSQWAMIATKSSMAAKGVFTQGGIIDSGY 618 AG DL + P + + + L + + +I +SS+ KG+ G+ID+ Y Sbjct 647 AGLDLSSTSHTVLTPEMGPQALSTGIYGPLPPNTFGLILGRSSITIKGLQVYPGVIDNDY 706 Query 619 QGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGSTGMYW 678 G+I+++ N I V +PQG + AQLIL+ +E + ++ RG+ FGS+ +YW Sbjct 707 TGEIKIMAKAVNNI-VTVPQGNRIAQLILLP----LIETDNKVQQPYRGQGSFGSSDIYW 761 Query 679 IENIPLAEEDHTKWHQD 695 ++ I + T W D Sbjct 762 VQPITCQKPSLTLWLDD 778 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Sequence ID: B0BTZ3.1 Length: 151 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Sequence ID: B3H338.1 Length: 151 Range 1: 25 to 149 Score:57.8 bits(138), Expect:1e-08, Method:Composition-based stats., Identities:38/125(30%), Positives:59/125(47%), Gaps:6/125(4%) Query 557 EEDAGYDL--ICPEEVTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG-- 611 E AG DL + +T+ PGQ IP + + + A +I +S + K G Sbjct 25 EGSAGLDLRALTESALTVAPGQTVLIPTGISIYIADPNLAAVILPRSGLGHKNGIVLGNL 84 Query 612 -GIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKG 670 G+IDS YQG + V ++N + + G + AQL+ + + +TERGE G Sbjct 85 VGLIDSDYQGPLMVSLWNRSDKPFTVEVGDRIAQLVFVPVVQASFNIVNDFAQTERGEGG 144 Query 671 FGSTG 675 FG +G Sbjct 145 FGHSG 149 >RecName: Full=Enzymatic polyprotein; Includes: RecName: Full=Aspartic protease; Includes: RecName: Full=Endonuclease; Includes: RecName: Full=Reverse transcriptase [Cauliflower mosaic virus (STRAIN STRASBOURG)] Sequence ID: P03554.1 Length: 679 Range 1: 260 to 496 Score:62.0 bits(149), Expect:1e-08, Method:Compositional matrix adjust., Identities:70/256(27%), Positives:114/256(44%), Gaps:28/256(10%) Query 23 EEKLKGLTEIID-KLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRELNKQTEDL 81 EE K + E++D K+++ K P + N +K+ GK RM+++++ +NK T Sbjct 260 EEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEA---EKRRGKKRMVVNYKAMNKAT--- 313 Query 82 TEAQLGLPHPGGL----QKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPCKR 137 LP+ L + KK + D ++ + L + R T FT P Sbjct 314 VGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTC-------PQGH 366 Query 138 YYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHREIVK 197 Y W V+P G K +PS++Q M E + + +Y+DDI + S+ E + H V Sbjct 367 YEWNVVPFGLKQAPSIFQRHMDEAFRVFRK-----FCCVYVDDILVFSNNE-EDHLLHVA 420 Query 198 DLANYIAQYGFTLPEEKRQKGYPA-KWLGFELHPQTWKFQKHTLPELTKGTITL---NKL 253 + Q+G L ++K Q +LG E+ T K Q H L + K TL +L Sbjct 421 MILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQL 480 Query 254 QKLVGELVWRQSIIGK 269 Q+ +G L + I K Sbjct 481 QRFLGILTYASDYIPK 496 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Neisseria meningitidis 053442] Sequence ID: A9M439.1 Length: 150 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Neisseria gonorrhoeae FA 1090] Sequence ID: Q5F9E0.1 Length: 150 Range 1: 24 to 150 Score:57.8 bits(138), Expect:1e-08, Method:Composition-based stats., Identities:38/127(30%), Positives:63/127(49%), Gaps:6/127(4%) Query 557 EEDAGYDL--ICPEEVTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG-- 611 E AG DL EEV ++PG+ +P L + L +A ++ +S + K G Sbjct 24 EGSAGLDLRACLDEEVVLQPGETFLVPTGLAIYLANPAYAAVLLPRSGLGHKHGIVLGNL 83 Query 612 -GIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKG 670 G+IDS YQG+++V ++N + + AQ++++ + E + RGE G Sbjct 84 VGLIDSDYQGELKVSLWNRGSEPFAVKPFERIAQMVIVPVVQAGFKRVEEFVGSSRGEGG 143 Query 671 FGSTGMY 677 FGSTG + Sbjct 144 FGSTGSH 150 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Bdellovibrio bacteriovorus HD100] Sequence ID: P61906.1 Length: 149 Range 1: 39 to 147 Score:57.8 bits(138), Expect:1e-08, Method:Composition-based stats., Identities:37/109(34%), Positives:51/109(46%), Gaps:3/109(2%) Query 570 VTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAKG---VFTQGGIIDSGYQGQIQVIM 626 V + PG+ IP L + +S AAK V G ID+ Y+G++++I+ Sbjct 39 VVLNPGERAMIPTGLSFEIPLGYEIQARPRSGWAAKSGLTVLNTPGTIDADYRGEVKIIV 98 Query 627 YNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGSTG 675 N AV I + AQL+L + E E TERG GFGSTG Sbjct 99 INLGNEAVTINDQERCAQLVLAPVIQAQFELVNELSDTERGAGGFGSTG 147 >RecName: Full=Enzymatic polyprotein; Includes: RecName: Full=Aspartic protease; Includes: RecName: Full=Endonuclease; Includes: RecName: Full=Reverse transcriptase [Cauliflower mosaic virus (STRAIN BBC)] Sequence ID: Q02964.1 Length: 679 Range 1: 260 to 496 Score:62.0 bits(149), Expect:1e-08, Method:Compositional matrix adjust., Identities:71/256(28%), Positives:117/256(45%), Gaps:28/256(10%) Query 23 EEKLKGLTEIID-KLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRELNKQTEDL 81 EE K + E++D K+++ K P + N +K+ GK RM+++++ +NK T + Sbjct 260 EEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEA---EKRRGKKRMVVNYKAMNKAT--I 314 Query 82 TEAQLGLPHPGGL----QKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPCKR 137 +A LP+ L + KK + D ++ + L + R T FT P Sbjct 315 GDA-YNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTC-------PQGH 366 Query 138 YYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHREIVK 197 Y W V+P G K +PS++Q M E + + +Y+DDI + S+ E + H V Sbjct 367 YEWNVVPFGLKQAPSIFQRHMDEAFRVFRK-----FCCVYVDDILVFSNNE-EDHLLHVA 420 Query 198 DLANYIAQYGFTLPEEKRQKGYPA-KWLGFELHPQTWKFQKHTLPELTKGTITL---NKL 253 + Q+G L ++K Q +LG E+ T K Q H L + K TL +L Sbjct 421 MILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQL 480 Query 254 QKLVGELVWRQSIIGK 269 Q+ +G L + I K Sbjct 481 QRFLGILTYASDYIPK 496 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [[Mannheimia] succiniciproducens MBEL55E] Sequence ID: Q65R66.1 Length: 151 Range 1: 28 to 149 Score:57.8 bits(138), Expect:1e-08, Method:Composition-based stats., Identities:40/122(33%), Positives:60/122(49%), Gaps:6/122(4%) Query 560 AGYDL--ICPEEVTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL + E ++PG+ K IP L + + A +I +S + K G G+ Sbjct 28 AGLDLRALIEEGFDLQPGETKLIPTGLSIYIADPNLAAVILPRSGLGHKHGIVLGNLVGL 87 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQG + V M+N + I G + AQL+ + + + +TERGE GFG Sbjct 88 IDSDYQGPLMVSMWNRGEQPFRIEVGDRIAQLVFVPVVQAEFNIVTDFTQTERGEGGFGH 147 Query 674 TG 675 +G Sbjct 148 SG 149 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Neisseria meningitidis MC58] Sequence ID: Q9JZU7.1 Length: 150 Range 1: 24 to 150 Score:57.8 bits(138), Expect:1e-08, Method:Composition-based stats., Identities:38/127(30%), Positives:64/127(50%), Gaps:6/127(4%) Query 557 EEDAGYDL--ICPEEVTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG-- 611 E AG DL EEV ++PG+ +P L + L +A ++ +S + K G Sbjct 24 EGSAGLDLRACLDEEVVLQPGETFLVPTGLAIYLANPAYAAVLLPRSGLGHKHGIVLGNL 83 Query 612 -GIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKG 670 G+IDS YQG+++V ++N + + + AQ++++ + E + RGE G Sbjct 84 VGLIDSDYQGELKVSLWNRSSEPFTVKPFERIAQMVVVPIVQAGFKRVEEFVGSSRGEGG 143 Query 671 FGSTGMY 677 FGSTG + Sbjct 144 FGSTGSH 150 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Neisseria gonorrhoeae NCCP11945] Sequence ID: B4RKH1.1 Length: 150 Range 1: 24 to 150 Score:57.8 bits(138), Expect:1e-08, Method:Composition-based stats., Identities:38/127(30%), Positives:63/127(49%), Gaps:6/127(4%) Query 557 EEDAGYDL--ICPEEVTIEPGQVKCIPIELRLNLKKSQW-AMIATKSSMAAKGVFTQG-- 611 E AG DL EEV ++PG+ +P L + L + A++ +S + K G Sbjct 24 EGSAGLDLRACLDEEVVLQPGETFLVPTGLAIYLANPAYTAVLLPRSGLGHKHGIVLGNL 83 Query 612 -GIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKG 670 G+IDS YQG+++V ++N + + AQ++++ + E + RGE G Sbjct 84 VGLIDSDYQGELKVSLWNRGSEPFTVKPFERIAQMVIVPVVQAGFKRVEEFVGSSRGEGG 143 Query 671 FGSTGMY 677 FGSTG + Sbjct 144 FGSTGSH 150 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Legionella pneumophila str. Paris] Sequence ID: Q5X242.1 Length: 152 Range 1: 8 to 152 Score:57.8 bits(138), Expect:1e-08, Method:Composition-based stats., Identities:43/145(30%), Positives:73/145(50%), Gaps:9/145(6%) Query 542 EIFLAKEGEGI-LPKREED--AGYDL-IC-PEEVTIEPGQVKCIPIELRLNLKKSQWA-M 595 +I ++ G+ I LP D AG DL +C E + + P Q +P + + + + A + Sbjct 8 KILDSRIGDTIPLPAYATDGSAGLDLRVCISEPMQVAPQQTVLLPTGIAIYIADPKLAAV 67 Query 596 IATKSSMAAKGVFTQG---GIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKH 652 I +S + K G G+IDS YQG++++ +N ++ + G + AQL+ + Sbjct 68 ILPRSGLGHKNGIVLGNLVGLIDSDYQGELKISCWNRSQEHFTVNPGDRIAQLVFIPVVQ 127 Query 653 GKLEPWGESRKTERGEKGFGSTGMY 677 E E ++ RGE GFGS+G Y Sbjct 128 TSFEVVNEFTESSRGEGGFGSSGRY 152 >RecName: Full=Enzymatic polyprotein; Includes: RecName: Full=Aspartic protease; Includes: RecName: Full=Endonuclease; Includes: RecName: Full=Reverse transcriptase [Cauliflower mosaic virus (STRAIN CM-1841)] Sequence ID: P03555.1 Length: 679 Range 1: 260 to 496 Score:61.6 bits(148), Expect:1e-08, Method:Compositional matrix adjust., Identities:71/256(28%), Positives:117/256(45%), Gaps:28/256(10%) Query 23 EEKLKGLTEIID-KLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRELNKQTEDL 81 EE K + E++D K+++ K P + N +K+ GK RM+++++ +NK T + Sbjct 260 EEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEA---EKRRGKKRMVVNYKAMNKAT--I 314 Query 82 TEAQLGLPHPGGL----QKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPCKR 137 +A LP+ L + KK + D ++ + L + R T FT P Sbjct 315 GDA-YNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTC-------PQGH 366 Query 138 YYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHREIVK 197 Y W V+P G K +PS++Q M E + + +Y+DDI + S+ E + H V Sbjct 367 YEWNVVPFGLKQAPSIFQRHMDEAFRVFRK-----FCCVYVDDILVFSNNE-EDHLLHVA 420 Query 198 DLANYIAQYGFTLPEEKRQKGYPA-KWLGFELHPQTWKFQKHTLPELTKGTITL---NKL 253 + Q+G L ++K Q +LG E+ T K Q H L + K TL +L Sbjct 421 MILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQL 480 Query 254 QKLVGELVWRQSIIGK 269 Q+ +G L + I K Sbjct 481 QRFLGILTYASDYIPK 496 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Corynebacterium diphtheriae NCTC 13129] Sequence ID: P61907.1 Length: 152 Range 1: 22 to 151 Score:57.8 bits(138), Expect:1e-08, Method:Composition-based stats., Identities:42/130(32%), Positives:64/130(49%), Gaps:6/130(4%) Query 553 LPKREE--DAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAK---GV 607 LP R+ DAG DL E VTIEPG + + + L +I +S A K + Sbjct 22 LPVRKHRGDAGADLFSAESVTIEPGHRILVGTGIAIALPIGTVGLIHPRSGRALKEGLSI 81 Query 608 FTQGGIIDSGYQGQIQVIMYNSNKIAVV-IPQGRKFAQLILMDKKHGKLEPWGESRKTER 666 G ID+ Y+G+I+V + N + + I +G + AQL++ + +TER Sbjct 82 VNTPGTIDADYRGEIKVCLINLDPTTPIRIERGERIAQLLVQKVELVDFCEVETLSETER 141 Query 667 GEKGFGSTGM 676 G G+GSTG+ Sbjct 142 GVNGYGSTGV 151 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Nitrosomonas europaea ATCC 19718] Sequence ID: Q82UM1.1 Length: 149 Range 1: 26 to 147 Score:57.4 bits(137), Expect:1e-08, Method:Composition-based stats., Identities:39/122(32%), Positives:60/122(49%), Gaps:6/122(4%) Query 560 AGYDL--ICPEEVTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL E + I PG+ IP + ++L +A M+ +S + K G G+ Sbjct 26 AGLDLRACIDERMEIHPGETLLIPSGIAIHLADPGFAAMVLPRSGLGHKHGIVLGNLVGL 85 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQI V +N + + + AQL+++ + ++RGE+GFGS Sbjct 86 IDSDYQGQILVSCWNRGQAGFTLDPMERIAQLVIVPVVQAGFNVVENFQPSQRGEQGFGS 145 Query 674 TG 675 TG Sbjct 146 TG 147 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Klebsiella pneumoniae 342] Sequence ID: B5XTG3.1 Length: 152 Range 1: 29 to 150 Score:57.8 bits(138), Expect:1e-08, Method:Composition-based stats., Identities:39/122(32%), Positives:63/122(51%), Gaps:6/122(4%) Query 560 AGYDL-ICPEE-VTIEPGQVKCIPIELRLNLKK-SQWAMIATKSSMAAKGVFTQG---GI 613 AG DL C ++ V + PG +P L +++ S A+I +S + K G G+ Sbjct 29 AGLDLRACLDDAVELAPGATTLLPTGLAIHIADPSLAAVILPRSGLGHKHGVVLGNLVGL 88 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQ+ V ++N + + +I G + AQ++ + + E T+RGE GFG Sbjct 89 IDSDYQGQLMVSVWNRGQQSFIIEPGERIAQMVFVPVVQAEFNLVEEFDATDRGEGGFGH 148 Query 674 TG 675 +G Sbjct 149 SG 150 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Pseudomonas syringae pv. syringae B728a] Sequence ID: Q4ZZX9.1 Length: 151 Range 1: 28 to 151 Score:57.4 bits(137), Expect:2e-08, Method:Composition-based stats., Identities:40/124(32%), Positives:60/124(48%), Gaps:6/124(4%) Query 560 AGYDL--ICPEEVTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL + E+ +EPGQ IP L + + A +I +S + K G G+ Sbjct 28 AGLDLRAMLKEDTLLEPGQTLLIPTGLSIYIGDPGLAALILPRSGLGHKHGIVLGNLVGL 87 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQG++ V +N A I G + AQL+L+ E +++RG GFG Sbjct 88 IDSDYQGELMVSCWNRGHTAFNIAVGERIAQLVLVPVVQAHFELVEAFDESQRGAGGFGH 147 Query 674 TGMY 677 +G + Sbjct 148 SGSH 151 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Dictyoglomus thermophilum H-6-12] Sequence ID: B5YDD8.1 Length: 147 Range 1: 48 to 147 Score:57.4 bits(137), Expect:2e-08, Method:Composition-based stats., Identities:33/100(33%), Positives:54/100(54%), Gaps:3/100(3%) Query 580 IPIELRLNLKKSQWAMIATKSSMAAK---GVFTQGGIIDSGYQGQIQVIMYNSNKIAVVI 636 IP +++ L + A + +S +AAK + G+IDS Y+G+I V + N + Sbjct 48 IPTGIKIALPEGYLAFVLPRSGLAAKEGISILNTPGLIDSDYRGEIFVNLINFSNKTFYG 107 Query 637 PQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGSTGM 676 +G + AQL+++ H E + +TERGE G GSTG+ Sbjct 108 KRGMRIAQLLVLQYAHVMWEEVSQLPQTERGEGGLGSTGL 147 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Nitrosospira multiformis ATCC 25196] Sequence ID: Q2Y742.1 Length: 149 Range 1: 26 to 149 Score:57.4 bits(137), Expect:2e-08, Method:Composition-based stats., Identities:41/124(33%), Positives:64/124(51%), Gaps:6/124(4%) Query 560 AGYDL-ICPEEV-TIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL C E V TI+PG+ IP + ++L A ++ +S + K G G+ Sbjct 26 AGLDLRACIEHVMTIQPGEAHLIPTGIAIHLSDPGLAALVLPRSGLGHKHGIVMGNLVGL 85 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQI V +N + ++ + AQL+++ + + ++ERG GFGS Sbjct 86 IDSDYQGQIFVSCWNRGQAPFLLNPLERIAQLVVVPVVQVGFKVVDDFEQSERGANGFGS 145 Query 674 TGMY 677 TG + Sbjct 146 TGKH 149 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Sequence ID: C4K8Y6.1 Length: 151 Range 1: 28 to 149 Score:57.4 bits(137), Expect:2e-08, Method:Composition-based stats., Identities:36/122(30%), Positives:64/122(52%), Gaps:6/122(4%) Query 560 AGYDL-ICPEEVT-IEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL +C + + PG+ + +P L +++ A MI +S + K G G+ Sbjct 28 AGLDLRVCTQAPQHLSPGETRLLPTGLAVHIADPHLAAMILPRSGLGHKNGIVLGNLVGL 87 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQG++ + ++N ++I +I G + AQ++ + +L E ++RG GFG Sbjct 88 IDSDYQGELMLSVWNRSQIDFLINPGDRLAQMVFVPVVQVELNIVSEFTSSQRGSGGFGH 147 Query 674 TG 675 +G Sbjct 148 SG 149 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Thiobacillus denitrificans ATCC 25259] Sequence ID: Q3SFR7.1 Length: 146 Range 1: 23 to 144 Score:57.0 bits(136), Expect:2e-08, Method:Composition-based stats., Identities:38/122(31%), Positives:63/122(51%), Gaps:6/122(4%) Query 560 AGYDL-ICPEE-VTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL C + +T+ PG+ + +P + ++L +A +I +S + K G G+ Sbjct 23 AGLDLRACIDAPITLAPGETRLVPTGMAIHLADPGYAALILPRSGLGHKHGIVLGNLVGL 82 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQ+ V +N ++ + + + AQL+++ + T RGE GFGS Sbjct 83 IDSDYQGQLMVSAWNRSEQSFELVPLERLAQLVIVPVVQARFNIVEAFETTARGEGGFGS 142 Query 674 TG 675 TG Sbjct 143 TG 144 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Acinetobacter baylyi ADP1] Sequence ID: Q6FDR0.1 Length: 150 Range 1: 26 to 148 Score:57.0 bits(136), Expect:2e-08, Method:Compositional matrix adjust., Identities:39/123(32%), Positives:62/123(50%), Gaps:6/123(4%) Query 559 DAGYDL-ICPEE-VTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---G 612 AG DL C +E + IEPGQ I + + + + +A +I +S + K G G Sbjct 26 SAGLDLRACLDEAIQIEPGQTVLIKTGMAIYIHDTNFAGLILPRSGLGHKHGIVLGNLVG 85 Query 613 IIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFG 672 +IDS YQG++ + ++N + + G + AQ +L+ + E E T+RG GFG Sbjct 86 LIDSDYQGELMISVWNRGQNTFTLEPGERLAQYVLVPVIQAEFEQVEEFVATDRGAGGFG 145 Query 673 STG 675 TG Sbjct 146 HTG 148 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Eremothecium gossypii ATCC 10895] Sequence ID: Q74ZF0.1 Length: 153 Range 1: 35 to 152 Score:57.0 bits(136), Expect:3e-08, Method:Composition-based stats., Identities:35/119(29%), Positives:64/119(53%), Gaps:4/119(3%) Query 560 