RID: 3DKG75KS016 Job Title:POL_CAEVC P33459 Pol polyprotein (Protease)... Program: BLASTP Query: unnamed protein product ID: lcl|Query_10847675(amino acid) Length: 713 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Pol polyprotein; Contains: RecName: Full=Proteas... Caprine arth... NA 11661 1465 1465 100% 0.0 100.00 1109 P33459.1 RecName: Full=Pol polyprotein; Contains: RecName: Full=Proteas... Ovine lentiv... NA 11664 1256 1256 100% 0.0 83.45 1086 P16901.1 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Visna lentiv... NA 11743 1251 1251 100% 0.0 82.19 1506 P23426.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Visna/maedi ... NA 36374 1249 1249 100% 0.0 82.05 1506 P35956.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Visna lentiv... NA 11744 1248 1248 100% 0.0 81.91 1506 P23427.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Visna lentiv... NA 11742 1248 1248 100% 0.0 81.91 1506 P03370.2 RecName: Full=Pol polyprotein; Contains: RecName: Full=Proteas... Feline immun... NA 11675 529 529 100% 9e-175 43.29 1124 P19028.1 RecName: Full=Pol polyprotein; Contains: RecName: Full=Proteas... Feline immun... NA 31676 524 524 100% 8e-173 42.27 1124 P31822.1 RecName: Full=Pol polyprotein; Contains: RecName: Full=Proteas... Feline immun... NA 11674 522 522 100% 4e-172 42.74 1124 P16088.1 RecName: Full=Pol polyprotein; Contains: RecName: Full=Proteas... Equine infec... NA 31675 489 489 100% 2e-159 39.89 1146 P32542.1 RecName: Full=Pol polyprotein; Contains: RecName: Full=Proteas... Equine infec... NA 11670 489 489 100% 2e-159 39.89 1146 P11204.1 RecName: Full=Pol polyprotein; Contains: RecName: Full=Proteas... Equine infec... NA 11672 489 489 100% 3e-159 40.30 1145 P03371.1 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... SIVcpz EK505 NA 388912 380 380 75% 2e-116 42.44 1448 Q1A249.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11695 379 379 78% 7e-116 41.22 1432 P18802.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr170Gag-Pol;... Jembrana dis... NA 36370 379 379 98% 9e-116 34.99 1432 Q82851.1 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11699 376 376 78% 7e-115 41.04 1434 P20892.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11697 376 376 78% 9e-115 41.22 1440 P04588.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:F2_M... NA 388823 375 375 75% 2e-114 41.17 1434 Q9QBZ1.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:B_89.6 NA 401671 374 374 78% 4e-114 41.04 1435 Q73368.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11683 373 373 78% 1e-113 40.52 1436 P12499.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 362651 372 372 78% 2e-113 40.35 1435 P35963.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:H_VI991 NA 388888 372 372 75% 2e-113 41.06 1436 Q9Q720.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:B_AR... NA 11685 371 371 75% 7e-113 41.17 1437 P03369.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11688 371 371 75% 7e-113 40.98 1439 P20875.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11701 370 370 75% 8e-113 40.80 1436 P05959.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:F2_M... NA 388815 370 370 78% 9e-113 40.35 1430 Q9QBZ5.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:B_HXB2R NA 11706 370 370 75% 1e-112 41.35 1435 P04585.4 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:G_SE... NA 388824 370 370 78% 1e-112 40.24 1433 O89940.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11686 370 370 75% 1e-112 41.35 1447 P03367.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:B_MN NA 11696 370 370 75% 2e-112 40.98 1441 P05961.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11682 370 370 78% 2e-112 40.52 1447 P04587.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:H_90... NA 388826 369 369 78% 2e-112 40.17 1435 O93215.4 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 O_MVP5180 NA 388816 369 369 78% 3e-112 40.00 1446 Q79666.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 N_YBF30 NA 388818 369 369 75% 3e-112 40.50 1449 O91080.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 82834 369 369 75% 3e-112 41.35 1435 P0C6F2.1 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11678 369 369 75% 4e-112 41.35 1447 P03366.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11698 367 367 78% 1e-111 40.17 1435 P12497.4 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:C_92... NA 388812 367 367 78% 2e-111 41.22 1431 O12158.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:K_96... NA 388906 367 367 78% 2e-111 40.52 1430 Q9QBY3.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11703 367 367 75% 2e-111 40.98 1428 P24740.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:C_ET... NA 388796 366 366 78% 4e-111 40.45 1439 Q75002.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:K_97... NA 388907 366 366 78% 4e-111 40.17 1429 Q9QBZ9.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:J_SE... NA 388905 365 365 75% 1e-110 40.44 1432 Q9WC54.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:F1_9... NA 388814 364 364 78% 1e-110 39.83 1430 O89290.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11689 364 364 78% 2e-110 40.00 1435 P04589.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... SIVcpz MB66 NA 388911 363 363 78% 4e-110 40.00 1438 Q1A267.4 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 O_ANT70 NA 327105 362 362 78% 1e-109 40.00 1435 Q77373.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA 11732 362 362 79% 1e-109 39.32 1441 P22382.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:J_SE... NA 388904 361 361 78% 2e-109 40.00 1432 Q9WC63.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 N_YBF106 NA 388819 362 362 78% 2e-109 40.17 1449 Q9IDV9.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA 11734 358 358 79% 3e-108 41.07 1448 P05897.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:F1_V... NA 388813 356 356 78% 2e-107 39.93 1430 Q9QSR3.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... SIVcpz GAB1 NA 402771 355 355 75% 2e-107 40.98 1384 P17283.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:G_92... NA 388825 355 355 78% 2e-107 39.38 1435 O41798.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11718 355 355 79% 3e-107 40.69 1462 P12451.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA 11733 355 355 79% 3e-107 40.31 1448 P05896.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... SIVcpz TAN1 NA 388910 355 355 76% 4e-107 39.78 1462 Q8AII1.4 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr170Gag-Pol;... Bovine immun... NA 417296 352 352 98% 5e-106 34.98 1475 P19560.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA 11738 351 351 78% 8e-106 39.65 1449 P19505.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA 11737 351 351 78% 1e-105 39.30 1449 P12502.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11714 351 351 79% 2e-105 40.41 1550 P18096.4 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11713 350 350 78% 2e-105 39.86 1462 P17757.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11721 350 350 78% 2e-105 40.83 1463 P20876.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-2 B_EHO NA 388821 349 349 79% 5e-105 39.25 1464 Q89928.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11717 348 348 78% 8e-105 40.21 1464 P18042.4 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11719 348 348 78% 8e-105 40.24 1461 P05962.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11715 348 348 78% 1e-104 40.21 1462 P24107.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-2 B_UC1 NA 388822 347 347 79% 4e-104 39.21 1471 Q76634.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 73484 346 346 78% 6e-104 40.73 1463 Q74120.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11720 345 345 78% 1e-103 40.21 1464 P04584.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA 11727 335 335 76% 5e-100 39.10 1470 P27973.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA 31684 329 329 76% 9e-98 36.96 1472 Q02836.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11716 324 324 79% 3e-96 38.79 1465 P15833.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA 11730 317 317 77% 2e-93 36.94 1465 P27980.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA 11731 308 308 77% 2e-90 36.70 1467 P05895.2 RecName: Full=Intracisternal A-particle Pol-related polyprotei... Mouse intrac... NA 11753 170 170 73% 2e-44 26.98 867 P11368.1 RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName:... Jaagsiekte s... NA 11746 171 236 84% 3e-44 27.35 1726 P31623.2 RecName: Full=Intracisternal A-particle Pol-related polyprotei... Golden hamst... NA 11752 165 165 66% 1e-42 28.84 863 P04026.1 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Rous sarcoma... NA 269447 159 159 72% 1e-40 29.11 1603 O92956.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Avian leukos... NA 11864 157 157 72% 7e-40 29.04 1603 Q7SQ98.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Avian leukos... NA 363745 157 157 72% 7e-40 28.93 1603 Q04095.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Rous sarcoma... NA 11888 156 156 72% 1e-39 29.04 1603 P03354.2 RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName:... Mouse mammar... NA 11758 155 209 89% 4e-39 25.50 1755 P03365.3 RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName:... Mouse mammar... NA 11759 153 207 89% 2e-38 25.23 1755 P11283.2 RecName: Full=Gag-Pro-Pol polyprotein; AltName:... HTLV-3 strai... NA 402036 147 147 48% 1e-36 29.89 1440 Q0R5R2.3 RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName:... Squirrel mon... NA 11856 145 145 39% 5e-36 33.81 1880 P03364.3 RecName: Full=Gag-Pro-Pol polyprotein; AltName:... Human T-cell... NA 406769 145 145 48% 5e-36 29.23 1440 Q4U0X6.4 RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName:... Simian retro... NA 39068 140 193 58% 3e-34 31.19 1768 P51517.2 RecName: Full=Gag-Pro-Pol polyprotein; AltName: Full=Pr180;... Mason-Pfizer... NA 11855 135 196 61% 8e-33 30.46 1771 P07572.2 RecName: Full=Gag-Pro-Pol polyprotein; AltName:... Human T-lymp... NA 11909 131 131 48% 2e-31 28.00 1461 P03363.4 RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName:... Simian retro... NA 11942 130 193 58% 5e-31 31.79 1772 P04025.2 RecName: Full=Gag-Pro-Pol polyprotein; AltName:... Human T-cell... NA 11926 127 127 37% 3e-30 32.09 1462 P03362.3 RecName: Full=Gag-Pro-Pol polyprotein; AltName:... Human T-cell... NA 11927 126 126 37% 6e-30 31.44 1462 P14078.3 RecName: Full=Gag-Pro-Pol polyprotein; AltName:... HTLV-1 isola... NA 402046 126 126 37% 8e-30 31.82 1462 P0C211.2 RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName:... Bovine leuke... NA 11907 125 125 34% 9e-30 32.24 1416 P03361.2 RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName:... Bovine leuke... NA 11903 124 124 34% 3e-29 31.43 1416 P25059.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Walleye derm... NA 39720 93.2 93.2 28% 2e-19 32.21 1752 O92815.2 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Rabbitpox vi... NA 45417 84.0 84.0 19% 3e-19 34.07 147 Q6RZR1.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Monkeypox virus NA 10244 84.0 84.0 19% 4e-19 34.07 151 A0A7H0DN19.1 RecName: Full=Pro-Pol polyprotein; AltName: Full=Pr125Pol;... Human spumar... NA 11963 91.3 91.3 39% 5e-19 28.22 1143 P14350.2 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Vaccinia vir... NA 10249 83.6 83.6 19% 6e-19 34.07 147 P68634.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Vaccinia vir... NA 10254 83.6 83.6 19% 6e-19 34.07 147 P17374.2 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Cowpox virus... NA 265871 83.2 83.2 19% 7e-19 34.07 147 P87630.1 RecName: Full=Pro-Pol polyprotein; AltName: Full=Pr125Pol;... Pan troglody... NA 298339 90.1 90.1 40% 1e-18 27.61 1146 Q87040.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Variola viru... NA 587200 82.0 82.0 19% 1e-18 33.33 147 P0DSZ7.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Camelpox vir... NA 203172 80.9 80.9 19% 4e-18 33.33 147 Q775Z7.1 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Reticuloendo... NA 11636 86.7 86.7 30% 1e-17 28.83 1152 P03360.2 RecName: Full=Pol polyprotein; Contains: RecName: Full=Reverse... Feline endog... NA 11766 85.5 85.5 28% 3e-17 28.16 1046 P31792.1 RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contain... Moloney muri... NA 928306 85.1 85.1 28% 5e-17 28.64 1738 P03355.5 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... AKR (endogen... NA 11791 84.7 84.7 26% 7e-17 29.32 1734 P03356.3 RecName: Full=Pro-Pol polyprotein; AltName: Full=Pr125Pol;... Feline foamy... NA 53182 84.3 84.3 33% 7e-17 29.34 1156 O93209.1 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Friend murin... NA 11796 84.7 84.7 31% 7e-17 27.71 1739 P26810.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Friend murin... NA 11797 84.7 84.7 31% 7e-17 27.71 1738 P26809.2 RecName: Full=Gag-pol polyprotein; Contains: RecName:... Murine leuke... NA 31687 84.3 84.3 30% 9e-17 27.98 1734 Q7SVK7.2 RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contain... Xenotropic M... NA 373193 84.0 84.0 30% 1e-16 27.98 1733 A1Z651.1 RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contain... Xenotropic M... NA 356663 84.0 84.0 30% 1e-16 27.98 1733 Q2F7J3.1 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Friend murin... NA 11798 84.0 84.0 31% 1e-16 27.27 1738 P26808.2 RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contain... Xenotropic M... NA 356664 84.0 84.0 30% 1e-16 27.98 1733 Q2F7J0.1 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Baboon endog... NA 11764 83.2 83.2 30% 2e-16 28.44 1727 P10272.2 RecName: Full=Intracisternal A-particle Pol-related polyprotei... Mouse intrac... NA 11754 81.6 81.6 56% 4e-16 23.39 814 P12894.1 RecName: Full=Pro-Pol polyprotein; AltName: Full=Pr125Pol;... Macaque simi... NA 338478 80.9 80.9 32% 8e-16 29.06 1149 P23074.3 RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contain... Cas-Br-E mur... NA 11792 81.3 81.3 31% 8e-16 27.27 1733 P08361.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Radiation mu... NA 11787 79.7 79.7 28% 2e-15 27.67 1734 P11227.2 RecName: Full=Pro-Pol polyprotein; AltName: Full=Pr125Pol;... Simian foamy... NA 11644 79.7 79.7 30% 2e-15 28.24 1143 P27401.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Woolly monke... NA 11970 77.4 77.4 30% 1e-14 25.23 1687 P03359.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Feline leuke... NA 11768 76.3 76.3 25% 3e-14 27.81 1712 P10273.2 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Fowl aviaden... NA 66295 70.5 70.5 18% 3e-14 33.08 163 Q9YYS0.1 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr125Pol;... Koala retrov... NA 394239 75.9 75.9 30% 4e-14 25.23 1687 Q9TTC1.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Gibbon ape l... NA 11840 73.9 73.9 26% 1e-13 26.70 1686 P21414.2 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Fowl aviaden... NA 10553 67.4 67.4 16% 5e-13 33.05 178 Q89662.1 RecName: Full=Putative enzymatic polyprotein; Includes: RecNam... Cassava vein... NA 38062 65.5 65.5 36% 4e-11 27.76 652 Q89703.1 RecName: Full=Gag-Pro polyprotein; Contains: RecName:... Jaagsiekte s... NA 11746 65.1 65.1 17% 6e-11 31.45 866 P31625.3 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Swinepox vir... NA 10277 58.2 58.2 18% 3e-10 29.46 142 P32208.1 RecName: Full=Gag-Pro polyprotein; Contains: RecName:... Simian retro... NA 11942 62.4 62.4 19% 5e-10 29.20 912 P04024.2 RecName: Full=Enzymatic polyprotein; Includes: RecName:... Cauliflower ... NA 10648 62.0 62.0 35% 5e-10 27.34 679 P03554.1 RecName: Full=Enzymatic polyprotein; Includes: RecName:... Cauliflower ... NA 31556 62.0 62.0 35% 5e-10 27.73 679 Q02964.1 RecName: Full=Enzymatic polyprotein; Includes: RecName:... Cauliflower ... NA 10644 61.6 61.6 35% 6e-10 27.73 679 P03555.1 RecName: Full=Gag-Pro polyprotein; AltName: Full=Pr95; Contain... Mason-Pfizer... NA 11855 60.1 60.1 19% 2e-09 28.47 911 P07570.2 RecName: Full=Putative deoxyuridine 5'-triphosphate... Frog virus 3... NA 654924 55.8 55.8 19% 3e-09 25.56 164 Q6GZR2.1 RecName: Full=Enzymatic polyprotein; Includes: RecName:... Cauliflower ... NA 10645 58.9 58.9 35% 4e-09 26.95 674 P03556.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Paramecium b... NA 10506 54.7 54.7 13% 6e-09 31.52 141 O41033.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Yaba monkey ... NA 928314 54.3 54.3 20% 8e-09 26.21 143 Q6TUZ4.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Psittacid he... NA 670426 57.4 57.4 17% 8e-09 29.63 414 Q6UDM0.1 RecName: Full=Enzymatic polyprotein; Includes: RecName:... Figwort mosa... NA 10650 57.8 57.8 34% 1e-08 25.49 666 P09523.1 RecName: Full=Enzymatic polyprotein; Includes: RecName:... Cauliflower ... NA 31557 57.0 57.0 36% 2e-08 26.14 680 Q00962.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Suid herpesv... NA 33703 54.3 54.3 18% 4e-08 25.33 268 Q90030.1 RecName: Full=Polyprotein P3; Includes: RecName: Full=Putative... Commelina ye... NA 10653 53.9 53.9 26% 2e-07 25.26 1886 P19199.2 RecName: Full=Gag-Pro polyprotein; Contains: RecName:... Mouse mammar... NA 11758 53.1 53.1 17% 3e-07 34.13 860 P10271.2 RecName: Full=Gag-Pro polyprotein; Contains: RecName:... Mouse mammar... NA 11759 53.1 53.1 17% 3e-07 34.13 860 Q9IZT2.1 RecName: Full=Gag-Pro polyprotein; Contains: RecName:... Simian retro... NA 39068 52.4 52.4 17% 5e-07 26.77 908 P51518.2 RecName: Full=Enzymatic polyprotein; Includes: RecName:... Soybean chlo... NA 10651 50.8 50.8 28% 2e-06 25.71 692 P15629.2 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Human alphah... NA 10299 48.5 48.5 18% 5e-06 26.04 371 P10234.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Marek's dise... NA 10389 45.1 45.1 19% 6e-05 29.58 436 Q9E6M6.1 RecName: Full=Enzymatic polyprotein; Includes: RecName:... Cestrum yell... NA 175814 44.7 44.7 22% 1e-04 28.48 643 Q7TD08.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Human herpes... NA 10315 43.9 43.9 14% 1e-04 28.43 369 P89469.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Equine herpe... NA 10333 43.9 43.9 17% 1e-04 27.04 326 Q00030.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Human herpes... NA 868565 40.0 40.0 10% 0.002 32.43 295 Q2HR78.