AGYDLICPEEVTIEPGQVK-CIPIELRLNLKKSQWAMIATKSSMAAK-GVFTQGGIIDSG 617 AGYD+ ++ I PG+ + + ++ + + IA +S +A K G+ T G++D Sbjct 35 AGYDIYASQDCVI-PGRGQGLVATDVSFTVPVGTYGRIAPRSGLAVKHGIQTGAGVVDRD 93 Query 618 YQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGES-RKTERGEKGFGSTG 675 Y G+++++++N + + +G + AQL+L ES ++ RGE GFGSTG Sbjct 94 YTGEVKIVLFNHSDRDYAVKRGDRVAQLVLERIVDDAEVVVVESLDESSRGEGGFGSTG 152 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Pseudomonas putida KT2440] Sequence ID: Q88C95.1 Length: 151 Range 1: 28 to 151 Score:57.0 bits(136), Expect:3e-08, Method:Composition-based stats., Identities:39/124(31%), Positives:59/124(47%), Gaps:6/124(4%) Query 560 AGYDL--ICPEEVTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL + E+ +EPGQ IP L + + A +I +S + K G G+ Sbjct 28 AGLDLRALLKEDTILEPGQTVLIPTGLSIYIGDPGLAAVILPRSGLGHKHGIVLGNLVGL 87 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQG++ V +N I G + AQL+L+ E +++RG GFG Sbjct 88 IDSDYQGELMVSCWNRGNTPFTIAVGERIAQLVLVPVVQAHFEIVEAFDESQRGAGGFGH 147 Query 674 TGMY 677 +G + Sbjct 148 SGSH 151 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Photorhabdus laumondii subsp. laumondii TTO1] Sequence ID: Q7MAX3.1 Length: 152 Range 1: 29 to 150 Score:57.0 bits(136), Expect:3e-08, Method:Composition-based stats., Identities:39/122(32%), Positives:61/122(50%), Gaps:6/122(4%) Query 560 AGYDL-ICPEE-VTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL C + V + PGQ + +P L +++ Q A +I +S + K G G+ Sbjct 29 AGLDLRACLDNAVELAPGQTELLPTGLAIHIGDEQLAAVILPRSGLGHKHGVVLGNLVGL 88 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQ+ V ++N A I G + AQ++ + + + +ERG GFG Sbjct 89 IDSDYQGQLMVSVWNRGDKAFTIQPGERIAQIVFVPVVQAEFNLVEDFETSERGSGGFGH 148 Query 674 TG 675 +G Sbjct 149 SG 150 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Aquifex aeolicus VF5] Sequence ID: O66592.1 Length: 150 Range 1: 27 to 148 Score:56.6 bits(135), Expect:3e-08, Method:Compositional matrix adjust., Identities:41/122(34%), Positives:65/122(53%), Gaps:5/122(4%) Query 559 DAGYDLICPEE--VTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMA-AKG--VFTQGGI 613 +G DL E + I+P + IP L L + + + +S +A KG V G Sbjct 27 SSGLDLRAAIEKPLKIKPFERVLIPTGLILEIPEGYEGQVRPRSGLAWKKGLTVLNAPGT 86 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 ID+ Y+G+++VI+ N VVI +G + AQL++ + ++ E +T+RGE GFGS Sbjct 87 IDADYRGEVKVILVNLGNEEVVIERGERIAQLVIAPVQRVEVVEVEEVSQTQRGEGGFGS 146 Query 674 TG 675 TG Sbjct 147 TG 148 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Proteus mirabilis HI4320] Sequence ID: B4F0W6.1 Length: 151 Range 1: 28 to 149 Score:56.6 bits(135), Expect:3e-08, Method:Composition-based stats., Identities:38/122(31%), Positives:63/122(51%), Gaps:6/122(4%) Query 560 AGYDL-ICPEE-VTIEPGQVKCIPIELRLNL-KKSQWAMIATKSSMAAKGVFTQG---GI 613 AG DL C + + + PGQ + +P L +++ + AM+ +S + K G G+ Sbjct 28 AGLDLRACLDAPLVLAPGQTELLPTGLAVHIADEGLAAMVLPRSGLGHKHGVVLGNLVGL 87 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQ+ V ++N + A I G + AQ++++ + + TERG GFG Sbjct 88 IDSDYQGQLMVSVWNRGQQAFTIEPGERIAQMVIVPVVQAEFNIVEDFTATERGTGGFGH 147 Query 674 TG 675 +G Sbjct 148 SG 149 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Cronobacter sakazakii ATCC BAA-894] Sequence ID: A7MQ93.1 Length: 152 Range 1: 29 to 150 Score:56.6 bits(135), Expect:3e-08, Method:Composition-based stats., Identities:38/122(31%), Positives:60/122(49%), Gaps:6/122(4%) Query 560 AGYDL--ICPEEVTIEPGQVKCIPIELRLNLKK-SQWAMIATKSSMAAKGVFTQG---GI 613 AG DL E V + PG +P L +++ S A+I +S + K G G+ Sbjct 29 AGLDLRACLDESVELTPGATTLLPTGLAIHIADPSLAAVILPRSGLGHKHGVVLGNLVGL 88 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQ+ V ++N + + I G + AQ++ + + + T+RGE GFG Sbjct 89 IDSDYQGQLMVSVWNRGQQSFTIEPGERIAQMVFVPVVQAEFNLVEDFTATDRGEGGFGH 148 Query 674 TG 675 +G Sbjct 149 SG 150 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Escherichia coli O139:H28 str. E24377A] Sequence ID: A7ZTJ1.1 Length: 151 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Escherichia coli HS] Sequence ID: A8A6A2.1 Length: 151 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Shigella boydii CDC 3083-94] Sequence ID: B2TTV4.1 Length: 151 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Escherichia coli 55989] Sequence ID: B7L763.1 Length: 151 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Escherichia fergusonii ATCC 35469] Sequence ID: B7LVK1.1 Length: 151 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Escherichia coli IAI1] Sequence ID: B7M4C5.1 Length: 151 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Escherichia coli UMN026] Sequence ID: B7NEU4.1 Length: 151 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Escherichia coli O127:H6 str. E2348/69] Sequence ID: B7UM46.1 Length: 151 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Escherichia coli CFT073] Sequence ID: P64006.1 Length: 151 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Shigella boydii Sb227] Sequence ID: Q31UY6.1 Length: 151 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Shigella dysenteriae Sd197] Sequence ID: Q329L7.1 Length: 151 Range 1: 28 to 149 Score:56.6 bits(135), Expect:3e-08, Method:Composition-based stats., Identities:38/122(31%), Positives:62/122(50%), Gaps:6/122(4%) Query 560 AGYDL-ICPEE-VTIEPGQVKCIPIELRLNLKK-SQWAMIATKSSMAAKGVFTQG---GI 613 AG DL C ++ V + PG +P L +++ S AM+ +S + K G G+ Sbjct 28 AGLDLRACLDDAVELAPGDTTLVPTGLAIHIADPSLAAMMLPRSGLGHKHGIVLGNLVGL 87 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQ+ + ++N + + I G + AQ+I + + + T+RGE GFG Sbjct 88 IDSDYQGQLMISVWNRGQDSFTIQPGERIAQMIFVPVVQAEFNLVEDFDATDRGEGGFGH 147 Query 674 TG 675 +G Sbjct 148 SG 149 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Shigella flexneri 5 str. 8401] Sequence ID: Q0SYG7.1 Length: 151 Range 1: 28 to 149 Score:56.6 bits(135), Expect:3e-08, Method:Composition-based stats., Identities:38/122(31%), Positives:62/122(50%), Gaps:6/122(4%) Query 560 AGYDL-ICPEE-VTIEPGQVKCIPIELRLNLKK-SQWAMIATKSSMAAKGVFTQG---GI 613 AG DL C ++ V + PG +P L +++ S AM+ +S + K G G+ Sbjct 28 AGLDLRACLDDAVELAPGDTTLVPTGLAIHIADPSLAAMMLPRSGLGHKHGIVLGNLVGL 87 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQ+ + ++N + + I G + AQ+I + + + T+RGE GFG Sbjct 88 IDSDYQGQLMISVWNRGQDSFTIQPGERIAQMIFVPVVQAEFNLVEDFDATDRGEGGFGH 147 Query 674 TG 675 +G Sbjct 148 SG 149 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Citrobacter koseri ATCC BAA-895] Sequence ID: A8ARM7.1 Length: 152 Range 1: 29 to 150 Score:56.6 bits(135), Expect:3e-08, Method:Composition-based stats., Identities:38/122(31%), Positives:62/122(50%), Gaps:6/122(4%) Query 560 AGYDL-ICPEE-VTIEPGQVKCIPIELRLNLKK-SQWAMIATKSSMAAKGVFTQG---GI 613 AG DL C ++ V + PG +P L +++ S A++ +S + K G G+ Sbjct 29 AGLDLRACLDDAVELAPGATTLVPTGLAIHIADPSLAAVMLPRSGLGHKHGIVLGNLVGL 88 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQ+ V ++N + + I G + AQ++ + + E T+RGE GFG Sbjct 89 IDSDYQGQLMVSIWNRGQDSFTIEPGERIAQMVFVPVVQAEFNLVEEFEATDRGEGGFGH 148 Query 674 TG 675 +G Sbjct 149 SG 150 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Escherichia coli ATCC 8739] Sequence ID: B1IYW0.1 Length: 152 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Escherichia coli SMS-3-5] Sequence ID: B1LK77.1 Length: 152 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Escherichia coli O157:H7 str. EC4115] Sequence ID: B5YWD8.1 Length: 152 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Escherichia coli SE11] Sequence ID: B6I3L7.1 Length: 152 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Escherichia coli O157:H7] Sequence ID: P64007.2 Length: 152 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Escherichia coli 536] Sequence ID: Q0TBG9.1 Length: 152 Range 1: 29 to 150 Score:56.6 bits(135), Expect:3e-08, Method:Composition-based stats., Identities:38/122(31%), Positives:62/122(50%), Gaps:6/122(4%) Query 560 AGYDL-ICPEE-VTIEPGQVKCIPIELRLNLKK-SQWAMIATKSSMAAKGVFTQG---GI 613 AG DL C ++ V + PG +P L +++ S AM+ +S + K G G+ Sbjct 29 AGLDLRACLDDAVELAPGDTTLVPTGLAIHIADPSLAAMMLPRSGLGHKHGIVLGNLVGL 88 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQ+ + ++N + + I G + AQ+I + + + T+RGE GFG Sbjct 89 IDSDYQGQLMISVWNRGQDSFTIQPGERIAQMIFVPVVQAEFNLVEDFDATDRGEGGFGH 148 Query 674 TG 675 +G Sbjct 149 SG 150 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Shigella flexneri] Sequence ID: Q83PN3.1 Length: 152 Range 1: 29 to 150 Score:56.6 bits(135), Expect:3e-08, Method:Composition-based stats., Identities:38/122(31%), Positives:62/122(50%), Gaps:6/122(4%) Query 560 AGYDL-ICPEE-VTIEPGQVKCIPIELRLNLKK-SQWAMIATKSSMAAKGVFTQG---GI 613 AG DL C ++ V + PG +P L +++ S AM+ +S + K G G+ Sbjct 29 AGLDLRACLDDAVELAPGDTTLVPTGLAIHIADPSLAAMMLPRSGLGHKHGIVLGNLVGL 88 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQ+ + ++N + + I G + AQ+I + + + T+RGE GFG Sbjct 89 IDSDYQGQLMISVWNRGQDSFTIQPGERIAQMIFVPVVQAEFNLVEDFDATDRGEGGFGH 148 Query 674 TG 675 +G Sbjct 149 SG 150 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Leptothrix cholodnii SP-6] Sequence ID: B1Y839.1 Length: 150 Range 1: 27 to 148 Score:56.6 bits(135), Expect:3e-08, Method:Composition-based stats., Identities:38/122(31%), Positives:60/122(49%), Gaps:6/122(4%) Query 560 AGYDLICPEEVTIE--PGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL ++ +E PGQ IP + +++ A +I +S + K G G+ Sbjct 27 AGLDLRACIDLPLEIAPGQTTLIPTGIAIHIADPGLAAIILPRSGLGHKHGIVLGNLVGL 86 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQ+ V +N +A + + AQL+++ + E ++RG GFGS Sbjct 87 IDSDYQGQLMVSCWNRGSVAYAVQPLERIAQLVIVPVVQAQFRQVDEFEASDRGVAGFGS 146 Query 674 TG 675 TG Sbjct 147 TG 148 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Polynucleobacter asymbioticus QLW-P1DMWA-1] Sequence ID: A4SZP2.1 Length: 149 Range 1: 26 to 147 Score:56.6 bits(135), Expect:3e-08, Method:Composition-based stats., Identities:41/122(34%), Positives:63/122(51%), Gaps:6/122(4%) Query 560 AGYDL-ICPEE-VTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL C +E + I PGQ +P L + ++ ++A I +S + K G G+ Sbjct 26 AGLDLRACIDEAIEIVPGQTVLVPTGLAIYVEDPRYAAFILPRSGLGHKHGIVLGNLVGL 85 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQ+ V +N + + AQL++M + +L+ E ++ RG GFGS Sbjct 86 IDSDYQGQLMVSTWNRGSNPFKLEPMERLAQLVVMPIQQVELKVVEEFTESSRGAGGFGS 145 Query 674 TG 675 TG Sbjct 146 TG 147 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Corynebacterium jeikeium K411] Sequence ID: Q4JVB1.1 Length: 155 Range 1: 23 to 155 Score:56.6 bits(135), Expect:3e-08, Method:Composition-based stats., Identities:39/133(29%), Positives:69/133(51%), Gaps:9/133(6%) Query 553 LPKREE--DAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAK---GV 607 LP+R DAG DL ++VTI PG + + + + L ++ +S +A K + Sbjct 23 LPRRAHPTDAGIDLYTAQDVTIAPGCRELVGTGIAIALPVGTVGLVHPRSGLALKKGLSI 82 Query 608 FTQGGIIDSGYQGQIQVIMYNSN-KIAVVIPQGRKFAQLILMDKKHGKLEPWGESRK--- 663 G ID+ Y+G+I+V + N + + + + +G + AQL++ + +E + Sbjct 83 VNAPGTIDADYRGEIKVCLINLDPEEPIELARGERIAQLLVQEVSLCDVEEVNSVEELGV 142 Query 664 TERGEKGFGSTGM 676 T RGE G+GSTG+ Sbjct 143 TVRGESGYGSTGV 155 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821] Sequence ID: Q9X3X5.3 Length: 146 Range 1: 24 to 146 Score:56.2 bits(134), Expect:3e-08, Method:Composition-based stats., Identities:36/123(29%), Positives:60/123(48%), Gaps:3/123(2%) Query 557 EEDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAK-GVFTQG--GI 613 E AG D++ E+V ++P Q + + + + +S +A K G+ G Sbjct 24 EGAAGMDVVSAEDVILQPMQRYPVKTGFAVAIPNGYEIQVRARSGLALKHGIACPNAPGT 83 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS Y+G++++++ N A I +G + AQLIL + T+RG GFGS Sbjct 84 IDSDYRGEVKILLINLGSEAFEIKRGDRIAQLILASVTQAVFCEVTDLDDTQRGHNGFGS 143 Query 674 TGM 676 TG+ Sbjct 144 TGI 146 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Yersinia pseudotuberculosis IP 31758] Sequence ID: A7FCT2.1 Length: 151 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Yersinia pestis Angola] Sequence ID: A9R672.1 Length: 151 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Yersinia pseudotuberculosis IP 32953] Sequence ID: Q66GD8.1 Length: 151 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Yersinia pestis] Sequence ID: Q8ZJP5.1 Length: 151 Range 1: 25 to 149 Score:56.6 bits(135), Expect:3e-08, Method:Composition-based stats., Identities:39/125(31%), Positives:62/125(49%), Gaps:6/125(4%) Query 557 EEDAGYDL-ICPEE-VTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG-- 611 E AG DL C + V ++PGQ +P L +++ S A +I +S + K G Sbjct 25 EGSAGLDLRACLDHAVELQPGQTTLLPTGLAIHIGDSALAAVILPRSGLGHKHGIVLGNL 84 Query 612 -GIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKG 670 G+IDS YQGQ+ V ++N + I G + AQ++ + + + +ERG G Sbjct 85 VGLIDSDYQGQLMVSVWNRGQQPFTIEPGERIAQMVFVPVVQAEFNLVEDFTDSERGTGG 144 Query 671 FGSTG 675 FG +G Sbjct 145 FGHSG 149 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Escherichia coli IAI39] Sequence ID: B7NQ01.1 Length: 151 Range 1: 28 to 149 Score:56.6 bits(135), Expect:4e-08, Method:Composition-based stats., Identities:38/122(31%), Positives:62/122(50%), Gaps:6/122(4%) Query 560 AGYDL-ICPEE-VTIEPGQVKCIPIELRLNLKK-SQWAMIATKSSMAAKGVFTQG---GI 613 AG DL C ++ V + PG +P L +++ S AM+ +S + K G G+ Sbjct 28 AGLDLRACLDDAVELAPGDTTLVPTGLAIHIADPSLAAMMLPRSGLGHKHGIVLGNLVGL 87 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQ+ + ++N + + I G + AQ+I + + + T+RGE GFG Sbjct 88 IDSDYQGQLMISVWNRGQDSFTIQPGERIAQIIFVPVVQAEFNLVEDFDATDRGEGGFGH 147 Query 674 TG 675 +G Sbjct 148 SG 149 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Burkholderia mallei SAVP1] Sequence ID: A1V6V5.1 Length: 148 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Burkholderia mallei NCTC 10229] Sequence ID: A2S504.1 Length: 148 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Burkholderia mallei NCTC 10247] Sequence ID: A3MN10.1 Length: 148 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Burkholderia pseudomallei 668] Sequence ID: A3N6P4.1 Length: 148 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Burkholderia pseudomallei 1106a] Sequence ID: A3NSC8.1 Length: 148 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Burkholderia pseudomallei 1710b] Sequence ID: Q3JV72.1 Length: 148 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Burkholderia mallei ATCC 23344] Sequence ID: Q62HL1.1 Length: 148 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Burkholderia pseudomallei K96243] Sequence ID: Q63WI6.1 Length: 148 Range 1: 16 to 146 Score:56.2 bits(134), Expect:4e-08, Method:Composition-based stats., Identities:40/131(31%), Positives:65/131(49%), Gaps:8/131(6%) Query 553 LPKREE--DAGYDL-ICPEE-VTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGV 607 LPK AG DL C + VT++PG +P L ++L +A +I +S + K Sbjct 16 LPKYATTGSAGLDLRACLDAPVTLKPGDTALVPTGLAIHLADPGYAALILPRSGLGHKHG 75 Query 608 FTQG---GIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKT 664 G G+IDS YQG++ + +N + + + AQL+++ + + ++ Sbjct 76 IVLGNLVGLIDSDYQGELMISTWNRGQTEFALNPFERLAQLVIVPVVQARFNLVDDFAQS 135 Query 665 ERGEKGFGSTG 675 ERG GFGSTG Sbjct 136 ERGAGGFGSTG 146 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Pasteurella multocida subsp. multocida str. Pm70] Sequence ID: P57914.1 Length: 151 Range 1: 25 to 149 Score:56.2 bits(134), Expect:4e-08, Method:Composition-based stats., Identities:40/125(32%), Positives:60/125(48%), Gaps:6/125(4%) Query 557 EEDAGYDL--ICPEEVTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG-- 611 E AG DL + +T+E GQ IP L L + A +I +S + K G Sbjct 25 EGSAGLDLRALIDAPMTVEAGQTVLIPTGLSLYIADPTLAAVILPRSGLGHKHGIVLGNL 84 Query 612 -GIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKG 670 G+IDS YQG + V ++N + + G + AQL+ + + + +TERGE G Sbjct 85 VGLIDSDYQGPLMVSLWNRSTEPFKVEVGDRIAQLVFVPVVQAEFNVVSDFAQTERGEGG 144 Query 671 FGSTG 675 FG +G Sbjct 145 FGHSG 149 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Chlorobaculum parvum NCIB 8327] Sequence ID: B3QML1.1 Length: 150 Range 1: 36 to 145 Score:56.2 bits(134), Expect:4e-08, Method:Composition-based stats., Identities:32/110(29%), Positives:53/110(48%), Gaps:3/110(2%) Query 570 VTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAKGVFT---QGGIIDSGYQGQIQVIM 626 VT+EP IP L + L + A + +S +A + + + ID+ Y+G++ VI+ Sbjct 36 VTLEPSSSALIPTGLAIELPEGYEAQLRPRSGLALRHLISLPNSPATIDADYRGEVGVIL 95 Query 627 YNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGSTGM 676 N + + G + AQ+++ E TERGE GFG TG+ Sbjct 96 INHGREPFTVNHGDRIAQMVVSKVDRVAFEEVDSLSDTERGEGGFGHTGV 145 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Alcanivorax borkumensis SK2] Sequence ID: Q0VT60.1 Length: 150 Range 1: 18 to 148 Score:56.2 bits(134), Expect:4e-08, Method:Composition-based stats., Identities:39/131(30%), Positives:66/131(50%), Gaps:8/131(6%) Query 553 LPKREED--AGYDL--ICPEEVTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGV 607 LP D AG DL + E +T++PG + +P + + + +A MI +S + K Sbjct 18 LPHYATDGSAGLDLRAMVKEPLTLQPGDTELLPTGMSIFIDDPGYAGMILPRSGLGHKHG 77 Query 608 FTQG---GIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKT 664 G G+IDS YQG++ V +N + + G + AQL+++ +L+ + Sbjct 78 IVLGNLVGLIDSDYQGELMVSCWNRGQQPFTLEPGERVAQLVIVPVMQVELKQVESFSAS 137 Query 665 ERGEKGFGSTG 675 +RGE GFG +G Sbjct 138 KRGEGGFGHSG 148 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Escherichia coli str. K-12 substr. DH10B] Sequence ID: B1X974.1 Length: 151 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Escherichia coli BW2952] Sequence ID: C4ZXN2.1 Length: 151 Range 1: 28 to 149 Score:56.2 bits(134), Expect:5e-08, Method:Composition-based stats., Identities:37/122(30%), Positives:60/122(49%), Gaps:6/122(4%) Query 560 AGYDL--ICPEEVTIEPGQVKCIPIELRLNLKK-SQWAMIATKSSMAAKGVFTQG---GI 613 AG DL + V + PG +P L +++ S AM+ +S + K G G+ Sbjct 28 AGLDLRACLNDAVELAPGDTTLVPTGLAIHIADPSLAAMMLPRSGLGHKHGIVLGNLVGL 87 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQ+ + ++N + + I G + AQ+I + + + T+RGE GFG Sbjct 88 IDSDYQGQLMISVWNRGQDSFTIQPGERIAQMIFVPVVQAEFNLVEDFDATDRGEGGFGH 147 Query 674 TG 675 +G Sbjct 148 SG 149 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Escherichia coli K-12] Sequence ID: P06968.2 Length: 152 Range 1: 29 to 150 Score:56.2 bits(134), Expect:5e-08, Method:Composition-based stats., Identities:37/122(30%), Positives:60/122(49%), Gaps:6/122(4%) Query 560 AGYDL--ICPEEVTIEPGQVKCIPIELRLNLKK-SQWAMIATKSSMAAKGVFTQG---GI 613 AG DL + V + PG +P L +++ S AM+ +S + K G G+ Sbjct 29 AGLDLRACLNDAVELAPGDTTLVPTGLAIHIADPSLAAMMLPRSGLGHKHGIVLGNLVGL 88 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQ+ + ++N + + I G + AQ+I + + + T+RGE GFG Sbjct 89 IDSDYQGQLMISVWNRGQDSFTIQPGERIAQMIFVPVVQAEFNLVEDFDATDRGEGGFGH 148 Query 674 TG 675 +G Sbjct 149 SG 150 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Pseudomonas putida GB-1] Sequence ID: B0KQ89.1 Length: 151 Range 1: 28 to 151 Score:55.8 bits(133), Expect:5e-08, Method:Composition-based stats., Identities:38/124(31%), Positives:60/124(48%), Gaps:6/124(4%) Query 560 AGYDL--ICPEEVTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL + E+ +EPGQ IP L + + A +I +S + K G G+ Sbjct 28 AGLDLRALLKEDTVLEPGQTLLIPTGLSIYIGDPGLAAVILPRSGLGHKHGIVLGNLVGL 87 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQG++ V +N + I G + AQL+L+ + +++RG GFG Sbjct 88 IDSDYQGELMVSCWNRSNTPFTIAVGERIAQLVLVPVVQAHFDIVEAFDESQRGAGGFGH 147 Query 674 TGMY 677 +G + Sbjct 148 SGSH 151 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Shigella sonnei Ss046] Sequence ID: Q3YW02.1 Length: 151 Range 1: 28 to 149 Score:55.8 bits(133), Expect:5e-08, Method:Composition-based stats., Identities:38/122(31%), Positives:62/122(50%), Gaps:6/122(4%) Query 560 AGYDL-ICPEE-VTIEPGQVKCIPIELRLNLKK-SQWAMIATKSSMAAKGVFTQG---GI 613 AG DL C ++ V + PG +P L +++ S AM+ +S + K G G+ Sbjct 28 AGLDLRACLDDAVELAPGDSTLVPTGLAIHIADPSLAAMMLPRSGLGHKHGIVLGNLVGL 87 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQ+ + ++N + + I G + AQ+I + + + T+RGE GFG Sbjct 88 IDSDYQGQLMISVWNRGQDSFTIQPGERIAQMIFVPVVQAEFNLVEDFDATDRGEGGFGH 147 Query 674 TG 675 +G Sbjct 148 SG 149 >RecName: Full=Gag-Pro polyprotein; AltName: Full=Pr95; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp24; Contains: RecName: Full=Phosphorylated protein pp18; Contains: RecName: Full=p12; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease 17 kDa; Contains: RecName: Full=Protease 13 kDa; Contains: RecName: Full=G-patch peptide [Mason-Pfizer monkey virus] Sequence ID: P07570.2 Length: 911 Range 1: 646 to 777 Score:60.1 bits(144), Expect:5e-08, Method:Compositional matrix adjust., Identities:39/137(28%), Positives:68/137(49%), Gaps:6/137(4%) Query 560 AGYDLICPEEVTIEPGQ-VKCIPIELRLNLKKSQWAMIATKSSMAAKGVFTQGGIIDSGY 618 AG DL + P + + + L + + +I +SS+ KG+ G+ID+ Y Sbjct 646 AGLDLCSTSHTVLTPEMGPQALSTGIYGPLPPNTFGLILGRSSITMKGLQVYPGVIDNDY 705 Query 619 QGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGSTGMYW 678 G+I+++ N I V + QG + AQLIL+ +E + ++ RG+ FGS+ +YW Sbjct 706 TGEIKIMAKAVNNI-VTVSQGNRIAQLILLP----LIETDNKVQQPYRGQGSFGSSDIYW 760 Query 679 IENIPLAEEDHTKWHQD 695 ++ I + T W D Sbjct 761 VQPITCQKPSLTLWLDD 777 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Pseudomonas paraeruginosa PA7] Sequence ID: A6VEC8.1 Length: 151 Range 1: 28 to 151 Score:55.8 bits(133), Expect:5e-08, Method:Composition-based stats., Identities:37/124(30%), Positives:61/124(49%), Gaps:6/124(4%) Query 560 AGYDL--ICPEEVTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL + E+ + PGQ IP L +++ A ++ +S + K G G+ Sbjct 28 AGLDLRAMLEEDTVLGPGQTLLIPTGLSIHIADPGLAALVLPRSGLGHKHGIVLGNLVGL 87 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQG++ V +N + I G + AQL+L+ E + +++RG GFG Sbjct 88 IDSDYQGELMVSCWNRGESPFTIAVGERIAQLVLVPVVQAHFELVEQFDESQRGAGGFGH 147 Query 674 TGMY 677 +G + Sbjct 148 SGSH 151 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Yersinia enterocolitica subsp. enterocolitica 8081] Sequence ID: A1JHX0.1 Length: 151 Range 1: 25 to 149 Score:55.8 bits(133), Expect:6e-08, Method:Composition-based stats., Identities:39/125(31%), Positives:60/125(48%), Gaps:6/125(4%) Query 557 EEDAGYDL--ICPEEVTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG-- 611 E AG DL E V + PGQ +P L +++ S A +I +S + K G Sbjct 25 EGSAGLDLRACLSEAVDLLPGQTTLLPTGLAIHIGDSSLAAVILPRSGLGHKHGVVLGNL 84 Query 612 -GIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKG 670 G+IDS YQGQ+ V ++N + I G + AQ++ + + + +ERG G Sbjct 85 VGLIDSDYQGQLMVSVWNRGQQPFTIEPGERIAQMVFVPVIQAEFNLVEDFDLSERGTGG 144 Query 671 FGSTG 675 FG +G Sbjct 145 FGHSG 149 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Serratia proteamaculans 568] Sequence ID: A8GLE7.1 Length: 152 Range 1: 29 to 152 Score:55.8 bits(133), Expect:6e-08, Method:Composition-based stats., Identities:37/124(30%), Positives:63/124(50%), Gaps:6/124(4%) Query 560 AGYDL-ICPEE-VTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL C + V + PG+ + +P L +++ + A +I +S + K G G+ Sbjct 29 AGLDLRACLDSAVELAPGETQLLPTGLAIHIADTDLAAVILPRSGLGHKHGVVLGNLVGL 88 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQ+ V ++N + + I G + AQ++ + + E +ERG GFG Sbjct 89 IDSDYQGQLMVSVWNRGQKSFTIEPGERIAQMVFVPVVQAEFNLVEEFDSSERGAGGFGH 148 Query 674 TGMY 677 +G + Sbjct 149 SGRH 152 >RecName: Full=Putative deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase [Frog virus 3 (isolate Goorha)] Sequence ID: Q6GZR2.1 Length: 164 Range 1: 11 to 143 Score:55.8 bits(133), Expect:7e-08, Method:Composition-based stats., Identities:34/133(26%), Positives:63/133(47%), Gaps:1/133(0%) Query 545 LAKEGEGILPKREEDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAA 604 L++ G++ AGYDL V + + +L + + + +A +S +A Sbjct 11 LSEHASGLIRGSAGAAGYDLAAAHPVVVPSFGRALVKTDLAVKMPPGLYGRVAPRSGLAL 70 Query 605 KGVFTQG-GIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRK 663 K G G++D Y+G + VI++N + +G + AQL+L + + Sbjct 71 KKFIDVGAGVVDPDYRGNLGVILFNFGCDPFRVKRGDRIAQLVLERYESPPILEVDSLDS 130 Query 664 TERGEKGFGSTGM 676 T+RG+ G+GSTG+ Sbjct 131 TDRGDAGYGSTGV 143 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Beijerinckia indica subsp. indica ATCC 9039] Sequence ID: B2IKJ9.1 Length: 160 Range 1: 47 to 155 Score:55.8 bits(133), Expect:7e-08, Method:Composition-based stats., Identities:36/109(33%), Positives:53/109(48%), Gaps:3/109(2%) Query 570 VTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAK---GVFTQGGIIDSGYQGQIQVIM 626 + +EPG +P L + + A + +S +A K V G ID+ Y+G+I VI+ Sbjct 47 LVLEPGGRHLLPTGFCLEIPEGYEAQVRPRSGLARKHGVTVLNTPGTIDADYRGEIGVIL 106 Query 627 YNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGSTG 675 N I +G + AQL++ +L TERGE GFGSTG Sbjct 107 INMGDEPFEIVRGTRIAQLVVAPCVQAELIETHTLSDTERGEDGFGSTG 155 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Escherichia coli S88] Sequence ID: B7MFK1.1 Length: 151 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Escherichia coli ED1a] Sequence ID: B7N1U1.1 Length: 151 Range 1: 28 to 149 Score:55.5 bits(132), Expect:7e-08, Method:Composition-based stats., Identities:38/122(31%), Positives:61/122(50%), Gaps:6/122(4%) Query 560 AGYDL-ICPEE-VTIEPGQVKCIPIELRLNLKK-SQWAMIATKSSMAAKGVFTQG---GI 613 AG DL C ++ V + PG +P L +++ S AM+ +S + K G G+ Sbjct 28 AGLDLRACLDDAVELAPGDTTLVPTGLAIHIADPSLAAMMLPRSGLGHKHGIVLGNLVGL 87 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQ+ + ++N + I G + AQ+I + + + T+RGE GFG Sbjct 88 IDSDYQGQLMISVWNRGQDNFTIQPGERIAQMIFVPVVQAEFNLVEDFDATDRGEGGFGH 147 Query 674 TG 675 +G Sbjct 148 SG 149 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Escherichia coli APEC O1] Sequence ID: A1AHH1.1 Length: 152 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Escherichia coli UTI89] Sequence ID: Q1R4V2.1 Length: 152 Range 1: 29 to 150 Score:55.5 bits(132), Expect:8e-08, Method:Composition-based stats., Identities:38/122(31%), Positives:61/122(50%), Gaps:6/122(4%) Query 560 AGYDL-ICPEE-VTIEPGQVKCIPIELRLNLKK-SQWAMIATKSSMAAKGVFTQG---GI 613 AG DL C ++ V + PG +P L +++ S AM+ +S + K G G+ Sbjct 29 AGLDLRACLDDAVELAPGDTTLVPTGLAIHIADPSLAAMMLPRSGLGHKHGIVLGNLVGL 88 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQ+ + ++N + I G + AQ+I + + + T+RGE GFG Sbjct 89 IDSDYQGQLMISVWNRGQDNFTIQPGERIAQMIFVPVVQAEFNLVEDFDATDRGEGGFGH 148 Query 674 TG 675 +G Sbjct 149 SG 150 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Sequence ID: A6TFN1.1 Length: 152 Range 1: 29 to 150 Score:55.5 bits(132), Expect:8e-08, Method:Composition-based stats., Identities:38/122(31%), Positives:62/122(50%), Gaps:6/122(4%) Query 560 AGYDL-ICPEE-VTIEPGQVKCIPIELRLNLKK-SQWAMIATKSSMAAKGVFTQG---GI 613 AG DL C ++ V + PG +P L +++ S A+I +S + K G G+ Sbjct 29 AGLDLRACLDDAVELAPGATTLLPTGLAIHIADPSLAAVILPRSGLGHKHGVVLGNLVGL 88 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQ+ V ++N + + +I G + AQ++ + + T+RGE GFG Sbjct 89 IDSDYQGQLMVSVWNRGQQSFIIEPGERIAQMVFVPVVQAEFNLVESFDATDRGEGGFGH 148 Query 674 TG 675 +G Sbjct 149 SG 150 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Psychromonas ingrahamii 37] Sequence ID: A1SR17.1 Length: 151 Range 1: 28 to 151 Score:55.5 bits(132), Expect:9e-08, Method:Composition-based stats., Identities:38/124(31%), Positives:63/124(50%), Gaps:6/124(4%) Query 560 AGYDL-ICPEE-VTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL C ++ + I+PG+ + IP + +++ A I +S + K G G+ Sbjct 28 AGMDLRACIDQALIIKPGETQLIPTGIAIHISDPGLAATILPRSGLGHKHGIVLGNLVGL 87 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQG + V +N + + + G + AQL+ + E E + +ERGE GFG Sbjct 88 IDSDYQGPLMVSCWNRSTESFRLEPGERLAQLVFLPVVQATFEIVDEFKSSERGEGGFGH 147 Query 674 TGMY 677 +G + Sbjct 148 SGKH 151 >RecName: Full=Enzymatic polyprotein; Includes: RecName: Full=Aspartic protease; Includes: RecName: Full=Endonuclease; Includes: RecName: Full=Reverse transcriptase [Cauliflower mosaic virus (STRAIN D/H)] Sequence ID: P03556.1 Length: 674 Range 1: 255 to 491 Score:58.9 bits(141), Expect:1e-07, Method:Compositional matrix adjust., Identities:69/256(27%), Positives:113/256(44%), Gaps:28/256(10%) Query 23 EEKLKGLTEIID-KLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRELNKQTEDL 81 EE K + E++D K+++ K P + N +K+ GK RM+++++ +NK T Sbjct 255 EEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEA---EKRRGKKRMVVNYKAMNKAT--- 308 Query 82 TEAQLGLPHPGGL----QKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPCKR 137 P+ L + KK + D ++ + L + R T FT P Sbjct 309 VGDAYNPPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTC-------PQGH 361 Query 138 YYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHREIVK 197 Y W V+P G K +PS++Q M E + + +Y+DDI + S+ E + H V Sbjct 362 YEWNVVPFGLKQAPSIFQRHMDEAFRVFRK-----FCCVYVDDILVFSNNE-EDHLLHVA 415 Query 198 DLANYIAQYGFTLPEEKRQKGYPA-KWLGFELHPQTWKFQKHTLPELTKGTITL---NKL 253 + Q+G L ++K Q +LG E+ T K Q H L + K TL +L Sbjct 416 MILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQL 475 Query 254 QKLVGELVWRQSIIGK 269 Q+ +G L + I K Sbjct 476 QRFLGILTYASDYIPK 491 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Dictyoglomus turgidum DSM 6724] Sequence ID: B8E029.1 Length: 147 Range 1: 48 to 147 Score:55.1 bits(131), Expect:1e-07, Method:Composition-based stats., Identities:33/100(33%), Positives:55/100(55%), Gaps:3/100(3%) Query 580 IPIELRLNLKKSQWAMIATKSSMAAK---GVFTQGGIIDSGYQGQIQVIMYNSNKIAVVI 636 IP +R+ L + A++ +S +AA+ V G+IDS Y+G+I V + N + + Sbjct 48 IPTGIRIALPEGYLALVLPRSGLAAREGISVLNTPGLIDSDYRGEIFVNLINFSNKPFLG 107 Query 637 PQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGSTGM 676 +G + AQL+++ E + +TERGE G GSTG+ Sbjct 108 KRGMRIAQLLVLQYSRIIWEEVEQLPQTERGEGGLGSTGL 147 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Sequence ID: B5BI14.1 Length: 151 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Sequence ID: B5R5G4.1 Length: 151 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] Sequence ID: B5RGE7.1 Length: 151 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] Sequence ID: P64008.1 Length: 151 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Salmonella enterica subsp. enterica serovar Typhi] Sequence ID: P64009.1 Length: 151 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] Sequence ID: Q5PC28.1 Length: 151 Range 1: 28 to 149 Score:55.1 bits(131), Expect:1e-07, Method:Composition-based stats., Identities:38/122(31%), Positives:61/122(50%), Gaps:6/122(4%) Query 560 AGYDL-ICPEE-VTIEPGQVKCIPIELRLNLKK-SQWAMIATKSSMAAKGVFTQG---GI 613 AG DL C ++ V + PG +P L +++ S A++ +S + K G G+ Sbjct 28 AGLDLRACLDDAVELAPGATTLVPTGLAIHIADPSLAAVMLPRSGLGHKHGIVLGNLVGL 87 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQ+ V ++N + + I G + AQ++ + + TERGE GFG Sbjct 88 IDSDYQGQLMVSIWNRGQDSFTIEPGERIAQMVFVPVVQAEFNLVEAFDATERGEGGFGH 147 Query 674 TG 675 +G Sbjct 148 SG 149 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Pseudomonas putida F1] Sequence ID: A5WB04.1 Length: 151 Range 1: 28 to 151 Score:55.1 bits(131), Expect:1e-07, Method:Composition-based stats., Identities:38/124(31%), Positives:59/124(47%), Gaps:6/124(4%) Query 560 AGYDL--ICPEEVTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL + E+ +EPGQ IP L + + A +I +S + K G G+ Sbjct 28 AGLDLRALLKEDTLLEPGQTILIPTGLSIYIGDPGLAAVILPRSGLGHKHGIVLGNLVGL 87 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQG++ V +N I G + AQL+L+ + +++RG GFG Sbjct 88 IDSDYQGELMVSCWNRGNTPFTIAVGERIAQLVLVPVVQAHFDIVEAFDESQRGAGGFGH 147 Query 674 TGMY 677 +G + Sbjct 148 SGSH 151 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Sequence ID: A9MVN5.1 Length: 152 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Salmonella enterica subsp. enterica serovar Newport str. SL254] Sequence ID: B4SXE1.1 Length: 152 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] Sequence ID: B4T9C4.1 Length: 152 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] Sequence ID: B4TZY1.1 Length: 152 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Salmonella enterica subsp. enterica serovar Agona str. SL483] Sequence ID: B5EXE4.1 Length: 152 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Sequence ID: B5FM63.1 Length: 152 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Salmonella enterica subsp. enterica serovar Paratyphi C str. RKS4594] Sequence ID: C0Q1X2.1 Length: 152 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] Sequence ID: Q57IA2.1 Length: 152 Range 1: 29 to 150 Score:55.1 bits(131), Expect:1e-07, Method:Composition-based stats., Identities:38/122(31%), Positives:61/122(50%), Gaps:6/122(4%) Query 560 AGYDL-ICPEE-VTIEPGQVKCIPIELRLNLKK-SQWAMIATKSSMAAKGVFTQG---GI 613 AG DL C ++ V + PG +P L +++ S A++ +S + K G G+ Sbjct 29 AGLDLRACLDDAVELAPGATTLVPTGLAIHIADPSLAAVMLPRSGLGHKHGIVLGNLVGL 88 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQ+ V ++N + + I G + AQ++ + + TERGE GFG Sbjct 89 IDSDYQGQLMVSIWNRGQDSFTIEPGERIAQMVFVPVVQAEFNLVEAFDATERGEGGFGH 148 Query 674 TG 675 +G Sbjct 149 SG 150 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Methylibium petroleiphilum PM1] Sequence ID: A2SIY4.1 Length: 149 Range 1: 26 to 147 Score:55.1 bits(131), Expect:1e-07, Method:Composition-based stats., Identities:40/122(33%), Positives:60/122(49%), Gaps:6/122(4%) Query 560 AGYDL-ICPEE-VTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL C + + +EPGQ + IP L +++ A +I +S + K G G+ Sbjct 26 AGLDLRACLDAPLLLEPGQTQLIPTGLSIHIGDPGLAAVILPRSGLGHKHGIVLGNLVGL 85 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQG + V +N A + + AQL+++ + +ERGE GFGS Sbjct 86 IDSDYQGPLMVSCWNRGLAAFTVQPLERIAQLVIVPVVQASFRVVDDFGASERGEGGFGS 145 Query 674 TG 675 TG Sbjct 146 TG 147 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Shewanella loihica PV-4] Sequence ID: A3QIQ1.1 Length: 152 Range 1: 29 to 150 Score:55.1 bits(131), Expect:1e-07, Method:Composition-based stats., Identities:39/122(32%), Positives:61/122(50%), Gaps:6/122(4%) Query 560 AGYDLICPEEVT--IEPGQVKCIPIELRLNLKK-SQWAMIATKSSMAAKGVFTQG---GI 613 AG DL E T I+PG+ + IP + +++ S A+I +S M K G G+ Sbjct 29 AGMDLRAMIETTMVIQPGETQLIPTGIAVHVADPSLAAVILPRSGMGHKHGIVLGNLVGL 88 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQG + V +N + + G + AQL+ + + + E ++RGE GFG Sbjct 89 IDSDYQGPLMVSCWNRSNEPFTLEIGDRLAQLVFVPVVQAEFKLVDEFDTSDRGEGGFGH 148 Query 674 TG 675 +G Sbjct 149 SG 150 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Glaesserella parasuis SH0165] Sequence ID: B8F854.1 Length: 151 Range 1: 28 to 149 Score:54.7 bits(130), Expect:1e-07, Method:Composition-based stats., Identities:37/122(30%), Positives:59/122(48%), Gaps:6/122(4%) Query 560 AGYDL--ICPEEVTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL + + +T+E GQ IP + + + A +I +S + K G G+ Sbjct 28 AGLDLRALIEQPLTVEAGQTVLIPTGISVYIADPNLAAVILPRSGLGHKNGIVLGNLIGL 87 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQG + V ++N + + G + AQL+ + + E T+RGE GFG Sbjct 88 IDSDYQGPLMVSLWNRSDKPFTVEVGDRIAQLVFVPVVQAQFNIVEEFTATDRGEGGFGH 147 Query 674 TG 675 +G Sbjct 148 SG 149 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Pseudomonas aeruginosa UCBPP-PA14] Sequence ID: Q02E41.1 Length: 151 Range 1: 28 to 151 Score:54.7 bits(130), Expect:1e-07, Method:Composition-based stats., Identities:37/124(30%), Positives:60/124(48%), Gaps:6/124(4%) Query 560 AGYDL--ICPEEVTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL + E+ + PGQ IP L + + A ++ +S + K G G+ Sbjct 28 AGLDLRAMLKEDTVLGPGQTLLIPTGLSIYIADPGLAALVLPRSGLGHKHGIVLGNLVGL 87 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQG++ V +N + I G + AQL+L+ E + +++RG GFG Sbjct 88 IDSDYQGELMVSCWNRGESPFTIAVGERIAQLVLVPVVQAHFELVEQFDESQRGAGGFGH 147 Query 674 TGMY 677 +G + Sbjct 148 SGSH 151 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Chlorobium limicola DSM 245] Sequence ID: B3EIP1.1 Length: 153 Range 1: 24 to 145 Score:54.7 bits(130), Expect:1e-07, Method:Composition-based stats., Identities:36/122(30%), Positives:61/122(50%), Gaps:5/122(4%) Query 560 AGYDLI-CPEE-VTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAKGVFT---QGGII 614 AG D+ C +E V +EP IP + L + A + +S +A K + + I Sbjct 24 AGMDVAACLDEPVMLEPFSTALIPSGFAIELPEGYEAQLRPRSGLALKHLISLPNSPATI 83 Query 615 DSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGST 674 D+ Y+G+++VI+ N K + G + AQ+++ + + E T+RGE GFG T Sbjct 84 DADYRGEVRVILVNFGKEPFSVAHGDRIAQMVVSRVERVDFDEAEELSMTQRGEGGFGHT 143 Query 675 GM 676 G+ Sbjct 144 GI 145 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Paramecium bursaria Chlorella virus 1] Sequence ID: O41033.1 Length: 141 Range 1: 21 to 112 Score:54.7 bits(130), Expect:1e-07, Method:Composition-based stats., Identities:29/92(32%), Positives:51/92(55%), Gaps:1/92(1%) Query 557 EEDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAK-GVFTQGGIID 615 E AGYD+ E+V + + + + + + IA +S +A K G+ G+ID Sbjct 21 EGAAGYDISSVEDVVVPAMGRIAVSTGISIRVPNGTYGRIAPRSGLAYKYGIDVLAGVID 80 Query 616 SGYQGQIQVIMYNSNKIAVVIPQGRKFAQLIL 647 S Y+G+++ I+YN+ + +I +G + AQLIL Sbjct 81 SDYRGELKAILYNTTERDYIIKKGDRIAQLIL 112 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Francisella philomiragia subsp. philomiragia ATCC 25017] Sequence ID: B0U0Z5.1 Length: 148 Range 1: 22 to 148 Score:54.7 bits(130), Expect:1e-07, Method:Composition-based stats., Identities:41/127(32%), Positives:64/127(50%), Gaps:7/127(5%) Query 557 EEDAGYDL-ICPEEVT-IEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG-- 611 E A DL C E + PG+ K I + +N+ +A MI +S + K G Sbjct 22 EGSAAVDLRACLSEAEFLSPGECKLIGTGIAINIANPNYAAMILPRSGLGHKKGLVLGNG 81 Query 612 -GIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGE-SRKTERGEK 669 G+IDS YQG++ V +N ++ + I +FAQL+++ K + E S++T R Sbjct 82 TGLIDSDYQGELMVSCFNRSQEVIEIEPMMRFAQLVVVPVVQAKFDIVEEFSQRTIRSAG 141 Query 670 GFGSTGM 676 GFG TG+ Sbjct 142 GFGHTGV 148 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Shewanella frigidimarina NCIMB 400] Sequence ID: Q07WF9.1 Length: 152 Range 1: 29 to 150 Score:54.7 bits(130), Expect:2e-07, Method:Composition-based stats., Identities:39/122(32%), Positives:58/122(47%), Gaps:6/122(4%) Query 560 AGYDL--ICPEEVTIEPGQVKCIPIELRLNLKK-SQWAMIATKSSMAAKGVFTQG---GI 613 AG DL + + IEP Q IP + +++ S A+I +S M K G G+ Sbjct 29 AGMDLRAMIDTAMVIEPSQTVLIPTGIAIHVADPSLAAVILPRSGMGHKHGIVLGNLVGL 88 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQ+ V +N + + G + AQL+ + E ++RGE GFG Sbjct 89 IDSDYQGQLMVSCWNRSDKPFTLEIGDRLAQLMFVPVIQATFAVVDEFNSSDRGEGGFGH 148 Query 674 TG 675 +G Sbjct 149 SG 150 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Chromobacterium violaceum ATCC 12472] Sequence ID: Q7MBE8.1 Length: 150 Range 1: 27 to 148 Score:54.3 bits(129), Expect:2e-07, Method:Composition-based stats., Identities:36/122(30%), Positives:61/122(50%), Gaps:6/122(4%) Query 560 AGYDL--ICPEEVTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL E +TI+PG+ + +P + ++L A M+ +S + K G G+ Sbjct 27 AGLDLRAATEETMTIQPGETQLVPTGIAIHLSDPGLAAMLLPRSGLGHKHGIVLGNLVGL 86 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQ+ V ++N + + + AQ++++ + ++RG GFGS Sbjct 87 IDSDYQGQMFVSVWNRGQQPFRLEPMERIAQMVIVPVVQASFNIVDDFDASDRGAGGFGS 146 Query 674 TG 675 TG Sbjct 147 TG 148 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Dechloromonas aromatica RCB] Sequence ID: Q47BB1.1 Length: 149 Range 1: 26 to 147 Score:54.3 bits(129), Expect:2e-07, Method:Composition-based stats., Identities:40/122(33%), Positives:60/122(49%), Gaps:6/122(4%) Query 560 AGYDL-ICPEE-VTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL C E + +EPGQ +P + ++L A MI +S + K G G+ Sbjct 26 AGLDLRACIEAPLHVEPGQTTLVPTGMAIHLADPGLAAMILPRSGLGHKHGIVLGNLVGL 85 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQG++ V ++N + + + AQLI++ + + RGE GFGS Sbjct 86 IDSDYQGELMVSVWNRGHASFTLNPLDRIAQLIIVPVLQVGFNIVDDFDASHRGEGGFGS 145 Query 674 TG 675 TG Sbjct 146 TG 147 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Yaba monkey tumor virus strain VR587] Sequence ID: Q6TUZ4.1 Length: 143 Range 1: 1 to 143 Score:54.3 bits(129), Expect:2e-07, Method:Composition-based stats., Identities:38/145(26%), Positives:73/145(50%), Gaps:6/145(4%) Query 536 IDKYISEIFLAKEGE-GILPKR--EEDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQ 592 + K+I +++ K E +P R ++ AGYDL + + P + ++ L++ Sbjct 1 MSKFI--VYVKKSSEFATIPTRSSKKSAGYDLYSAYDYLVRPKSRVLVKTDICLSIPDEC 58 Query 593 WAMIATKSSMAA-KGVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKK 651 + IA++S ++ + GG+ID Y+G I VI N+ I +G + AQ++ Sbjct 59 YGRIASRSGLSLNNSIDIGGGVIDGDYRGVIGVIFINNGNSPHYIKRGDRIAQIVFERLA 118 Query 652 HGKLEPWGESRKTERGEKGFGSTGM 676 + +++ T RG+ GFGS+G+ Sbjct 119 NVEIKEISNLDCTCRGDCGFGSSGI 143 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Psittacid herpesvirus 1 Amazon parrot/1997] Sequence ID: Q6UDM0.1 Length: 414 Range 1: 283 to 414 Score:57.4 bits(137), Expect:2e-07, Method:Compositional matrix adjust., Identities:40/135(30%), Positives:68/135(50%), Gaps:16/135(11%) Query 555 KREEDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAKGVFTQG-GI 613 K EDAGYD+ PE T+ PG + + +L++ K + A + +SSM KGV + + Sbjct 283 KEAEDAGYDIRAPENCTLPPGGSVRVILRQKLHMGKGRAAFVMGRSSMNLKGVLVEPERV 342 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKK---HGKLE--PWG-------ES 661 +D + + + N A + + AQL+ ++ K G ++ PW E Sbjct 343 VDDEW---VSFNITNIRDAAAFFRKNDRIAQLVALEDKLELMGGVDALPWRVVQSVQEEK 399 Query 662 RKTERGEKGFGSTGM 676 + + RG+KGFGS+G+ Sbjct 400 KNSSRGDKGFGSSGV 414 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Shewanella sp. MR-7] Sequence ID: Q0HZU5.1 Length: 152 Range 1: 29 to 150 Score:54.3 bits(129), Expect:2e-07, Method:Composition-based stats., Identities:36/122(30%), Positives:61/122(50%), Gaps:6/122(4%) Query 560 AGYDL--ICPEEVTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL + +TI PG+ + IP + +++ A ++ +S + K G G+ Sbjct 29 AGMDLRAMIDTTMTIAPGETQLIPTGIAIHVADPGLAAVLLPRSGLGHKHGIVLGNLVGL 88 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQG + V +N + I + G + AQL+ + + + E ++RGE GFG Sbjct 89 IDSDYQGPLMVSCWNRSDIPFTLEIGDRLAQLVFVPVVQAQFKLVDEFDSSDRGEGGFGH 148 Query 674 TG 675 +G Sbjct 149 SG 150 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-] Sequence ID: A9MKN5.1 Length: 152 Range 1: 29 to 150 Score:53.9 bits(128), Expect:2e-07, Method:Composition-based stats., Identities:38/122(31%), Positives:60/122(49%), Gaps:6/122(4%) Query 560 AGYDL-ICPE-EVTIEPGQVKCIPIELRLNLKK-SQWAMIATKSSMAAKGVFTQG---GI 613 AG DL C + V + PG +P L +++ S A++ +S + K G G+ Sbjct 29 AGLDLRACLDGAVELAPGATTLVPTGLAIHIADPSLAAVMLPRSGLGHKHGIVLGNLVGL 88 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQ+ V ++N + + I G + AQ++ + + TERGE GFG Sbjct 89 IDSDYQGQLMVSIWNRGQDSFTIEPGERIAQMVFVPVVQAEFNLVEAFDATERGEGGFGH 148 Query 674 TG 675 +G Sbjct 149 SG 150 >RecName: Full=Enzymatic polyprotein; Includes: RecName: Full=Aspartic protease; Includes: RecName: Full=Endonuclease; Includes: RecName: Full=Reverse transcriptase [Figwort mosaic virus (STRAIN DXS)] Sequence ID: P09523.1 Length: 666 Range 1: 254 to 489 Score:57.8 bits(138), Expect:3e-07, Method:Compositional matrix adjust., Identities:65/255(25%), Positives:115/255(45%), Gaps:32/255(12%) Query 28 GLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIK----KKSGKWRMLIDFRELNKQT----E 79 G + I +L++ G + P +P F ++ ++ GK RM+++++ +N+ T Sbjct 254 GFAKQIKELLDLGLI--IPSKSQHMSPAFLVENEAERRRGKKRMVVNYKAINQATIGDSH 311 Query 80 DLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPCKRYY 139 +L Q L L+ K + D ++ + L E ++ T FT P + Sbjct 312 NLPNMQELLTL---LRGKSIFSSFDCKSGFWQVVLDEESQKLTAFTC-------PQGHFQ 361 Query 140 WKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHREIVKDL 199 WKV+P G K +PS++Q MQ L + +Y+DDI + S+ E+ H V + Sbjct 362 WKVVPFGLKQAPSIFQRHMQTALNG-----ADKFCMVYVDDIIVFSNSEL-DHYNHVYAV 415 Query 200 ANYIAQYGFTLPEEKRQKGYPAK--WLGFELHPQTWKFQKHTLPELTKGTITL---NKLQ 254 + +YG L +K+ + K +LG E+ T Q H L + K L LQ Sbjct 416 LKIVEKYGIIL-SKKKANLFKEKINFLGLEIDKGTHCPQNHILENIHKFPDRLEDKKHLQ 474 Query 255 KLVGELVWRQSIIGK 269 + +G L + ++ I K Sbjct 475 RFLGVLTYAETYIPK 489 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Pelodictyon luteolum DSM 273] Sequence ID: Q3B304.1 Length: 148 Range 1: 24 to 145 Score:53.9 bits(128), Expect:3e-07, Method:Composition-based stats., Identities:35/122(29%), Positives:59/122(48%), Gaps:5/122(4%) Query 560 AGYDL-ICPEE-VTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAKGVFT---QGGII 614 AG D+ C E V + PG + I L + L + A + +S +A + + + I Sbjct 24 AGMDVSACLEAPVVVAPGSAELIATGLAIELPEGYEAQLRPRSGLALRNLISLPNSPATI 83 Query 615 DSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGST 674 D+ Y+G+++VI+ N + + G + AQ+++ + TERGE GFG T Sbjct 84 DADYRGEVKVILVNHGRDPFKVSHGDRIAQMVVARVEQVSFVEVDTLGDTERGEGGFGHT 143 Query 675 GM 676 GM Sbjct 144 GM 145 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Sequence ID: Q1LTS1.1 Length: 150 Range 1: 19 to 148 Score:53.9 bits(128), Expect:3e-07, Method:Composition-based stats., Identities:39/130(30%), Positives:64/130(49%), Gaps:7/130(5%) Query 553 LPKREE--DAGYDL-ICPEE-VTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGV 607 LPK AG DL C + +++EPG+ I L +++ + A +I +S + G+ Sbjct 19 LPKYATPGSAGIDLRACIDNTISLEPGETNLISTGLAVHIADTGLAGIIIPRSGLGHHGI 78 Query 608 FTQG--GIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTE 665 G+IDS YQG I V ++N K I + AQ++ + +K++ Sbjct 79 VLGNLVGLIDSDYQGSIMVSLWNRGKEIFTIQPNERIAQIVFVQIVQVYFNIVDNFQKSK 138 Query 666 RGEKGFGSTG 675 RGE+GFG +G Sbjct 139 RGERGFGHSG 148 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Sodalis glossinidius str. 'morsitans'] Sequence ID: Q2NQU0.1 Length: 151 Range 1: 28 to 149 Score:53.5 bits(127), Expect:3e-07, Method:Composition-based stats., Identities:37/122(30%), Positives:60/122(49%), Gaps:6/122(4%) Query 560 AGYDL-ICPEE-VTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL C +E + + PG+ IP L +++ + A +I +S + K G G+ Sbjct 28 AGLDLRACIDEPMVLAPGETTLIPTGLAIHIADANLAAVILPRSGLGHKHGIVLGNLVGL 87 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQG + V ++N + I G + AQ++ + + +ERGE GFG Sbjct 88 IDSDYQGPLMVSVWNRGQDIFTIEPGERMAQMVFVPVVQAEFNLVESFDTSERGEGGFGH 147 Query 674 TG 675 +G Sbjct 148 SG 149 >RecName: Full=Enzymatic polyprotein; Includes: RecName: Full=Aspartic protease; Includes: RecName: Full=Endonuclease; Includes: RecName: Full=Reverse transcriptase [Cauliflower mosaic virus (STRAIN NY8153)] Sequence ID: Q00962.1 Length: 680 Range 1: 261 to 501 Score:57.0 bits(136), Expect:4e-07, Method:Compositional matrix adjust., Identities:69/264(26%), Positives:115/264(43%), Gaps:32/264(12%) Query 23 EEKLKGLTEIID-KLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRELNKQTEDL 81 EE K + E++D K+++ K P + N + G RM+++++ +NK T Sbjct 261 EEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEA---ENGRGNKRMVVNYKAMNKAT--- 314 Query 82 TEAQLGLPHPGGL----QKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPCKR 137 LP+ L + KK + D ++ + L + R T FT P Sbjct 315 VGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTC-------PQGH 367 Query 138 YYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHREIVK 197 Y W V+P G K +PS++Q M E + + +Y+DDI + S+ E + H V Sbjct 368 YEWNVVPFGLKQAPSIFQRHMDEAFRVFRK-----FCCVYVDDIVVFSNNE-EDHLLHVA 421 Query 198 DLANYIAQYGFTLPEEKRQKGYPA-KWLGFELHPQTWKFQKHTLPELTKGTITL---NKL 253 + Q+G L ++K Q +LG E+ T K Q H L + K TL +L Sbjct 422 MILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQL 481 Query 254 QKLVGELVWRQSIIGKSIPNILKL 277 Q+ +G L + IPN+ ++ Sbjct 482 QRFLGILTYASDY----IPNLAQM 501 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Shewanella sp. ANA-3] Sequence ID: A0L1S1.1 Length: 152 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Shewanella sp. MR-4] Sequence ID: Q0HE54.1 Length: 152 Range 1: 29 to 150 Score:53.5 bits(127), Expect:4e-07, Method:Composition-based stats., Identities:36/122(30%), Positives:60/122(49%), Gaps:6/122(4%) Query 560 AGYDL--ICPEEVTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL + +TI PG+ + IP + +++ A +I +S + K G G+ Sbjct 29 AGMDLRAMIDTTMTIAPGETQLIPTGIAIHVADPGLAAVILPRSGLGHKHGIVLGNLVGL 88 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQG + V +N + + G + AQL+ + + + E ++RGE GFG Sbjct 89 IDSDYQGPLMVSCWNRSDTPFTLEIGDRLAQLVFVPVVQAQFKLVDEFDSSDRGEGGFGH 148 Query 674 TG 675 +G Sbjct 149 SG 150 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Pseudomonas aeruginosa LESB58] Sequence ID: B7V5L2.1 Length: 151 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Pseudomonas aeruginosa PAO1] Sequence ID: Q9HTN3.1 Length: 151 Range 1: 28 to 151 Score:53.1 bits(126), Expect:5e-07, Method:Composition-based