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Human herpes... NA 341980 38.5 38.5 17% 0.007 27.56 396 Q4JQW7.1 RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase... Human herpes... NA 10338 38.5 38.5 17% 0.007 27.56 396 P09254.1 Alignments: >RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Integrase; Short=IN [Caprine arthritis encephalitis virus strain Cork] Sequence ID: P33459.1 Length: 1109 Range 1: 153 to 865 Score:1465 bits(3792), Expect:0.0, Method:Compositional matrix adjust., Identities:713/713(100%), Positives:713/713(100%), Gaps:0/713(0%) Query 1 PITKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKK 60 PITKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKK Sbjct 153 PITKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKK 212 Query 61 KSGKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYRE 120 KSGKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYRE Sbjct 213 KSGKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYRE 272 Query 121 YTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDD 180 YTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDD Sbjct 273 YTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDD 332 Query 181 IYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTL 240 IYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTL Sbjct 333 IYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTL 392 Query 241 PELTKGTITLNKLQKLVGELVWRQSIIGKSIPNILKLMEGDRELQSERKIEEVHVKEWEA 300 PELTKGTITLNKLQKLVGELVWRQSIIGKSIPNILKLMEGDRELQSERKIEEVHVKEWEA Sbjct 393 PELTKGTITLNKLQKLVGELVWRQSIIGKSIPNILKLMEGDRELQSERKIEEVHVKEWEA 452 Query 301 CRKKLEEMEGNYYNKDKDVYGQLAWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIPQQVI 360 CRKKLEEMEGNYYNKDKDVYGQLAWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIPQQVI Sbjct 453 CRKKLEEMEGNYYNKDKDVYGQLAWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIPQQVI 512 Query 361 KAAQKLTQEVIIRTGKIPWILLPGKEEDWRLELQLGNITWMPKFWSCYRGHTRWRKRNII 420 KAAQKLTQEVIIRTGKIPWILLPGKEEDWRLELQLGNITWMPKFWSCYRGHTRWRKRNII Sbjct 513 KAAQKLTQEVIIRTGKIPWILLPGKEEDWRLELQLGNITWMPKFWSCYRGHTRWRKRNII 572 Query 421 EEVVEGPTYYTDGGKKNKVGSLGFIVSTGEKFRKHEEGTNQQLELRAIEEALKQGPQTMN 480 EEVVEGPTYYTDGGKKNKVGSLGFIVSTGEKFRKHEEGTNQQLELRAIEEALKQGPQTMN Sbjct 573 EEVVEGPTYYTDGGKKNKVGSLGFIVSTGEKFRKHEEGTNQQLELRAIEEALKQGPQTMN 632 Query 481 LVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQNEEIDKYI 540 LVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQNEEIDKYI Sbjct 633 LVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQNEEIDKYI 692 Query 541 SEIFLAKEGEGILPKREEDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKS 600 SEIFLAKEGEGILPKREEDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKS Sbjct 693 SEIFLAKEGEGILPKREEDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKS 752 Query 601 SMAAKGVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGE 660 SMAAKGVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGE Sbjct 753 SMAAKGVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGE 812 Query 661 SRKTERGEKGFGSTGMYWIENIPLAEEDHTKWHQDARSLHLEFEIPRTAAEDI 713 SRKTERGEKGFGSTGMYWIENIPLAEEDHTKWHQDARSLHLEFEIPRTAAEDI Sbjct 813 SRKTERGEKGFGSTGMYWIENIPLAEEDHTKWHQDARSLHLEFEIPRTAAEDI 865 >RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; Contains: RecName: Full=Integrase; Short=IN [Ovine lentivirus (strain SA-OMVV)] Sequence ID: P16901.1 Length: 1086 Range 1: 129 to 841 Score:1256 bits(3250), Expect:0.0, Method:Compositional matrix adjust., Identities:595/713(83%), Positives:651/713(91%), Gaps:0/713(0%) Query 1 PITKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKK 60 PIT+VKLKEGC GPH+ QWPLT+EKL+GL EI+DKL +EGK+G+APPHWTCNTPIFCIKK Sbjct 129 PITQVKLKEGCKGPHIAQWPLTQEKLEGLKEIVDKLEKEGKVGRAPPHWTCNTPIFCIKK 188 Query 61 KSGKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYRE 120 KSGKWRMLIDFRELNKQTEDL EAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYR Sbjct 189 KSGKWRMLIDFRELNKQTEDLAEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYRP 248 Query 121 YTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDD 180 YTCFT+LSPNNLGPC RYYWKVLPQGWKLSPSVYQFTMQEIL DWI +HP IQFGIYMDD Sbjct 249 YTCFTMLSPNNLGPCTRYYWKVLPQGWKLSPSVYQFTMQEILRDWIAKHPMIQFGIYMDD 308 Query 181 IYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTL 240 IYIGSDL+I KHREIV++LA+YIAQYGF LPEEKRQ+GYPAKWLGFELHP+ W+FQKHTL Sbjct 309 IYIGSDLDIMKHREIVEELASYIAQYGFMLPEEKRQEGYPAKWLGFELHPEKWRFQKHTL 368 Query 241 PELTKGTITLNKLQKLVGELVWRQSIIGKSIPNILKLMEGDRELQSERKIEEVHVKEWEA 300 PE+ +GTITLNKLQKLVG+LVWRQS+IGKSIPNILKLMEGDR LQSER+IE HVKEWE Sbjct 369 PEIKEGTITLNKLQKLVGDLVWRQSLIGKSIPNILKLMEGDRALQSERRIELRHVKEWEE 428 Query 301 CRKKLEEMEGNYYNKDKDVYGQLAWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIPQQVI 360 CR+KL EMEGNYY+++KDVYGQ+ WGDKAIEYIV+QE+GKPLWVNVVHNIKNLS QQ+I Sbjct 429 CRRKLAEMEGNYYDEEKDVYGQIDWGDKAIEYIVFQERGKPLWVNVVHNIKNLSQSQQII 488 Query 361 KAAQKLTQEVIIRTGKIPWILLPGKEEDWRLELQLGNITWMPKFWSCYRGHTRWRKRNII 420 KAAQKLTQEVIIR GKIPWILLPGKEEDW LELQ+GNITWMP FWSCYRG RW+KRN+I Sbjct 489 KAAQKLTQEVIIRIGKIPWILLPGKEEDWILELQIGNITWMPSFWSCYRGSIRWKKRNVI 548 Query 421 EEVVEGPTYYTDGGKKNKVGSLGFIVSTGEKFRKHEEGTNQQLELRAIEEALKQGPQTMN 480 EVVEGPTYYTDGGKKN GSLGFI STG KFRKHEEGTNQQLELRAIEEA KQGP+ MN Sbjct 549 TEVVEGPTYYTDGGKKNGKGSLGFIASTGVKFRKHEEGTNQQLELRAIEEACKQGPEKMN 608 Query 481 LVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQNEEIDKYI 540 +VTDSRYA+EF+ RNWDEEVIKNPIQARIM++ H K++IGVHWVPGHKGIPQNEEIDKYI Sbjct 609 IVTDSRYAYEFMRRNWDEEVIKNPIQARIMKLVHDKEQIGVHWVPGHKGIPQNEEIDKYI 668 Query 541 SEIFLAKEGEGILPKREEDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKS 600 SEIFLA+EG GILPKR EDAGYDLICP+EV I GQV+ IPI LR+NLK+ QWAM+ TKS Sbjct 669 SEIFLAREGSGILPKRAEDAGYDLICPQEVCIPAGQVRKIPINLRINLKEDQWAMVGTKS 728 Query 601 SMAAKGVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGE 660 S A+KGVF QGGIIDSGYQG IQV++YNSN V+IPQGRKFAQLILM H LE WGE Sbjct 729 SFASKGVFVQGGIIDSGYQGIIQVVVYNSNDKEVIIPQGRKFAQLILMPLIHEDLEAWGE 788 Query 661 SRKTERGEKGFGSTGMYWIENIPLAEEDHTKWHQDARSLHLEFEIPRTAAEDI 713 +R+TERG +GFGSTG YWIENIPLAEEDH+KWHQDA SLHL+F IPRTAAEDI Sbjct 789 TRRTERGNQGFGSTGAYWIENIPLAEEDHSKWHQDAGSLHLDFGIPRTAAEDI 841 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p16; Contains: RecName: Full=Capsid protein p25; Contains: RecName: Full=Nucleocapsid protein p14; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; Contains: RecName: Full=Integrase; Short=IN [Visna lentivirus (strain 1514 / clone LV1-1KS1)] Sequence ID: P23426.2 Length: 1506 Range 1: 549 to 1261 Score:1251 bits(3236), Expect:0.0, Method:Compositional matrix adjust., Identities:586/713(82%), Positives:654/713(91%), Gaps:0/713(0%) Query 1 PITKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKK 60 PIT+V+LKEGC GPH+ QWPLT+EKL+GL EI+D+L +EGK+G+APPHWTCNTPIFCIKK Sbjct 549 PITEVRLKEGCKGPHIAQWPLTQEKLEGLKEIVDRLEKEGKVGRAPPHWTCNTPIFCIKK 608 Query 61 KSGKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYRE 120 KSGKWRMLIDFRELNKQTEDL EAQLGLPHPGGLQ+KKHVTILDIGDAYFTIPLYEPYR+ Sbjct 609 KSGKWRMLIDFRELNKQTEDLAEAQLGLPHPGGLQRKKHVTILDIGDAYFTIPLYEPYRQ 668 Query 121 YTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDD 180 YTCFT+LSPNNLGPC RYYWKVLPQGWKLSPSVYQFTMQ+IL WI++HP IQFGIYMDD Sbjct 669 YTCFTMLSPNNLGPCVRYYWKVLPQGWKLSPSVYQFTMQKILRGWIEEHPMIQFGIYMDD 728 Query 181 IYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTL 240 IYIGSDL +++HR IV +LA+YIAQYGF LPE+KRQ+GYPAKWLGFELHP+ WKFQKHTL Sbjct 729 IYIGSDLGLEEHRGIVNELASYIAQYGFMLPEDKRQEGYPAKWLGFELHPEKWKFQKHTL 788 Query 241 PELTKGTITLNKLQKLVGELVWRQSIIGKSIPNILKLMEGDRELQSERKIEEVHVKEWEA 300 PE+T+G ITLNKLQKLVG+LVWRQS+IGKSIPNILKLMEGDR LQSER IE +HV+EWEA Sbjct 789 PEITEGPITLNKLQKLVGDLVWRQSLIGKSIPNILKLMEGDRALQSERYIESIHVREWEA 848 Query 301 CRKKLEEMEGNYYNKDKDVYGQLAWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIPQQVI 360 CR+KL+EMEGNYY+++KD+YGQL WG+KAIEYIV+QEKGKPLWVNVVH+IKNLS QQ+I Sbjct 849 CRQKLKEMEGNYYDEEKDIYGQLDWGNKAIEYIVFQEKGKPLWVNVVHSIKNLSQAQQII 908 Query 361 KAAQKLTQEVIIRTGKIPWILLPGKEEDWRLELQLGNITWMPKFWSCYRGHTRWRKRNII 420 KAAQKLTQEVIIRTGKIPWILLPG+EEDW LELQ+GNI WMP FWSCY+G RW+KRN+I Sbjct 909 KAAQKLTQEVIIRTGKIPWILLPGREEDWILELQMGNINWMPSFWSCYKGSVRWKKRNVI 968 Query 421 EEVVEGPTYYTDGGKKNKVGSLGFIVSTGEKFRKHEEGTNQQLELRAIEEALKQGPQTMN 480 EVV GPTYYTDGGKKN GSLG+I STGEKFR +EEGTNQQLELRAIEEA KQGP+ MN Sbjct 969 AEVVSGPTYYTDGGKKNGRGSLGYIASTGEKFRIYEEGTNQQLELRAIEEACKQGPEKMN 1028 Query 481 LVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQNEEIDKYI 540 +VTDSRYA+EF+LRNWDEEVI+NPIQARIME+ H K++IGVHWVPGHKGIPQNEEID+YI Sbjct 1029 IVTDSRYAYEFMLRNWDEEVIRNPIQARIMELMHNKEKIGVHWVPGHKGIPQNEEIDRYI 1088 Query 541 SEIFLAKEGEGILPKREEDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKS 600 SEIFLAKEG GIL KR EDAGYDLICP+E++I GQVK I I+L++NLKK QWAMI TKS Sbjct 1089 SEIFLAKEGRGILQKRAEDAGYDLICPQEISIPAGQVKRIAIDLKINLKKDQWAMIGTKS 1148 Query 601 SMAAKGVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGE 660 S A KGVF QGGIIDSGYQG IQV++YNSN VVIPQGRKFAQLILM H +LEPWGE Sbjct 1149 SFANKGVFVQGGIIDSGYQGTIQVVIYNSNNKEVVIPQGRKFAQLILMPLIHEELEPWGE 1208 Query 661 SRKTERGEKGFGSTGMYWIENIPLAEEDHTKWHQDARSLHLEFEIPRTAAEDI 713 +RKTERGE+GFGSTGMYWIENIPLAEE+H KWHQDA SLHLEF IPRTAAEDI Sbjct 1209 TRKTERGEQGFGSTGMYWIENIPLAEEEHNKWHQDAVSLHLEFGIPRTAAEDI 1261 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p16; Contains: RecName: Full=Capsid protein p25; Contains: RecName: Full=Nucleocapsid protein p14; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; Contains: RecName: Full=Integrase; Short=IN [Visna/maedi virus EV1 KV1772] Sequence ID: P35956.2 Length: 1506 Range 1: 549 to 1261 Score:1249 bits(3232), Expect:0.0, Method:Compositional matrix adjust., Identities:585/713(82%), Positives:653/713(91%), Gaps:0/713(0%) Query 1 PITKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKK 60 P T+V+LKEGC GPH+ QWPLT+EKL+GL EI+D+L +EGK+G+APPHWTCNTPIFCIKK Sbjct 549 PSTRVRLKEGCKGPHIAQWPLTQEKLEGLKEIVDRLEKEGKVGRAPPHWTCNTPIFCIKK 608 Query 61 KSGKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYRE 120 KSGKWRMLIDFRELNKQTEDL EAQLGLPHPGGLQ+KKHVTILDIGDAYFTIPLYEPYR+ Sbjct 609 KSGKWRMLIDFRELNKQTEDLAEAQLGLPHPGGLQRKKHVTILDIGDAYFTIPLYEPYRQ 668 Query 121 YTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDD 180 YTCFT+LSPNNLGPC RYYWKVLPQGWKLSP+VYQFTMQ+IL WI++HP IQFGIYMDD Sbjct 669 YTCFTMLSPNNLGPCVRYYWKVLPQGWKLSPAVYQFTMQKILRGWIEEHPMIQFGIYMDD 728 Query 181 IYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTL 240 IYIGSDL +++HR IV +LA+YIAQYGF LPE+KRQ+GYPAKWLGFELHP+ WKFQKHTL Sbjct 729 IYIGSDLGLEEHRGIVNELASYIAQYGFMLPEDKRQEGYPAKWLGFELHPEKWKFQKHTL 788 Query 241 PELTKGTITLNKLQKLVGELVWRQSIIGKSIPNILKLMEGDRELQSERKIEEVHVKEWEA 300 PE+T+G ITLNKLQKLVG+LVWRQS+IGKSIPNILKLMEGDR LQSER IE +HV+EWEA Sbjct 789 PEITEGPITLNKLQKLVGDLVWRQSLIGKSIPNILKLMEGDRALQSERYIESIHVREWEA 848 Query 301 CRKKLEEMEGNYYNKDKDVYGQLAWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIPQQVI 360 CR+KL+EMEGNYY+++KD+YGQL WG+KAIEYIV+QEKGKPLWVNVVH+IKNLS QQ+I Sbjct 849 CRQKLKEMEGNYYDEEKDIYGQLDWGNKAIEYIVFQEKGKPLWVNVVHSIKNLSQAQQII 908 Query 361 KAAQKLTQEVIIRTGKIPWILLPGKEEDWRLELQLGNITWMPKFWSCYRGHTRWRKRNII 420 KAAQKLTQEVIIRTGKIPWILLPG+EEDW LELQ+GNI WMP FWSCY+G RW+KRN+I Sbjct 909 KAAQKLTQEVIIRTGKIPWILLPGREEDWILELQMGNINWMPSFWSCYKGSVRWKKRNVI 968 Query 421 EEVVEGPTYYTDGGKKNKVGSLGFIVSTGEKFRKHEEGTNQQLELRAIEEALKQGPQTMN 480 EVV GPTYYTDGGKKN GSLG+I STGEKFR HEEGTNQQLELRAIEEA KQGP+ MN Sbjct 969 AEVVPGPTYYTDGGKKNGRGSLGYITSTGEKFRIHEEGTNQQLELRAIEEACKQGPEKMN 1028 Query 481 LVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQNEEIDKYI 540 +VTDSRYA+EF+LRNWDEEVI+NPIQARIME+ H K++IGVHWVPGHKGIPQNEEID+YI Sbjct 1029 IVTDSRYAYEFMLRNWDEEVIRNPIQARIMELVHNKEKIGVHWVPGHKGIPQNEEIDRYI 1088 Query 541 SEIFLAKEGEGILPKREEDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKS 600 SEIFLAKEG GIL KR EDAGYDLICP+E++I GQVK I I+L++NLKK QWAMI TKS Sbjct 1089 SEIFLAKEGRGILQKRAEDAGYDLICPQEISIPAGQVKRIAIDLKINLKKDQWAMIGTKS 1148 Query 601 SMAAKGVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGE 660 S A KGVF QGGIIDSGYQG IQV++YNSN VVIPQGRKFAQLILM H +LEPWGE Sbjct 1149 SFANKGVFVQGGIIDSGYQGTIQVVIYNSNNKEVVIPQGRKFAQLILMPLIHEELEPWGE 1208 Query 661 SRKTERGEKGFGSTGMYWIENIPLAEEDHTKWHQDARSLHLEFEIPRTAAEDI 713 +RKTERGE+GFGSTGMYWIENIPLAEE+H KWHQDA SLHLEF IPRTAAEDI Sbjct 1209 TRKTERGEQGFGSTGMYWIENIPLAEEEHNKWHQDAVSLHLEFGIPRTAAEDI 1261 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p16; Contains: RecName: Full=Capsid protein p25; Contains: RecName: Full=Nucleocapsid protein p14; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; Contains: RecName: Full=Integrase; Short=IN [Visna lentivirus (strain 1514 / clone LV1-1KS2)] Sequence ID: P23427.2 Length: 1506 Range 1: 549 to 1261 Score:1248 bits(3230), Expect:0.0, Method:Compositional matrix adjust., Identities:584/713(82%), Positives:653/713(91%), Gaps:0/713(0%) Query 1 PITKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKK 60 P T+V+LKEGC GPH+ QWPLT+EKL+GL EI+D+L +EGK+G+APPHWTCNTPIFCIKK Sbjct 549 PSTRVRLKEGCKGPHIAQWPLTQEKLEGLKEIVDRLEKEGKVGRAPPHWTCNTPIFCIKK 608 Query 61 KSGKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYRE 120 KSGKWRMLIDFRELNKQTEDL EAQLGLPHPGGLQ+KKHVTILDIGDAYFTIPLYEPYR+ Sbjct 609 KSGKWRMLIDFRELNKQTEDLAEAQLGLPHPGGLQRKKHVTILDIGDAYFTIPLYEPYRQ 668 Query 121 YTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDD 180 YTCFT+LSPNNLGPC RYYWKVLPQGWKLSP+VYQFTMQ+IL WI++HP IQFGIYMDD Sbjct 669 YTCFTMLSPNNLGPCVRYYWKVLPQGWKLSPAVYQFTMQKILRGWIEEHPMIQFGIYMDD 728 Query 181 IYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTL 240 IYIGSDL +++HR IV +LA+YIAQYGF LPE+KRQ+GYPAKWLGFELHP+ WKFQKHTL Sbjct 729 IYIGSDLGLEEHRGIVNELASYIAQYGFMLPEDKRQEGYPAKWLGFELHPEKWKFQKHTL 788 Query 241 PELTKGTITLNKLQKLVGELVWRQSIIGKSIPNILKLMEGDRELQSERKIEEVHVKEWEA 300 PE+T+G ITLNKLQKLVG+LVWRQS+IGKSIPNILKLMEGDR LQSER IE +HV+EWEA Sbjct 789 PEITEGPITLNKLQKLVGDLVWRQSLIGKSIPNILKLMEGDRALQSERYIESIHVREWEA 848 Query 301 CRKKLEEMEGNYYNKDKDVYGQLAWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIPQQVI 360 CR+KL+EMEGNYY+++KD+YGQL WG+KAIEYIV+QEKGKPLWVNVVH+IKNLS QQ+I Sbjct 849 CRQKLKEMEGNYYDEEKDIYGQLDWGNKAIEYIVFQEKGKPLWVNVVHSIKNLSQAQQII 908 Query 361 KAAQKLTQEVIIRTGKIPWILLPGKEEDWRLELQLGNITWMPKFWSCYRGHTRWRKRNII 420 KAAQKLTQEVIIRTGKIPWILLPG+EEDW LELQ+GNI WMP FWSCY+G RW+KRN+I Sbjct 909 KAAQKLTQEVIIRTGKIPWILLPGREEDWILELQMGNINWMPSFWSCYKGSVRWKKRNVI 968 Query 421 EEVVEGPTYYTDGGKKNKVGSLGFIVSTGEKFRKHEEGTNQQLELRAIEEALKQGPQTMN 480 EVV GPTYYTDGGKKN GSLG+I STGEKFR HEEGTNQQLELRAIEEA KQGP+ MN Sbjct 969 AEVVPGPTYYTDGGKKNGRGSLGYIASTGEKFRIHEEGTNQQLELRAIEEACKQGPEKMN 1028 Query 481 LVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQNEEIDKYI 540 +VTDSRYA+EF+LRNWDEEVI+NPIQARIME+ H K++IGVHWVPGHKGIPQNEEID+YI Sbjct 1029 IVTDSRYAYEFMLRNWDEEVIRNPIQARIMELVHNKEKIGVHWVPGHKGIPQNEEIDRYI 1088 Query 541 SEIFLAKEGEGILPKREEDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKS 600 SEIFLAKEG GIL KR EDAGYDLICP+E++I GQVK I I+L++NLKK QWAMI TKS Sbjct 1089 SEIFLAKEGRGILQKRAEDAGYDLICPQEISIPAGQVKRIAIDLKINLKKDQWAMIGTKS 1148 Query 601 SMAAKGVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGE 660 S A KGVF QGGIIDSGYQG IQV++YNSN VVIPQGRKFAQLILM H +L+PWGE Sbjct 1149 SFANKGVFVQGGIIDSGYQGTIQVVIYNSNNKEVVIPQGRKFAQLILMPLIHEELKPWGE 1208 Query 661 SRKTERGEKGFGSTGMYWIENIPLAEEDHTKWHQDARSLHLEFEIPRTAAEDI 713 +RKTERGE+GFGSTGMYWIENIPLAEE+H KWHQDA SLHLEF IPRTAAEDI Sbjct 1209 TRKTERGEQGFGSTGMYWIENIPLAEEEHNKWHQDAVSLHLEFGIPRTAAEDI 1261 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p16; Contains: RecName: Full=Capsid protein p25; Contains: RecName: Full=Nucleocapsid protein p14; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; Contains: RecName: Full=Integrase; Short=IN [Visna lentivirus (strain 1514)] Sequence ID: P03370.2 Length: 1506 Range 1: 549 to 1261 Score:1248 bits(3228), Expect:0.0, Method:Compositional matrix adjust., Identities:584/713(82%), Positives:653/713(91%), Gaps:0/713(0%) Query 1 PITKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKK 60 P T+V+LKEGC GPH+ QWPLT+EKL+GL EI+D+L +EGK+G+APPHWTCNTPIFCIKK Sbjct 549 PSTRVRLKEGCKGPHIAQWPLTQEKLEGLKEIVDRLEKEGKVGRAPPHWTCNTPIFCIKK 608 Query 61 KSGKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYRE 120 KSGKWRMLIDFRELNKQTEDL EAQLGLPHPGGLQ+KKHVTILDIGDAYFTIPLYEPYR+ Sbjct 609 KSGKWRMLIDFRELNKQTEDLAEAQLGLPHPGGLQRKKHVTILDIGDAYFTIPLYEPYRQ 668 Query 121 YTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDD 180 YTCFT+LSPNNLGPC RYYWKVLPQGWKLSP+VYQFTMQ+IL WI++HP IQFGIYMDD Sbjct 669 YTCFTMLSPNNLGPCVRYYWKVLPQGWKLSPAVYQFTMQKILRGWIEEHPMIQFGIYMDD 728 Query 181 IYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTL 240 IYIGSDL +++HR IV +LA+YIAQYGF LPE+KRQ+GYPAKWLGFELHP+ WKFQKHTL Sbjct 729 IYIGSDLGLEEHRGIVNELASYIAQYGFMLPEDKRQEGYPAKWLGFELHPEKWKFQKHTL 788 Query 241 PELTKGTITLNKLQKLVGELVWRQSIIGKSIPNILKLMEGDRELQSERKIEEVHVKEWEA 300 PE+T+G ITLNKLQKLVG+LVWRQS+IGKSIPNILKLMEGDR LQSER IE +HV+EWEA Sbjct 789 PEITEGPITLNKLQKLVGDLVWRQSLIGKSIPNILKLMEGDRALQSERYIESIHVREWEA 848 Query 301 CRKKLEEMEGNYYNKDKDVYGQLAWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIPQQVI 360 CR+KL+EMEGNYY+++KD+YGQL WG+KAIEYIV+QEKGKPLWVNVVH+IKNLS QQ+I Sbjct 849 CRQKLKEMEGNYYDEEKDIYGQLDWGNKAIEYIVFQEKGKPLWVNVVHSIKNLSQAQQII 908 Query 361 KAAQKLTQEVIIRTGKIPWILLPGKEEDWRLELQLGNITWMPKFWSCYRGHTRWRKRNII 420 KAAQKLTQEVIIRTGKIPWILLPG+EEDW LELQ+GNI WMP FWSCY+G RW+KRN+I Sbjct 909 KAAQKLTQEVIIRTGKIPWILLPGREEDWILELQMGNINWMPSFWSCYKGSVRWKKRNVI 968 Query 421 EEVVEGPTYYTDGGKKNKVGSLGFIVSTGEKFRKHEEGTNQQLELRAIEEALKQGPQTMN 480 E+V GPTYYTDGGKKN GSLG+I STGEKFR HEEGTNQQLELRAIEEA KQGP+ MN Sbjct 969 AELVPGPTYYTDGGKKNGRGSLGYIASTGEKFRIHEEGTNQQLELRAIEEACKQGPEKMN 1028 Query 481 LVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQNEEIDKYI 540 +VTDSRYA+EF+LRNWDEEVI+NPIQARIME+ H K++IGVHWVPGHKGIPQNEEID+YI Sbjct 1029 IVTDSRYAYEFMLRNWDEEVIRNPIQARIMELVHNKEKIGVHWVPGHKGIPQNEEIDRYI 1088 Query 541 SEIFLAKEGEGILPKREEDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKS 600 SEIFLAKEG GIL KR EDAGYDLICP+E++I GQVK I I+L++NLKK QWAMI TKS Sbjct 1089 SEIFLAKEGRGILQKRAEDAGYDLICPQEISIPAGQVKRIAIDLKINLKKDQWAMIGTKS 1148 Query 601 SMAAKGVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGE 660 S A KGVF QGGIIDSGYQG IQV++YNSN VVIPQGRKFAQLILM H +LEPWGE Sbjct 1149 SFANKGVFVQGGIIDSGYQGTIQVVIYNSNNKEVVIPQGRKFAQLILMPLIHEELEPWGE 1208 Query 661 SRKTERGEKGFGSTGMYWIENIPLAEEDHTKWHQDARSLHLEFEIPRTAAEDI 713 +RKTERGE+GFGSTGMYWIENIPLAEE+H KWHQDA SLHLEF IPRTAAEDI Sbjct 1209 TRKTERGEQGFGSTGMYWIENIPLAEEEHNKWHQDAVSLHLEFGIPRTAAEDI 1261 >RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; Contains: RecName: Full=Integrase; Short=IN [Feline immunodeficiency virus (isolate San Diego)] Sequence ID: P19028.1 Length: 1124 Range 1: 162 to 881 Score:529 bits(1362), Expect:9e-175, Method:Compositional matrix adjust., Identities:316/730(43%), Positives:449/730(61%), Gaps:27/730(3%) Query 1 PITKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKK 60 PI KVK+K+ GP + QWPL+ EK++ LTEI+++L EGK+ +A P+ NTP+F IKK Sbjct 162 PIVKVKMKDPNKGPQIKQWPLSNEKIEALTEIVERLEREGKVKRADPNNPWNTPVFAIKK 221 Query 61 KSGKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYRE 120 KSGKWRMLIDFRELNK TE E QLGLPHP GLQ KK +T+LDIGDAYFT PL Y Sbjct 222 KSGKWRMLIDFRELNKLTEKGAEVQLGLPHPAGLQMKKQITVLDIGDAYFTNPLDPDYAP 281 Query 121 YTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDD 180 YT FTL NN GP +R+ W LPQGW LSP +YQ T+ I++ +I+Q+P++ YMDD Sbjct 282 YTAFTLPRKNNAGPGRRFVWCSLPQGWILSPLIYQSTLDNIIQPFIRQNPQLDIYQYMDD 341 Query 181 IYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTL 240 IYIGS+L K+H+E V++L + +GF PE+K Q+ P KW+G+ELHP TW Q+ L Sbjct 342 IYIGSNLSKKEHKEKVEELRKLLLWWGFETPEDKLQEEPPYKWMGYELHPLTWTIQQKQL 401 Query 241 --PELTKGTITLNKLQKLVGELVW-RQSIIGKSIPNILKLMEGDRELQSERK-IEEVHVK 296 PE TLN+LQKL G++ W Q+I SI ++ + G++ L S R+ EE ++ Sbjct 402 EIPE----KPTLNELQKLAGKINWASQTIPELSIKSLTNMTRGNQNLNSTREWTEEARLE 457 Query 297 EWEACRKKLEEMEGNYYNKDKDVYGQLAW-GDKAIEYIVYQE-KGKPLWVNVVHNIKNLS 354 +A R E+++ YY+ K++Y +L+ G I Y VYQ+ K LW + K + Sbjct 458 VQKAKRAIEEQVQLGYYDPSKELYAKLSLVGPHQISYQVYQKCPEKILWYGKMSRQKKKA 517 Query 355 --IPQQVIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRLELQLGNITWM----PKFWSCY 408 ++A K+ +E IIR GK P +P E W E L N ++ P+ + Sbjct 518 ENTCDIALRACYKIREESIIRIGKEPRYEIPTSREAW--ESNLINSPYLKAPPPEVDYIH 575 Query 409 RGHTRWRKRNIIEE--VVEGPTYYTDGGKK-NKVGSLGFIVSTGEKFRKHEEGTNQQLEL 465 R ++I++ + T+Y DGG+K K + TG+ EG+NQ+ E+ Sbjct 576 AALNIKRALSMIKDPPISGAETWYIDGGRKLGKAAKAAYWTDTGKWQVMELEGSNQKAEI 635 Query 466 RAIEEALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVP 525 +A+ ALK GP+ MN++TDS+Y L + D+ I ++E KK I + WVP Sbjct 636 QALLLALKAGPEEMNIITDSQYMINILSQQPDK---MEGIWQEVLEELEKKTAIFIDWVP 692 Query 526 GHKGIPQNEEIDKYISEIFLAKEGEGILPKREEDAGYDLICPEEVTIEPGQVKCIPIELR 585 GHKGIP NEE+DK + + + EG+GIL KR EDAGYDL+ +E+ + PG+VK IP ++ Sbjct 693 GHKGIPGNEEVDK-LCQTMMIIEGDGILDKRTEDAGYDLLAAKEIHLLPGEVKVIPTGVK 751 Query 586 LNLKKSQWAMIATKSSMAAKGVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQL 645 L L K W +I KSS+ +KG+ GG+ID GY+G+I VIM N +K ++ + + +K AQL Sbjct 752 LMLPKGHWGLIMGKSSIGSKGLDVLGGVIDEGYRGEIGVIMINLSKKSITLLEQQKIAQL 811 Query 646 ILMDKKHGKLEPWGESRKTERGEKGFGSTGMY--WIENIPLAEEDHTKWHQDARSLHLEF 703 I++ KH LE +ERGEKG+GSTG++ W++ I AE +H K+H D + L EF Sbjct 812 IILPHKHEALEQGKVVMDSERGEKGYGSTGVFSSWVDRIEEAETNHEKFHSDPQYLRTEF 871 Query 704 EIPRTAAEDI 713 +P+ AE+I Sbjct 872 NLPKMVAEEI 881 >RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; Contains: RecName: Full=Integrase; Short=IN [Feline immunodeficiency virus (isolate TM2)] Sequence ID: P31822.1 Length: 1124 Range 1: 161 to 881 Score:524 bits(1349), Expect:8e-173, Method:Compositional matrix adjust., Identities:309/731(42%), Positives:445/731(60%), Gaps:28/731(3%) Query 1 PITKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKK 60 PI KV++K+ GP V QWPL+ EK++ LT+I+++L EGK+ +A P+ NTP+F IKK Sbjct 161 PIVKVRMKDPTQGPQVKQWPLSNEKIEALTDIVERLESEGKVKRADPNNPWNTPVFAIKK 220 Query 61 KSGKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYRE 120 KSGKWRMLIDFR LNK T+ E QLGLPHP GLQ KK VT+LDIGDAYFTIPL Y Sbjct 221 KSGKWRMLIDFRVLNKLTDKGAEVQLGLPHPAGLQMKKQVTVLDIGDAYFTIPLDPDYAP 280 Query 121 YTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDD 180 YT FTL NN GP +RY W LPQGW LSP +YQ T+ IL+ +I+Q+ E+ YMDD Sbjct 281 YTAFTLPRKNNAGPGRRYVWCSLPQGWVLSPLIYQSTLNNILQPFIKQNSELDIYQYMDD 340 Query 181 IYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTL 240 IYIGS+L K+H++ V++L + +GF PE+K Q+ P KW+G+ELHP TW Q+ L Sbjct 341 IYIGSNLNKKEHKQKVEELRKLLLWWGFETPEDKLQEEPPYKWMGYELHPLTWSIQQKQL 400 Query 241 --PELTKGTITLNKLQKLVGELVW-RQSIIGKSIPNILKLMEGDRELQSERKIEEVHVKE 297 PE TLN+LQKL G++ W Q+I SI + +M GD++L S R+ +E Sbjct 401 EIPERP----TLNELQKLAGKINWASQTIPDLSIKELTNMMRGDQKLDSIREWTVEAKRE 456 Query 298 WEACRKKLE-EMEGNYYNKDKDVYGQLAW-GDKAIEYIVYQEKGKP-LWVNVVHNIKNLS 354 + ++ +E + + NYY+ ++ +Y +L+ G I Y VYQ+ + LW ++ K + Sbjct 457 VQKAKEAIETQAQLNYYDPNRGLYAKLSLVGPHQICYQVYQKNPEHILWYGKINRQKKKA 516 Query 355 --IPQQVIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRLELQLGNITWM----PKFWSCY 408 ++A K+ +E IIR GK P +P E W E L ++ P+ + Sbjct 517 ENTCDIALRACYKIREESIIRIGKEPVYEIPASREAW--ESNLIRSPYLKAPPPEVEFIH 574 Query 409 RGHTRWRKRNIIEE--VVEGPTYYTDGGKK-NKVGSLGFIVSTGEKFRKHEEGTNQQLEL 465 + R ++I++ ++ T+Y DG +K K + +TG+ EG+NQ+ E+ Sbjct 575 AALSIKRALSMIQDAPIIGAETWYIDGSRKQGKAARAAYWTNTGKWQIMEIEGSNQKAEV 634 Query 466 RAIEEALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVP 525 +A+ ALK G + MN++TDS+Y L + D + + ++E KK I + WVP Sbjct 635 QALLLALKAGSEEMNIITDSQYILNILNQQPD---LMEGLWQEVLEQMEKKIAIFIDWVP 691 Query 526 GHKGIPQNEEIDKYISEIFLAKEGEGILPKREEDAGYDLI-CPEEVTIEPGQVKCIPIEL 584 GHKGIP NEE+DK + + + EGEGIL KR EDAGYDL+ +E PG+V+ +P + Sbjct 692 GHKGIPGNEEVDK-LCQTMMIIEGEGILEKRSEDAGYDLLAAAQETHFLPGEVRIVPTKT 750 Query 585 RLNLKKSQWAMIATKSSMAAKGVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQ 644 R+ L K W +I KSS+ +KGV GG+ID GY+G++ VIM N K ++ I + +K AQ Sbjct 751 RIMLPKGHWGLIMGKSSIGSKGVDVLGGVIDEGYRGELGVIMINLTKKSITILEKQKIAQ 810 Query 645 LILMDKKHGKLEPWGESRKTERGEKGFGSTGMY--WIENIPLAEEDHTKWHQDARSLHLE 702 LI++ +H L+ +ERGEKGFGS G++ W++ I AE +H K+H D + L E Sbjct 811 LIILPCRHEGLQQGEIQMNSERGEKGFGSAGVFSSWVDRIEEAELNHEKFHSDPQYLRTE 870 Query 703 FEIPRTAAEDI 713 F +PR AE+I Sbjct 871 FNLPRIVAEEI 881 >RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; Contains: RecName: Full=Integrase; Short=IN [Feline immunodeficiency virus (isolate Petaluma)] Sequence ID: P16088.1 Length: 1124 Range 1: 162 to 881 Score:522 bits(1344), Expect:4e-172, Method:Compositional matrix adjust., Identities:312/730(43%), Positives:447/730(61%), Gaps:27/730(3%) Query 1 PITKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKK 60 P+ KVK+K+ GP + QWPLT EK++ LTEI+++L +EGK+ +A + NTP+F IKK Sbjct 162 PVVKVKMKDPNKGPQIKQWPLTNEKIEALTEIVERLEKEGKVKRADSNNPWNTPVFAIKK 221 Query 61 KSGKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYRE 120 KSGKWRMLIDFRELNK TE E QLGLPHP GLQ KK VT+LDIGDAYFTIPL Y Sbjct 222 KSGKWRMLIDFRELNKLTEKGAEVQLGLPHPAGLQIKKQVTVLDIGDAYFTIPLDPDYAP 281 Query 121 YTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDD 180 YT FTL NN GP +R+ W LPQGW LSP +YQ T+ I++ +I+Q+P++ YMDD Sbjct 282 YTAFTLPRKNNAGPGRRFVWCSLPQGWILSPLIYQSTLDNIIQPFIRQNPQLDIYQYMDD 341 Query 181 IYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTL 240 IYIGS+L K+H+E V++L + +GF PE+K Q+ P W+G+ELHP TW Q+ L Sbjct 342 IYIGSNLSKKEHKEKVEELRKLLLWWGFETPEDKLQEEPPYTWMGYELHPLTWTIQQKQL 401 Query 241 --PELTKGTITLNKLQKLVGELVW-RQSIIGKSIPNILKLMEGDRELQSERKIEEVHVKE 297 PE TLN+LQKL G++ W Q+I SI + +M G++ L S R+ + E Sbjct 402 DIPEQP----TLNELQKLAGKINWASQAIPDLSIKALTNMMRGNQNLNSTRQWTKEARLE 457 Query 298 WEACRKKLEE-MEGNYYNKDKDVYGQLAW-GDKAIEYIVYQ-EKGKPLWVNVVHNIKNLS 354 + +K +EE ++ YY+ K++Y +L+ G I Y VYQ + K LW + K + Sbjct 458 VQKAKKAIEEQVQLGYYDPSKELYAKLSLVGPHQISYQVYQKDPEKILWYGKMSRQKKKA 517 Query 355 --IPQQVIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRLELQLGNITWM----PKFWSCY 408 ++A K+ +E IIR GK P +P E W E L N ++ P+ + Sbjct 518 ENTCDIALRACYKIREESIIRIGKEPRYEIPTSREAW--ESNLINSPYLKAPPPEVEYIH 575 Query 409 RGHTRWRKRNIIEE--VVEGPTYYTDGGKK-NKVGSLGFIVSTGEKFRKHEEGTNQQLEL 465 R ++I++ + T+Y DGG+K K + TG+ EG+NQ+ E+ Sbjct 576 AALNIKRALSMIKDAPIPGAETWYIDGGRKLGKAAKAAYWTDTGKWRVMDLEGSNQKAEI 635 Query 466 RAIEEALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVP 525 +A+ ALK G + MN++TDS+Y +L+ D + I ++E KK I + WVP Sbjct 636 QALLLALKAGSEEMNIITDSQYVINIILQQPD---MMEGIWQEVLEELEKKTAIFIDWVP 692 Query 526 GHKGIPQNEEIDKYISEIFLAKEGEGILPKREEDAGYDLICPEEVTIEPGQVKCIPIELR 585 GHKGIP NEE+DK + + + EG+GIL KR EDAGYDL+ +E+ + PG+VK IP ++ Sbjct 693 GHKGIPGNEEVDK-LCQTMMIIEGDGILDKRSEDAGYDLLAAKEIHLLPGEVKVIPTGVK 751 Query 586 LNLKKSQWAMIATKSSMAAKGVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQL 645 L L K W +I KSS+ +KG+ GG+ID GY+G+I VIM N ++ ++ + + +K AQL Sbjct 752 LMLPKGYWGLIIGKSSIGSKGLDVLGGVIDEGYRGEIGVIMINVSRKSITLMERQKIAQL 811 Query 646 ILMDKKHGKLEPWGESRKTERGEKGFGSTGMY--WIENIPLAEEDHTKWHQDARSLHLEF 703 I++ KH LE +ERG+ G+GSTG++ W++ I AE +H K+H D + L EF Sbjct 812 IILPCKHEVLEQGKVVMDSERGDNGYGSTGVFSSWVDRIEEAEINHEKFHSDPQYLRTEF 871 Query 704 EIPRTAAEDI 713 +P+ AE+I Sbjct 872 NLPKMVAEEI 881 >RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Integrase; Short=IN [Equine infectious anemia virus (clone CL22)] Sequence ID: P32542.1 Length: 1146 Range 1: 195 to 911 Score:489 bits(1260), Expect:2e-159, Method:Compositional matrix adjust., Identities:288/722(40%), Positives:434/722(60%), Gaps:17/722(2%) Query 4 KVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSG 63 K++LKEG GP +PQWPLT+EKL+G EI+ +L+ EGK+ +A + N+PIF IKK+SG Sbjct 195 KIELKEGTMGPKIPQWPLTKEKLEGAKEIVQRLLSEGKISEASDNNPYNSPIFVIKKRSG 254 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR+L D RELNK + TE GLPHPGGL K KH+T+LDIGDAYFTIPL +R YT Sbjct 255 KWRLLQDLRELNKTVQVGTEISRGLPHPGGLIKCKHMTVLDIGDAYFTIPLDPEFRPYTA 314 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S N+ P KRY W LPQG+ LSP +YQ T+QEIL+ + +++PE+Q YMDD+++ Sbjct 315 FTIPSINHQEPDKRYVWNCLPQGFVLSPYIYQKTLQEILQPFRERYPEVQLYQYMDDLFV 374 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GS+ K+H+E++ +L + + GF P++K Q+ P WLG++L P+ WK QK L ++ Sbjct 375 GSNGSKKQHKELIIELRAILLEKGFETPDDKLQEVPPYSWLGYQLCPENWKVQKMQL-DM 433 Query 244 TKGTITLNKLQKLVGELVWRQS-IIGKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K TLN +QKL+G + W S + G ++ +I +G EL + E KE E Sbjct 434 VKNP-TLNDVQKLMGNITWMSSGVPGLTVKHIAATTKGCLELNQKVIWTEEAQKELEENN 492 Query 303 KKLEEMEG-NYYNKDKDVYGQLAWG-DKAIEYIVYQEKGKPLWVN--VVHNIKNLSIPQQ 358 +K++ +G YYN ++++ ++ + Y++ Q +G LW ++ K S + Sbjct 493 EKIKNAQGLQYYNPEEEMLCEVEITKNYEATYVIKQSQGI-LWAGKKIMKANKGWSTVKN 551 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRLELQLG-NITWMPKFWSCYR-GHTRWRK 416 ++ Q + E I R GK P +P +E E+Q G +W+P+ ++ H WR Sbjct 552 LMLLLQHVATESITRVGKCPTFKVPFTKEQVMWEMQKGWYYSWLPEIVYTHQVVHDDWRM 611 Query 417 RNIIEEVVEGPTYYTDGGKKNKVGSLGFIVSTGE-KFRKHEEGTNQQLELRAIEEALKQG 475 + ++EE G T YTDGGK+N G ++ S G K ++ T+Q E AI+ AL+ Sbjct 612 K-LVEEPTSGITIYTDGGKQNGEGIAAYVTSNGRTKQKRLGPVTHQVAERMAIQMALEDT 670 Query 476 -PQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQN- 533 + +N+VTDS Y ++ + E ++P I I +K+ + WVPGHKGI N Sbjct 671 RDKQVNIVTDSYYCWKNITEGLGLEGPQSPWWPIIQNI-REKEIVYFAWVPGHKGICGNQ 729 Query 534 --EEIDKYISEIFLAKEGEGILPKREEDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKS 591 +E K EI LA +G I KR+EDAG+DL P ++ I K IP ++++ + + Sbjct 730 LADEAAKIKEEIMLAYQGTQIKEKRDEDAGFDLCVPYDIMIPVSDTKIIPTDVKIQVPPN 789 Query 592 QWAMIATKSSMAAKGVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKK 651 + + KSSMA +G+ GGIID GY G+IQVI N K + + +G+KFAQLI++ Sbjct 790 SFGWVTGKSSMAKQGLLINGGIIDEGYTGEIQVICTNIGKSNIKLIEGQKFAQLIILQHH 849 Query 652 HGKLEPWGESRKTERGEKGFGSTGMYWIENIPLAEEDHTKWHQDARSLHLEFEIPRTAAE 711 +PW E++ ++RG+KGFGSTG++W+ENI A+++H WH + L ++IP T A+ Sbjct 850 SNSRQPWDENKISQRGDKGFGSTGVFWVENIQEAQDEHENWHTSPKILARNYKIPLTVAK 909 Query 712 DI 713 I Sbjct 910 QI 911 >RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Integrase; Short=IN [Equine infectious anemia virus (CLONE 1369)] Sequence ID: P11204.1 Length: 1146 Range 1: 195 to 911 Score:489 bits(1260), Expect:2e-159, Method:Compositional matrix adjust., Identities:288/722(40%), Positives:434/722(60%), Gaps:17/722(2%) Query 4 KVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSG 63 K++LKEG GP +PQWPLT+EKL+G EI+ +L+ EGK+ +A + N+PIF IKK+SG Sbjct 195 KIELKEGTMGPKIPQWPLTKEKLEGAKEIVQRLLSEGKISEASDNNPYNSPIFVIKKRSG 254 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR+L D RELNK + TE GLPHPGGL K KH+T+LDIGDAYFTIPL +R YT Sbjct 255 KWRLLQDLRELNKTVQVGTEISRGLPHPGGLIKCKHMTVLDIGDAYFTIPLDPEFRPYTA 314 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S N+ P KRY W LPQG+ LSP +YQ T+QEIL+ + +++PE+Q YMDD+++ Sbjct 315 FTIPSINHQEPDKRYVWNCLPQGFVLSPYIYQKTLQEILQPFRERYPEVQLYQYMDDLFV 374 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GS+ K+H+E++ +L + + GF P++K Q+ P WLG++L P+ WK QK L ++ Sbjct 375 GSNGSKKQHKELIIELRAILLEEGFETPDDKLQEVPPYSWLGYQLCPENWKVQKMQL-DM 433 Query 244 TKGTITLNKLQKLVGELVWRQS-IIGKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K TLN +QKL+G + W S + G ++ +I +G EL + E KE E Sbjct 434 VKNP-TLNDVQKLMGNITWMSSGVPGLTVKHIAATTKGCLELNQKVIWTEEAQKELEENN 492 Query 303 KKLEEMEG-NYYNKDKDVYGQLAWG-DKAIEYIVYQEKGKPLWVN--VVHNIKNLSIPQQ 358 +K++ +G YYN ++++ ++ + Y++ Q +G LW ++ K S + Sbjct 493 EKIKNAQGLQYYNPEEEMLCEVEITKNYEATYVIKQSQGI-LWAGKKIMKANKGWSTVKN 551 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRLELQLG-NITWMPKFWSCYR-GHTRWRK 416 ++ Q + E I R GK P +P +E E+Q G +W+P+ ++ H WR Sbjct 552 LMLLLQHVATESITRVGKCPTFKVPFTKEQVMWEMQKGWYYSWLPEIVYTHQVVHDDWRM 611 Query 417 RNIIEEVVEGPTYYTDGGKKNKVGSLGFIVSTGE-KFRKHEEGTNQQLELRAIEEALKQG 475 + ++EE G T YTDGGK+N G ++ S G K ++ T+Q E AI+ AL+ Sbjct 612 K-LVEEPTSGITIYTDGGKQNGEGIAAYVTSNGRTKQKRLGPVTHQVAERMAIQMALEDT 670 Query 476 -PQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQN- 533 + +N+VTDS Y ++ + E ++P I I +K+ + WVPGHKGI N Sbjct 671 RDKQVNIVTDSYYCWKNITEGLGLEGPQSPWWPIIQNI-REKEIVYFAWVPGHKGICGNQ 729 Query 534 --EEIDKYISEIFLAKEGEGILPKREEDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKS 591 +E K EI LA +G I KR+EDAG+DL P ++ I K IP ++++ + + Sbjct 730 LADEAAKIKEEIMLAYQGTQIKEKRDEDAGFDLCVPYDIMIPVSDTKIIPTDVKIQVPPN 789 Query 592 QWAMIATKSSMAAKGVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKK 651 + + KSSMA +G+ GGIID GY G+IQVI N K + + +G+KFAQLI++ Sbjct 790 SFGWVTGKSSMAKQGLLINGGIIDEGYTGEIQVICTNIGKSNIKLIEGQKFAQLIILQHH 849 Query 652 HGKLEPWGESRKTERGEKGFGSTGMYWIENIPLAEEDHTKWHQDARSLHLEFEIPRTAAE 711 +PW E++ ++RG+KGFGSTG++W+ENI A+++H WH + L ++IP T A+ Sbjct 850 SNSRQPWDENKISQRGDKGFGSTGVFWVENIQEAQDEHENWHTSPKILARNYKIPLTVAK 909 Query 712 DI 713 I Sbjct 910 QI 911 >RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Integrase; Short=IN [Equine infectious anemia virus (ISOLATE WYOMING)] Sequence ID: P03371.1 Length: 1145 Range 1: 195 to 910 Score:489 bits(1259), Expect:3e-159, Method:Compositional matrix adjust., Identities:291/722(40%), Positives:434/722(60%), Gaps:18/722(2%) Query 4 KVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSG 63 K++LKEG GP +PQWPLT+EKL+G E + +L+ EGK+ +A + N+PIF IKK+SG Sbjct 195 KIELKEGTMGPKIPQWPLTKEKLEGAKETVQRLLSEGKISEASDNNPYNSPIFVIKKRSG 254 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR+L D RELNK + TE GLPHPGGL K KH+T+LDIGDAYFTIPL +R YT Sbjct 255 KWRLLQDLRELNKTVQVGTEISRGLPHPGGLIKCKHMTVLDIGDAYFTIPLDPEFRPYTA 314 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S N+ P KRY WK LPQG+ LSP +YQ T+QEIL+ + +++PE+Q YMDD+++ Sbjct 315 FTIPSINHQEPDKRYVWKCLPQGFVLSPYIYQKTLQEILQPFRERYPEVQLYQYMDDLFV 374 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GS+ K+H+E++ +L I Q GF P++K Q+ P WLG++L P+ WK QK L ++ Sbjct 375 GSNGSKKQHKELIIEL-RAILQKGFETPDDKLQEVPPYSWLGYQLCPENWKVQKMQL-DM 432 Query 244 TKGTITLNKLQKLVGELVWRQS-IIGKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K TLN +QKL+G + W S + G ++ +I +G EL + E KE E Sbjct 433 VKNP-TLNDVQKLMGNITWMSSGVPGLTVKHIAATTKGCLELNQKVIWTEEAQKELEENN 491 Query 303 KKLEEMEG-NYYNKDKDVYGQLAWG-DKAIEYIVYQEKGKPLWVN--VVHNIKNLSIPQQ 358 +K++ +G YYN ++++ ++ + Y++ Q +G LW ++ K S + Sbjct 492 EKIKNAQGLQYYNPEEEMLCEVEITKNYEATYVIKQSQGI-LWAGKKIMKANKGWSTVKN 550 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRLELQLG-NITWMPKFWSCYR-GHTRWRK 416 ++ Q + E I R GK P +P +E E+Q G +W+P+ ++ H WR Sbjct 551 LMLLLQHVATESITRVGKCPTFKVPFTKEQVMWEMQKGWYYSWLPEIVYTHQVVHDDWRM 610 Query 417 RNIIEEVVEGPTYYTDGGKKNKVGSLGFIVSTGE-KFRKHEEGTNQQLELRAIEEALKQG 475 + ++EE G T YTDGGK+N G ++ S G K ++ T+Q E AI+ AL+ Sbjct 611 K-LVEEPTSGITIYTDGGKQNGEGIAAYVTSNGRTKQKRLGPVTHQVAERMAIQMALEDT 669 Query 476 -PQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQN- 533 + +N+VTDS Y ++ + E +NP I I +K+ + WVPGHKGI N Sbjct 670 RDKQVNIVTDSYYCWKNITEGLGLEGPQNPWWPIIQNI-REKEIVYFAWVPGHKGIYGNQ 728 Query 534 --EEIDKYISEIFLAKEGEGILPKREEDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKS 591 +E K EI LA +G I KR+EDAG+DL P ++ I K IP ++++ + + Sbjct 729 LADEAAKIKEEIMLAYQGTQIKEKRDEDAGFDLCVPYDIMIPVSDTKIIPTDVKIQVPPN 788 Query 592 QWAMIATKSSMAAKGVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKK 651 + + KSSMA +G+ GGIID GY G+IQVI N K + + +G+KFAQLI++ Sbjct 789 SFGWVTGKSSMAKQGLLINGGIIDEGYTGEIQVICTNIGKSNIKLIEGQKFAQLIILQHH 848 Query 652 HGKLEPWGESRKTERGEKGFGSTGMYWIENIPLAEEDHTKWHQDARSLHLEFEIPRTAAE 711 +PW E++ ++RG+KGFGSTG++W+ENI A+++H WH + L ++IP T A+ Sbjct 849 SNSRQPWDENKISQRGDKGFGSTGVFWVENIQEAQDEHENWHTSPKILARNYKIPLTVAK 908 Query 712 DI 713 I Sbjct 909 QI 910 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [SIVcpz EK505] Sequence ID: Q1A249.3 Length: 1448 Range 1: 606 to 1149 Score:380 bits(977), Expect:2e-116, Method:Compositional matrix adjust., Identities:233/549(42%), Positives:327/549(59%), Gaps:17/549(3%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K LTEI ++ +EGK+ + P NTPIF IKKK S Sbjct 606 VKLKPGMDGPRVKQWPLTEEKIKALTEICTEMEKEGKISRIGPENPYNTPIFAIKKKDST 665 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL+KKK VT+LD+GDAYF+ PL E +R+YT Sbjct 666 KWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSCPLDENFRKYTA 725 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q TM +ILE + + +PE+ YMDD+Y+ Sbjct 726 FTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQSTMTKILEPFRKNNPELVIYQYMDDLYV 785 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HRE V+ L +++ +GFT P++K QK P W+G+ELHP W Q LPE Sbjct 786 GSDLEITQHREAVERLRSHLLTWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQTIQLPE- 844 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K T T+N +Q+LVG+L W I G + + KL+ G + L + E R Sbjct 845 -KDTWTVNDIQQLVGKLNWASQIYPGIKVKQLCKLIRGAKALTEVVTLTREAELELAENR 903 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YYN DK++ ++ G Y +YQ+ K L +++ +Q Sbjct 904 EILKEPVHGAYYNPDKELIAEIQKQGQGQWTYQIYQDLHKNLKTGKYAKMRSTHTNDIRQ 963 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + + QK+ E I+ GK P LP ++E W + TW+P +F + W Sbjct 964 LTEVVQKVALESIVIWGKTPKFRLPVQKEVWETWWTEYWQATWIPDWEFVNTPPLVKLWY 1023 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E + TYY DG ++ K+G GF+ G +K E TNQQ EL+A+ AL Sbjct 1024 QLE-TEPISGAETYYVDGAANRETKLGKAGFVTDRGRQKVTSISETTNQQAELQAVLMAL 1082 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + Q +N+VTDS+Y + D+ ++ + +I+E KK+RI + WVP HKGI Sbjct 1083 QDAGQEVNIVTDSQYVLGIIHSQPDKS--ESELVNQIIEELIKKERIYLSWVPAHKGIGG 1140 Query 533 NEEIDKYIS 541 NE+IDK +S Sbjct 1141 NEQIDKLVS 1149 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (NDK ISOLATE)] Sequence ID: P18802.3 Length: 1432 Range 1: 594 to 1159 Score:379 bits(973), Expect:7e-116, Method:Compositional matrix adjust., Identities:237/575(41%), Positives:343/575(59%), Gaps:26/575(4%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K LTEI ++ +EGK+ + P NTPIF IKKK S Sbjct 594 VKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISRIGPENPYNTPIFAIKKKDST 653 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL+KKK VT+LD+GDAYF++PL E +R+YT Sbjct 654 KWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTA 713 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +ILE + +Q+PEI YMDD+Y+ Sbjct 714 FTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPEIVIYQYMDDLYV 773 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR +++L ++ ++GFT P++K QK P W+G+ELHP W Q LPE Sbjct 774 GSDLEIGQHRTKIEELREHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPINLPE- 832 Query 244 TKGTITLNKLQKLVGELVWRQSI-IGKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I G + + KL+ G + L + E E R Sbjct 833 -KESWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGTKALTEVVPLTEEAELELAENR 891 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YY+ KD+ +L GD Y +YQE K L + +Q Sbjct 892 EILKEPVHGVYYDPSKDLIAELQKQGDGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQ 951 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + +A QK+ E I+ GK P LP ++E W ++ TW+P +F + W Sbjct 952 LTEAVQKIATESIVIWGKTPKFKLPIQKETWETWWIEYWQATWIPEWEFVNTPPLVKLWY 1011 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E ++ T+Y DG ++ K+G G++ G +K + TNQ+ EL+AI AL Sbjct 1012 QLE-KEPIIGAETFYVDGAANRETKLGKAGYVTDRGRQKVVPFTDTTNQKTELQAINLAL 1070 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + D+ ++ + ++I+E KK+++ + WVP HKGI Sbjct 1071 QDSGLEVNIVTDSQYALGIIQAQPDKS--ESELVSQIIEQLIKKEKVYLAWVPAHKGIGG 1128 Query 533 NEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 NE++DK +S+ +FL +GI +EE Y Sbjct 1129 NEQVDKLVSQGIRKVLFL----DGIDKAQEEHEKY 1159 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr170Gag-Pol; Contains: RecName: Full=Matrix protein p16; Short=MA; Contains: RecName: Full=Capsid protein p26; Short=CA; Contains: RecName: Full=Transframe peptide; AltName: Full=p11; Contains: RecName: Full=Protease; AltName: Full=P119; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; AltName: Full=P72; Contains: RecName: Full=Integrase; Short=IN [Jembrana disease virus] Sequence ID: Q82851.1 Length: 1432 Range 1: 553 to 1190 Score:379 bits(972), Expect:9e-116, Method:Compositional matrix adjust., Identities:247/706(35%), Positives:383/706(54%), Gaps:73/706(10%) Query 13 GPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSG-KWRMLIDF 71 GP VPQWPLT EK K L EI+++L+++GK+ + P NTP+F IKKK G KWRML+DF Sbjct 553 GPRVPQWPLTLEKYKALKEIVEELLKDGKISRTPWDNPFNTPVFVIKKKGGSKWRMLMDF 612 Query 72 RELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNN 131 R LNK T E Q+GLP+P G+Q+ +H+T +DI DAYFTIPL E +R+YT F+++ N Sbjct 613 RALNKVTNKGQEFQIGLPYPPGIQQCEHITAIDIKDAYFTIPLDENFRQYTAFSVVPVNR 672 Query 132 LGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKK 191 GP +RY+W VLPQGW SP++YQ T QEI+ + + P+I YMDD+ IGSD Sbjct 673 EGPLERYHWNVLPQGWVCSPAIYQTTTQEIIAEIKDRFPDIVLYQYMDDLLIGSDR--PD 730 Query 192 HREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPELTKGTITLN 251 H+ +V ++ + YGF PEEK Q+ +WLG+EL P+ W+FQ + K +T+N Sbjct 731 HKRVVSEIREELGAYGFKTPEEKIQEEQ-VQWLGYELTPKRWRFQPRQIK--IKKVVTVN 787 Query 252 KLQKLVGELVWRQSIIGKSIPNILKLMEGDRELQSERKIEEVHVKEWEACRKKLEEMEGN 311 +LQ+++G VW Q + + + L++G +L+ + K+ E ++ E K+L++ E Sbjct 788 ELQQMIGNCVWVQPEVKIPLSPLSDLLKGKTDLKDKIKLTEEAIQCLETVNKRLKDPEWK 847 Query 312 YYNKD-KDVYGQLAWGDKAIEYIVYQEKGKPLWVNVVH-NIKNLSIPQQVIKAAQKLTQE 369 K+ ++ ++ + + Y + Q+ G P+W V + + + ++++ +KL++ Sbjct 848 ERIKEGTELVVKIQLIPEGVVYDLLQD-GNPIWGGVKGWDYNHANKIKKMLSIMKKLSRI 906 Query 370 VIIRTGKIPWILLPGKEEDWRLELQ-LGNITWMPKFWSCYRGHTRWRKRNIIEEVVEG-P 427 V+I TG+ L+PG EDW LQ + +T +P+ Y+ RW ++ V+E P Sbjct 907 VMIMTGREVSFLIPGDSEDWESALQRINTLTEIPEV-KFYKHACRW--TSVCGPVIERYP 963 Query 428 TYYTDGGKKNKVGSLGFIVSTGEKFRKHEEGTNQQLELRAIEEALKQGPQTMNLVTDSRY 487 TYYTDGGKK + + G+ R+ GTNQQ EL+A+ AL+ GP MN++TDSRY Sbjct 964 TYYTDGGKKGSKAAAAYW-REGKIRREVFPGTNQQAELKAVLMALQDGPAKMNIITDSRY 1022 Query 488 AFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQNEEIDKYISEIFLAK 547 AFE +R E + + I E +K+ +GV WVPGHKGI N E+D+ + + Sbjct 1023 AFEG-MREEPETWGREGLWKEIGEELRRKEYVGVSWVPGHKGIGGNTEVDQEVQKAL--- 1078 Query 548 EGEGILPKREEDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAKGV 607 + P+E+ +E G+ K + + W + +G+ Sbjct 1079 -----------QGPITVSLPQEILLEAGETKLVKTGIF-------WEGLRPCKLRPEEGL 1120 Query 608 FTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERG 667 +G +ID ++Q+ + N+ V I QG+ Sbjct 1121 KLKGSLIDE----ELQLEITNTQNSRVGIRQGQ--------------------------- 1149 Query 668 EKGFGSTGMYWIENIPLAEEDHTKWHQDARSLHLEFEIPRTAAEDI 713 + G +IE IP A E+H KWH A L EF++PR A +I Sbjct 1150 -----TIGTCFIEAIPQAIEEHEKWHTTAEILAREFQLPRRVAREI 1190 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (OYI ISOLATE)] Sequence ID: P20892.3 Length: 1434 Range 1: 596 to 1161 Score:376 bits(966), Expect:7e-115, Method:Compositional matrix adjust., Identities:236/575(41%), Positives:343/575(59%), Gaps:26/575(4%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K L EI ++ +EGK+ K P NTP+F IKKK S Sbjct 596 VKLKPGMDGPKVKQWPLTEEKIKVLIEICTEMEKEGKISKVGPENPYNTPVFAIKKKDST 655 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL+KKK VT+LD+GDAYF++PL + +R+YT Sbjct 656 KWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTA 715 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +ILE + +Q+P+I YMDD+Y+ Sbjct 716 FTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYV 775 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR +++L ++ ++GFT P++K QK P W+G+ELHP W Q LPE Sbjct 776 GSDLEIGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIMLPE- 834 Query 244 TKGTITLNKLQKLVGELVWRQSI-IGKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I G + N+ KL+ G + L + E E R Sbjct 835 -KDSWTVNDIQKLVGKLNWASQIYAGIKVKNLCKLLRGTKALTEVIPLTEEAELELAENR 893 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YY+ KD+ +L G Y +YQE K L ++ +Q Sbjct 894 EILKEPVHGVYYDPSKDLVAELQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQ 953 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + +A QK+TQE I+ GK P LP ++E W + TW+P +F + W Sbjct 954 LTEAVQKITQESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWY 1013 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + + +V T+Y DG ++ K+G G++ G +K + TNQ+ EL+AI AL Sbjct 1014 QLE-KDPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLAL 1072 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + D+ ++ + ++I+E KK+++ + WVP HKGI Sbjct 1073 QDSGLEVNIVTDSQYALGIIQAQPDKS--ESELVSQIIEQLIKKEKVYLAWVPAHKGIGG 1130 Query 533 NEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 NE++DK +S +FL +GI +EE Y Sbjct 1131 NEQVDKLVSAGIRKVLFL----DGIDKAQEEHEKY 1161 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (MAL ISOLATE)] Sequence ID: P04588.3 Length: 1440 Range 1: 602 to 1167 Score:376 bits(965), Expect:9e-115, Method:Compositional matrix adjust., Identities:237/575(41%), Positives:339/575(58%), Gaps:26/575(4%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K LTEI + +EGK+ K P NTP+F IKKK S Sbjct 602 VKLKPGMDGPRVKQWPLTEEKIKALTEICKDMEKEGKILKIGPENPYNTPVFAIKKKDST 661 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L++FRELNK+T+D E QLG+PHP GL+KKK VT+LD+GDAYF++PL E +R+YT Sbjct 662 KWRKLVNFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTA 721 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +ILE + ++PEI YMDD+Y+ Sbjct 722 FTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRTKNPEIVIYQYMDDLYV 781 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR +++L ++ ++GFT P++K QK P W+G+ELHP W Q LP+ Sbjct 782 GSDLEIGQHRTKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPD- 840 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I G + + KL+ G + L + E R Sbjct 841 -KESWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGAKALTDIVPLTAEAELELAENR 899 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YY+ KD+ ++ G Y +YQE+ K L IK+ +Q Sbjct 900 EILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEQYKNLKTGKYARIKSAHTNDVKQ 959 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + +A QK+ QE I+ GK P LP ++E W + TW+P +F + W Sbjct 960 LTEAVQKIAQESIVIWGKTPKFRLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWY 1019 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E +V T+Y DG ++ K G G++ G +K E TNQ+ EL+AI AL Sbjct 1020 QLE-TEPIVGAETFYVDGAANRETKKGKAGYVTDRGRQKVVSLTETTNQKTELQAIHLAL 1078 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + D+ ++ I +I+E +KD++ + WVP HKGI Sbjct 1079 QDSGSEVNIVTDSQYALGIIQAQPDKS--ESEIVNQIIEQLIQKDKVYLSWVPAHKGIGG 1136 Query 533 NEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 NE++DK +S +FL +GI +EE Y Sbjct 1137 NEQVDKLVSSGIRKVLFL----DGIDKAQEEHEKY 1167 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:F2_MP257C] Sequence ID: Q9QBZ1.3 Length: 1434 Range 1: 596 to 1139 Score:375 bits(963), Expect:2e-114, Method:Compositional matrix adjust., Identities:226/549(41%), Positives:333/549(60%), Gaps:17/549(3%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K LTEI ++ +EGK+ K P NTP+F IKKK S Sbjct 596 VKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPVFAIKKKDST 655 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL+KK+ VT+LD+GDAYF++PL + +R+YT Sbjct 656 KWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKRSVTVLDVGDAYFSVPLDKEFRKYTA 715 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +ILE + +++PEI YMDD+Y+ Sbjct 716 FTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMIKILEPFRKENPEIVIYQYMDDLYV 775 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR +++L ++ ++GFT P++K QK P W+G+ELHP W Q LP+ Sbjct 776 GSDLEIGQHRAKIEELREHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQAIQLPD- 834 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I G + ++ KL+ G + L + E R Sbjct 835 -KSSWTVNDIQKLVGKLNWASQIYPGIRVKHLCKLLRGTKALTDVVPLTAEAELELAENR 893 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YY+ KD+ ++ G Y +YQE K L K+ +Q Sbjct 894 EILKEPVHGVYYDPSKDLIAEIQKQGHDQWTYQIYQEPHKNLKTGKYARRKSAHTNDVKQ 953 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + + QK+ E I+ GK+P LP ++E W + + TW+P +F + W Sbjct 954 LTEVVQKVATEGIVIWGKVPKFRLPIQKETWEIWWTEYWQATWIPEWEFVNTPPLVKLWY 1013 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E ++ T+Y DG ++ K+G G+I G +K E TNQ+ EL+AI+ AL Sbjct 1014 QLE-TEPIIGAETFYVDGAANRETKLGKAGYITDRGRQKVVSLTETTNQKTELQAIQLAL 1072 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + + D+ ++ I +I+E +K+R+ + WVP HKGI Sbjct 1073 QDSGSEVNIVTDSQYALGIIQAHPDKS--ESEIVNQIIEQLIQKERVYLSWVPAHKGIGG 1130 Query 533 NEEIDKYIS 541 NE++DK +S Sbjct 1131 NEQVDKLVS 1139 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:B_89.6] Sequence ID: Q73368.3 Length: 1435 Range 1: 597 to 1162 Score:374 bits(960), Expect:4e-114, Method:Compositional matrix adjust., Identities:236/575(41%), Positives:337/575(58%), Gaps:26/575(4%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K L EI ++ +EGK+ K P NTP+F IKKK S Sbjct 597 VKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDST 656 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL+KKK VT+LD+GDAYF++PL E +R+YT Sbjct 657 KWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTA 716 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +ILE + +Q+P+I YMDD+Y+ Sbjct 717 FTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYV 776 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR ++DL ++ ++GFT P++K QK P W+G+ELHP W Q LPE Sbjct 777 GSDLEIGQHRAKIEDLRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPE- 835 Query 244 TKGTITLNKLQKLVGELVWRQSI-IGKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I G + + KL+ G + L + E E R Sbjct 836 -KDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGTKALTEVVPLTEEAELELAENR 894 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YY+ KD+ +L G Y +YQE K L ++ +Q Sbjct 895 EILKEPVHGVYYDPTKDLIAELQKQGQGQWTYQIYQEPYKNLKTGKYARMRGAHTNDVKQ 954 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + +A QK+ E I+ GK P LP ++E W TW+P +F + W Sbjct 955 LTEAVQKIATESIVIWGKTPKFKLPIQKETWEAWWTDYWQATWIPEWEFVNTPPLVKLWY 1014 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E +V T+Y DG + K G G++ G +K + TNQ+ EL+AI AL Sbjct 1015 QLE-KEPIVGAETFYVDGAANRDTKSGKAGYVTDRGRQKVVSLADTTNQKTELQAIHLAL 1073 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + D+ ++ + ++I+E KK+++ + WVP HKGI Sbjct 1074 QDSGLEVNIVTDSQYALGIIQAQPDKS--ESELVSQIIEQLIKKEKVYLAWVPAHKGIGG 1131 Query 533 NEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 NE++DK +S +FL +GI +EE Y Sbjct 1132 NEQVDKLVSAGIRKVLFL----DGIDKAQEEHEKY 1162 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (Z2/CDC-Z34 ISOLATE)] Sequence ID: P12499.3 Length: 1436 Range 1: 598 to 1163 Score:373 bits(957), Expect:1e-113, Method:Compositional matrix adjust., Identities:233/575(41%), Positives:343/575(59%), Gaps:26/575(4%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K LTEI ++ +EGK+ + P NTPIF IKKK S Sbjct 598 VKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISRVGPENPYNTPIFAIKKKDST 657 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL+KKK VT+LD+GDAYF++PL + +R+YT Sbjct 658 KWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTA 717 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +ILE + +Q+PEI YMDD+Y+ Sbjct 718 FTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPEIVIYQYMDDLYV 777 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR +++L ++ ++GFT P++K QK P W+G+ELHP W Q LPE Sbjct 778 GSDLEIGQHRTKIEELREHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQSIKLPE- 836 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I G + + KL+ G + L + E E R Sbjct 837 -KESWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENR 895 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YY+ KD+ ++ G Y +YQE K L ++ +Q Sbjct 896 EILKEPVHGVYYDPSKDLIAEIQKQGHGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQ 955 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + + QK++ E I+ GK P LP ++E W ++ TW+P +F + W Sbjct 956 LAEVVQKISTESIVIWGKTPKFRLPIQKETWETWWVEYWQATWIPEWEFVNTPPLVKLWY 1015 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E ++ T+Y DG ++ K+G G++ G +K + TNQ+ EL+AI AL Sbjct 1016 QLE-KEPIIGAETFYVDGAANRETKLGKAGYVTDRGRQKVVPFTDTTNQKTELQAINLAL 1074 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + D+ ++ + ++I+E KK+++ + WVP HKGI Sbjct 1075 QDSGLEVNIVTDSQYALGIIQAQPDKS--ESELVSQIIEQLIKKEKVYLAWVPAHKGIGG 1132 Query 533 NEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 NE++DK +S+ +FL +GI +EE Y Sbjct 1133 NEQVDKLVSQGIRKVLFL----DGIDKAQEEHEKY 1163 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (isolate YU2)] Sequence ID: P35963.3 Length: 1435 Range 1: 597 to 1162 Score:372 bits(955), Expect:2e-113, Method:Compositional matrix adjust., Identities:232/575(40%), Positives:339/575(58%), Gaps:26/575(4%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K L EI ++ +EGK+ K P NTP+F IKKK S Sbjct 597 VKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDST 656 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL+KKK VT+LD+GDAYF++PL+E +R+YT Sbjct 657 KWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLHEDFRKYTA 716 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M ILE + +Q+P++ YMDD+Y+ Sbjct 717 FTIPSINNETPGTRYQYNVLPQGWKGSPAIFQSSMTTILEPFRKQNPDLVIYQYMDDLYV 776 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR +++L ++ ++GFT P++K QK P W+G+ELHP W Q LPE Sbjct 777 GSDLEIGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPE- 835 Query 244 TKGTITLNKLQKLVGELVWRQSI-IGKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I G + + KL+ G + L + E E R Sbjct 836 -KDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENR 894 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YY+ KD+ ++ G Y +YQE K L + +Q Sbjct 895 EILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQ 954 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + +A QK+ E I+ GK P LP ++E W + TW+P +F + W Sbjct 955 LTEAVQKIATESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWY 1014 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E ++ T+Y DG ++ K+G G++ + G +K + TNQ+ EL+AI AL Sbjct 1015 QLE-KEPIIGAETFYVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLAL 1073 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + D ++ + ++I+E KK+++ + WVP HKGI Sbjct 1074 QDSGLEVNIVTDSQYALGIIQAQPDRS--ESELVSQIIEQLIKKEKVYLAWVPAHKGIGG 1131 Query 533 NEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 NE++DK +S +FL +GI +EE Y Sbjct 1132 NEQVDKLVSAGIRKVLFL----DGIDKAQEEHEKY 1162 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:H_VI991] Sequence ID: Q9Q720.3 Length: 1436 Range 1: 598 to 1141 Score:372 bits(955), Expect:2e-113, Method:Compositional matrix adjust., Identities:225/548(41%), Positives:330/548(60%), Gaps:15/548(2%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 V LK G GP V QWPLTEEK+K LTEI ++ +EGK+ K P NTPIF IKKK S Sbjct 598 VTLKPGMDGPKVKQWPLTEEKIKALTEICLEMEKEGKISKIGPENPYNTPIFAIKKKNST 657 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 +WR L+DFRELNK+T+D E QLG+PHP GL+KKK V++LD+G AYF++PL+E +R+YT Sbjct 658 RWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVSVLDVGGAYFSVPLHEDFRKYTA 717 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +ILE + +Q+PE+ YMDD+Y+ Sbjct 718 FTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPEVIIYQYMDDLYV 777 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HRE +++L ++ ++GFT P++K QK P W+G+ELHP W Q LPE Sbjct 778 GSDLEIGQHREKIEELRAHLLRWGFTTPDQKHQKEPPFLWMGYELHPDKWTVQPVKLPE- 836 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I G + + L+ G + L + + E R Sbjct 837 -KDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCXLLRGAKALTEIVPLTKEAELELAENR 895 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YY+ K++ ++ G Y +YQE K L +++ +Q Sbjct 896 EILKEPVHGAYYDPSKELIAEIQKQGPDQWTYQIYQEPFKNLKTGKYAKMRSAHTNDVKQ 955 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMPKFWSCYRGHTRWRKR 417 + + QK+ E I+ GKIP LP ++E W + TW+P++ H Sbjct 956 LTEVVQKIATESIVIWGKIPKFRLPIQKETWETWWTEHWQATWIPEWEFVNTPHLVKLWY 1015 Query 418 NIIEEVVEGP-TYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEALK 473 + E +EG TYY DG ++ K+G G++ G +K E TNQ+ EL+AI AL+ Sbjct 1016 QLETEPIEGAETYYVDGAANRETKMGKAGYVTDRGKQKIVSLTETTNQKTELQAIYLALQ 1075 Query 474 QGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQN 533 + +N+VTDS+YA + D+ ++ + +I+E KK++ + WVP HKGI N Sbjct 1076 ESGPEVNIVTDSQYALGIIQAQPDKS--ESELVNQIIEELIKKEKFYLSWVPAHKGIGGN 1133 Query 534 EEIDKYIS 541 E++DK +S Sbjct 1134 EQVDKLVS 1141 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:B_ARV2/SF2] Sequence ID: P03369.3 Length: 1437 Range 1: 599 to 1142 Score:371 bits(952), Expect:7e-113, Method:Compositional matrix adjust., Identities:226/549(41%), Positives:334/549(60%), Gaps:17/549(3%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K L EI ++ +EGK+ K P NTP+F IKKK S Sbjct 599 VKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDST 658 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL+KKK VT+LD+GDAYF++PL + +R+YT Sbjct 659 KWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTA 718 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +ILE + +Q+P+I YMDD+Y+ Sbjct 719 FTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYV 778 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR +++L ++ ++GFT P++K QK P W+G+ELHP W Q LPE Sbjct 779 GSDLEIGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIMLPE- 837 Query 244 TKGTITLNKLQKLVGELVWRQSI-IGKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I G + + KL+ G + L + E E R Sbjct 