stats., Identities:37/124(30%), Positives:59/124(47%), Gaps:6/124(4%) Query 560 AGYDL--ICPEEVTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL + E+ + PGQ IP L + + A ++ +S + K G G+ Sbjct 28 AGLDLRAMLKEDSVLGPGQTLLIPTGLSIYIADPGLAALVLPRSGLGHKHGIVLGNLVGL 87 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQG++ V +N + I G + AQL+L+ E +++RG GFG Sbjct 88 IDSDYQGELMVSCWNRGESPFTIAVGERIAQLVLVPVVQAHFELVEAFDESQRGAGGFGH 147 Query 674 TGMY 677 +G + Sbjct 148 SGSH 151 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Nitrosococcus oceani ATCC 19707] Sequence ID: Q3J6W1.1 Length: 151 Range 1: 28 to 151 Score:53.1 bits(126), Expect:5e-07, Method:Composition-based stats., Identities:41/124(33%), Positives:59/124(47%), Gaps:6/124(4%) Query 560 AGYDL-ICPEE-VTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL C E + I PG K IP L + + ++A ++ +S + K G G+ Sbjct 28 AGLDLRACIERPLAILPGATKLIPTGLAIYIADPRFAAVLLPRSGLGHKQGIVLGNLVGL 87 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQG+I V +N + G + AQ+I + + E T RGE GFG Sbjct 88 IDSDYQGEILVSCWNRGAEPFTLAVGERIAQMIFVPVVQMEFEQVETFTATLRGEGGFGH 147 Query 674 TGMY 677 TG + Sbjct 148 TGRH 151 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Shewanella sp. W3-18-1] Sequence ID: A1REU2.1 Length: 152 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Shewanella putrefaciens CN-32] Sequence ID: A4Y2K9.1 Length: 152 Range 1: 29 to 150 Score:52.8 bits(125), Expect:7e-07, Method:Composition-based stats., Identities:36/122(30%), Positives:60/122(49%), Gaps:6/122(4%) Query 560 AGYDL--ICPEEVTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL + +TI PG+ + IP + +++ A +I +S + K G G+ Sbjct 29 AGMDLRAMIDTTMTIAPGETQLIPTGIAIHVADPGLAAVILPRSGLGHKHGIVLGNLVGL 88 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQG + V +N + + G + AQL+ + + + E ++RGE GFG Sbjct 89 IDSDYQGPLMVSCWNRSNSPFTLDIGDRLAQLVFVPVVQAQFKLVDEFDSSDRGEGGFGH 148 Query 674 TG 675 +G Sbjct 149 SG 150 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Shewanella oneidensis MR-1] Sequence ID: Q8E9M0.1 Length: 152 Range 1: 29 to 150 Score:52.8 bits(125), Expect:7e-07, Method:Composition-based stats., Identities:34/122(28%), Positives:60/122(49%), Gaps:6/122(4%) Query 560 AGYDL--ICPEEVTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL + +TI PG+ + +P + +++ A +I +S + K G G+ Sbjct 29 AGMDLRAMIDTTMTIAPGETQLVPTGIAIHVADPGLAALILPRSGLGHKHGIVLGNLVGL 88 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 +DS YQG + V +N + + G + AQL+ + + + E ++RGE GFG Sbjct 89 VDSDYQGPLMVSCWNRSDTPFTLEIGDRLAQLVFVPVVQAQFKLVDEFDSSDRGEGGFGH 148 Query 674 TG 675 +G Sbjct 149 SG 150 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Kluyveromyces lactis NRRL Y-1140] Sequence ID: Q6CQN7.1 Length: 148 Range 1: 29 to 146 Score:52.8 bits(125), Expect:7e-07, Method:Composition-based stats., Identities:36/121(30%), Positives:59/121(48%), Gaps:8/121(6%) Query 560 AGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAK-GVFTQGGIIDSGY 618 AGYD+ + I ++ + + IA +S +A K G+ T G++D Y Sbjct 29 AGYDIYASQPGVIPARGQGIAKTDISFTVPVGTYGRIAPRSGLAVKHGIQTGAGVVDRDY 88 Query 619 QGQIQVIMYNSNKIAVVIPQGRKFAQLIL----MDKKHGKLEPWGESRKTERGEKGFGST 674 G++ ++++N + I +G + AQLIL D + +E E T+RG GFGST Sbjct 89 TGEVGIVLFNHSDKDFQINKGDRVAQLILEKIVEDAEIVVVESLEE---TQRGAGGFGST 145 Query 675 G 675 G Sbjct 146 G 146 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Rhodococcus erythropolis PR4] Sequence ID: C0ZYU5.1 Length: 164 Range 1: 18 to 118 Score:52.8 bits(125), Expect:8e-07, Method:Composition-based stats., Identities:32/101(32%), Positives:55/101(54%), Gaps:6/101(5%) Query 553 LPKREE--DAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAK---GV 607 +P+R DAG DL +VTIEPG + + + L +I +S +AAK + Sbjct 18 VPQRAHPGDAGVDLCSTSDVTIEPGHRTLVGTGIAIALPVGTVGLIHPRSGLAAKSGLSI 77 Query 608 FTQGGIIDSGYQGQIQVIMYNSN-KIAVVIPQGRKFAQLIL 647 G +D+GY+G+++V + N + A+ I +G + AQL++ Sbjct 78 VNAPGTVDAGYRGELKVCLINLDPATAIDIRRGDRIAQLVV 118 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Halorhodospira halophila SL1] Sequence ID: A1WZE9.1 Length: 153 Range 1: 39 to 151 Score:52.4 bits(124), Expect:9e-07, Method:Composition-based stats., Identities:39/113(35%), Positives:59/113(52%), Gaps:5/113(4%) Query 568 EEVTIEPGQVKCIPIELRLNLKKSQW-AMIATKSSMAAK-GV-FTQG-GIIDSGYQGQIQ 623 E + +EPGQ + I L +N+ ++A++S ++ K G+ QG G+IDS Y G+I Sbjct 39 EPLALEPGQRRLIGTGLAVNIHDPGLVGVVASRSGLSLKHGLRVAQGIGVIDSDYHGEIG 98 Query 624 VIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGE-SRKTERGEKGFGSTG 675 VI+ + I G + AQL+ L+ S TERGE GFG +G Sbjct 99 VILAHDGTEPYTITPGERIAQLLFQPVVQVTLDYVSAFSATTERGEGGFGHSG 151 >RecName: Full=Ribonuclease H; Short=RNase H [Bradyrhizobium diazoefficiens USDA 110] Sequence ID: Q89UU3.1 Length: 154 Range 1: 8 to 142 Score:52.4 bits(124), Expect:9e-07, Method:Compositional matrix adjust., Identities:45/141(32%), Positives:69/141(48%), Gaps:25/141(17%) Query 428 TYYTDGGKKNKVG--SLGFIVSTGEKFRKHEEG----TNQQLELRAIEEALK--QGPQTM 479 T YTDG G G I+ G+K ++ G TN Q+EL A AL+ + P T+ Sbjct 8 TIYTDGACSGNPGPGGWGAILKFGDKEKELNGGERHTTNNQMELMAAISALEALKKPCTV 67 Query 480 NLVTDSRYAFEFLL-----------RNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHK 528 +L TDS+Y + + R D++ +KN + ++ A K ++ HWV GH Sbjct 68 DLYTDSQYVRQGITGWIHGWKRNGWRTADKKPVKNVELWQRLDAALKAHQVRWHWVKGHA 127 Query 529 GIPQNEEIDKYISEIFLAKEG 549 G P+NE D+ LA++G Sbjct 128 GHPENERADQ------LARDG 142 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Suid herpesvirus 1 strain Kaplan] Sequence ID: Q90030.1 Length: 268 Range 1: 124 to 268 Score:54.3 bits(129), Expect:1e-06, Method:Compositional matrix adjust., Identities:38/150(25%), Positives:69/150(46%), Gaps:28/150(18%) Query 550 EGILPKREEDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAKGVFT 609 E PKR+EDAGYD+ CP E+ + PG + + + + + WA + +SS+ +G+ Sbjct 124 EVFAPKRDEDAGYDIPCPRELVLPPGGAETVTLPVHRTDGR-HWAYVFGRSSLNLRGIV- 181 Query 610 QGGIIDSGYQ-GQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHG---KLEPWGESRK-- 663 + + ++ G + + N V + G++ AQL+L + G P+ + + Sbjct 182 ---VFPTPWESGPCRFRIQNRGAHPVTLESGQRVAQLVLTREPLGWITGRSPFPATPRAP 238 Query 664 -----------------TERGEKGFGSTGM 676 + RG +GFGSTG+ Sbjct 239 MQHRPAWLFARDFVAPSSARGARGFGSTGL 268 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Pectobacterium carotovorum subsp. carotovorum PC1] Sequence ID: C6DIC3.1 Length: 152 Range 1: 29 to 150 Score:52.0 bits(123), Expect:1e-06, Method:Composition-based stats., Identities:35/122(29%), Positives:62/122(50%), Gaps:6/122(4%) Query 560 AGYDL-ICPEE-VTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL C ++ + ++ G+ IP L +++ + A +I +S + K G G+ Sbjct 29 AGLDLRACLDQAIELKAGETTLIPTGLAIHIADTGLAAVILPRSGLGHKHGVVLGNLVGL 88 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQ+ V ++N + + G + AQ++ + + + +ERGE GFG Sbjct 89 IDSDYQGQLMVSVWNRGQQTFTVEPGERIAQMVFVPVVQAEFNLVEDFVSSERGEGGFGH 148 Query 674 TG 675 +G Sbjct 149 SG 150 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Mycobacterium avium 104] Sequence ID: A0QIM8.1 Length: 154 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Mycobacterium avium subsp. paratuberculosis K-10] Sequence ID: P61910.1 Length: 154 Range 1: 16 to 116 Score:52.0 bits(123), Expect:1e-06, Method:Composition-based stats., Identities:31/101(31%), Positives:56/101(55%), Gaps:6/101(5%) Query 553 LPKR--EEDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAK---GV 607 LP R E DAG DL E+V +EPG+ + + + + ++ +S +AA+ + Sbjct 16 LPSRAHEGDAGVDLYSAEDVRLEPGRRALVRTGVAVAIPFGMVGLVHPRSGLAARVGLSI 75 Query 608 FTQGGIIDSGYQGQIQVIMYNSNKI-AVVIPQGRKFAQLIL 647 G ID+GY+G+I+V + N + +V+ +G + AQL++ Sbjct 76 VNSPGTIDAGYRGEIKVALINLDPAEPIVVHRGDRIAQLLV 116 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Shewanella baltica OS155] Sequence ID: A3CZJ4.1 Length: 152 Range 1: 29 to 150 Score:51.6 bits(122), Expect:2e-06, Method:Composition-based stats., Identities:36/122(30%), Positives:60/122(49%), Gaps:6/122(4%) Query 560 AGYDL--ICPEEVTIEPGQVKCIPIELRLNL-KKSQWAMIATKSSMAAKGVFTQG---GI 613 AG DL + +TI PG+ IP + +++ + A+I +S + K G G+ Sbjct 29 AGMDLRAMIDTTLTIAPGETVLIPTGIAIHVADQGLAAVILPRSGLGHKHGIVLGNLVGL 88 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQG + V +N + + G + AQL+ + + + E ++RGE GFG Sbjct 89 IDSDYQGPLMVSCWNRSDSPFALEIGDRLAQLVFVPVVQAQFKLVDEFDSSDRGEGGFGH 148 Query 674 TG 675 +G Sbjct 149 SG 150 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Pectobacterium atrosepticum SCRI1043] Sequence ID: Q6DAV9.1 Length: 152 Range 1: 29 to 150 Score:51.6 bits(122), Expect:2e-06, Method:Composition-based stats., Identities:35/122(29%), Positives:62/122(50%), Gaps:6/122(4%) Query 560 AGYDL-ICPEE-VTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL C ++ + ++ G+ IP L +++ + A +I +S + K G G+ Sbjct 29 AGLDLRACLDQAIELKAGETTLIPTGLAIHIADTGLAAVILPRSGLGHKHGVVLGNLVGL 88 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQ+ V ++N + + G + AQ++ + + + +ERGE GFG Sbjct 89 IDSDYQGQLMVSVWNRGQQTFTVEPGERIAQMVFVPVVQAEFNLVEDFVGSERGEGGFGH 148 Query 674 TG 675 +G Sbjct 149 SG 150 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Shewanella baltica OS185] Sequence ID: A6WIA4.1 Length: 152 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Shewanella baltica OS195] Sequence ID: A9KY02.1 Length: 152 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Shewanella baltica OS223] Sequence ID: B8E4J3.1 Length: 152 Range 1: 29 to 150 Score:51.2 bits(121), Expect:2e-06, Method:Composition-based stats., Identities:36/122(30%), Positives:59/122(48%), Gaps:6/122(4%) Query 560 AGYDL--ICPEEVTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL + +TI PG+ IP + +++ A +I +S + K G G+ Sbjct 29 AGMDLRAMIDTTLTIAPGETVLIPTGIAIHVADPGLAAVILPRSGLGHKHGIVLGNLVGL 88 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQG + V +N + + G + AQL+ + + + E ++RGE GFG Sbjct 89 IDSDYQGPLMVSCWNRSDSPFALEIGDRLAQLVFVPVVQAQFKLVDEFDSSDRGEGGFGH 148 Query 674 TG 675 +G Sbjct 149 SG 150 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Francisella tularensis subsp. holarctica FTNF002-00] Sequence ID: A7N9S0.1 Length: 148 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Francisella tularensis subsp. holarctica OSU18] Sequence ID: Q0BNT3.1 Length: 148 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Francisella tularensis subsp. holarctica LVS] Sequence ID: Q2A5H6.1 Length: 148 Range 1: 35 to 148 Score:50.8 bits(120), Expect:3e-06, Method:Composition-based stats., Identities:33/114(29%), Positives:59/114(51%), Gaps:5/114(4%) Query 568 EEVTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GIIDSGYQGQIQ 623 E + ++ G+ K I + +N+ +A MI +S + K G G+IDS YQG++ Sbjct 35 ESIYLKSGECKLIATGIAINIANPNYAAMILPRSGLGHKKGLVLGNGTGLIDSDYQGELM 94 Query 624 VIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGE-SRKTERGEKGFGSTGM 676 V +N ++ + I +FAQL+++ E + S+++ R GFG TG+ Sbjct 95 VSCFNRSQETIEIEPLMRFAQLVIVPVVQANFEIVEDFSQQSVRATGGFGHTGV 148 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Lactococcus lactis subsp. lactis Il1403] Sequence ID: Q9CJ30.1 Length: 150 Range 1: 7 to 149 Score:50.8 bits(120), Expect:3e-06, Method:Composition-based stats., Identities:43/146(29%), Positives:68/146(46%), Gaps:15/146(10%) Query 542 EIFLAKEGEGI-LPKR--EEDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIAT 598 E+ + GI +PKR E AGYD+ E V+ PG++K IP L+ ++ + + Sbjct 7 EVVTKYKNAGINIPKRSTEHSAGYDIEAAETVSFAPGEIKLIPTGLKAYMQAGEVLYMYD 66 Query 599 KSSMAAKG---VFTQGGIIDSGY------QGQIQVIMYNSNKIAVVIPQGRKFAQLILMD 649 +SS K + G+ID Y +G + + M N VVI +G + Q + M Sbjct 67 RSSNPRKKGLVLINSVGVIDKDYYNNPDNEGHMFMQMRNFTDEEVVIEKGERVVQGVFMP 126 Query 650 KKHGKLEPWGESRKTERGEKGFGSTG 675 + E+++ E GFGSTG Sbjct 127 F---LVADGDENQEKEERTGGFGSTG 149 >RecName: Full=dCTP deaminase, dUMP-forming; AltName: Full=Bifunctional dCTP deaminase:dUTPase; AltName: Full=DCD-DUT [Acetivibrio thermocellus ATCC 27405] Sequence ID: A3DFH7.1 Length: 178 Range 1: 54 to 168 Score:51.2 bits(121), Expect:4e-06, Method:Compositional matrix adjust., Identities:28/115(24%), Positives:54/115(46%), Gaps:1/115(0%) Query 557 EEDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAKGVFTQ-GGIID 615 E++ Y I + + P Q L + A + +SS+ G+F Q G +D Sbjct 54 EKEVKYKTITSDTYILLPNQFVLATTMEYFELPNNLTAFVEGRSSLGRLGLFIQNAGWVD 113 Query 616 SGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKG 670 G++G+I + ++N+N+ A+ + GR+ QL+ L P+ + ++G G Sbjct 114 PGFKGEITLELFNANRCAIELKAGRRVGQLVFAKMDDTALNPYKGKYQGQKGATG 168 >RecName: Full=Ribonuclease H; Short=RNase H [Novosphingobium aromaticivorans DSM 12444] Sequence ID: Q2G9E3.1 Length: 143 Range 1: 7 to 142 Score:50.1 bits(118), Expect:4e-06, Method:Compositional matrix adjust., Identities:44/137(32%), Positives:67/137(48%), Gaps:21/137(15%) Query 430 YTDGGKKNKVGSLGF--IVSTGEKFRK----HEEGTNQQLELRAI---EEALKQGPQTMN 480 +TDG K G G+ ++ GE ++ +E TN ++EL A EALKQ P + Sbjct 7 FTDGACKGNPGKGGWGALLRMGEHEKEMAGSEKETTNNRMELMAAIRALEALKQ-PCRVT 65 Query 481 LVTDSRYAFEFLLR--------NW---DEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKG 529 L TDS+Y + + + W D + +KN R + A + ++ WV GH G Sbjct 66 LHTDSKYVLDGITKWIFGWQKKGWKTADNKPVKNEDLWRALVDAVRPHKVEWVWVKGHDG 125 Query 530 IPQNEEIDKYISEIFLA 546 P+NE +DK S+ LA Sbjct 126 HPENERVDKLASDAALA 142 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Francisella tularensis subsp. novicida U112] Sequence ID: A0Q4H7.1 Length: 148 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Francisella tularensis subsp. tularensis WY96-3418] Sequence ID: A4IZU0.1 Length: 148 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Francisella tularensis subsp. mediasiatica FSC147] Sequence ID: B2SDZ1.1 Length: 148 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Francisella tularensis subsp. tularensis FSC198] Sequence ID: Q14JC6.1 Length: 148 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Francisella tularensis subsp. tularensis SCHU S4] Sequence ID: Q5NHX4.1 Length: 148 Range 1: 35 to 148 Score:50.4 bits(119), Expect:4e-06, Method:Composition-based stats., Identities:32/114(28%), Positives:59/114(51%), Gaps:5/114(4%) Query 568 EEVTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GIIDSGYQGQIQ 623 E + ++ G+ K + + +N+ +A MI +S + K G G+IDS YQG++ Sbjct 35 ESIYLKSGECKLVATGIAINIANPNYAAMILPRSGLGHKKGLVLGNGTGLIDSDYQGELM 94 Query 624 VIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGE-SRKTERGEKGFGSTGM 676 V +N ++ + I +FAQL+++ E + S+++ R GFG TG+ Sbjct 95 VSCFNRSQETIEIEPLMRFAQLVIVPVVQANFEIVEDFSQQSVRATGGFGHTGV 148 >RecName: Full=Polyprotein P3; Includes: RecName: Full=Putative movement protein; Short=MP; Includes: RecName: Full=Capsid protein; AltName: Full=Coat protein; Short=CP; Includes: RecName: Full=Protease; Short=PR; Includes: RecName: Full=Reverse transcriptase; Short=RT; Includes: RecName: Full=Ribonuclease H [Commelina yellow mottle virus] Sequence ID: P19199.2 Length: 1886 Range 1: 1457 to 1630 Score:53.9 bits(128), Expect:5e-06, Method:Compositional matrix adjust., Identities:48/190(25%), Positives:84/190(44%), Gaps:21/190(11%) Query 59 KKKSGKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKK----KHVTILDIGDAYFTIPL 114 K+K GK RM+ +++ LN+ TE Q LP + K K + D+ ++ + + Sbjct 1457 KEKKGKERMVFNYKLLNENTES---DQYSLPGINTIISKVGRSKIYSKFDLKSGFWQVAM 1513 Query 115 YEPYREYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQF 174 E +T F L K Y W V+P G K +P+++Q M + + E Sbjct 1514 EEESVPWTAF-------LAGNKLYEWLVMPFGLKNAPAIFQRKMDNVF-----KGTEKFI 1561 Query 175 GIYMDDIYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYP-AKWLGFELHPQTW 233 +Y+DDI + S+ ++H + + + + G L K + G P +LG L Sbjct 1562 AVYIDDILVFSET-AEQHSQHLYTMLQLCKENGLILSPTKMKIGTPEIDFLGASLGCTKI 1620 Query 234 KFQKHTLPEL 243 K Q H + ++ Sbjct 1621 KLQPHIISKI 1630 >RecName: Full=Gag-Pro polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp21; Contains: RecName: Full=Protein p3; Contains: RecName: Full=Protein p8; Contains: RecName: Full=Protein n; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease [Mouse mammary tumor virus (STRAIN BR6)] Sequence ID: P10271.2 Length: 860 Range 1: 631 to 750 Score:53.1 bits(126), Expect:6e-06, Method:Compositional matrix adjust., Identities:43/126(34%), Positives:70/126(55%), Gaps:9/126(7%) Query 560 AGYDLICPEEV--TIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAKGVFTQGGIIDSG 617 AG DL +++ ++E G V +P ++ L + +I +SS KG+ G+IDS Sbjct 631 AGLDLSSQKDLILSLEDG-VSLVPTLVKGTLPEGTTGLIIGRSSNYKKGLEVLPGVIDSD 689 Query 618 YQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGSTG-M 676 +QG+I+V M + K AV+I +G + AQL+L+ K ERG +GFGST + Sbjct 690 FQGEIKV-MVKAAKNAVIIHKGERIAQLLLLPYLKLPN----PVIKEERGSEGFGSTSHV 744 Query 677 YWIENI 682 +W++ I Sbjct 745 HWVQEI 750 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Heliomicrobium modesticaldum Ice1] Sequence ID: B0TAH2.1 Length: 163 Range 1: 31 to 159 Score:50.1 bits(118), Expect:7e-06, Method:Composition-based stats., Identities:36/131(27%), Positives:62/131(47%), Gaps:6/131(4%) Query 550 EGILPKREEDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAK---G 606 + +LP+ D YD E + I PG+ + + + + + A + +S +A + Sbjct 31 DAVLPENASDPYYDHF--EAIRIFPGERILVRTGIAIQMGEGMEAQVRPRSGLALRHGIT 88 Query 607 VFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHG-KLEPWGESRKTE 665 + G +D+ Y G + VI+ N V I + + AQL+ H +LE +TE Sbjct 89 LLNSPGTVDADYTGDVGVILINLGDKHVDIRKKDRVAQLVFQPVFHQVELEERESLNETE 148 Query 666 RGEKGFGSTGM 676 RG+ GFG TG+ Sbjct 149 RGDGGFGHTGV 159 >RecName: Full=Gag-Pro polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp21; Contains: RecName: Full=Protein p3; Contains: RecName: Full=Protein p8; Contains: RecName: Full=Protein n; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease [Mouse mammary tumor virus (STRAIN C3H)] Sequence ID: Q9IZT2.1 Length: 860 Range 1: 631 to 750 Score:53.1 bits(126), Expect:7e-06, Method:Compositional matrix adjust., Identities:43/126(34%), Positives:70/126(55%), Gaps:9/126(7%) Query 560 AGYDLICPEEV--TIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAKGVFTQGGIIDSG 617 AG DL +++ ++E G V +P ++ L + +I +SS KG+ G+IDS Sbjct 631 AGLDLSSQKDLILSLEDG-VSLVPTLVKGTLPEGTTGLIIGRSSNYKKGLEVLPGVIDSD 689 Query 618 YQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGSTG-M 676 +QG+I+V M + K AV+I +G + AQL+L+ K ERG +GFGST + Sbjct 690 FQGEIKV-MVKAAKNAVIIHKGERIAQLLLLPYLKLPNPII----KEERGSEGFGSTSHV 744 Query 677 YWIENI 682 +W++ I Sbjct 745 HWVQEI 750 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Acinetobacter baumannii ATCC 17978] Sequence ID: A3M324.2 Length: 150 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Acinetobacter baumannii AYE] Sequence ID: B0V8Y8.1 Length: 150 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Acinetobacter baumannii SDF] Sequence ID: B0VTE5.1 Length: 150 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Acinetobacter baumannii ACICU] Sequence ID: B2HV28.1 Length: 150 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Acinetobacter baumannii AB307-0294] Sequence ID: B7GYK9.1 Length: 150 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Acinetobacter baumannii AB0057] Sequence ID: B7I7U2.1 Length: 150 Range 1: 27 to 148 Score:49.7 bits(117), Expect:8e-06, Method:Composition-based stats., Identities:39/122(32%), Positives:61/122(50%), Gaps:6/122(4%) Query 560 AGYDL-ICPEE-VTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL C +E + IEPGQ + + + + +A +I +S + K G G+ Sbjct 27 AGLDLRACLDEAIEIEPGQTVLVKTGMAIYIHDVNFAGLILPRSGLGHKHGIVLGNLVGL 86 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQG++ V ++N + + G + AQ +L+ + E E +T RG GFG Sbjct 87 IDSDYQGELMVSVWNRGQTTFRLEPGERLAQYVLVPVVQAEFEQVEEFEETLRGAGGFGH 146 Query 674 TG 675 TG Sbjct 147 TG 148 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Sequence ID: Q8RER7.1 Length: 146 Range 1: 12 to 145 Score:49.3 bits(116), Expect:8e-06, Method:Compositional matrix adjust., Identities:39/134(29%), Positives:66/134(49%), Gaps:8/134(5%) Query 550 EGI-LPKREED--AGYDLIC--PEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAA 604 EG+ LPK E + AG D+ E +T++ + +P L++ + + + +S +A Sbjct 12 EGVELPKYETEGSAGMDVRANIKESITLKSLERILVPTGLKVAIPEGYEIQVRPRSGLAI 71 Query 605 K---GVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGES 661 K + G +DS Y+G+++VI+ N + A I + Q +L + + E Sbjct 72 KHGITMLNTPGTVDSDYRGELKVIVVNLSNEAYTIEPNERIGQFVLNKIEQIEFVEVEEL 131 Query 662 RKTERGEKGFGSTG 675 TERGE GFG TG Sbjct 132 DSTERGESGFGHTG 145 >RecName: Full=Ribonuclease H; Short=RNase H [Psychromonas ingrahamii 37] Sequence ID: A1SS86.2 Length: 153 Range 1: 7 to 152 Score:49.3 bits(116), Expect:1e-05, Method:Compositional matrix adjust., Identities:43/153(28%), Positives:69/153(45%), Gaps:26/153(16%) Query 430 YTDGGKKNKVGSLGF--IVSTGEKFRKHEEG----TNQQLELRAIEEALKQ--GPQTMNL 481 +TDG G G+ ++ E ++ EG TN ++E+ A +AL+ P + L Sbjct 7 FTDGSCLGNPGPGGYGAVMIYNEHCKELSEGFLLTTNNRMEMLACIKALQSLTEPCEVEL 66 Query 482 VTDSRY---AFEFLLRNWDEEVIKNPIQA--------RIMEIAHKKDRIGVHWVPGHKGI 530 TDS+Y + NW + K +A + ++ A +K ++ HWV GH G Sbjct 67 TTDSQYVRQGITLWIHNWKKRGWKTAAKAPVKNVDLWKALDAAQEKHKVAWHWVKGHSGH 126 Query 531 PQNEEIDKYISEIFLAKEGEGILPKREEDAGYD 563 P+NE D LA+ P +ED GY+ Sbjct 127 PENERCDD------LARRAAENNPT-QEDIGYE 152 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Helicobacter hepaticus ATCC 51449] Sequence ID: Q7VJU0.1 Length: 158 Range 1: 25 to 146 Score:49.3 bits(116), Expect:1e-05, Method:Composition-based stats., Identities:33/122(27%), Positives:58/122(47%), Gaps:3/122(2%) Query 558 EDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMA---AKGVFTQGGII 614 + AG+DL E+ I+ + L ++ + +S +A V G I Sbjct 25 QAAGFDLHAVEDSLIKARDRGLVGTGLAFEIESGFEVQVRPRSGLALHNGVSVLNTPGTI 84 Query 615 DSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGST 674 DS Y+G+I+VI+ N + I +G + AQ ++ + E ++ RGE+GFGS+ Sbjct 85 DSDYRGEIKVILINHSNEDFHIHRGDRIAQAVVSEVTQAVFTEVQELGQSVRGERGFGSS 144 Query 675 GM 676 G+ Sbjct 145 GV 146 >RecName: Full=Ribonuclease H; Short=RNase H [Campylobacter concisus 13826] Sequence ID: A8Z6F7.1 Length: 144 Range 1: 5 to 129 Score:48.9 bits(115), Expect:1e-05, Method:Compositional matrix adjust., Identities:41/126(33%), Positives:60/126(47%), Gaps:16/126(12%) Query 428 TYYTDGGKKNKVGSLG--FIVSTGEKFRKHEEG----TNQQLELRAIEEALK--QGPQTM 479 T ++DG G+ G +I+ E +K G TN Q+EL+A LK + P + Sbjct 5 TLFSDGSCLGNPGAGGWAYILRYNEAQKKASGGEAYTTNNQMELKAAIMGLKALKEPCEV 64 Query 480 NLVTDSRYAFEFL---LRNWDEEVIKNPIQARI----MEIAHKKDRIGVHWVPGHKGIPQ 532 L TDS Y + L NW + KN + +EI+ K ++ WV GH G P+ Sbjct 65 RLFTDSSYVANSINEWLANWQKRNFKNVKNVELWQEYLEIS-KPHKVVASWVKGHAGHPE 123 Query 533 NEEIDK 538 NEE D+ Sbjct 124 NEECDQ 129 >RecName: Full=Gag-Pro polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp24; Contains: RecName: Full=Phosphorylated protein pp18; Contains: RecName: Full=p12; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease 17 kDa; Contains: RecName: Full=Protease 13 kDa; Contains: RecName: Full=G-patch peptide [Simian retrovirus 2] Sequence ID: P51518.2 Length: 908 Range 1: 643 to 761 Score:52.4 bits(124), Expect:1e-05, Method:Compositional matrix adjust., Identities:34/127(27%), Positives:61/127(48%), Gaps:12/127(9%) Query 560 AGYDLICPEEVTIEPGQ-VKCIPIELRLNLKKSQWAMIATKSSMAAKGVFTQGGIIDSGY 618 AG DL + P + + + L + + +I + S KG+ G+ID+ Y Sbjct 643 AGLDLCSTTHTVLTPEMGPQTLATGVYGPLPPNTFGLILGRGSTTVKGLQIYPGVIDNDY 702 Query 619 QGQIQVIMYNSNKIAVVIPQGRKFAQLILMD---KKHGKLEPWGESRKTERGEKGFGSTG 675 G+ +++ + I + IPQG + AQL+L+ H P+ RG+K FGS+ Sbjct 703 TGEFKIMARAISSI-ITIPQGERIAQLVLLPLLRTAHKIQHPY-------RGDKNFGSSD 754 Query 676 MYWIENI 682 ++W++ I Sbjct 755 IFWVQPI 761 >RecName: Full=Retrovirus-related Pol polyprotein from transposon 412; Includes: RecName: Full=Protease; Includes: RecName: Full=Reverse transcriptase; Includes: RecName: Full=Endonuclease [Drosophila melanogaster] Sequence ID: P10394.1 Length: 1237 Range 1: 338 to 478 Score:52.4 bits(124), Expect:1e-05, Method:Compositional matrix adjust., Identities:48/162(30%), Positives:77/162(47%), Gaps:31/162(19%) Query 32 IIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSG------KWRMLIDFRELNKQTEDLTEAQ 85 I DK+VE P N+P+ + KKS KWR++ID+R++NK+ L + Sbjct 338 IKDKIVE-------PSVSQYNSPLLLVPKKSSPNSDKKKWRLVIDYRQINKK---LLADK 387 Query 86 LGLPHPGG----LQKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPCKRYYWK 141 LP L + K+ + LD+ + I L E R+ T F+ + + Y + Sbjct 388 FPLPRIDDILDQLGRAKYFSCLDLMSGFHQIELDEGSRDITSFSTSNGS-------YRFT 440 Query 142 VLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 LP G K++P+ +Q M I I+ P F +YMDD+ + Sbjct 441 RLPFGLKIAPNSFQ-RMMTIAFSGIE--PSQAF-LYMDDLIV 478 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Methylococcus capsulatus str. Bath] Sequence ID: Q603M1.1 Length: 151 Range 1: 28 to 151 Score:48.9 bits(115), Expect:2e-05, Method:Composition-based stats., Identities:38/127(30%), Positives:63/127(49%), Gaps:12/127(9%) Query 560 AGYDL-ICPE-EVTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL C + + ++PG+ + IP +++ A ++ +S + K G G+ Sbjct 28 AGLDLRACLDASLVLQPGETRLIPTGFAIHIGDPDLAAVLLPRSGLGHKHGIVLGNLVGL 87 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLI---LMDKKHGKLEPWGESRKTERGEKG 670 IDS YQGQ+ V +N I G + AQ++ ++ ++E + ESR R E G Sbjct 88 IDSDYQGQVLVSCWNRGPEPFEIAVGERIAQMVFVPVVQVSFEQVEAFAESR---RAEGG 144 Query 671 FGSTGMY 677 FG TG + Sbjct 145 FGHTGRH 151 >RecName: Full=Ribonuclease H; Short=RNase H [Agrobacterium fabrum str. C58] Sequence ID: Q8UHA7.1 Length: 146 Range 1: 7 to 134 Score:48.5 bits(114), Expect:2e-05, Method:Compositional matrix adjust., Identities:38/128(30%), Positives:61/128(47%), Gaps:19/128(14%) Query 430 YTDGGKKNKVG--SLGFIVSTGEKFRKHEEG----TNQQLELRAIEEALK--QGPQTMNL 481 +TDG G G ++ GE ++ G TN ++EL A AL + P ++L Sbjct 7 FTDGACSGNPGPGGWGAVLRYGETEKELSGGEADTTNNRMELLAAISALNALKSPCEVDL 66 Query 482 VTDSRYA--------FEFLLRNW---DEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGI 530 TDS Y F + + W D + +KN + +E A ++ ++ +HWV GH G Sbjct 67 YTDSAYVKDGITKWIFGWKKKGWKTADNKPVKNVELWQALEAAQERHKVTLHWVKGHAGH 126 Query 531 PQNEEIDK 538 P+NE D+ Sbjct 127 PENERADE 134 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Aromatoleum aromaticum EbN1] Sequence ID: Q5P7Z9.1 Length: 149 Range 1: 38 to 149 Score:48.1 bits(113), Expect:2e-05, Method:Composition-based stats., Identities:36/112(32%), Positives:55/112(49%), Gaps:4/112(3%) Query 570 VTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GIIDSGYQGQIQVI 625 VT+ PG+ IP L ++L A M+ +S + K G G+IDS YQGQI V Sbjct 38 VTLHPGETTLIPSGLAIHLADPGLAAMVLPRSGLGHKHGIVLGNLVGLIDSDYQGQIFVS 97 Query 626 MYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGSTGMY 677 +N + + + AQL+++ E +++RG GFGSTG + Sbjct 98 AWNRGRETFTVQPMERIAQLVVVPVLQVGFNIVDEFPQSDRGAAGFGSTGKH 149 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Candidatus Blochmanniella pennsylvanica str. BPEN] Sequence ID: Q491W8.1 Length: 149 Range 1: 19 to 148 Score:48.1 bits(113), Expect:2e-05, Method:Composition-based stats., Identities:39/130(30%), Positives:64/130(49%), Gaps:8/130(6%) Query 553 LPK--REEDAGYDL-ICPEE-VTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGV 607 LPK AG DL C ++ +TI PG+ I + +++ ++ A +I +S + K Sbjct 19 LPKYATSGSAGLDLSACLDKPLTIYPGKTHLISTGIAIHISDTKIAGVILPRSGLGHKYG 78 Query 608 FTQG---GIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKT 664 G G+IDS YQG++ V ++N ++ G++ AQL+ M + T Sbjct 79 IVLGNLVGLIDSDYQGELIVSLWNRGPKKYIVYPGKRIAQLVFMPIIQVRFSIVKSFIPT 138 Query 665 ERGEKGFGST 674 ERG GFG + Sbjct 139 ERGPHGFGHS 148 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Dichelobacter nodosus VCS1703A] Sequence ID: A5EYG1.1 Length: 154 Range 1: 87 to 154 Score:48.1 bits(113), Expect:3e-05, Method:Composition-based stats., Identities:21/68(31%), Positives:40/68(58%), Gaps:2/68(2%) Query 612 GIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWG--ESRKTERGEK 669 G+IDS YQG++++ ++N ++ + G + AQL+ + +L P + +++ RG Sbjct 87 GLIDSDYQGELKIPLWNRSQTPYTVTLGERIAQLLFLPIAQAQLFPVESFDQKQSTRGSG 146 Query 670 GFGSTGMY 677 GFG TG + Sbjct 147 GFGHTGRF 154 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Azoarcus olearius] Sequence ID: A1K4K1.1 Length: 149 Range 1: 26 to 149 Score:48.1 bits(113), Expect:3e-05, Method:Composition-based stats., Identities:40/124(32%), Positives:61/124(49%), Gaps:6/124(4%) Query 560 AGYDL-ICPEE-VTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL C + V + PG+ +P L ++L A M+ +S + K G G+ Sbjct 26 AGLDLRACLDAPVLLHPGETTLVPSGLAIHLADPGLAAMVLPRSGLGHKHGIVLGNLVGL 85 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGS 673 IDS YQGQ+ V ++N + I + AQL+++ + +ERGE GFGS Sbjct 86 IDSDYQGQVFVSVWNRGRDVFTIQPMERIAQLVVVPVLQVGFNVVDDFAASERGEGGFGS 145 Query 674 TGMY 677 TG + Sbjct 146 TGKH 149 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Candidatus Blochmanniella floridana] Sequence ID: Q7VRK0.1 Length: 151 Range 1: 27 to 150 Score:48.1 bits(113), Expect:3e-05, Method:Composition-based stats., Identities:38/124(31%), Positives:65/124(52%), Gaps:9/124(7%) Query 560 AGYDLI-CPEE-VTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL+ C E+ V+I P + + IP + + ++ + A +I +S + G G+ Sbjct 27 AGLDLLACIEKPVSILPKETRLIPTGIAIYIEDIEVAGIILPRSGLGHYYGIVLGNTIGL 86 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKL---EPWGESRKTERGEKG 670 IDS YQG+I + ++N ++ G++ AQL+ + KL + + KT RG KG Sbjct 87 IDSDYQGEIMISLWNRGSNKFILYPGKRIAQLLFISILRVKLSLVKSFDPFMKTIRGVKG 146 Query 671 FGST 674 FG + Sbjct 147 FGHS 150 >RecName: Full=Enzymatic polyprotein; Includes: RecName: Full=Aspartic protease; Includes: RecName: Full=Endonuclease; Includes: RecName: Full=Reverse transcriptase [Soybean chlorotic mottle virus] Sequence ID: P15629.2 Length: 692 Range 1: 210 to 398 Score:50.8 bits(120), Expect:4e-05, Method:Compositional matrix adjust., Identities:54/210(26%), Positives:99/210(47%), Gaps:34/210(16%) Query 20 PLTEEKLKGLTEIIDKLVEEGKLGKA-PPHWTCNTPIFCIKK----KSGKWRMLIDFREL 74 P T ++ E + L+++G + ++ PH + P F ++ K GK RM+I+++++ Sbjct 210 PYTIRDVQEFKEECEDLLKKGLIRESQSPH---SAPAFYVENHNEIKRGKRRMVINYKKM 266 Query 75 NKQTEDLTEAQLG----LPHPGGLQKKKHVTI----LDIGDAYFTIPLYEPYREYTCFTL 126 N EA +G LP + +K ++ LD Y+ + L+E + T F+ Sbjct 267 N-------EATIGDSYKLPRKDFILEKIKGSLWFSSLDAKSGYYQLRLHENTKPLTAFSC 319 Query 127 LSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSD 186 P K Y W VL G K +PS+YQ M + L+ +H + Y+DDI I + Sbjct 320 ------PPQKHYEWNVLSFGLKQAPSIYQRFMDQSLKGL--EHICLA---YIDDILIFTK 368 Query 187 LEIKKHREIVKDLANYIAQYGFTLPEEKRQ 216 ++H V+ + I + G + ++K + Sbjct 369 GSKEQHVNDVRIVLQRIKEKGIIISKKKSK 398 >RecName: Full=Ribonuclease H; Short=RNase H [Rhizobium etli CFN 42] Sequence ID: Q2KBL2.1 Length: 151 Range 1: 7 to 133 Score:47.8 bits(112), Expect:4e-05, Method:Compositional matrix adjust., Identities:38/127(30%), Positives:60/127(47%), Gaps:19/127(14%) Query 430 YTDGGKKNKVG--SLGFIVSTGEKFRK----HEEGTNQQLELRAIEEALK--QGPQTMNL 481 +TDG G G ++ GE ++ E TN ++EL A AL+ + P ++L Sbjct 7 FTDGACSGNPGPGGWGAVLRYGEVEKELCGGEAETTNNRMELMAAISALQALKSPCEVDL 66 Query 482 VTDSRYA--------FEFLLRNW---DEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGI 530 TDS Y F + W D++ +KN + +E A + ++ +HWV GH G Sbjct 67 YTDSAYVKDGISKWIFGWKKNGWKTSDKKPVKNAELWQALEEARNRHKVTLHWVKGHAGH 126 Query 531 PQNEEID 537 P+NE D Sbjct 127 PENERAD 133 >RecName: Full=dCTP deaminase, dUMP-forming; AltName: Full=Bifunctional dCTP deaminase:dUTPase; AltName: Full=DCD-DUT [Halothermothrix orenii H 168] Sequence ID: B8D0W3.1 Length: 182 Range 1: 91 to 151 Score:47.8 bits(112), Expect:5e-05, Method:Compositional matrix adjust., Identities:23/61(38%), Positives:40/61(65%), Gaps:3/61(4%) Query 594 AMIATKSSMAAKGVFTQ-GGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLIL--MDK 650 A + +SS+ G+F Q G +D G++GQI + +YN+N++ + + GR+ QL+L MDK Sbjct 91 AFVEGRSSIGRMGLFIQNAGWVDPGFEGQITLELYNANRLPIKLTAGRRICQLVLARMDK 150 Query 651 K 651 + Sbjct 151 E 151 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Human alphaherpesvirus 1 strain 17] Sequence ID: P10234.1 Length: 371 Range 1: 206 to 371 Score:48.5 bits(114), Expect:1e-04, Method:Compositional matrix adjust., Identities:44/169(26%), Positives:68/169(40%), Gaps:42/169(24%) Query 547 KEGEGILPKREEDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAM--IATKSSMAA 604 +E LPKREEDAG+D++ VT+ + LR+ + A + +SS+ A Sbjct 206 REAIAFLPKREEDAGFDIVVRRPVTVPANGTTVVQPSLRMLHADAGPAACYVLGRSSLNA 265 Query 605 KGVFTQGGIIDSGYQGQI-QVIMYNSNKIAVVIPQGRKFAQLILM----------DKKHG 653 +G+ + G + ++YN + V + G K AQL++ D HG Sbjct 266 RGLLV---VPTRWLPGHVCAFVVYNLTGVPVTLEAGAKVAQLLVAGADALPWIPPDNFHG 322 Query 654 --------------KLEPW------------GESRKTERGEKGFGSTGM 676 EP E+ +ERG GFGSTG+ Sbjct 323 TKALRNYPRGVPDSTAEPRNPPLLVFTNEFDAEAPPSERGTGGFGSTGI 371 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Chlamydia caviae GPIC] Sequence ID: Q823Q9.1 Length: 147 Range 1: 32 to 145 Score:46.2 bits(108), Expect:1e-04, Method:Composition-based stats., Identities:29/114(25%), Positives:52/114(45%), Gaps:6/114(5%) Query 568 EEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAKG---VFTQGGIIDSGYQGQIQV 624 E + + PGQ IP +++ + + + +S +A K V G ID+ Y+G++ + Sbjct 32 EPIAVLPGQRVLIPTGIKMQIPQGYEVQVRPRSGLALKHGIMVVNSPGTIDADYRGEVCI 91 Query 625 IMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESR---KTERGEKGFGSTG 675 I+ N + +I + AQ ++ K + T RG +GFG TG Sbjct 92 ILANFGESTFIIEPKMRIAQAVVAPVVQAKFIVVDQEEGLTATSRGSRGFGHTG 145 >RecName: Full=Ribonuclease H; Short=RNase H [Bradyrhizobium sp. ORS 278] Sequence ID: A4Z216.1 Length: 154 Range 1: 8 to 142 Score:45.4 bits(106), Expect:2e-04, Method:Compositional matrix adjust., Identities:44/142(31%), Positives:70/142(49%), Gaps:27/142(19%) Query 428 TYYTDGGKKNKVG--SLGFIVSTGEKFRKHEEG----TNQQLELRAI---EEALKQGPQT 478 + +TDG G G I+ G+K ++ + G TN ++EL A EALK+ Q Sbjct 8 SIFTDGACSGNPGPGGWGAILRFGDKEKELKGGEPHTTNNRMELMAAISALEALKKSCQ- 66 Query 479 MNLVTDSRYAFEFL---LRNW--------DEEVIKNPIQARIMEIAHKKDRIGVHWVPGH 527 + L TDS+Y + + + W D++ +KN + ++ A K +I HWV GH Sbjct 67 VELYTDSQYVRQGITGWIHGWKRNGWKTADKKPVKNAELWQRLDAALKPHKINWHWVKGH 126 Query 528 KGIPQNEEIDKYISEIFLAKEG 549 G P+NE D+ LA++G Sbjct 127 AGHPENERADQ------LARDG 142 >RecName: Full=Ribonuclease H; Short=RNase H [Rhizobium johnstonii 3841] Sequence ID: Q1MKH6.1 Length: 151 Range 1: 42 to 134 Score:45.1 bits(105), Expect:3e-04, Method:Composition-based stats., Identities:30/93(32%), Positives:47/93(50%), Gaps:13/93(13%) Query 459 TNQQLELRAIEEALK--QGPQTMNLVTDSRYA--------FEFLLRNW---DEEVIKNPI 505 TN ++EL A AL + P ++L TDS Y F + W D++ +KN Sbjct 42 TNNRMELLAAISALSALKSPCEVDLYTDSAYVKDGISKWIFGWKKNGWKTADKKPVKNAE 101 Query 506 QARIMEIAHKKDRIGVHWVPGHKGIPQNEEIDK 538 + +E A + ++ +HWV GH G P+NE D+ Sbjct 102 LWQALEAARDRHKVTLHWVKGHAGHPENERADE 134 >RecName: Full=Ribonuclease H; Short=RNase H [Thiobacillus denitrificans ATCC 25259] Sequence ID: Q3SIB2.1 Length: 148 Range 1: 9 to 143 Score:44.7 bits(104), Expect:3e-04, Method:Compositional matrix adjust., Identities:43/137(31%), Positives:68/137(49%), Gaps:23/137(16%) Query 430 YTDGGKKNKVGSLGF---IVSTGEKFRKHEEG-----TNQQLELRAIEEALK--QGPQTM 479 Y+DG K G+ G+ +V+ G RK G TN ++E+ A+ AL+ + P T+ Sbjct 9 YSDGACKGNPGAGGWGALLVAGG--HRKEISGGEPNTTNNRMEMTAVIRALELLKRPSTV 66 Query 480 NLVTDSRYA----FEFL----LRNW---DEEVIKNPIQARIMEIAHKKDRIGVHWVPGHK 528 + TDS+Y E+L RNW D + +KN + ++ ++ RI WV GH Sbjct 67 EVHTDSQYVQKGVSEWLPGWKRRNWRTADGKPVKNQDLWQQLDALSQQHRIVWKWVRGHA 126 Query 529 GIPQNEEIDKYISEIFL 545 G P+NE D ++ L Sbjct 127 GHPENERADVLANQGVL 143 >RecName: Full=Ribonuclease H; Short=RNase H [Oleidesulfovibrio alaskensis G20] Sequence ID: Q30X61.1 Length: 154 Range 1: 42 to 154 Score:45.1 bits(105), Expect:4e-04, Method:Composition-based stats., Identities:35/117(30%), Positives:51/117(43%), Gaps:18/117(15%) Query 459 TNQQLELRAIEEALK--QGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKK 516 TN ++E+ A+ E L+ Q P T+NL TDS+Y + + W + +N + + K Sbjct 42 TNNRMEILAVIEGLEALQEPCTVNLYTDSQYVRNAVEKKWLDSWQRNGWKTAARKPVKNK 101 Query 517 DR------------IGVHWVPGHKGIPQNEEIDKYISEIFLAKEGEGILPKREEDAG 561 D + HWV GH G P+NE D I G LP + AG Sbjct 102 DLWLRLLPLLARHTVKFHWVRGHSGHPENELCDT----IARGHASRGGLPPDTQAAG 154 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Chlamydia abortus S26/3] Sequence ID: Q5L6D8.1 Length: 147 Range 1: 32 to 145 Score:44.7 bits(104), Expect:4e-04, Method:Composition-based stats., Identities:28/114(25%), Positives:51/114(44%), Gaps:6/114(5%) Query 568 EEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAKG---VFTQGGIIDSGYQGQIQV 624 E + + PGQ +P +++ + + + +S A K V G ID+ Y+G++ + Sbjct 32 EPMAVLPGQRVLVPTGIKMQIPQGYEVQVRPRSGFALKHGIMVVNSPGTIDADYRGEVCI 91 Query 625 IMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESR---KTERGEKGFGSTG 675 I+ N + +I + AQ ++ K + T RG +GFG TG Sbjct 92 ILANFGESTFIIEPKMRIAQAVVAPVVQAKFIAVDQEEGLTTTSRGSRGFGHTG 145 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Laribacter hongkongensis HLHK9] Sequence ID: C1D8V4.1 Length: 149 Range 1: 26 to 120 Score:44.3 bits(103), Expect:5e-04, Method:Composition-based stats., Identities:30/95(32%), Positives:49/95(51%), Gaps:6/95(6%) Query 560 AGYDL--ICPEEVTIEPGQVKCIPIELRLNLKKSQWA-MIATKSSMAAKGVFTQG---GI 613 AG DL E I PG+ + IP + L+L+ ++A MI +S + K G G+ Sbjct 26 AGLDLRAAIDAETEIRPGETRLIPTGIALHLEDPRYAAMILPRSGLGHKHGIVLGNLVGL 85 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILM 648 IDS YQGQ+ V ++N + + AQ++++ Sbjct 86 IDSDYQGQVFVSVWNRGHETFRLAPLDRIAQMVIV 120 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Picosynechococcus sp. PCC 7002] Sequence ID: B1XM22.1 Length: 142 Range 1: 12 to 136 Score:44.3 bits(103), Expect:5e-04, Method:Composition-based stats., Identities:36/125(29%), Positives:55/125(44%), Gaps:5/125(4%) Query 551 GILPK--REEDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAK--- 605 I+PK E D+G DL E V I P + I L + I +S +A K Sbjct 12 AIIPKYQHEGDSGVDLHAIEPVAIAPHKTALIKTGLAAEIPIGTELQIRPRSGLALKQSV 71 Query 606 GVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTE 665 V G ID+ Y+G+I VI+ N + + G + AQ++++ H + + T Sbjct 72 TVLNSPGTIDANYRGEIGVILINHSDTVFEVKAGMRIAQMVMVPVMHLDITVVDKVSDTS 131 Query 666 RGEKG 670 RG G Sbjct 132 RGTGG 136 >RecName: Full=Ribonuclease H; Short=RNase H [Campylobacter curvus 525.92] Sequence ID: A7H185.1 Length: 149 Range 1: 5 to 138 Score:43.9 bits(102), Expect:8e-04, Method:Composition-based stats., Identities:40/134(30%), Positives:58/134(43%), Gaps:19/134(14%) Query 428 TYYTDGGKKNKVGSLG--FIVSTGEKFRKHEEG----TNQQLELRAIEEALK--QGPQTM 479 T ++DG N G+ G +I+ +K G TN Q+EL A+ E LK + P + Sbjct 5 TLFSDGSCLNNPGAGGWAYILEFNGAVKKDSGGAAMTTNNQMELTAVIEGLKALKEPCEV 64 Query 480 NLVTDSRY---AFEFLLRNW--------DEEVIKNPIQARIMEIAHKKDRIGVHWVPGHK 528 L TDS Y A L W D++ +KN + + ++ W+ H Sbjct 65 RLFTDSSYVANAVNSWLDGWVKKNFIGSDKKPVKNIELWQEYLRVSRPHKVTASWIKAHN 124 Query 529 GIPQNEEIDKYISE 542 G PQNEE D E Sbjct 125 GHPQNEECDTMARE 138 >RecName: Full=Ribonuclease H; Short=RNase H [Brucella anthropi ATCC 49188] Sequence ID: A6WWG8.1 Length: 154 Range 1: 7 to 139 Score:43.9 bits(102), Expect:9e-04, Method:Compositional matrix adjust., Identities:42/139(30%), Positives:63/139(45%), Gaps:25/139(17%) Query 430 YTDGGKKNKVG--SLGFIVSTGEKFRKHEEG----TNQQLELRAIEEALK--QGPQTMNL 481 YTDG G G I+ + ++ + G TN ++EL A AL + P ++L Sbjct 7 YTDGACSGNPGPGGWGAILRWNDNVKELKGGEADTTNNRMELMAAISALSALKEPCEVDL 66 Query 482 VTDSRYA-------FEFLLRNWDEEVIKNPIQA----RIMEIAHKKDRIGVHWVPGHKGI 530 TDS Y E RN + K P++ + ++ A K ++ HWV GH G Sbjct 67 YTDSVYVRDGISGWIEGWKRNGWKTAAKKPVKNAELWQALDEARKPHKVNWHWVKGHAGH 126 Query 531 PQNEEIDKYISEIFLAKEG 549 P+NE D+ LA+EG Sbjct 127 PENERADE------LAREG 139 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Marek's disease herpesvirus type 1 strain MD5] Sequence ID: Q9E6M6.1 Length: 436 Range 1: 247 to 384 Score:45.1 bits(105), Expect:0.002, Method:Compositional matrix adjust., Identities:42/142(30%), Positives:65/142(45%), Gaps:12/142(8%) Query 524 VPGHKGIPQNEE---IDKYISEIF--LAKEGEGILPKREEDAGYDLICPEEVTIEPGQVK 578 V G K P E+ + Y S F L E PKR EDA YD+ P ++ + Sbjct 247 VLGLKDFPTAEDETFVRFYTSGQFATLIPFFETFTPKRTEDAAYDIAAPGDIRLGALSST 306 Query 579 CIPIELR-LNLKKSQWAMIATKSSMAAKGVFTQGGIIDSGY--QGQIQVIMYNSNKIAVV 635 I I+ R + + S I +SSM +G+ II S + + + + N ++ V+ Sbjct 307 TIMIQQRYVCMDDSVIPCIFGRSSMNLRGLI----IIPSRWLPNSWLTITICNLTEMTVM 362 Query 636 IPQGRKFAQLILMDKKHGKLEP 657 I G + AQL+L+D + L P Sbjct 363 IRCGDRIAQLLLVDHESATLIP 384 >RecName: Full=Ribonuclease H; Short=RNase H [Methylococcus capsulatus str. Bath] Sequence ID: Q60AW8.1 Length: 155 Range 1: 11 to 138 Score:43.1 bits(100), Expect:0.002, Method:Compositional matrix adjust., Identities:35/128(27%), Positives:60/128(46%), Gaps:19/128(14%) Query 430 YTDGGKKNKVG--SLGFIVSTGEKFRK----HEEGTNQQLELRAIEEALK--QGPQTMNL 481 YTDG + G G ++ G K R+ E TN ++EL A AL+ P + + Sbjct 11 YTDGACRGNPGPGGWGVLLRYGSKTREIYGGERETTNNRMELMAAIRALETLSRPCKVKI 70 Query 482 VTDSRYAFEFL---LRNWDEEVIKNPIQARIMEI--------AHKKDRIGVHWVPGHKGI 530 VTDS+Y + + + W++ K ++ + I A ++ ++ W+ GH G Sbjct 71 VTDSQYVKKGITEWVAQWEKRGWKTAGRSPVKNIDLWQRLIQAEQRHQVSWGWIKGHSGH 130 Query 531 PQNEEIDK 538 P+NE D+ Sbjct 131 PENEAADR 138 >RecName: Full=dCTP deaminase, dUMP-forming; AltName: Full=Bifunctional dCTP deaminase:dUTPase; AltName: Full=DCD-DUT [Hydrogenobaculum sp. Y04AAS1] Sequence ID: B4U7Y7.1 Length: 177 Range 1: 64 to 144 Score:43.1 bits(100), Expect:0.002, Method:Composition-based stats., Identities:23/81(28%), Positives:43/81(53%), Gaps:1/81(1%) Query 568 EEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAKGVFTQ-GGIIDSGYQGQIQVIM 626 E I PG+ + L + A + +SS+ G+F + G +D+G++GQI + + Sbjct 64 EYFIINPGEFLLASTMEYIKLPEFITAFVEGRSSLGRLGLFIENAGWVDAGFEGQITLEL 123 Query 627 YNSNKIAVVIPQGRKFAQLIL 647 YN+NK + + +G + QL+ Sbjct 124 YNANKYPIKLYKGMRICQLVF 144 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Chlamydia felis Fe/C-56] Sequence ID: Q253V7.1 Length: 147 Range 1: 32 to 145 Score:42.7 bits(99), Expect:0.002, Method:Composition-based stats., Identities:30/121(25%), Positives:56/121(46%), Gaps:20/121(16%) Query 568 EEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAKG---VFTQGGIIDSGYQGQIQV 624 E + + PGQ +P +++ + + + +S +A K V G ID+ Y+G++ + Sbjct 32 EPIAVLPGQRVLVPTGIKMQIPQGYEVQVRPRSGLALKHGIMVVNSPGTIDADYRGEVCI 91 Query 625 IMYNSNKIAVVI-PQGRKFA---------QLILMDKKHGKLEPWGESRKTERGEKGFGST 674 I+ N + +I P+ R + I++D++ G T RG +GFG T Sbjct 92 ILANFGESTFIIEPKMRVAQAVVAPVVQAKFIVVDQEEGL-------TTTSRGSRGFGHT 144 Query 675 G 675 G Sbjct 145 G 145 >RecName: Full=Enzymatic polyprotein; Includes: RecName: Full=Aspartic protease; Includes: RecName: Full=Endonuclease; Includes: RecName: Full=Reverse transcriptase [Cestrum yellow leaf curling virus] Sequence ID: Q7TD08.1 Length: 643 Range 1: 230 to 373 Score:44.7 bits(104), Expect:0.002, Method:Compositional matrix adjust., Identities:47/165(28%), Positives:73/165(44%), Gaps:29/165(17%) Query 36 LVEEGKLGKAPPHWTCNTPIFCIKK----KSGKWRMLIDFRELNKQTEDLTEAQLGLPHP 91 ++EE K PH + P F ++ K K RM+I+++ LNK T + A LP Sbjct 230 IIEESK----SPH---SAPAFYVENHNEIKRKKRRMVINYKALNKAT--IGNAH-KLPRI 279 Query 92 GGLQKKKH----VTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPCKRYYWKVLPQGW 147 + K + LD Y+ + L+ + T F+ P K Y W VLP G Sbjct 280 DSILTKVKGSNWFSTLDAKSGYWQLRLHPQSKPLTAFSC------PPQKHYQWNVLPFGL 333 Query 148 KLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKH 192 K +P +YQ M + LE E Y+DDI + ++ ++H Sbjct 334 KQAPGIYQNFMDKNLEGL-----ENFCLAYIDDILVFTNSSREEH 373 >RecName: Full=Ribonuclease H; Short=RNase H [Sulfurovum sp. NBC37-1] Sequence ID: A6QCI9.1 Length: 147 Range 1: 10 to 134 Score:42.4 bits(98), Expect:0.003, Method:Compositional matrix adjust., Identities:39/125(31%), Positives:57/125(45%), Gaps:14/125(11%) Query 428 TYYTDGGKKNKVGS------LGFIVSTGEKFRKHEEGTNQQLELRAIEEALK--QGPQTM 479 T Y+DG G L + S E F EE TN ++ELR + E LK + P + Sbjct 10 TLYSDGSSLGNPGPGGYGGILEYKGSRKEYFGGEEETTNNRMELRGVIEGLKLLKEPCDV 69 Query 480 NLVTDSRYAFEFL---LRNW---DEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQN 533 +V+DS Y + + L +W D + +KN + A + WV GH G P+N Sbjct 70 EVVSDSSYVVKAINEWLESWIRRDFKKVKNVDLWKAYIEAAAPHHVHGTWVRGHDGHPEN 129 Query 534 EEIDK 538 E D+ Sbjct 130 ERCDE 134 >RecName: Full=Ribonuclease H; Short=RNase H [Yersinia enterocolitica subsp. enterocolitica 8081] Sequence ID: A1JKB1.1 Length: 154 Range 1: 8 to 152 Score:42.4 bits(98), Expect:0.003, Method:Compositional matrix adjust., Identities:43/155(28%), Positives:70/155(45%), Gaps:31/155(20%) Query 430 YTDGGKKNKVGSLGFIVSTGEKFRKHEEG--------TNQQLELRAIEEALKQ--GPQTM 479 +TDG G G+ ++++HE+ TN ++EL A AL+ P + Sbjct 8 FTDGSCLGNPGPGGYGAIL--RYKQHEKTFSAGYFLTTNNRMELMAAIVALEALTSPCEV 65 Query 480 NLVTDSRYAFEFL---LRNW--------DEEVIKNPIQARIMEIAHKKDRIGVHWVPGHK 528 L TDS+Y + + + NW D + ++N + +++A + I WV GH Sbjct 66 TLSTDSQYVRQGITQWIHNWKKRGWKTTDRKPVRNVDLWQRLDLAIQTHVIQWEWVKGHA 125 Query 529 GIPQNEEIDKYISEIFLAKEGEGILPKREEDAGYD 563 G P+NE D+ LA+EG ED GY+ Sbjct 126 GHPENERCDE------LAREGAN--SPTLEDTGYN 152 >RecName: Full=Ribonuclease H; Short=RNase H [Sinorhizobium medicae WSM419] Sequence ID: A6U6V5.1 Length: 153 Range 1: 7 to 134 Score:42.4 bits(98), Expect:0.003, Method:Composition-based stats., Identities:36/128(28%), Positives:60/128(46%), Gaps:19/128(14%) Query 430 YTDGGKKNKVGSLGF--IVSTGEKFRK----HEEGTNQQLELRAIEEALK--QGPQTMNL 481 YTDG G G+ ++ G+ ++ E TN ++EL A AL + P ++L Sbjct 7 YTDGACSGNPGPGGWGAVLRYGDVEKEMSGGEAETTNNRMELLAAISALNALRQPCEVDL 66 Query 482 VTDSRYAFEFL---LRNW--------DEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGI 530 TDS+Y + + + W D + +KN + ++ A + + HWV GH G Sbjct 67 HTDSKYVMDGISKWIHGWKRNGWKTGDRKPVKNGELWQALDAARDRHNVTWHWVKGHAGH 126 Query 531 PQNEEIDK 538 P+NE D+ Sbjct 127 PENERADE 134 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Human herpesvirus 2 strain HG52] Sequence ID: P89469.1 Length: 369 Range 1: 205 to 304 Score:43.9 bits(102), Expect:0.003, Method:Compositional matrix adjust., Identities:29/102(28%), Positives:47/102(46%), Gaps:4/102(3%) Query 548 EGEGILPKREEDAGYDLICPEEVTIEPGQVKCIPIELRL--NLKKSQWAMIATKSSMAAK 605 E LPKREEDAG+D++ VT+ I LR+ + + +SS+ A+ Sbjct 205 EAPAFLPKREEDAGFDILIHRAVTVPANGATVIQPSLRVLRAADGPEACYVLGRSSLNAR 264 Query 606 GVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLIL 647 G+ SG+ ++ N + V + G K AQL++ Sbjct 265 GLLVMPTRWPSGH--ACAFVVCNLTGVPVTLQAGSKVAQLLV 304 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Equine herpesvirus type 4 (strain 1942)] Sequence ID: Q00030.1 Length: 326 Range 1: 172 to 326 Score:43.9 bits(102), Expect:0.003, Method:Compositional matrix adjust., Identities:43/159(27%), Positives:64/159(40%), Gaps:40/159(25%) Query 554 PKREEDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAM---IATKSSMAAKGVFTQ 610 PKR+EDAGYD+ TIEP + +EL + S A+ I +SSM +G+ Sbjct 172 PKRDEDAGYDISAQTNATIEPDESYF--VELPIVFSSSNPAVTPCIFGRSSMNRRGLIVL 229 Query 611 GGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWG----------- 659 +G ++ N NK V I +G++ AQL+L + L P Sbjct 230 PTRWVTGRTCCFFIL--NINKYPVYITKGQRVAQLVLTEDIDEALIPTNVNYNTPFPTYS 287 Query 660 ----------------------ESRKTERGEKGFGSTGM 676 ++ + R E GFGSTG+ Sbjct 288 PTGAVKHNPTPILWKFTEAFDHDAPSSARSEGGFGSTGL 326 >RecName: Full=dCTP deaminase, dUMP-forming; AltName: Full=Bifunctional dCTP deaminase:dUTPase; AltName: Full=DCD-DUT [Aquifex aeolicus VF5] Sequence ID: O67539.1 Length: 180 Range 1: 28 to 145 Score:42.4 bits(98), Expect:0.003, Method:Compositional matrix adjust., Identities:29/118(25%), Positives:57/118(48%), Gaps:2/118(1%) Query 532 QNEEIDKYISEIFLAKEGEGILPKREEDAGYDLICPEE-VTIEPGQVKCIPIELRLNLKK 590 Q +D + EGEG++ ++ G ++ EE I P Q ++L Sbjct 28 QCSSLDLRLGNQIALYEGEGVIDVKKGTKGVRILEFEEYFDIMPKQFLLATTLEYISLPP 87 Query 591 SQWAMIATKSSMAAKGVFTQ-GGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLIL 647 A + +SS+ G+F + G +D+G++GQI + ++N+N + + +G + QL+ Sbjct 88 YVTAFVEGRSSLGRLGLFIENAGWVDAGFEGQITLELFNANDRPIRLYRGMRICQLVF 145 >RecName: Full=Ribonuclease H; Short=RNase H [Brucella ovis ATCC 25840] Sequence ID: A5VP47.1 Length: 154 >RecName: Full=Ribonuclease H; Short=RNase H [Brucella suis ATCC 23445] Sequence ID: B0CKG2.1 Length: 154 >RecName: Full=Ribonuclease HI; Short=RNase HI [Brucella melitensis bv. 1 str. 16M] Sequence ID: P66673.1 Length: 154 >RecName: Full=Ribonuclease HI; Short=RNase HI [Brucella suis 1330] Sequence ID: P66674.1 Length: 154 >RecName: Full=Ribonuclease H; Short=RNase H [Brucella abortus 2308] Sequence ID: Q2YMI3.1 Length: 154 >RecName: Full=Ribonuclease H; Short=RNase H [Brucella abortus bv. 1 str. 9-941] Sequence ID: Q57EP4.1 Length: 154 Range 1: 7 to 133 Score:41.6 bits(96), Expect:0.005, Method:Compositional matrix adjust., Identities:39/127(31%), Positives:56/127(44%), Gaps:19/127(14%) Query 430 YTDGGKKNKVGSLGFIV----STGEKFRK--HEEGTNQQLELRAIEEALK--QGPQTMNL 481 YTDG G G+ + EK K E TN ++EL A AL + P ++L Sbjct 7 YTDGACSGNPGPGGWGALLRWNGNEKELKGGEAETTNNRMELMAAISALSALKEPCEVDL 66 Query 482 VTDSRYA-------FEFLLRNWDEEVIKNPIQA----RIMEIAHKKDRIGVHWVPGHKGI 530 TDS Y E RN + K P++ + ++ A K ++ HW+ GH G Sbjct 67 YTDSVYVRDGISGWIEGWKRNGWKTAAKKPVKNAELWQALDEARKAHKVTWHWIKGHAGH 126 Query 531 PQNEEID 537 P+NE D Sbjct 127 PENERAD 133 >RecName: Full=Ribonuclease H; Short=RNase H [Chelativorans sp. BNC1] Sequence ID: Q11KC5.1 Length: 162 Range 1: 33 to 133 Score:42.0 bits(97), Expect:0.005, Method:Composition-based stats., Identities:30/101(30%), Positives:50/101(49%), Gaps:13/101(12%) Query 450 EKFRKHEEGTNQQLELRAIEEALK--QGPQTMNLVTDSRYAFEFL-----------LRNW 496 E + + TN ++EL A EAL+ + P ++L TDS Y + + R Sbjct 33 ELYGGEADTTNNRMELTAAIEALEALKEPCEVDLHTDSNYLRDGISGWIEGWKRNGWRTA 92 Query 497 DEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQNEEID 537 D + +KN + ++ A ++ ++ HWV GH G P+NE D Sbjct 93 DRKPVKNAELWQALDEARRRHKVHWHWVRGHAGHPENERAD 133 >RecName: Full=dCTP deaminase, dUMP-forming; AltName: Full=Bifunctional dCTP deaminase:dUTPase; AltName: Full=DCD-DUT [Sulfurihydrogenibium sp. YO3AOP1] Sequence ID: B2V937.1 Length: 180 Range 1: 95 to 169 Score:42.0 bits(97), Expect:0.005, Method:Compositional matrix adjust., Identities:21/75(28%), Positives:40/75(53%), Gaps:1/75(1%) Query 594 AMIATKSSMAAKGVFTQ-GGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKH 652 A + +SS+ G+F + G +D+G++G I + YN+N I + I G + QL+ + Sbjct 95 AFVEGRSSLGRLGLFIENAGWVDAGFEGNITLEFYNANSIPIKIYPGMRICQLVFAKMED 154 Query 653 GKLEPWGESRKTERG 667 +P+ + +RG Sbjct 155 RSEKPYRGKYQGQRG 169 >RecName: Full=Ribonuclease H; Short=RNase H [Lachnoclostridium phytofermentans ISDg] Sequence ID: A9KLJ9.1 Length: 158 Range 1: 4 to 139 Score:41.6 bits(96), Expect:0.005, Method:Composition-based stats., Identities:43/137(31%), Positives:60/137(43%), Gaps:28/137(20%) Query 428 TYYTDG---GKKNKVGSLG----FIVSTG-EKFRKHEEG----TNQQLELRAI---EEAL 472 T YTDG G + G G +I STG E R++ G TN ++EL A EAL Sbjct 4 TIYTDGAARGNPDGPGGYGTILSYIDSTGVEHIREYSGGYKKTTNNRMELMAAIVGLEAL 63 Query 473 KQGPQTMNLVTDSRYAFEFLLRNW------------DEEVIKNPIQARIMEIAHKKDRIG 520 + P + L +DS+Y + +W E +KN + + A + + Sbjct 64 TK-PCVVTLYSDSQYVVKAFNEHWLDGWIKKGWKRGKNEPVKNVDLWKRLLAAKNQHDVT 122 Query 521 VHWVPGHKGIPQNEEID 537 WV GH G PQNE D Sbjct 123 FCWVKGHDGHPQNERCD 139 >RecName: Full=dCTP deaminase; AltName: Full=Deoxycytidine triphosphate deaminase [Pyrobaculum islandicum DSM 4184] Sequence ID: A1RVJ1.1 Length: 176 Range 1: 44 to 165 Score:41.6 bits(96), Expect:0.006, Method:Composition-based stats., Identities:31/127(24%), Positives:62/127(48%), Gaps:7/127(5%) Query 546 AKEGEGILPKREEDAG--YDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMA 603 A EG + P E+A + ++ +EV I P + E + + + +S++A Sbjct 44 AYEGAVVKPCELENARHLFRIVKADEVVIPPRNFVLLTTEEYVKMPDDVVGLANLRSTLA 103 Query 604 AKGVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRK 663 G+ ++D+G++G I + + N + +V+ +G +F LIL+ K G+ G Sbjct 104 RYGLVIPPTVVDAGFEGNITIEVVNESPNTIVLKRGMRFLHLILV-KAEGRALYSG---- 158 Query 664 TERGEKG 670 T +G++G Sbjct 159 TYQGQRG 165 >RecName: Full=Ribonuclease H; Short=RNase H [Sinorhizobium meliloti 1021] Sequence ID: Q92RG0.1 Length: 153 Range 1: 40 to 151 Score:41.2 bits(95), Expect:0.008, Method:Composition-based stats., Identities:36/118(31%), Positives:56/118(47%), Gaps:20/118(16%) Query 457 EGTNQQLELRAIEEALK--QGPQTMNLVTDSRYAFEFL---LRNW--------DEEVIKN 503 E TN ++EL A AL + P ++L TDS+Y + + + W D + +KN Sbjct 40 ETTNNRMELLAAISALNALRQPCEVDLHTDSKYVMDGISKWIHGWKRNGWKTGDRKPVKN 99 Query 504 PIQARIMEIAHKKDRIGVHWVPGHKGIPQNEEIDKYISEIFLAKEG-EGILPKREEDA 560 + ++ A + + HWV GH G P+NE D+ LA++G E R DA Sbjct 100 GELWQALDEARNRHNVTWHWVKGHAGHPENERADE------LARKGMEPFKKARRADA 151 >RecName: Full=Ribonuclease H; Short=RNase H [Paramagnetospirillum magneticum AMB-1] Sequence ID: Q2W9A9.1 Length: 154 Range 1: 49 to 153 Score:41.2 bits(95), Expect:0.008, Method:Composition-based stats., Identities:33/111(30%), Positives:55/111(49%), Gaps:19/111(17%) Query 459 TNQQLELRAIEEALKQGPQT--MNLVTDSRYAFEFL---LRNW--------DEEVIKNPI 505 TN ++E+ A+ AL ++ +++ TDS Y + + LR W D++ +KN Sbjct 49 TNNRMEMMAVLVALNTLTRSCAVDVYTDSEYVKKGMTEWLRGWKARGWKTADKKPVKNDD 108 Query 506 QARIMEIAHKKDRIGVHWVPGHKGIPQNEEIDKYISEIFLAKEGEGILPKR 556 + ++ A + ++ HWV GH G P+NE D LA+EG L R Sbjct 109 LWKALDEAAARHKVSWHWVKGHAGHPENERADA------LAREGIADLRAR 153 >RecName: Full=Ribonuclease H; Short=RNase H [Yersinia pestis Pestoides F] Sequence ID: A4TL54.1 Length: 154 >RecName: Full=Ribonuclease H; Short=RNase H [Yersinia pseudotuberculosis IP 31758] Sequence ID: A7FFK7.1 Length: 154 >RecName: Full=Ribonuclease H; Short=RNase H [Yersinia pestis Angola] Sequence ID: A9R0G0.1 Length: 154 >RecName: Full=Ribonuclease H; Short=RNase H [Yersinia pseudotuberculosis YPIII] Sequence ID: B1JR46.1 Length: 154 >RecName: Full=Ribonuclease H; Short=RNase H [Yersinia pseudotuberculosis PB1/+] Sequence ID: B2KAC9.1 Length: 154 >RecName: Full=Ribonuclease H; Short=RNase H [Yersinia pestis Antiqua] Sequence ID: Q1CAJ5.1 Length: 154 >RecName: Full=Ribonuclease H; Short=RNase H [Yersinia pestis Nepal516] Sequence ID: Q1CFI6.1 Length: 154 >RecName: Full=Ribonuclease H; Short=RNase H [Yersinia pseudotuberculosis IP 32953] Sequence ID: Q667M7.1 Length: 154 >RecName: Full=Ribonuclease HI; Short=RNase HI [Yersinia pestis] Sequence ID: Q8ZH30.1 Length: 154 Range 1: 8 to 152 Score:40.8 bits(94), Expect:0.008, Method:Compositional matrix adjust., Identities:41/155(26%), Positives:70/155(45%), Gaps:31/155(20%) Query 430 YTDGGKKNKVGSLGFIVSTGEKFRKHEEG--------TNQQLELRAIEEALKQ--GPQTM 479 +TDG G G+ ++++HE+ TN ++EL A AL+ P + Sbjct 8 FTDGSCLGNPGPGGYGAIL--RYKQHEKTFSAGYYLTTNNRMELMAAIVALEALTSPCEV 65 Query 480 NLVTDSRYAFEFL---LRNW--------DEEVIKNPIQARIMEIAHKKDRIGVHWVPGHK 528 L TDS+Y + + + NW D + ++N + +++A + I WV GH Sbjct 66 TLSTDSQYVRQGITQWIHNWKKRGWKTADRKPVRNVDLWQRLDLAIQSHTIQWEWVKGHA 125 Query 529 GIPQNEEIDKYISEIFLAKEGEGILPKREEDAGYD 563 G P+NE D+ LA++G +D GY+ Sbjct 126 GHPENERCDE------LARQGAN--SPTLDDTGYN 152 >RecName: Full=Ribonuclease H; Short=RNase H [Stutzerimonas stutzeri A1501] Sequence ID: A4VLR0.1 Length: 151 Range 1: 9 to 135 Score:40.4 bits(93), Expect:0.011, Method:Compositional matrix adjust., Identities:37/127(29%), Positives:56/127(44%), Gaps:19/127(14%) Query 430 YTDGGKKNKVGSLGFIVSTGEKFRKHE------EGTNQQLELRAIEEALKQ--GPQTMNL 481 YTDG K G G+ K K E + TN ++EL A AL + P + L Sbjct 9 YTDGACKGNPGPGGWGALLIYKGVKRELWGGEPDTTNNRMELMAAIRALAELKRPCKVRL 68 Query 482 VTDSRYAFEFL---LRNW--------DEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGI 530 VTDS+Y + + + NW ++ +KN + ++ + + WV GH G Sbjct 69 VTDSQYVMQGINDWMPNWKKRGWKTASKQPVKNADLWQQLDEQVNRHEVSWQWVRGHTGH 128 Query 531 PQNEEID 537 P NE+ D Sbjct 129 PGNEQAD 135 >RecName: Full=Ribonuclease H; Short=RNase H [Nitratidesulfovibrio vulgaris DP4] Sequence ID: A1VFS4.1 Length: 156 >RecName: Full=Ribonuclease H; Short=RNase H [Nitratidesulfovibrio vulgaris str. Hildenborough] Sequence ID: Q72E89.1 Length: 156 Range 1: 44 to 136 Score:40.0 bits(92), Expect:0.018, Method:Composition-based stats., Identities:28/94(30%), Positives:47/94(50%), Gaps:16/94(17%) Query 459 TNQQLELRAIEEALK--QGPQTMNLVTDSRYAFEFLLRNW------------DEEVIKN- 503 TN ++E+ A+ EAL+ + P + L TDS+Y + + W D++ +KN Sbjct 44 TNNRMEILAVLEALEALRDPCKVTLFTDSQYVRNAVEKKWLAGWQRNGWKTADKKPVKNR 103 Query 504 PIQARIMEIAHKKDRIGVHWVPGHKGIPQNEEID 537 + R++ + K + WV GH G P+NE D Sbjct 104 DLWERLVPLLAKHS-VSFRWVRGHSGHPENERCD 136 >RecName: Full=Ribonuclease H; Short=RNase H [Nitratidesulfovibrio vulgaris str. 'Miyazaki F'] Sequence ID: B8DIU7.1 Length: 156 Range 1: 44 to 136 Score:40.0 bits(92), Expect:0.019, Method:Composition-based stats., Identities:27/93(29%), Positives:45/93(48%), Gaps:14/93(15%) Query 459 TNQQLELRAIEEALK--QGPQTMNLVTDSRYAFEFLLRNW------------DEEVIKNP 504 TN ++E+ A+ EAL + P ++L TDS+Y + + W D++ +KN Sbjct 44 TNNRMEILAVIEALALLKEPCGVDLYTDSQYVRNAVEKKWLAGWRRNGWKTSDKKPVKNR 103 Query 505 IQARIMEIAHKKDRIGVHWVPGHKGIPQNEEID 537 ++ ++ HWV GH G P+NE D Sbjct 104 DLWERLQPLLDLHQVRFHWVRGHSGHPENERCD 136 >RecName: Full=Ribonuclease H; Short=RNase H [Saccharopolyspora erythraea NRRL 2338] Sequence ID: A4FMU3.1 Length: 155 Range 1: 14 to 143 Score:39.7 bits(91), Expect:0.021, Method:Compositional matrix adjust., Identities:38/130(29%), Positives:55/130(42%), Gaps:21/130(16%) Query 430 YTDGGKKNKVG--SLGFIVSTGEKFRKHEEG----TNQQLELRAIEEALKQGPQTMNLV- 482 YTDG G G ++ G R+ G TN ++EL A+ E L + + LV Sbjct 14 YTDGACSGNPGPGGWGVVLRYGHHEREMYGGETATTNNKMELTAVIEGLAALTRPVPLVR 73 Query 483 --TDSRYAFEFL---LRNWDEE----VIKNPIQA-----RIMEIAHKKDRIGVHWVPGHK 528 TDS Y + + +R W K P++ R+ + + I WV GH Sbjct 74 IHTDSTYVLKGITEWMRGWKRNGWLTSAKQPVKNADLWRRLDQECGRHGEITWEWVKGHA 133 Query 529 GIPQNEEIDK 538 G P+NE DK Sbjct 134 GHPENERADK 143 >RecName: Full=Ribonuclease H; Short=RNase H [Syntrophobacter fumaroxidans MPOB] Sequence ID: A0LGJ7.1 Length: 164 Range 1: 20 to 146 Score:40.0 bits(92), Expect:0.022, Method:Compositional matrix adjust., Identities:35/131(27%), Positives:53/131(40%), Gaps:27/131(20%) Query 430 YTDGGKKNKVGSLGFIVSTGEKFRKH----------EEGTNQQLELRAIEEALK--QGPQ 477 + DG + G G+ G R H E TN Q+EL A+ +AL+ + P Sbjct 20 FADGACRGNPGPGGW----GAVLRYHGKEKELSGYAEYTTNNQMELAAVIQALRALKEPC 75 Query 478 TMNLVTDSRY---AFEFLLRNWDEEVIKNPIQARI--------MEIAHKKDRIGVHWVPG 526 + + TDSRY + W + K ++ + ++ A I WV G Sbjct 76 RVTITTDSRYLRDGISLWIHKWKQNGWKTRVKTDVRNKELWIALDEACLPHEIDWQWVKG 135 Query 527 HKGIPQNEEID 537 H G P+NE D Sbjct 136 HSGHPENERCD 146 >RecName: Full=Ribonuclease H; Short=RNase H [Pectobacterium carotovorum subsp. carotovorum PC1] Sequence ID: C6DC65.1 Length: 154 Range 1: 8 to 151 Score:39.7 bits(91), Expect:0.022, Method:Compositional matrix adjust., Identities:41/154(27%), Positives:69/154(44%), Gaps:31/154(20%) Query 430 YTDGGKKNKVGSLGFIVSTGEKFRKHEE--------GTNQQLELRAIEEALKQGPQTMNL 481 +TDG G G+ ++++HE+ TN ++EL A AL+ ++ Sbjct 8 FTDGSCLGNPGPGGYGALL--RYKQHEKPLSAGYRLTTNNRMELMAAIAALETLTTECDV 65 Query 482 V--TDSRYAFEFL---LRNW--------DEEVIKNPIQARIMEIAHKKDRIGVHWVPGHK 528 V TDS+Y + + + NW D++ +KN + ++ A ++ + WV GH Sbjct 66 VLCTDSQYVRQGITSWIHNWKKRGWKTADKKPVKNVDLWQRLDTAIQRHSVRWEWVKGHA 125 Query 529 GIPQNEEIDKYISEIFLAKEGEGILPKREEDAGY 562 G P+NE D E+ A G L +D GY Sbjct 126 GHPENERCD----ELARAAAGAPTL----DDTGY 151 >RecName: Full=Ribonuclease H; Short=RNase H [Tolumonas auensis DSM 9187] Sequence ID: C4LC60.1 Length: 154 Range 1: 6 to 152 Score:39.3 bits(90), Expect:0.029, Method:Compositional matrix adjust., Identities:42/154(27%), Positives:65/154(42%), Gaps:26/154(16%) Query 428 TYYTDGGKKNKVGSLGFI-VSTGEKFRK-----HEEGTNQQLELRAIEEALKQ--GPQTM 479 T YTDG G G+ V ++ RK +E TN ++EL A L+ P + Sbjct 6 TLYTDGSCLGNPGPGGYAAVLIYKQHRKELAQGYELTTNNRMELMAAIAGLQSLSEPCQV 65 Query 480 NLVTDSRYAFEFL---LRNW--------DEEVIKNPIQARIMEIAHKKDRIGVHWVPGHK 528 L TDS+Y + + + W + E +KN +++ ++ + WV GH Sbjct 66 RLTTDSQYVRQGITQWIHGWKKKGWKTANREPVKNVDLWLLLDSEIQRHDVEWFWVKGHS 125 Query 529 GIPQNEEIDKYISEIFLAKEGEGILPKREEDAGY 562 G P+NE D+ LA R D+GY Sbjct 126 GHPENERCDELARNAALAD-------SRLIDSGY 152 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Buchnera aphidicola str. Sg (Schizaphis graminum)] Sequence ID: Q8K921.1 Length: 159 Range 1: 3 to 158 Score:39.3 bits(90), Expect:0.033, Method:Composition-based stats., Identities:43/186(23%), Positives:76/186(40%), Gaps:37/186(19%) Query 498 EEVIKNPIQARIMEIAHKKDR---IGVHWVPGHKGIPQNEEIDKYISEIFLAKEGEGILP 554 + +I N I+ RI++ KK+ + + PG G+ I K IS LP Sbjct 3 KHLINNNIKIRILDSNIKKNSSFFLPQYATPGSSGLDLRASIKKKIS-----------LP 51 Query 555 KREEDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQ-WAMIATKSSMAAKGVFTQG-- 611 +E V +P + +++ A++ +S + K G Sbjct 52 SKE-------------------VILVPTGIAIHIDNPYITALVLPRSGLGHKNGIILGNL 92 Query 612 -GIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKG 670 G+IDS YQG++ + ++N +K I + AQ+I + + +T R KG Sbjct 93 IGLIDSDYQGELMISLWNRSKNIFFINPYDRIAQMIFVPIIRPTFSIVDDFEETVRFGKG 152 Query 671 FGSTGM 676 FG +G+ Sbjct 153 FGHSGV 158 >RecName: Full=dCTP deaminase, dUMP-forming; AltName: Full=Bifunctional dCTP deaminase:dUTPase; AltName: Full=DCD-DUT [Persephonella marina EX-H1] Sequence ID: C0QRW3.1 Length: 180 Range 1: 69 to 176 Score:39.7 bits(91), Expect:0.033, Method:Compositional matrix adjust., Identities:26/111(23%), Positives:51/111(45%), Gaps:4/111(3%) Query 568 EEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAKGVFTQ-GGIIDSGYQGQIQVIM 626 E I+P Q + L A + +SS+ G+F + G +D+G++G I + Sbjct 69 EGFIIQPKQFILATTREYIKLPDYLTAFVEGRSSLGRLGLFIENAGWVDAGFEGNITLEF 128 Query 627 YNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGSTGMY 677 YN+N + I G + QL+ + P+ R +G++G ++ ++ Sbjct 129 YNANSRPLKIYPGMRICQLVFAKMEEPAENPY---RGKYQGQRGTTASRIF 176 >RecName: Full=Ribonuclease H; Short=RNase H [Dechloromonas aromatica RCB] Sequence ID: Q47FN9.1 Length: 148 Range 1: 4 to 136 Score:38.9 bits(89), Expect:0.036, Method:Compositional matrix adjust., Identities:44/138(32%), Positives:66/138(47%), Gaps:26/138(18%) Query 421 EEVVEGPTYYTDGGKKNKVG--SLGFIVSTG----EKFRKHEEGTNQQLEL----RAIEE 470 EE VE +TDG K G G I+ G E + +E TN ++EL RAIE Sbjct 4 EETVE---IFTDGACKGNPGPGGWGAILRLGPHEKELWGGEKETTNNRMELTAAIRAIE- 59 Query 471 ALKQGPQTMNLVTDSRYAFEFL---LRNW--------DEEVIKNPIQARIMEIAHKKDRI 519 ALK+ P + TDS+Y + + + W D++ +KN ++++ K ++ Sbjct 60 ALKR-PIGGKIYTDSQYVMKGINEWIHGWKKNGWKTSDKKPVKNADLWQLLDAQVKLHKL 118 Query 520 GVHWVPGHKGIPQNEEID 537 WV GH G P+NE D Sbjct 119 EWIWVRGHSGHPENERAD 136 >RecName: Full=Ribonuclease H; Short=RNase H [Xanthomonas citri pv. citri str. 306] Sequence ID: Q8PNH8.1 Length: 150 Range 1: 42 to 145 Score:38.9 bits(89), Expect:0.039, Method:Composition-based stats., Identities:32/104(31%), Positives:48/104(46%), Gaps:13/104(12%) Query 459 TNQQLELRAIEEALKQ--GPQTMNLVTDSRYAFE--------FLLRNWDE---EVIKNPI 505 TN ++EL A AL+ P + L TDS+Y + ++ RNW + +KN Sbjct 42 TNNRMELMAAIMALETLTEPCQIVLHTDSQYVRQGITEWMPGWVRRNWKTAGCDPVKNRE 101 Query 506 QARIMEIAHKKDRIGVHWVPGHKGIPQNEEIDKYISEIFLAKEG 549 + A ++ RI WV GH G P NE +D +A+ G Sbjct 102 LWERLHAATQRHRIDWRWVKGHNGDPDNERVDVLARNQAIAQRG 145 >RecName: Full=Ribonuclease H; Short=RNase H [Dinoroseobacter shibae DFL 12 = DSM 16493] Sequence ID: A8LLC1.1 Length: 157 Range 1: 7 to 156 Score:38.9 bits(89), Expect:0.041, Method:Composition-based stats., Identities:44/156(28%), Positives:62/156(39%), Gaps:30/156(19%) Query 430 YTDGGKKNKVGSLGF----IVSTGEKFRKHE-------EGTNQQLELRAIEEALK--QGP 476 YTDG G G+ I G+ K E TN ++EL A AL+ + P Sbjct 7 YTDGACSGNPGPGGWGALLIARDGDTVVKERALKGGEAETTNNRMELLAAIHALEALERP 66 Query 477 QTMNLVTDSRYA-------FEFLLRNWDEEVIKNPIQA----RIMEIAHKKDRIGVHWVP 525 + +VTDS Y RN + K P++ R ++ A + + WV Sbjct 67 ARLTVVTDSAYVKGGVTGWIHGWKRNGWKTSTKKPVKNEDLWRRLDAAQARHEVQWEWVK 126 Query 526 GHKGIPQNEEIDKYISEIFLAKEGEGILPKREEDAG 561 GH G P+NE D LA+EG + AG Sbjct 127 GHAGHPENERADA------LAREGMAPFKPGKSKAG 156 >RecName: Full=dCTP deaminase; AltName: Full=Deoxycytidine triphosphate deaminase [Pyrobaculum aerophilum str. IM2] Sequence ID: Q8ZW23.1 Length: 176 Range 1: 44 to 147 Score:38.9 bits(89), Expect:0.049, Method:Composition-based stats., Identities:26/104(25%), Positives:48/104(46%), Gaps:2/104(1%) Query 546 AKEGEGILPKREEDAG--YDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMA 603 A EG I P E A + ++ +EV I P + E + + +S++A Sbjct 44 AYEGVVIKPCELESARHLFRVVKADEVVIPPRNFALLTTEEYVKMPDDVVGFANLRSTLA 103 Query 604 AKGVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLIL 647 G+ I+D+G++G I + + N +V+ +G +F L+L Sbjct 104 RYGLVIPPTIVDAGFEGNITIEVVNETPNTIVLRRGMRFLHLVL 147