838 -KDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGTKALTEVIPLTEEAELELAENR 896 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIK--NLSIPQQ 358 + L+E + YY+ KD+ ++ G Y +YQE K L ++ + + +Q Sbjct 897 EILKEPVHEVYYDPSKDLVAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQ 956 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + +A QK++ E I+ GKIP LP ++E W ++ TW+P +F + W Sbjct 957 LTEAVQKVSTESIVIWGKIPKFKLPIQKETWEAWWMEYWQATWIPEWEFVNTPPLVKLWY 1016 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E +V T+Y DG ++ K+G G++ G +K + TNQ+ EL+AI AL Sbjct 1017 QLE-KEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVVSIADTTNQKTELQAIHLAL 1075 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + D+ ++ + ++I+E KK+++ + WVP HKGI Sbjct 1076 QDSGLEVNIVTDSQYALGIIQAQPDKS--ESELVSQIIEQLIKKEKVYLAWVPAHKGIGG 1133 Query 533 NEEIDKYIS 541 NE++DK +S Sbjct 1134 NEQVDKLVS 1142 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (JRCSF ISOLATE)] Sequence ID: P20875.3 Length: 1439 Range 1: 601 to 1144 Score:371 bits(952), Expect:7e-113, Method:Compositional matrix adjust., Identities:225/549(41%), Positives:331/549(60%), Gaps:17/549(3%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K L EI ++ +EGK+ K P NTP+F IKKK S Sbjct 601 VKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDST 660 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELN++T+D E QLG+PHP GL+KKK VT+LD+GDAYF++PL + +R+YT Sbjct 661 KWRKLVDFRELNRRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTA 720 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +ILE + +Q+P+I YMDD+Y+ Sbjct 721 FTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIIIYQYMDDLYV 780 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR +++L ++ ++GFT P++K QK P W+G+ELHP W Q LPE Sbjct 781 GSDLEIGQHRTKIEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPE- 839 Query 244 TKGTITLNKLQKLVGELVWRQSI-IGKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I G + + KL+ G + L + + E R Sbjct 840 -KDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGTKALTEVIPLTKEAELELAENR 898 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YY+ KD+ ++ G Y ++QE K L + +Q Sbjct 899 EILKEPVHGVYYDPSKDLIVEIQKQGQGQWTYQIFQEPFKNLKTGKYARTRGAHTNDVKQ 958 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + +A QK+ E I+ GKIP LP ++E W + TW+P +F + W Sbjct 959 LTEAVQKIANESIVIWGKIPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWY 1018 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E +V T+Y DG ++ K+G G++ S G +K + TNQ+ EL+AI AL Sbjct 1019 QLE-KEPIVGAETFYVDGAANRETKLGKAGYVTSRGRQKVVSLTDTTNQKTELQAIHLAL 1077 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + D+ ++ + ++I+E KK+++ + WVP HKGI Sbjct 1078 QDSGLEVNIVTDSQYALGIIQAQPDKS--ESELVSQIIEQLIKKEKVYLAWVPAHKGIGG 1135 Query 533 NEEIDKYIS 541 NE++DK +S Sbjct 1136 NEQVDKLVS 1144 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (RF/HAT ISOLATE)] Sequence ID: P05959.3 Length: 1436 Range 1: 598 to 1141 Score:370 bits(951), Expect:8e-113, Method:Compositional matrix adjust., Identities:224/549(41%), Positives:331/549(60%), Gaps:17/549(3%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K L EI ++ +EGK+ K P NTP+F IKKK S Sbjct 598 VKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDST 657 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL+KKK VT+LD+GDAYF++PL + +R+YT Sbjct 658 KWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKEFRKYTA 717 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +ILE + +Q+PEI YMDD+Y+ Sbjct 718 FTIPSINNETPRIRYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQNPEIVIYQYMDDLYV 777 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR +++L ++ ++GFT P++K QK P W+G+ELHP W Q LPE Sbjct 778 GSDLEIGQHRIKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPE- 836 Query 244 TKGTITLNKLQKLVGELVWRQSI-IGKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I G + + KL+ G + L ++ + E R Sbjct 837 -KDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGTKALTEVVQLTKEAELELAENR 895 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YY+ KD+ ++ G Y +YQE K L ++ +Q Sbjct 896 EILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQ 955 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + +A QK+ E I+ GK P LP ++E W + TW+P +F + W Sbjct 956 LTEAVQKVATESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWY 1015 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E ++ T+Y DG ++ K+G G++ G +K + TNQ+ EL+AI AL Sbjct 1016 QLE-KEPIIGAETFYVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLAL 1074 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + D+ ++ + ++I+E KK+++ + WVP HKGI Sbjct 1075 QDSGLEVNIVTDSQYALGIIQAQPDKS--ESELVSQIIEQLIKKEKVYLAWVPAHKGIGG 1132 Query 533 NEEIDKYIS 541 NE++D+ +S Sbjct 1133 NEQVDRLVS 1141 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:F2_MP255C] Sequence ID: Q9QBZ5.3 Length: 1430 Range 1: 592 to 1157 Score:370 bits(951), Expect:9e-113, Method:Compositional matrix adjust., Identities:232/575(40%), Positives:339/575(58%), Gaps:26/575(4%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K LTEI ++ +EGK+ K P NTP+F IKKK S Sbjct 592 VKLKPGMDGPRVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPVFAIKKKDST 651 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL+KKK VT+LD+GDAYF++PL + +R+YT Sbjct 652 KWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKEFRKYTA 711 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +ILE + ++PEI YMDD+Y+ Sbjct 712 FTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRAKNPEIVIYQYMDDLYV 771 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR +++L ++ ++GFT P++K QK P W+G+ELHP W Q LPE Sbjct 772 GSDLEIGQHRTKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPE- 830 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I G I ++ +L+ G + L + E R Sbjct 831 -KSSWTVNDIQKLVGKLNWASQIYPGIRIKHLCRLLRGAKALTDVVPLTAEAELELAENR 889 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + ++E + G YY+ KD+ ++ G Y +YQE K L K+ +Q Sbjct 890 EIIKEPVHGVYYDPSKDLIAEIQKQGHDQWTYQIYQEPYKNLKTGKYAKRKSAHTNDVKQ 949 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + + QK+ E I+ GKIP LP ++E W + + TW+P +F + W Sbjct 950 LTEVVQKIATESIVIWGKIPKFRLPIQKETWEIWWTEYWQATWIPEWEFVNTPPLVKLWY 1009 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E + T+Y DG ++ K+G G++ G +K E TNQ+ EL+AI AL Sbjct 1010 QLE-TEPIAGAETFYVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELQAIHLAL 1068 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + D+ ++ + +I+E +K+++ + WVP HKGI Sbjct 1069 QDSGSEVNIVTDSQYALGIIQAQPDKS--ESELVNQIIEQLIQKEKVYLSWVPAHKGIGG 1126 Query 533 NEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 NE++DK +S +FL +GI +EE Y Sbjct 1127 NEQVDKLVSSGIRKVLFL----DGIDKAQEEHEKY 1157 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:B_HXB2R] Sequence ID: P04585.4 Length: 1435 Range 1: 597 to 1140 Score:370 bits(950), Expect:1e-112, Method:Compositional matrix adjust., Identities:227/549(41%), Positives:330/549(60%), Gaps:17/549(3%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K L EI ++ +EGK+ K P NTP+F IKKK S Sbjct 597 VKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDST 656 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL+KKK VT+LD+GDAYF++PL E +R+YT Sbjct 657 KWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTA 716 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +ILE + +Q+P+I YMDD+Y+ Sbjct 717 FTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYV 776 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR +++L ++ ++G T P++K QK P W+G+ELHP W Q LPE Sbjct 777 GSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPE- 835 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I G + + KL+ G + L + E E R Sbjct 836 -KDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENR 894 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YY+ KD+ ++ G Y +YQE K L ++ +Q Sbjct 895 EILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQ 954 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + +A QK+T E I+ GK P LP ++E W + TW+P +F + W Sbjct 955 LTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWY 1014 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E +V T+Y DG ++ K+G G++ + G +K + TNQ+ EL+AI AL Sbjct 1015 QLE-KEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLAL 1073 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + D+ ++ + +I+E KK+++ + WVP HKGI Sbjct 1074 QDSGLEVNIVTDSQYALGIIQAQPDQS--ESELVNQIIEQLIKKEKVYLAWVPAHKGIGG 1131 Query 533 NEEIDKYIS 541 NE++DK +S Sbjct 1132 NEQVDKLVS 1140 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:G_SE6165] Sequence ID: O89940.3 Length: 1433 Range 1: 595 to 1160 Score:370 bits(950), Expect:1e-112, Method:Compositional matrix adjust., Identities:235/584(40%), Positives:333/584(57%), Gaps:44/584(7%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K LTEI ++ EEGK+ K P NTPIF IKKK S Sbjct 595 VKLKPGMDGPRVKQWPLTEEKIKALTEICKEMEEEGKISKIGPENPYNTPIFAIKKKDST 654 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL+KKK VT+LD+GDAYF++PL E +R+YT Sbjct 655 KWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTA 714 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M ILE + +PE+ YMDD+Y+ Sbjct 715 FTIPSINNETPGVRYQYNVLPQGWKGSPAIFQSSMTRILEPFRANNPEMVIYQYMDDLYV 774 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR +++L ++ ++GFT P++K QK P W+G+ELHP W Q LP+ Sbjct 775 GSDLEIGQHRAKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPD- 833 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I G + ++ KL+ G + L + E R Sbjct 834 -KESWTVNDIQKLVGKLNWASQIYPGIKVTHLCKLLRGAKALTDIVSLTAEAEMELAENR 892 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVN--VVHNIKNLSIPQQ 358 + L E + G YY+ K++ ++ G Y +YQE K L + + +Q Sbjct 893 EILREPVHGVYYDPSKELIAEVQKQGLDQWTYQIYQEPYKNLKTGKYAKRGSAHTNDVKQ 952 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL------------ELQLGNITWMPKFWS 406 + + QK+ E I+ GK P LP ++E W + E + N + K W Sbjct 953 LTEVVQKIATESIVIWGKTPKFKLPIRKETWEIWWTDYWQATWIPEWEFVNTPPLVKLW- 1011 Query 407 CYRGHTRWRKRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQL 463 YR T E + TYY DG ++ K+G G++ G +K E TNQ+ Sbjct 1012 -YRLET--------EPIPGAETYYVDGAANRETKLGKAGYVTDKGKQKIITLTETTNQKA 1062 Query 464 ELRAIEEALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHW 523 EL+AI+ AL+ +N+VTDS+YA + D + + +I+E KK+++ + W Sbjct 1063 ELQAIQLALQDSRSEVNIVTDSQYALGIIQAQPDRS--EAELVNQIIEQLIKKEKVYLSW 1120 Query 524 VPGHKGIPQNEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 VP HKGI NE++DK +S +FL +GI +EE Y Sbjct 1121 VPAHKGIGGNEQVDKLVSSGIRKVLFL----DGIDKAQEEHERY 1160 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (BRU ISOLATE)] Sequence ID: P03367.3 Length: 1447 Range 1: 609 to 1152 Score:370 bits(950), Expect:1e-112, Method:Compositional matrix adjust., Identities:227/549(41%), Positives:329/549(59%), Gaps:17/549(3%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K L EI ++ +EGK+ K P NTP+F IKKK S Sbjct 609 VKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDST 668 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL+KKK VT+LD+GDAYF++PL E +R+YT Sbjct 669 KWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTA 728 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +ILE + +Q+P+I YMDD+Y+ Sbjct 729 FTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYV 788 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR +++L ++ ++G T P++K QK P W+G+ELHP W Q LPE Sbjct 789 GSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPE- 847 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I G + + KL+ G + L + E E R Sbjct 848 -KDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENR 906 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YY+ KD+ ++ G Y +YQE K L + +Q Sbjct 907 EILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQ 966 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + +A QK+T E I+ GK P LP ++E W + TW+P +F + W Sbjct 967 LTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWY 1026 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E +V T+Y DG ++ K+G G++ + G +K + TNQ+ EL+AI AL Sbjct 1027 QLE-KEPIVGAETFYVDGAASRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIHLAL 1085 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + D+ ++ + +I+E KK+++ + WVP HKGI Sbjct 1086 QDSGLEVNIVTDSQYALGIIQAQPDKS--ESELVNQIIEQLIKKEKVYLAWVPAHKGIGG 1143 Query 533 NEEIDKYIS 541 NE++DK +S Sbjct 1144 NEQVDKLVS 1152 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:B_MN] Sequence ID: P05961.3 Length: 1441 Range 1: 603 to 1146 Score:370 bits(949), Expect:2e-112, Method:Compositional matrix adjust., Identities:225/549(41%), Positives:330/549(60%), Gaps:17/549(3%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K L EI ++ +EGK+ K P NTP+F IKKK S Sbjct 603 VKLKPGMDGPKVKQWPLTEEKIKALIEICTEMEKEGKISKIGPENPYNTPVFAIKKKDST 662 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL+KKK VT+LD+GDAYF++PL + +R+YT Sbjct 663 KWRKLVDFRELNKKTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTA 722 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +ILE + +Q+P+I YMDD+Y+ Sbjct 723 FTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYV 782 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR +++L ++ ++GFT P++K QK P W+G+ELHP W Q LPE Sbjct 783 GSDLEIGQHRAKIEELRRHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPE- 841 Query 244 TKGTITLNKLQKLVGELVWRQSI-IGKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I G + + KL+ G + L + E E R Sbjct 842 -KDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGTKALTEVIPLTEEAELELAENR 900 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YY+ KD+ ++ G Y +YQE K L ++ +Q Sbjct 901 EILKEPVHGVYYDPSKDLIAEVQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQ 960 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMPKFWSCYRGHTRWRKR 417 + +A QK+ E I+ GK P LP ++E W + TW+P+ W + Sbjct 961 LTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWTEYTXATWIPE-WEVVNTPPLVKLW 1019 Query 418 NIIEE--VVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 +E+ +V T+Y DG ++ K G G++ + G +K + TNQ+ EL+AI AL Sbjct 1020 YQLEKEPIVGAETFYVDGAANRETKKGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLAL 1079 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + D+ ++ + ++I+E KK+++ + WVP HKGI Sbjct 1080 QDSGLEVNIVTDSQYALGIIQAQPDKS--ESELVSQIIEQLIKKEKVYLAWVPAHKGIGG 1137 Query 533 NEEIDKYIS 541 NE++DK +S Sbjct 1138 NEQVDKLVS 1146 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (BH5 ISOLATE)] Sequence ID: P04587.3 Length: 1447 Range 1: 609 to 1174 Score:370 bits(949), Expect:2e-112, Method:Compositional matrix adjust., Identities:233/575(41%), Positives:339/575(58%), Gaps:26/575(4%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K L EI ++ +EGK+ K P NTP+F IKKK S Sbjct 609 VKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDST 668 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELN++T+D E QLG+PHP GL+KKK VT+LD+GDAYF++PL E +R+YT Sbjct 669 KWRKLVDFRELNRRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTA 728 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P Y + VLPQGWK SP+++Q +M +ILE + +Q+P+I YMDD+Y+ Sbjct 729 FTIPSINNETPGSGYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYV 788 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR +++L ++ ++GFT P++K QK P W+G+ELHP W Q LPE Sbjct 789 GSDLEIGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTIQPIVLPE- 847 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I G + + KL+ G + L + E E R Sbjct 848 -KDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENR 906 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YY+ KD+ ++ G Y +YQE K L ++ +Q Sbjct 907 EILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQ 966 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + +A QK+T E I+ GK P LP ++E W + TW+P +F + W Sbjct 967 LTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWY 1026 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E +V T+Y DG ++ K+G G++ + G +K TNQ+ EL+AI AL Sbjct 1027 QLE-KEPIVGAETFYVDGAASRETKLGKAGYVTNRGRQKVVTLTHTTNQKTELQAIHLAL 1085 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + D+ ++ + +I+E KK+++ + WVP HKGI Sbjct 1086 QDSGLEVNIVTDSQYALGIIQAQPDKS--ESELVNQIIEQLIKKEKVYLAWVPAHKGIGG 1143 Query 533 NEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 NE++DK +S +FL +GI +EE Y Sbjct 1144 NEQVDKLVSAGIRKILFL----DGIDKAQEEHEKY 1174 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:H_90CF056] Sequence ID: O93215.4 Length: 1435 Range 1: 597 to 1162 Score:369 bits(948), Expect:2e-112, Method:Compositional matrix adjust., Identities:231/575(40%), Positives:338/575(58%), Gaps:26/575(4%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K LTEI ++ +EGK+ + P +TPIF IKKK S Sbjct 597 VKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISRIGPENPYSTPIFAIKKKDST 656 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL+KKK V++LD+GDAYF++PL + +R+YT Sbjct 657 KWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVSVLDVGDAYFSVPLDKEFRKYTA 716 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +IL + +Q+PE+ YMDD+Y+ Sbjct 717 FTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILAPFREQNPEMVIYQYMDDLYV 776 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR +++L ++ ++GFT P++K QK P W+G+ELHP W Q LPE Sbjct 777 GSDLEIGQHRAKIEELRAHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQTVKLPE- 835 Query 244 TKGTITLNKLQKLVGELVWRQSIIGK-SIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I + + KL+ G + L + + E R Sbjct 836 -KDSWTVNDIQKLVGKLNWASQIYPNIKVKQLCKLLRGAKALTDIIPLTKEAELELAENR 894 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L E + G YY+ KD+ ++ G Y +YQE K L ++ +Q Sbjct 895 EILREPIHGVYYDPSKDLIAEIRKQGQGQWTYQIYQEPFKNLKTGKYAKMRTAHTNDIKQ 954 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMPKFWSCYRGH--TRWR 415 + +A QK++ E I+ GKIP LP ++E W + TW+P++ H W Sbjct 955 LTEAVQKISTESIVIWGKIPKFRLPIQKETWETWWTEYWQATWIPEWEFVNTPHLVKLWY 1014 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E + TYY DG ++ K+G G++ G +K E TNQ+ EL+AI AL Sbjct 1015 QLE-TEPIAGAETYYIDGAANRETKLGKAGYVTDRGKQKVVSLTETTNQKTELQAIYLAL 1073 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + D+ ++ + +I+E KK+++ + WVP HKGI Sbjct 1074 QDSGLEVNIVTDSQYALGIIQAQPDKS--ESELVNQIIEELIKKEKVYLSWVPAHKGIGG 1131 Query 533 NEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 NE++DK +S +FL +GI +EE Y Sbjct 1132 NEQVDKLVSSGVRKVLFL----DGIDKAQEEHERY 1162 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 O_MVP5180] Sequence ID: Q79666.3 Length: 1446 Range 1: 598 to 1163 Score:369 bits(948), Expect:3e-112, Method:Compositional matrix adjust., Identities:230/575(40%), Positives:338/575(58%), Gaps:26/575(4%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPL+ EK++ LT I ++ +EGK+ + P NTPIF IKKK S Sbjct 598 VKLKPGMDGPKVKQWPLSREKIEALTAICQEMEQEGKISRIGPENPYNTPIFAIKKKDST 657 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHPGGL++++ VT+LD+GDAYF+ PL +R+YT Sbjct 658 KWRKLVDFRELNKRTQDFWEVQLGIPHPGGLKQRQSVTVLDVGDAYFSCPLDPDFRKYTA 717 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +IL+ + + +PE++ Y+DD+Y+ Sbjct 718 FTIPSVNNETPGVRYQYNVLPQGWKGSPAIFQSSMTKILDPFRKSNPEVEIYQYIDDLYV 777 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDL + +HR+ V+ L ++ Q+GFT P++K QK P W+G+ELHP W Q LP+ Sbjct 778 GSDLPLAEHRKRVELLREHLYQWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPD- 836 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K T+N +QKLVG+L W I G + + KL+ G + L + + E E R Sbjct 837 -KEVWTVNDIQKLVGKLNWASQIYQGIRVKELCKLIRGTKSLTEVVPLSKEAELELEENR 895 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVN--VVHNIKNLSIPQQ 358 +KL+E + G YY DKD++ + G+ Y VYQ++ K L + + +Q Sbjct 896 EKLKEPVHGVYYQPDKDLWVSIQKHGEGQWTYQVYQDEHKNLKTGKYARQKASHTNDIRQ 955 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + + QK++QE I+ GK+P LP E W + TW+P +F S W Sbjct 956 LAEVVQKVSQEAIVIWGKLPKFRLPVTRETWETWWAEYWQATWIPEWEFVSTPPLIKLWY 1015 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E +V T+Y DG + K+G G++ G + K EE TNQ+ EL A+ AL Sbjct 1016 QLE-TEPIVGAETFYVDGAANRNTKLGKAGYVTEQGKQNIIKLEETTNQKAELMAVLIAL 1074 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + + +N+VTDS+Y + + +PI +I+E KK+R+ + WVP HKGI Sbjct 1075 QDSKEQVNIVTDSQYVLGIISSQPTQS--DSPIVQQIIEELTKKERVYLTWVPAHKGIGG 1132 Query 533 NEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 NE+IDK +S+ +FL EGI +E+ Y Sbjct 1133 NEKIDKLVSKDIRRVLFL----EGIDQAQEDHEKY 1163 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 N_YBF30] Sequence ID: O91080.3 Length: 1449 Range 1: 607 to 1150 Score:369 bits(948), Expect:3e-112, Method:Compositional matrix adjust., Identities:226/558(41%), Positives:329/558(58%), Gaps:35/558(6%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLT EK++ L EI ++ +EGK+ + P NTPIF IKKK S Sbjct 607 VKLKPGMDGPKVKQWPLTTEKIEALREICTEMEKEGKISRIGPENPYNTPIFAIKKKDST 666 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL++KK VT+LD+GDAYF+ PL + +R+YT Sbjct 667 KWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKQKKSVTVLDVGDAYFSCPLDKDFRKYTA 726 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q TM +ILE + ++HPEI YMDD+Y+ Sbjct 727 FTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSTMTKILEPFREKHPEIIIYQYMDDLYV 786 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLE+ +HRE V+DL +++ ++GFT P++K QK P W+G+ELHP W Q LPE Sbjct 787 GSDLELAQHREAVEDLRDHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIKLPE- 845 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K T+N +QKLVG+L W I G + + KL+ G + L E E R Sbjct 846 -KDVWTVNDIQKLVGKLNWASQIYPGIRVKQLCKLIRGTKALTEVVNFTEEAELELAENR 904 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YY+ K++ ++ G Y +YQE K L +++ +Q Sbjct 905 EILKEPLHGVYYDPGKELVAEIQKQGQGQWTYQIYQELHKNLKTGKYAKMRSAHTNDIKQ 964 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL------------ELQLGNITWMPKFWS 406 +++ +K+ E I+ GK P LP ++E W E + N + K W Sbjct 965 LVEVVRKVATESIVIWGKTPKFRLPVQKEVWEAWWTDHWQATWIPEWEFVNTPPLVKLW- 1023 Query 407 CYRGHTRWRKRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQL 463 Y+ T E + T+Y DG ++ K+G GF+ G +K + TNQ+ Sbjct 1024 -YQLET--------EPISGAETFYVDGAANRETKLGKAGFVTDRGRQKVVSIADTTNQKA 1074 Query 464 ELRAIEEALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHW 523 EL+AI AL++ + +N+VTDS+YA + D+ ++ + ++I+E KK+R+ + W Sbjct 1075 ELQAILMALQESGRDVNIVTDSQYAMGIIHSQPDKS--ESELVSQIIEELIKKERVYLSW 1132 Query 524 VPGHKGIPQNEEIDKYIS 541 VP HKGI NE++DK +S Sbjct 1133 VPAHKGIGGNEQVDKLVS 1150 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 lw12.3 isolate] Sequence ID: P0C6F2.1 Length: 1435 Range 1: 597 to 1140 Score:369 bits(947), Expect:3e-112, Method:Compositional matrix adjust., Identities:227/549(41%), Positives:329/549(59%), Gaps:17/549(3%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K L EI ++ +EGK+ K P NTP+F IKKK S Sbjct 597 VKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDST 656 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL+KKK VT+LD+GDAYF++PL E +R+YT Sbjct 657 KWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTA 716 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +ILE + +Q+P+I YMDD+Y+ Sbjct 717 FTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYV 776 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR +++L ++ ++G T P++K QK P W+G+ELHP W Q LPE Sbjct 777 GSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPE- 835 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I G + + KL+ G + L + E E R Sbjct 836 -KDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENR 894 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YY+ KD+ ++ G Y +YQE K L ++ +Q Sbjct 895 EILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGTHTNDVKQ 954 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + +A QK+T E I+ GK P LP ++E W + TW+P +F + W Sbjct 955 LTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWY 1014 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E +V T+Y DG ++ K+G G++ + G +K TNQ+ EL+AI AL Sbjct 1015 QLE-KEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLAL 1073 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + D+ ++ + +I+E KK+++ + WVP HKGI Sbjct 1074 QDSGLEVNIVTDSQYALGIIQAQPDKS--ESELVNQIIEQLIKKEKVYLAWVPAHKGIGG 1131 Query 533 NEEIDKYIS 541 NE++DK +S Sbjct 1132 NEQVDKLVS 1140 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 BH10] Sequence ID: P03366.3 Length: 1447 Range 1: 609 to 1152 Score:369 bits(947), Expect:4e-112, Method:Compositional matrix adjust., Identities:227/549(41%), Positives:329/549(59%), Gaps:17/549(3%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K L EI ++ +EGK+ K P NTP+F IKKK S Sbjct 609 VKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDST 668 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL+KKK VT+LD+GDAYF++PL E +R+YT Sbjct 669 KWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTA 728 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +ILE + +Q+P+I YMDD+Y+ Sbjct 729 FTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYV 788 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR +++L ++ ++G T P++K QK P W+G+ELHP W Q LPE Sbjct 789 GSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPE- 847 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I G + + KL+ G + L + E E R Sbjct 848 -KDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENR 906 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YY+ KD+ ++ G Y +YQE K L ++ +Q Sbjct 907 EILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQ 966 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + +A QK+T E I+ GK P LP ++E W + TW+P +F + W Sbjct 967 LTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWY 1026 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E +V T+Y DG ++ K+G G++ + G +K TNQ+ EL+AI AL Sbjct 1027 QLE-KEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLAL 1085 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + D+ ++ + +I+E KK+++ + WVP HKGI Sbjct 1086 QDSGLEVNIVTDSQYALGIIQAQPDKS--ESELVNQIIEQLIKKEKVYLAWVPAHKGIGG 1143 Query 533 NEEIDKYIS 541 NE++DK +S Sbjct 1144 NEQVDKLVS 1152 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)] Sequence ID: P12497.4 Length: 1435 Range 1: 597 to 1162 Score:367 bits(942), Expect:1e-111, Method:Compositional matrix adjust., Identities:231/575(40%), Positives:339/575(58%), Gaps:26/575(4%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K L EI ++ +EGK+ K P NTP+F IKKK S Sbjct 597 VKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDST 656 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL++KK VT+LD+GDAYF++PL + +R+YT Sbjct 657 KWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKQKKSVTVLDVGDAYFSVPLDKDFRKYTA 716 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +ILE + +Q+P+I YMDD+Y+ Sbjct 717 FTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPDIVIYQYMDDLYV 776 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR +++L ++ ++GFT P++K QK P W+G+ELHP W Q LPE Sbjct 777 GSDLEIGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPE- 835 Query 244 TKGTITLNKLQKLVGELVWRQSI-IGKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I G + + KL+ G + L + E E R Sbjct 836 -KDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENR 894 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YY+ KD+ ++ G Y +YQE K L +K +Q Sbjct 895 EILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMKGAHTNDVKQ 954 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + +A QK+ E I+ GK P LP ++E W + TW+P +F + W Sbjct 955 LTEAVQKIATESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWY 1014 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E ++ T+Y DG ++ K+G G++ G +K + TNQ+ EL+AI AL Sbjct 1015 QLE-KEPIIGAETFYVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLAL 1073 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + D+ ++ + ++I+E KK+++ + WVP HKGI Sbjct 1074 QDSGLEVNIVTDSQYALGIIQAQPDKS--ESELVSQIIEQLIKKEKVYLAWVPAHKGIGG 1131 Query 533 NEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 NE++D +S +FL +GI +EE Y Sbjct 1132 NEQVDGLVSAGIRKVLFL----DGIDKAQEEHEKY 1162 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:C_92BR025] Sequence ID: O12158.2 Length: 1431 Range 1: 593 to 1158 Score:367 bits(942), Expect:2e-111, Method:Compositional matrix adjust., Identities:237/575(41%), Positives:332/575(57%), Gaps:26/575(4%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QW LTEEK+K LT I D++ EGK+ K P NTP+F IKKK S Sbjct 593 VKLKPGMDGPKVKQWLLTEEKIKALTAICDEMEREGKITKIGPENPYNTPVFAIKKKDST 652 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T D E QLG+PHP GL+KKK VT+LD+GDAYF++PL E +R+YT Sbjct 653 KWRKLVDFRELNKRTWDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEGFRKYTA 712 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SPS++Q + +ILE + Q+PEI YMDD+Y+ Sbjct 713 FTIPSINNETPGIRYQYNVLPQGWKGSPSIFQSSTTKILEPFRAQNPEIIIYQYMDDLYV 772 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR +++L ++ ++GFT P++K QK P W+G+ELHP W Q LPE Sbjct 773 GSDLEIGQHRAKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPE- 831 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I G + + KL+ G + L + E E R Sbjct 832 -KDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKALTDIVPLTEEAELELAENR 890 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YY+ KD+ ++ G Y +YQE K L ++ +Q Sbjct 891 EILKEPVHGVYYDPSKDLIAEIQKQGQNQWTYQIYQEPFKNLKTGKYAKMRTAHTNDVRQ 950 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + +A QK+ E II GK P LP ++E W TW+P +F + W Sbjct 951 LTEAVQKIALESIIIWGKTPKFRLPIQKETWEAWWTDYWQATWIPEWEFVNTPPLVKLWY 1010 Query 416 KRNIIEEVVEGPTYYTDGGKKN--KVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E + T+Y DG K+G G++ G +K E TNQ+ EL+AI+ AL Sbjct 1011 QLE-KEPIAGAETFYVDGAANREIKMGKAGYVTDRGRQKIVSITETTNQKTELQAIQLAL 1069 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + D+ ++ + +I+E KK+R+ + WVP HKGI Sbjct 1070 QDSGSEVNIVTDSQYALGIIQAQPDKS--ESELVNQIIEQLIKKERVYLSWVPAHKGIGG 1127 Query 533 NEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 NE++DK +S +FL +GI +EE Y Sbjct 1128 NEQVDKLVSSGIRKVLFL----DGINKAQEEHEKY 1158 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:K_96CM-MP535] Sequence ID: Q9QBY3.3 Length: 1430 Range 1: 592 to 1157 Score:367 bits(942), Expect:2e-111, Method:Compositional matrix adjust., Identities:233/575(41%), Positives:338/575(58%), Gaps:26/575(4%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K LTEI ++ +EGK+ K P NTP+F IKKK S Sbjct 592 VKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPVFAIKKKDST 651 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL+KKK VT+LD+GDAYF++PL + +R+YT Sbjct 652 KWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTA 711 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +ILE + ++PE+ YMDD+Y+ Sbjct 712 FTIPSINNETPGVRYQYNVLPQGWKGSPAIFQHSMTKILEPFRIKNPEMVIYQYMDDLYV 771 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI + R +++L ++ ++GFT P++K QK P W+G+ELHP W Q LP+ Sbjct 772 GSDLEIGQPRTKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPD- 830 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I G + + KL+ G + L + E R Sbjct 831 -KDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGVKALTDIVPLTAEAELELAENR 889 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YY+ KD+ ++ G+ Y +YQE K L +++ +Q Sbjct 890 EILKEPVHGVYYDPSKDLIAEIQKQGNDQWTYQIYQEPHKNLKTGKYARMRSAHTNDVKQ 949 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + +A QK+ E I+ GK P LP ++E W + TW+P +F + W Sbjct 950 LTEAVQKIATEGIVIWGKTPKFRLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWY 1009 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E +V T+Y DG ++ K G G++ G +K E TNQ+ EL+AI AL Sbjct 1010 QLE-TEPIVGAETFYVDGAAHRETKKGRAGYVTDRGRQKVVSITETTNQKAELQAICLAL 1068 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + D+ ++ + +I+E KK+RI + WVP HKGI Sbjct 1069 QDSGSEVNIVTDSQYALGIIQAQPDKS--ESDLVNQIIEQLIKKERIYLSWVPAHKGIGG 1126 Query 533 NEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 NE++DK +S +FL +GI +EE Y Sbjct 1127 NEQVDKLVSAGIRKVLFL----DGIDKAQEEHEKY 1157 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (STRAIN UGANDAN / ISOLATE U455)] Sequence ID: P24740.3 Length: 1428 Range 1: 590 to 1133 Score:367 bits(941), Expect:2e-111, Method:Compositional matrix adjust., Identities:225/549(41%), Positives:325/549(59%), Gaps:17/549(3%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK GP V QWPLTEEK+K LTEI +++ +EGK+ K P NTP+F IKKK S Sbjct 590 VKLKPEMDGPKVKQWPLTEEKIKALTEICNEMEKEGKISKIGPENPYNTPVFAIKKKDST 649 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PH GL+KKK VT+LD+GDAYF++PL E +R+YT Sbjct 650 KWRKLVDFRELNKRTQDFWEVQLGIPHTAGLKKKKSVTVLDVGDAYFSVPLDESFRKYTA 709 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SPS++Q +M +ILE + QHP+I YMDD+Y+ Sbjct 710 FTIPSINNETPGVRYQYNVLPQGWKGSPSIFQSSMTKILEPFRSQHPDIVIYQYMDDLYV 769 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR +++L ++ +GF P++K QK P W+G+ELHP W Q LPE Sbjct 770 GSDLEIGQHRAKIEELRAHLLSWGFITPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPE- 828 Query 244 TKGTITLNKLQKLVGELVWRQSI-IGKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I G + + KL+ G + L + E E R Sbjct 829 -KDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTDIVTLTEEAELELAENR 887 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L++ + G YY+ KD+ ++ G Y +YQE K L ++ +Q Sbjct 888 EILKDPVHGVYYDPSKDLVAEIQKQGQDQWTYQIYQEPFKNLKTGKYARKRSAHTNDVKQ 947 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + + QK++ E I+ GKIP LP ++E W ++ TW+P +F + W Sbjct 948 LTEVVQKVSTESIVIWGKIPKFRLPIQKETWEAWWMEYWQATWIPEWEFVNTPPLVKLWY 1007 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + + + T+Y DG ++ K+G G++ G +K E TNQ+ EL AI AL Sbjct 1008 QLE-KDPIAGAETFYVDGAANRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAIHLAL 1066 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + D ++ I +I+E +K+++ + WVP HKGI Sbjct 1067 QDSGSEVNIVTDSQYALGIIQAQPDRS--ESEIVNQIIEKLIEKEKVYLSWVPAHKGIGG 1124 Query 533 NEEIDKYIS 541 NE++DK +S Sbjct 1125 NEQVDKLVS 1133 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:C_ETH2220] Sequence ID: Q75002.3 Length: 1439 Range 1: 601 to 1166 Score:366 bits(940), Expect:4e-111, Method:Compositional matrix adjust., Identities:233/576(40%), Positives:337/576(58%), Gaps:28/576(4%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K LT I +++ +EGK+ + P NTP+F IKKK S Sbjct 601 VKLKPGMDGPKVKQWPLTEEKIKALTAICEEMEQEGKISRIGPENPYNTPVFAIKKKDST 660 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL+KKK VT+LD+GDAYF++PL E +R+YT Sbjct 661 KWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEGFRKYTA 720 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP ++Q +M +ILE + +PEI YMDD+Y+ Sbjct 721 FTIPSTNNETPGIRYQYNVLPQGWKGSPPIFQSSMPQILEPFRAPNPEIVIYQYMDDLYV 780 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR +++L ++ ++GFT P++K QK P W+G+ELHP W Q LPE Sbjct 781 GSDLEIGQHRAPIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPE- 839 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I G + + KL+ G + L + E E R Sbjct 840 -KDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKALTDIVTLTEEAELELAENR 898 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVN--VVHNIKNLSIPQQ 358 + L+E + G +Y+ KD+ ++ G+ + YQE K L + + +Q Sbjct 899 EILKEPVHGVFYDPSKDLIAEIQKQGNDQWTFQFYQEPFKNLKTGKFAKRGTAHTNDVKQ 958 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + QK+ E I+ GK P LP ++E W TW+P +F + W Sbjct 959 LTAVVQKIALESIVIWGKTPKFRLPIQKETWEAWWTDYWQATWIPEWEFVNTPPLVKLWY 1018 Query 416 KRNIIEEVVEG-PTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEA 471 + + +E + G T+Y DG ++ K+G G++ G +K E TNQ+ EL+AI+ A Sbjct 1019 Q--LEKEPIAGVETFYVDGAANRETKIGKAGYVTDRGRQKIVSLTETTNQKTELQAIQLA 1076 Query 472 LKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIP 531 L+ +N+VTDS+YA +L D+ ++ I +I+E K+R+ + WVP HKGI Sbjct 1077 LQDSGSEVNIVTDSQYALGIILAQPDKS--ESEIVNQIIEQLISKERVYLSWVPAHKGIG 1134 Query 532 QNEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 NE++DK +S +FL +GI +EE Y Sbjct 1135 GNEQVDKLVSSGIRKVLFL----DGIDKAQEEHEKY 1166 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:K_97ZR-EQTB11] Sequence ID: Q9QBZ9.2 Length: 1429 Range 1: 592 to 1157 Score:366 bits(939), Expect:4e-111, Method:Compositional matrix adjust., Identities:231/575(40%), Positives:335/575(58%), Gaps:26/575(4%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K L EI ++ +EGK+ K P NTP+F IKKK S Sbjct 592 VKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDST 651 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KW L+DFRELNK+T D E QLG+PHP GL+KKK VT+LD+GDAYF++PL + +R+YT Sbjct 652 KWIKLVDFRELNKRTPDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTA 711 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +ILE + +++P++ YMDD+Y+ Sbjct 712 FTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRRKNPDMVLYQYMDDLYV 771 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR +++L ++ ++GFT P++K QK P W+G+ELHP W Q LP+ Sbjct 772 GSDLEIGQHRAKIEELREHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPD- 830 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I G + + KL+ G + L + E R Sbjct 831 -KDSWTVNDIQKLVGKLNWASQIFPGIKVKQLCKLLRGVKALTDIVPLTAEAELELAENR 889 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YY+ KD+ ++ G Y +YQE K L I++ +Q Sbjct 890 EILKEPVHGVYYDPSKDLIAEIQKQGHGQWTYQIYQEPYKNLKTGKYARIRSAHTNDVKQ 949 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + + QK+ E I+ GK P LP ++E W + TW+P +F + W Sbjct 950 LTEVVQKVAMESIVIWGKTPKFRLPIQKETWGTWWTEYWQATWIPEWEFVNTPPLVKLWY 1009 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E +V T+Y DG ++ K G G++ G +K E TNQ+ EL+AI AL Sbjct 1010 QLE-TEPIVGAETFYVDGAANRETKQGKAGYVTDKGRQKVISITETTNQKTELQAIHLAL 1068 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + D+ ++ + +I+E KKDR+ + WVP HKGI Sbjct 1069 QDSGSEVNIVTDSQYALGIIQAQPDKS--ESELVNQIIEQLIKKDRVYLSWVPAHKGIGG 1126 Query 533 NEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 NE++DK +S +FL +GI +EE Y Sbjct 1127 NEQVDKLVSSGIRKVLFL----DGIDKAQEEHEKY 1157 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:J_SE9280] Sequence ID: Q9WC54.3 Length: 1432 Range 1: 594 to 1137 Score:365 bits(936), Expect:1e-110, Method:Compositional matrix adjust., Identities:222/549(40%), Positives:326/549(59%), Gaps:17/549(3%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP + QWPLTEEK+K LT+I ++ EEGK+ + P NTP+F IKKK S Sbjct 594 VKLKPGMDGPKIKQWPLTEEKIKALTQICAEMEEEGKISRVGPENPYNTPVFAIKKKDST 653 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL+KKK VT+LD+GDAYF++PLYE +R+YT Sbjct 654 KWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLYEDFRKYTA 713 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +IL+ + +++PEI YMDD+Y+ Sbjct 714 FTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILKPFRERNPEIVIYQYMDDLYV 773 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI++HR +K+L ++ ++GFT P++K QK P W+G+ELHP W Q LPE Sbjct 774 GSDLEIEQHRRKIKELREHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPE- 832 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K T+N +QKLVG+L W I G + + KL++G + L + E + Sbjct 833 -KEDWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLKGAKALTDIVPLTREAELELAENK 891 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YY+ K++ ++ G Y +YQE K L ++ +Q Sbjct 892 EILKEPVHGVYYDSAKELIAEVQKQGLDQWTYQIYQEPFKNLKTGKYAKRRSAHTNDVKQ 951 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + + QK+ E I+ GK P LP + E W TW+P +F + W Sbjct 952 LAEVVQKIALEAIVIWGKTPKFRLPIQRETWETWWTDYWQATWIPEWEFVNTPPLVKLWY 1011 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E ++ T+Y DG ++ K G G++ G +K + TNQ+ EL AI AL Sbjct 1012 QLE-KEPIMGAETFYVDGASNRETKTGKAGYVTDKGRQKVVTLTDTTNQKTELHAIYLAL 1070 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + D+ ++ + +I+E KK+++ + WVP HKGI Sbjct 1071 RDSGLEVNIVTDSQYALGIIQAQPDKS--ESELVNQIIEELIKKEKVYLSWVPAHKGIGG 1128 Query 533 NEEIDKYIS 541 NE++DK +S Sbjct 1129 NEQVDKLVS 1137 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:F1_93BR020] Sequence ID: O89290.3 Length: 1430 Range 1: 592 to 1157 Score:364 bits(935), Expect:1e-110, Method:Compositional matrix adjust., Identities:229/575(40%), Positives:338/575(58%), Gaps:26/575(4%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K LTEI ++ +EGK+ K P NTP+F IKKK S Sbjct 592 VKLKPGMDGPKVKQWPLTEEKIKALTEICMEMEKEGKISKIGPENPYNTPVFAIKKKDST 651 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL+KKK VT+LD+GDAYF++PL + +R+YT Sbjct 652 KWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTA 711 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 T+ S NN P RY + VLPQGWK SP+++Q++M +IL+ + ++P+I YMDD+Y+ Sbjct 712 STIPSTNNETPGVRYQYNVLPQGWKGSPAIFQYSMTKILDPFRAKNPDIVIYQYMDDLYV 771 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR +++L ++ ++G T P++K QK P W+G+ELHP W Q LP+ Sbjct 772 GSDLEIGQHRTKIEELREHLLKWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPD- 830 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I G + + KL+ G + L + E R Sbjct 831 -KDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGAKALTDIVPLTTEAELELAENR 889 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YY+ KD+ ++ G Y +YQE K L +++ +Q Sbjct 890 EILKEPVHGAYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYAKMRSAHTNDVKQ 949 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + +A QK++ E I+ GK P LP +E W + TW+P +F + W Sbjct 950 LTEAVQKISLESIVIWGKTPKFRLPILKETWDTWWTEYWQATWIPEWEFVNTPPLVKLWY 1009 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E +V T+Y DG ++ K G G++ G +K E TNQ+ EL+AI+ AL Sbjct 1010 QLE-TEPIVGAETFYVDGASNRETKKGKAGYVTDRGRQKAVSLTETTNQKAELQAIQLAL 1068 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + D+ ++ + +I+E KK+++ + WVP HKGI Sbjct 1069 QDSGSEVNIVTDSQYALGIIQAQPDKS--ESELVNQIIEQLIKKEKVYLSWVPAHKGIGG 1126 Query 533 NEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 NE++DK +S +FL +GI +EE Y Sbjct 1127 NEQVDKLVSAGIRKVLFL----DGIDKAQEEHEKY 1157 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (ELI ISOLATE)] Sequence ID: P04589.3 Length: 1435 Range 1: 597 to 1162 Score:364 bits(934), Expect:2e-110, Method:Compositional matrix adjust., Identities:230/575(40%), Positives:337/575(58%), Gaps:26/575(4%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K LTEI + +EGK+ + P NTPIF IKKK S Sbjct 597 VKLKPGMDGPKVKQWPLTEEKIKALTEICTDMEKEGKISRIGPENPYNTPIFAIKKKDST 656 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL+KKK VT+LD+GDAYF++PL E +R+YT Sbjct 657 KWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTA 716 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +ILE + +Q+PE+ YMDD+Y+ Sbjct 717 FTISSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPEMVIYQYMDDLYV 776 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR ++ L ++ ++GFT P++K QK P W+G+ELHP W Q LPE Sbjct 777 GSDLEIGQHRTKIEKLREHLLRWGFTRPDKKHQKEPPFLWMGYELHPDKWTVQSIKLPE- 835 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +Q LV L W I G + + KL+ G + L + E E R Sbjct 836 -KESWTVNDIQNLVERLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENR 894 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YY+ KD+ ++ G Y +YQE K L ++ +Q Sbjct 895 EILKEPVHGVYYDPSKDLIAEIQKQGHGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQ 954 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + +A Q+++ E I+ G+ P LP ++E W + TW+P +F + W Sbjct 955 LAEAVQRISTESIVIWGRTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWY 1014 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E ++ T+Y DG ++ K+G G++ G +K + TNQ+ EL+AI AL Sbjct 1015 QLE-KEPIIGAETFYVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAINLAL 1073 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + D+ ++ + +I+E KK+++ + WVP HKGI Sbjct 1074 QDSGLEVNIVTDSQYALGIIQAQPDKS--ESELVNQIIEQLIKKEKVYLAWVPAHKGIGG 1131 Query 533 NEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 NE++DK +S+ +FL +GI +EE Y Sbjct 1132 NEQVDKLVSQGIRKVLFL----DGIDKAQEEHEKY 1162 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [SIVcpz MB66] Sequence ID: Q1A267.4 Length: 1438 Range 1: 596 to 1161 Score:363 bits(932), Expect:4e-110, Method:Compositional matrix adjust., Identities:230/575(40%), Positives:337/575(58%), Gaps:26/575(4%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 V LK G GP V QWPLTEEK++ LTEI ++ +EGK+ + P NTPIF IKKK S Sbjct 596 VSLKPGMDGPRVKQWPLTEEKIRALTEICTEMEKEGKISRVGPENPYNTPIFAIKKKDST 655 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL++KK VT+LD+GDAYF+ PL E +R+YT Sbjct 656 KWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKQKKSVTVLDVGDAYFSCPLDENFRKYTA 715 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +ILE + +Q+PEI YMDD+Y+ Sbjct 716 FTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPEIIIYQYMDDLYV 775 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDL+I+ HRE V++L ++ ++GFT P++K QK P W+G+ELHP W Q LPE Sbjct 776 GSDLKIELHREKVEELRAHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPE- 834 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKL+G+L W I G + + KL+ G + L E R Sbjct 835 -KESWTVNDIQKLIGKLNWACQIYPGIRVKQLCKLIRGTKALTEVVTFTTEAELELAENR 893 Query 303 KKLEE-MEGNYYNKDKDVYGQLA-WGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YY+ K++ ++ G Y ++QE+ K L +++ +Q Sbjct 894 EILKEPVHGAYYDPSKELIAEIQKQGQGQWTYQIFQEQYKNLKTGKYARMRSAHTNDVKQ 953 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMPKFWSCYRGHTRWRKR 417 + + QK+ E I+ GK+P LP ++E W TW+P+ W + Sbjct 954 LTEVVQKVALESIVIWGKVPRFRLPIQKETWEAWWTDYWQATWIPE-WEYVNTPPLVKLW 1012 Query 418 NIIEE--VVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 +E+ + T+Y DG ++ K+G G++ G +K E TNQ+ EL+AI+ AL Sbjct 1013 YQLEQDPIPGAETFYVDGAANRETKLGKAGYVTDKGRQKIISLTETTNQKAELQAIQLAL 1072 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + D ++ I +I+E KK+++ + WVP HKGI Sbjct 1073 QDSEVEVNIVTDSQYALGIIQGQPDTS--ESEIVNQIIEELIKKEKVYLSWVPAHKGIGG 1130 Query 533 NEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 NE+IDK +S +FL +GI +EE Y Sbjct 1131 NEQIDKLVSSGIRKVLFL----DGIDKAQEEHEKY 1161 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 O_ANT70] Sequence ID: Q77373.3 Length: 1435 Range 1: 596 to 1161 Score:362 bits(929), Expect:1e-109, Method:Compositional matrix adjust., Identities:230/575(40%), Positives:341/575(59%), Gaps:26/575(4%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSG- 63 VKLK G GP V QWPL++EK++ LT I ++ +EGK+ + P NTPIF IKKK G Sbjct 596 VKLKPGMDGPKVKQWPLSKEKIEALTAICQEMEQEGKISRIGPENPYNTPIFAIKKKDGT 655 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T++ E QLG+PHPGGL++K+ VT+LD+GDAYF+ PL +R+YT Sbjct 656 KWRKLVDFRELNKRTQEFWEVQLGIPHPGGLKQKQSVTVLDVGDAYFSCPLDPDFRKYTA 715 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +IL+ + + +PE++ YMDD+Y+ Sbjct 716 FTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILDPFRRDNPELEICQYMDDLYV 775 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDL + +HR+ ++ L ++ Q+GFT P++K QK P W+G+ELHP W Q LP Sbjct 776 GSDLPLTEHRKRIELLREHLYQWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQSIQLP-- 833 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K T+N +QKL+G+L W I G + + KL+ G + L + E E R Sbjct 834 NKDVWTVNDIQKLIGKLNWASQIYQGIRVRELCKLIRGTKSLTEVVPLSREAELELEENR 893 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVN--VVHNIKNLSIPQQ 358 ++L++ + G YY DKD++ + G + Y +YQE+ K L + + +Q Sbjct 894 ERLKQPVHGVYYQPDKDLWVNIQKQGGEQWTYQIYQEEHKNLKTGKYTRQKASHTNDIRQ 953 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + + QK++QE II GK+P LP E W TW+P +F S W Sbjct 954 LAEVIQKVSQESIIIWGKLPKFKLPVTRETWETWWADYWQATWIPEWEFVSTPPLIKLWY 1013 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E ++ TYY DG ++ K+G G++ G +K K +E TNQ+ EL AI AL Sbjct 1014 RLE-SEPIMGAETYYVDGAANRETKLGKAGYVTEQGKQKIIKLDETTNQKAELMAILLAL 1072 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +T+N+VTDS+YA + + ++PI +I+E KK+++ + WVP HKGI Sbjct 1073 QDSKETVNIVTDSQYALGVISSQPTQS--ESPIVQQIIEELTKKEQVYLTWVPAHKGIGG 1130 Query 533 NEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 NE+IDK +S+ +FL EGI +E+ Y Sbjct 1131 NEKIDKLVSKDIRRVLFL----EGIDQAQEDHEKY 1161 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Simian immunodeficiency virus (ISOLATE GB1)] Sequence ID: P22382.2 Length: 1441 Range 1: 602 to 1171 Score:362 bits(928), Expect:1e-109, Method:Compositional matrix adjust., Identities:230/585(39%), Positives:337/585(57%), Gaps:38/585(6%) Query 1 PITKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKK 60 PITKVKLK G GP + QWPL++EK+ GL +I D+L EEGK+ + P NTPIF IKK Sbjct 602 PITKVKLKPGVDGPRIKQWPLSKEKIVGLQKICDRLEEEGKISRVDPGNNYNTPIFAIKK 661 Query 61 KS-GKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYR 119 K +WR LIDFRELNK T+D E QLG+PHP G++K K +T+LDIGDAYF+IPL YR Sbjct 662 KDKNEWRKLIDFRELNKLTQDFHELQLGIPHPAGIKKCKRITVLDIGDAYFSIPLDPDYR 721 Query 120 EYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMD 179 YT FT+ S NN P KRY + VLPQGWK SP ++Q T+ +LE + + HP +Q YMD Sbjct 722 PYTAFTVPSVNNQAPGKRYMYNVLPQGWKGSPCIFQGTVASLLEVFRKNHPTVQLYQYMD 781 Query 180 DIYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHT 239 D+++GSD ++H + + +L + + PE+K QK P W+G+ELHP WK +K Sbjct 782 DLFVGSDYTAEEHEKAIVELRALLMTWNLETPEKKYQKEPPFHWMGYELHPDKWKIEKVQ 841 Query 240 LPELTKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEW 298 LPEL + T+N++QKLVG+L W + G + KL+ G + + + E E+ Sbjct 842 LPELAEQP-TVNEIQKLVGKLNWAAQLYPGIKTKQLCKLIRGGLNITEKVTMTEEARLEY 900 Query 299 EACRKKL-EEMEGNYYNKDKDVYGQL---AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLS 354 E ++ L EE EG+YY+ +K++Y + GD + ++ ++G + + + + Sbjct 901 EQNKEILAEEQEGSYYDPNKELYVRFQKTTGGDISFQW----KQGNKVLRAGKYGKQKTA 956 Query 355 IPQQVIK---AAQKLTQEVIIRTGKIPWILLPGKE---EDWRLELQLGNITWMP--KFWS 406 ++K A QK+ +E I+ G +P + +P EDW E TW+P +F S Sbjct 957 HSNDLMKLAGATQKVGRESIVIWGFVPKMQIPTTREIWEDWWHEYW--QCTWIPEVEFIS 1014 Query 407 CYRGHTRWRKRNIIEEVVEG-PTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQ 462 W ++ E +EG TYY DG + +K+G G+I G ++ ++ TNQQ Sbjct 1015 TPMLEREW--YSLSPEPLEGVETYYVDGAANRDSKMGKAGYITDRGFQRVEEYLNTTNQQ 1072 Query 463 LELRAIEEALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVH 522 EL A++ AL+ +N+VTDS+Y L E +PI I+E+ K++I + Sbjct 1073 TELHAVKLALEDSGSYVNIVTDSQYVVGILASRPTE--TDHPIVKEIIELMKGKEKIYLS 1130 Query 523 WVPGHKGIPQNEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 W+P HKGI NE+IDK +S +FL + I P +EE Y Sbjct 1131 WLPAHKGIGGNEQIDKLVSSGIRKVLFL----QNIEPAQEEHEKY 1171 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:J_SE9173] Sequence ID: Q9WC63.3 Length: 1432 Range 1: 594 to 1159 Score:361 bits(927), Expect:2e-109, Method:Compositional matrix adjust., Identities:230/575(40%), Positives:337/575(58%), Gaps:26/575(4%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP + QWPLTEEK+K LT+I +L EEGK+ + P NTP+F IKKK S Sbjct 594 VKLKPGMDGPKIKQWPLTEEKIKALTQICAELEEEGKISRIGPENPYNTPVFAIKKKDST 653 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL+KKK VT+LD+GDAYF++PLYE +R+YT Sbjct 654 KWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLYEDFRKYTA 713 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +IL+ + +++PEI YMDD+Y+ Sbjct 714 FTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILKPFRERNPEIVIYQYMDDLYV 773 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI++HR +K+L ++ ++GF P++K QK P W+G+ELHP W Q LPE Sbjct 774 GSDLEIEQHRRKIKELREHLLKWGFYTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPE- 832 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K T+N +QKLVG+L W I G I + KL+ G + L + E + Sbjct 833 -KEDWTVNDIQKLVGKLNWASQIYPGIKIKELCKLIRGAKALTDIVPLTREAELELAENK 891 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YY+ +++ ++ G Y +YQE K L ++ +Q Sbjct 892 EILKEPVHGVYYDPARELIAEVQKQGLDQWTYQIYQEPFKNLKTGKYAKRRSAHTNDVKQ 951 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + + QK+ E I+ GK P LP ++E W TW+P +F + W Sbjct 952 LSQVVQKIALEAIVIWGKTPKFRLPIQKETWETWWTDYWQATWIPEWEFVNTPPLVKLWY 1011 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E ++ T+Y DG ++ KVG G++ G +K + TNQ+ EL+AI AL Sbjct 1012 QLE-KEPIMGAETFYVDGASNRETKVGKAGYVTDKGRQKVITLTDTTNQKTELQAIYLAL 1070 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + +N+VTDS+YA + D+ ++ + +I+E KK+++ + WVP HKGI Sbjct 1071 QDSGIEVNIVTDSQYALGIIQAQPDKS--ESELVNQIIEELIKKEKVYLSWVPAHKGIGG 1128 Query 533 NEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 NE++DK +S +FL +GI +EE Y Sbjct 1129 NEQVDKLVSSGIRKVLFL----DGIDKAQEEHEKY 1159 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 N_YBF106] Sequence ID: Q9IDV9.3 Length: 1449 Range 1: 607 to 1172 Score:362 bits(928), Expect:2e-109, Method:Compositional matrix adjust., Identities:231/575(40%), Positives:332/575(57%), Gaps:26/575(4%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLT EK++ L EI ++ +EGK+ + P NTPIF IKKK S Sbjct 607 VKLKPGMDGPRVKQWPLTAEKIEALREICTEMEKEGKISRIGPENPYNTPIFAIKKKDST 666 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T++ E QLG+PHP GL++KK VT+ D+GDAYF+ PL + +R+YT Sbjct 667 KWRKLVDFRELNKRTQEFWEVQLGIPHPAGLKQKKSVTVXDVGDAYFSCPLDKDFRKYTA 726 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +ILE + ++HPEI YMDD+Y+ Sbjct 727 FTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKKHPEIIIYQYMDDLYV 786 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HRE V++L ++ ++GFT P++K QK P W+G+ELHP W Q LPE Sbjct 787 GSDLEIAQHRETVEELRGHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIKLPE- 845 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K T+N +QKLVG+L W I G + + KL+ G + L + E R Sbjct 846 -KEVWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLIRGTKALTEVVTFTQEAELELAENR 904 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L+E + G YY+ K++ ++ G Y +YQE K L ++ ++ Sbjct 905 EILKEPLHGVYYDPGKELIAEIQKQGQGQWTYQIYQEPYKNLKTGKYAKXRSAHTNDIKE 964 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + QK+ E I+ GK P LP ++E W + TW+P +F + W Sbjct 965 LAAVVQKVATESIVIWGKTPKFKLPVQKEVWETWWTEHWQATWIPEWEFVNTPPLVKLWY 1024 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 + E + TYY DG K+ K+G GF+ G +K E TNQ+ EL+AI AL Sbjct 1025 QLE-TEPISGAETYYVDGAANKETKLGKAGFVTDRGRQKVVSIENTTNQKAELQAILLAL 1083 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 ++ Q N+VTDS+YA + D+ ++ + +I+E KK+R+ + WVP HKGI Sbjct 1084 QESGQEANIVTDSQYAMGIIHSQPDKS--ESDLVGQIIEELIKKERVYLSWVPAHKGIGG 1141 Query 533 NEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 NE++D +S +FL +GI +EE Y Sbjct 1142 NEQVDXLVSSGIRXVLFL----DGIEKAQEEHERY 1172 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Simian immunodeficiency virus (MM251 ISOLATE)] Sequence ID: P05897.3 Length: 1448 Range 1: 604 to 1170 Score:358 bits(919), Expect:3e-108, Method:Compositional matrix adjust., Identities:237/577(41%), Positives:333/577(57%), Gaps:27/577(4%) Query 3 TKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKS 62 KV LK G GP + QWPL++EK+ L EI +K+ ++G+L +APP NTP F IKKK Sbjct 604 VKVTLKPGKVGPKLKQWPLSKEKIVALREICEKMEKDGQLEEAPPTNPYNTPTFAIKKKD 663 Query 63 -GKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREY 121 KWRMLIDFRELN+ T+D TE QLG+PHP GL K+K +T+LDIGDAYF+IPL E +R+Y Sbjct 664 KNKWRMLIDFRELNRVTQDFTEVQLGIPHPAGLAKRKRITVLDIGDAYFSIPLDEEFRQY 723 Query 122 TCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDI 181 T FTL S NN P KRY +KVLPQGWK SP+++Q+TM+ +LE + + +P++ YMDDI Sbjct 724 TAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQYTMRHVLEPFRKANPDVTLVQYMDDI 783 Query 182 YIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLP 241 I SD +H +V L + GF+ PEEK QK P +W+G+EL P WK QK LP Sbjct 784 LIASDRTDLEHDRVVLQLKELLNSIGFSTPEEKFQKDPPFQWMGYELWPTKWKLQKIELP 843 Query 242 ELTKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEA 300 + + T T+N +QKLVG L W I G ++ +L+ G L E + E+ E+E Sbjct 844 Q--RETWTVNDIQKLVGVLNWAAQIYPGIKTKHLCRLIRGKMTLTEEVQWTEMAEAEYEE 901 Query 301 CRKKL-EEMEGNYYNKDKDVYGQLAWG-DKAIEYIVYQEKGKPLWVNVVHNIKNLSIP-- 356 + L +E EG YY + K + + D Y ++QE K L V IKN Sbjct 902 NKIILSQEQEGCYYQEGKPLEATVIKSQDNQWSYKIHQED-KILKVGKFAKIKNTHTNGV 960 Query 357 QQVIKAAQKLTQEVIIRTGKIPWILLPGKEEDW-RLELQLGNITWMPKFWSCYRGHTRWR 415 + + QK+ +E I+ G++P LP + + W + +TW+P++ Sbjct 961 RLLAHVIQKIGKEAIVIWGQVPKFHLPVERDVWEQWWTDYWQVTWIPEWDFISTPPLVRL 1020 Query 416 KRNIIEEVVEG-PTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEA 471 N++++ +EG TYYTDG K++K G G+I G +K + E+ TNQQ EL A A Sbjct 1021 VFNLVKDPIEGEETYYTDGSCNKQSKEGKAGYITDRGKDKVKVLEQTTNQQAELEAFLMA 1080 Query 472 L-KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGI 530 L GP+T N++ DS+Y + E ++ + +I+E KK I V WVP HKGI Sbjct 1081 LTDSGPKT-NIIVDSQYVMGIITGCPTES--ESRLVNQIIEEMIKKSEIYVAWVPAHKGI 1137 Query 531 PQNEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 N+EID +S+ +FL K I P +EE Y Sbjct 1138 GGNQEIDHLVSQGIRQVLFLEK----IEPAQEEHDKY 1170 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:F1_VI850] Sequence ID: Q9QSR3.3 Length: 1430 Range 1: 591 to 1157 Score:356 bits(913), Expect:2e-107, Method:Compositional matrix adjust., Identities:230/576(40%), Positives:332/576(57%), Gaps:27/576(4%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K LTEI ++ +EGK+ K P NTP+F IKKK S Sbjct 591 VKLKPGMDGPKVKQWPLTEEKIKALTEICLEMEKEGKISKIGPENPYNTPVFAIKKKDSS 650 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DF+ELNK+T+D E QLG+PHP GL+KKK VT+LD+GDAYF++PL + +++YT Sbjct 651 KWRKLVDFKELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFKKYTA 710 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +ILE + ++P+I YMDD+Y+ Sbjct 711 FTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRMKNPDIVIYQYMDDLYV 770 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR +++L ++ ++GFT P++K QK P W+G ELHP W Q LP Sbjct 771 GSDLEIGQHRTKIEELREHLLRWGFTTPDKKHQKEPPFLWMGHELHPDKWTVQPIQLP-- 828 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K + T+N +QKLVG+L W I G + + KL+ G + L + E R Sbjct 829 NKDSWTVNDIQKLVGKLNWASQIYPGIKVRPLCKLLRGAKALTDIVPLTAEAELELAKNR 888 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + L E + G YY+ KD+ ++ GD Y +YQ K L +++ +Q Sbjct 889 EILREPVHGVYYDPSKDLIAEIQKQGDGQWTYQIYQNPFKNLKTGKYAKVRSAHTNDVKQ 948 Query 359 VIKAAQKLTQEVIIRTGK-IPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRW 414 + +A QK+ E I+ GK P LP +E W TW+P +F + W Sbjct 949 LTEAVQKIALESIVIWGKRSPKFKLPILKETWDTWWTDYWQATWIPEWEFVNTPPLVKLW 1008 Query 415 RKRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEA 471 + E + T+Y DG ++ K G G++ G +K E TNQ+ EL+AI A Sbjct 1009 YQLE-TEPIAGADTFYVDGASNRETKKGKAGYVTDKGKQKVVSLTETTNQKAELQAIYLA 1067 Query 472 LKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIP 531 L+ +N+VTDS+YA + D+ ++ I +I+E +K+R+ + WVP HKGI Sbjct 1068 LQDSGSEVNIVTDSQYALGIIQAQPDKS--ESEIVNQIIEQLIQKERVYLSWVPAHKGIG 1125 Query 532 QNEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 NE++DK +S +FL +GI +EE Y Sbjct 1126 GNEQVDKLVSAGVRKILFL----DGIDKAQEEHEKY 1157 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [SIVcpz GAB1] Sequence ID: P17283.2 Length: 1384 Range 1: 546 to 1089 Score:355 bits(912), Expect:2e-107, Method:Compositional matrix adjust., Identities:225/549(41%), Positives:324/549(59%), Gaps:17/549(3%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPL+ EK+K LTEI ++ +EGK+ K P NTPIF IKKK S Sbjct 546 VKLKPGMDGPKVKQWPLSAEKIKALTEICQEMEKEGKISKIGPENPYNTPIFAIKKKDST 605 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL+KKK VT+LD+GDAYF+ PL + +R+YT Sbjct 606 KWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSCPLDKDFRKYTA 665 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SPS++Q +M +ILE + +++P+I YMDD+Y+ Sbjct 666 FTIPSINNETPGVRYQYNVLPQGWKGSPSIFQSSMTKILEPFREKNPDITIYQYMDDLYV 725 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR+ V++L ++ ++GFT P++K QK P W+G+ELHP W Q LPE Sbjct 726 GSDLEIDQHRKKVEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPE- 784 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K T+N +QKL+G+L W I G I + KL+ G ++L + E R Sbjct 785 -KEVWTVNDIQKLIGKLNWASQIYPGIKIKQLCKLIRGTKKLTDVVPLTPEAELELAENR 843 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--QQ 358 + + + G YY+ DK++ ++ G+ Y ++QE K L ++ +Q Sbjct 844 EIVSTPVHGVYYDPDKELIAEIQKQGNCQWTYQIFQEPHKNLKTGKYARQRSAHTNDIRQ 903 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL-ELQLGNITWMP--KFWSCYRGHTRWR 415 + +A QK+ E I+ GK P LP ++E W + TW+P +F + W Sbjct 904 LAEAVQKIATESIVIWGKTPKFRLPVQKESWEAWWAEYWQATWIPEWEFINTPPLVKLWY 963 Query 416 KRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 E + TYY DG ++ K G G++ G +K E TNQQ EL+A+ AL Sbjct 964 SLE-TEPIPTTDTYYVDGAANRETKTGKAGYVTDKGKQKIISLENTTNQQAELKALLLAL 1022 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 + Q +N+VTDS+Y + D ++ + +I+E KK++I + WVP HKGI Sbjct 1023 QDSDQQVNIVTDSQYVLGIIQSQPDHS--ESELVNQIIEELIKKEKIYLSWVPAHKGIGG 1080 Query 533 NEEIDKYIS 541 NE++DK +S Sbjct 1081 NEQVDKLVS 1089 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:G_92NG083] Sequence ID: O41798.3 Length: 1435 Range 1: 597 to 1162 Score:355 bits(912), Expect:2e-107, Method:Compositional matrix adjust., Identities:230/584(39%), Positives:331/584(56%), Gaps:44/584(7%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 VKLK G GP V QWPLTEEK+K LTEI + +EGK+ K P NTPIF IKKK S Sbjct 597 VKLKPGMDGPRVKQWPLTEEKIKALTEICKDMEKEGKISKIGPENPYNTPIFAIKKKDST 656 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTC 123 KWR L+DFRELNK+T+D E QLG+PHP GL+KK+ VT+LD+GDAYF++PL + +R+YT Sbjct 657 KWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKRSVTVLDVGDAYFSVPLDKDFRKYTA 716 Query 124 FTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYI 183 FT+ S NN P RY + VLPQGWK SP+++Q +M +ILE ++PE+ YMDD+Y+ Sbjct 717 FTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPSRTKNPEMVIYQYMDDLYV 776 Query 184 GSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPEL 243 GSDLEI +HR +++L ++ ++G T P++K QK P W+G+ELHP W Q LPE Sbjct 777 GSDLEIGQHRAKIEELREHLLKWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPE- 835 Query 244 TKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACR 302 K T+N +QKLVG+L W I G + ++ +L+ G + L + E R Sbjct 836 -KEDWTVNDIQKLVGKLNWASQIYPGIKVKHLCRLLRGAKALTDIVPLTAEAEMELAENR 894 Query 303 KKLEE-MEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVN--VVHNIKNLSIPQQ 358 + L+E + G Y++ K++ ++ G Y +YQE K L + + +Q Sbjct 895 EILKEPVHGVYHDPSKELIAEVQKQGPDQWTYQIYQEPYKNLKTGKYAKRGSAHTNDVKQ 954 Query 359 VIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL------------ELQLGNITWMPKFWS 406 + + QK+ E I+ GKIP LP ++E W + E + N + K W Sbjct 955 LTEVVQKIATEGIVIWGKIPKFKLPIRKETWEVWWTEYWQAAWIPEWEFVNTPPLVKLW- 1013 Query 407 CYRGHTRWRKRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQL 463 Y+ T E + TYY DG ++ K+G G + G +K E TNQ+ Sbjct 1014 -YQLET--------EPIPGAETYYVDGAANRETKLGKAGHVTDKGKQKIITLTETTNQKA 1064 Query 464 ELRAIEEALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHW 523 EL AI+ AL+ +N+VTDS+YA + D + + +I+E KK+++ + W Sbjct 1065 ELHAIQLALQDSRPEVNIVTDSQYALGIIQAQPDRS--GSELVNQIIEQLIKKEKVYLSW 1122 Query 524 VPGHKGIPQNEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 VP HKGI NE++DK +S +FL +GI +EE Y Sbjct 1123 VPAHKGIGGNEQVDKLVSSGIRKVLFL----DGIDKAQEEHERY 1162 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (ISOLATE SBLISY)] Sequence ID: P12451.3 Length: 1462 Range 1: 618 to 1184 Score:355 bits(912), Expect:3e-107, Method:Compositional matrix adjust., Identities:236/580(41%), Positives:334/580(57%), Gaps:33/580(5%) Query 3 TKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKS 62 KV LK G GP QWPLT EK++ L EI +K+ EG+L +APP NTP F IKKK Sbjct 618 VKVTLKPGKDGPKQRQWPLTREKIEALREICEKMEREGQLEEAPPTNPYNTPTFAIKKKD 677 Query 63 -GKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREY 121 KWRMLIDFRELNK T+D TE QLG+PHP GL KK+ +T+LD+GDAYF+IPLYE +R+Y Sbjct 678 KNKWRMLIDFRELNKVTQDFTEVQLGIPHPAGLAKKRRITVLDVGDAYFSIPLYEDFRQY 737 Query 122 TCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDI 181 T FTL S NN P KRY +KVLPQGWK SP+++Q+TM+++LE + + +P++ YMDDI Sbjct 738 TAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQYTMRQVLEPFRKANPDVIIVQYMDDI 797 Query 182 YIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLP 241 I SD +H ++V L + GF+ P+EK QK P +W+G+EL P WK QK LP Sbjct 798 LIASDRTDLEHDKVVLQLKELLNGLGFSTPDEKFQKDPPYQWMGYELWPTKWKLQKIQLP 857 Query 242 ELTKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEA 300 + K T+N +QKLVG L W I G ++ KL+ G ++ +++ + E E Sbjct 858 Q--KEVWTVNDIQKLVGVLNWAAQIYPGIKTKHLCKLIRG--KMTPTEEVQWTELAEAEL 913 Query 301 CRKKL---EEMEGNYYNKDKDVYGQLAWG-DKAIEYIVYQEKGKPLWVNVVHNIKNLSIP 356 K+ +E EG+YY ++K++ + D Y V+Q + K L V IKN Sbjct 914 EENKIILSQEQEGHYYQEEKELEATVQKDQDNQWTYKVHQGE-KILKVGKYAKIKNTHTN 972 Query 357 --QQVIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRLELQLGN---ITWMPKFWSCYRGH 411 + + + QK+ +E ++ G+IP LP + E W E N +TW+P + Sbjct 973 GVRLLAQVVQKIGKEALVIWGRIPKFHLPVERETW--EQWWDNYWQVTWIPDWDFVSTPP 1030 Query 412 TRWRKRNIIEEVVEGP-TYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRA 467 N++++ + G T+YTDG +++K G G+I G +K R E+ TNQQ EL A Sbjct 1031 LVRLAFNLVKDPIPGAETFYTDGSCNRQSKEGKAGYITDRGKDKVRILEQTTNQQAELEA 1090 Query 468 IEEALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGH 527 A+ +N+V DS+Y + E ++ I +I+E KK+ I V WVP H Sbjct 1091 FAMAVTDSGPKVNIVVDSQYVMGIVTGQPAES--ESRIVNKIIEEMIKKEAIYVAWVPAH 1148 Query 528 KGIPQNEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 KGI N+EID +S+ +FL E I P +EE Y Sbjct 1149 KGIGGNQEIDHLVSQGIRQVLFL----ERIEPAQEEHGKY 1184 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Simian immunodeficiency virus (MM142-83 ISOLATE)] Sequence ID: P05896.2 Length: 1448 Range 1: 597 to 1170 Score:355 bits(911), Expect:3e-107, Method:Compositional matrix adjust., Identities:235/583(40%), Positives:333/583(57%), Gaps:30/583(5%) Query 1 PITKVK-----LKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPI 55 PI KV+ LK G GP + QWPL++EK+ L EI +K+ ++G+L +APP NTP Sbjct 597 PIAKVEPVKSPLKPGKDGPKLKQWPLSKEKIVALREICEKMEKDGQLEEAPPTNPYNTPT 656 Query 56 FCIKKKS-GKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPL 114 F IKKK KWRMLIDFRELN+ T+D TE QLG+PHP GL K+K +T+LDIGDAYF+IPL Sbjct 657 FAIKKKDKNKWRMLIDFRELNRVTQDFTEVQLGIPHPAGLAKRKRITVLDIGDAYFSIPL 716 Query 115 YEPYREYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQF 174 E +R+YT FTL S NN P KRY +KVLPQGWK SP+++Q+TM+ +LE + + +P++ Sbjct 717 DEEFRQYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQYTMRHVLEPFRKANPDVTL 776 Query 175 GIYMDDIYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWK 234 YMDDI I SD +H +V L + GF+ PEEK QK P +W+G+EL P WK Sbjct 777 VQYMDDILIASDRTDLEHDRVVLQLKELLNSIGFSSPEEKFQKDPPFQWMGYELWPTKWK 836 Query 235 FQKHTLPELTKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEV 293 QK LP+ + T T+N +QKLVG L W I G ++ +L+ G L E + E+ Sbjct 837 LQKIELPQ--RETWTVNDIQKLVGVLNWAAQIYPGIKTKHLCRLIRGKMTLTEEVQWTEM 894 Query 294 HVKEWEACRKKL-EEMEGNYYNKDKDVYGQLAWG-DKAIEYIVYQEKGKPLWVNVVHNIK 351 E+E + L +E EG YY + K + + D Y ++QE K L V IK Sbjct 895 AEAEYEENKIILSQEQEGCYYQESKPLEATVIKSQDNQWSYKIHQED-KILKVGKFAKIK 953 Query 352 NLSIP--QQVIKAAQKLTQEVIIRTGKIPWILLPGKEEDW-RLELQLGNITWMPKFWSCY 408 N + + QK+ +E I+ G++P LP +++ W + +TW+P++ Sbjct 954 NTHTNGVRLLAHVIQKIGKEAIVIWGQVPKFHLPVEKDVWEQWWTDYWQVTWIPEWDFIS 1013 Query 409 RGHTRWRKRNIIEEVVEG-PTYYTDG--GKKNKVGSLGFIVSTG-EKFRKHEEGTNQQLE 464 N++++ +EG TYY DG K++K G G+I G +K + E+ TNQQ E Sbjct 1014 TPPLVRLVFNLVKDPIEGEETYYVDGSCSKQSKEGKAGYITDRGKDKVKVLEQTTNQQAE 1073 Query 465 LRAIEEALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWV 524 L A AL N++ DS+Y + E ++ + +I+E KK I V WV Sbjct 1074 LEAFLMALTDSGPKANIIVDSQYVMGIITGCPTES--ESRLVNQIIEEMIKKTEIYVAWV 1131 Query 525 PGHKGIPQNEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 P HKGI N+EID +S+ +FL K I P +EE + Y Sbjct 1132 PAHKGIGGNQEIDHLVSQGIRQVLFLEK----IEPAQEEHSKY 1170 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [SIVcpz TAN1] Sequence ID: Q8AII1.4 Length: 1462 Range 1: 621 to 1168 Score:355 bits(911), Expect:4e-107, Method:Compositional matrix adjust., Identities:220/553(40%), Positives:323/553(58%), Gaps:17/553(3%) Query 2 ITKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK 61 + KV+LKEG GP V QWPL++EK++ LTEI L +EGK+ P NTPIF IKKK Sbjct 621 VVKVQLKEGMDGPKVKQWPLSKEKIEALTEICKTLEKEGKISAVGPENPYNTPIFAIKKK 680 Query 62 -SGKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYRE 120 + KWR L+DFRELNK+T+D E QLG+PHP GL+K+ VT+LD+GDAYF+IPL +R+ Sbjct 681 DTSKWRKLVDFRELNKRTQDFWELQLGIPHPAGLRKRNMVTVLDVGDAYFSIPLDPDFRK 740 Query 121 YTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDD 180 YT FT+ S NN P KR+ + VLPQGWK SP+++Q +M +IL+ + ++HP++ YMDD Sbjct 741 YTAFTIPSLNNNTPGKRFQYNVLPQGWKGSPAIFQSSMTKILDPFRKEHPDVDIYQYMDD 800 Query 181 IYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTL 240 +YIGSDL ++HR+++K L ++ +G P++K Q+ P W+G+ELHP W Q TL Sbjct 801 LYIGSDLNEEEHRKLIKKLRQHLLTWGLETPDKKYQEKPPFMWMGYELHPNKWTVQNITL 860 Query 241 PELTKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWE 299 PE + T+ N +QKLVG+L W I G + KL+ G + L ++ E E Sbjct 861 PEPEQWTV--NHIQKLVGKLNWASQIYHGIKTKELCKLIRGVKGLTEPVEMTREAELELE 918 Query 300 ACRKKL-EEMEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIPQ 357 ++ L E+++G YY+ + + G Y +YQE+GK L + Sbjct 919 ENKQILKEKVQGAYYDPKLPLQAAIQKQGQGQWTYQIYQEEGKNLKTGKYAKSPGTHTNE 978 Query 358 --QVIKAAQKLTQEVIIRTGKIPWILLPGKEEDW-RLELQLGNITWMPKFWSCYRGHTRW 414 Q+ QK+ E II G +P LLP +E W + +TW+P+ W Sbjct 979 IRQLAGLIQKIGNESIIIWGIVPKFLLPVSKETWSQWWTDYWQVTWVPE-WEFINTPPLI 1037 Query 415 RK-RNIIEE-VVEGPTYYTDGG--KKNKVGSLGFIVSTGE-KFRKHEEGTNQQLELRAIE 469 R N++ + + E T+Y DG + +K G G++ + G + + E TNQQ EL A++ Sbjct 1038 RLWYNLLSDPIPEAETFYVDGAANRDSKKGRAGYVTNRGRYRSKDLENTTNQQAELWAVD 1097 Query 470 EALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKG 529 ALK +N+VTDS+Y L D+ +PI +I++ +K I + WVP HKG Sbjct 1098 LALKDSGAQVNIVTDSQYVMGVLQGLPDQS--DSPIVEQIIQKLTQKTAIYLAWVPAHKG 1155 Query 530 IPQNEEIDKYISE 542 I NEE+DK +S+ Sbjct 1156 IGGNEEVDKLVSK 1168 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr170Gag-Pol; Contains: RecName: Full=Matrix protein p16; Short=MA; Contains: RecName: Full=p2L; Contains: RecName: Full=Capsid protein p26; Short=CA; Contains: RecName: Full=p3; Contains: RecName: Full=Transframe peptide; AltName: Full=p11; Contains: RecName: Full=Protease; AltName: Full=P119; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; AltName: Full=P72; Contains: RecName: Full=Integrase; Short=IN [Bovine immunodeficiency virus R29] Sequence ID: P19560.2 Length: 1475 Range 1: 593 to 1232 Score:352 bits(903), Expect:5e-106, Method:Compositional matrix adjust., Identities:248/709(35%), Positives:370/709(52%), Gaps:77/709(10%) Query 13 GPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SGKWRMLIDF 71 GP VPQWPLT+EK + L EI+ L+ EGK+ +A NTP+F IKKK +G+WRML+DF Sbjct 593 GPKVPQWPLTKEKYQALKEIVKDLLAEGKISEAAWDNPYNTPVFVIKKKGTGRWRMLMDF 652 Query 72 RELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNN 131 RELNK T E GLP+P G+++ +H+T +DI DAYFTIPL+E +R +T F+++ N Sbjct 653 RELNKITVKGQEFSTGLPYPPGIKECEHLTAIDIKDAYFTIPLHEDFRPFTAFSVVPVNR 712 Query 132 LGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKK 191 GP +R+ W VLPQGW SP++YQ T Q+I+E+ + HP++ YMDD+ IGS+ + Sbjct 713 EGPIERFQWNVLPQGWVCSPAIYQTTTQKIIENIKKSHPDVMLYQYMDDLLIGSNRD--D 770 Query 192 HREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPELTKGTITLN 251 H++IV+++ + + YGF P+EK Q+ KW+GFEL P+ W+FQ L K +T+N Sbjct 771 HKQIVQEIRDKLGSYGFKTPDEKVQEER-VKWIGFELTPKKWRFQPRQLK--IKNPLTVN 827 Query 252 KLQKLVGELVWRQSIIGKSIPNILKLMEGDRELQSERKIEEVHVKEWEACRKKLEEME-G 310 +LQ+LVG VW Q + + + L+ LQ + ++ +K E KL++ E Sbjct 828 ELQQLVGNCVWVQPEVKIPLYPLTDLLRDKTNLQEKIQLTPEAIKCVEEFNLKLKDPEWK 887 Query 311 NYYNKDKDVYGQLAWGDKAIEYIVYQEKGKPLWVNVVH-NIKNLSIPQQVIKAAQKLTQE 369 + + ++ ++ + I + + Q+ G P+W V N + + +++++ +L + Sbjct 888 DRIREGAELVIKIQMVPRGIVFDLLQD-GNPIWGGVKGLNYDHSNKIKKILRTMNELNRT 946 Query 370 VIIRTGKIPWILLPGKEEDWRLELQ----LGNITWMPKFWSCYRGHTRWRKRNIIEEVVE 425 V+I TG+ LLPG EDW LQ L I + KF YR RW +I V E Sbjct 947 VVIMTGREASFLLPGSSEDWEAALQKEESLTQI-FPVKF---YRHSCRW--TSICGPVRE 1000 Query 426 G-PTYYTDGGKKNKVGSLGFIVSTGEKFRKHEEGTNQQLELRAIEEALKQGPQTMNLVTD 484 TYYTDGGKK K + + G K GTNQQ EL+AI AL GP MN++TD Sbjct 1001 NLTTYYTDGGKKGKTAAAVYWCE-GRTKSKVFPGTNQQAELKAICMALLDGPPKMNIITD 1059 Query 485 SRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQNEEIDKYISEIF 544 SRYA+E +R E + I I +I K +GV WVP HKGI N E D Sbjct 1060 SRYAYEG-MREEPETWAREGIWLEIAKILPFKQYVGVGWVPAHKGIGGNTEAD------- 1111 Query 545 LAKEGEGILPKREEDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAA 604 EG+ E+ A PE + ++PG+ + + + + + Q + A Sbjct 1112 -----EGVKKALEQMAPCSP--PEAILLKPGEKQNLETGIYMQGLRPQSFL-----PRAD 1159 Query 605 KGVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKT 664 V G ++DS ++Q+ + N + I + F L Sbjct 1160 LPVAITGTMVDS----ELQLQLLNIGTEHIRIQKDEVFMTCFL----------------- 1198 Query 665 ERGEKGFGSTGMYWIENIPLAEEDHTKWHQDARSLHLEFEIPRTAAEDI 713 ENIP A EDH +WH L +F +P+ A++I Sbjct 1199 ---------------ENIPSATEDHERWHTSPDILVRQFHLPKRIAKEI 1232 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Simian immunodeficiency virus (PBJ/BC13 ISOLATE) (SOOTY MANGABEY)] Sequence ID: P19505.2 Length: 1449 Range 1: 606 to 1171 Score:351 bits(901), Expect:8e-106, Method:Compositional matrix adjust., Identities:228/575(40%), Positives:328/575(57%), Gaps:25/575(4%) Query 4 KVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKS- 62 KV LK G GP + QWPL++EK+ L EI +K+ ++G+L +APP NTP F IKKK Sbjct 606 KVTLKPGKDGPKLRQWPLSKEKIIALREICEKMEKDGQLEEAPPTNPYNTPTFAIKKKDK 665 Query 63 GKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYT 122 KWRMLIDFRELNK T+D TE QLG+PHP GL K++ +T+LD+GDAYF+IPL E +R+YT Sbjct 666 NKWRMLIDFRELNKVTQDFTEVQLGIPHPAGLAKRRRITVLDVGDAYFSIPLDEEFRQYT 725 Query 123 CFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIY 182 FTL S NN P KRY +KVLPQGWK SP+++Q TM+ +LE + + +P++ YMDDI Sbjct 726 AFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQHTMRNVLEPFRKANPDVTLIQYMDDIL 785 Query 183 IGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPE 242 I SD +H +V L + GF+ PEEK QK P +W+G+EL P WK QK LP+ Sbjct 786 IASDRTDLEHDRVVLQLKELLNSIGFSTPEEKFQKDPPFQWMGYELWPTKWKLQKIELPQ 845 Query 243 LTKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEAC 301 + T T+N +QKLVG L W I G ++ +L+ G L E + E+ E+E Sbjct 846 --RETWTVNDIQKLVGVLNWAAQIYPGIKTKHLCRLIRGKMTLTEEVQWTEMAEAEYEEN 903 Query 302 RKKL-EEMEGNYYNKDKDVYGQLAWG-DKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--Q 357 + L +E EG YY + K + + D Y ++QE K L V IKN + Sbjct 904 KIILSQEQEGCYYQEGKPLEATVIKSQDNQWSYKIHQED-KILKVGKFAKIKNTHTNGVR 962 Query 358 QVIKAAQKLTQEVIIRTGKIPWILLPGKEEDW-RLELQLGNITWMPKFWSCYRGHTRWRK 416 + QK+ +E I+ G++P LP + E W + +TW+P++ Sbjct 963 LLAHVVQKIGKEAIVIWGQVPRFHLPVEREIWEQWWTDYWQVTWIPEWDFVSTPPLVRLV 1022 Query 417 RNIIEEVVEGP-TYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 N+++E ++G T+Y DG ++++ G G++ G +K + E+ TNQQ EL A AL Sbjct 1023 FNLVKEPIQGAETFYVDGSCNRQSREGKAGYVTDRGRDKAKLLEQTTNQQAELEAFYLAL 1082 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 N++ DS+Y + E ++ + +I+E KK+ I V WVP HKGI Sbjct 1083 ADSGPKANIIVDSQYVMGIVAGQPTES--ESRLVNQIIEEMIKKEAIYVAWVPAHKGIGG 1140 Query 533 NEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 N+E+D +S+ +FL K I P +EE Y Sbjct 1141 NQEVDHLVSQGIRQVLFLEK----IEPAQEEHEKY 1171 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Simian immunodeficiency virus (F236/SMH4 ISOLATE) (SOOTY MANGABEY)] Sequence ID: P12502.2 Length: 1449 Range 1: 606 to 1171 Score:351 bits(900), Expect:1e-105, Method:Compositional matrix adjust., Identities:226/575(39%), Positives:328/575(57%), Gaps:25/575(4%) Query 4 KVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKS- 62 KV LK G GP + QWPL++EK+ L EI +K+ ++G+L +APP NTP F IKKK Sbjct 606 KVTLKPGKEGPKLRQWPLSKEKIIALREICEKMEKDGQLEEAPPTNPYNTPTFAIKKKDK 665 Query 63 GKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYT 122 KWRMLIDFRELNK T+D TE QLG+PHP GL K++ +T+LD+GDAYF+IPL E +R+YT Sbjct 666 NKWRMLIDFRELNKVTQDFTEVQLGIPHPAGLAKRRRITVLDVGDAYFSIPLDEEFRQYT 725 Query 123 CFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIY 182 FTL S NN P KRY +KVLPQGWK SP+++Q+TM+ +LE + + +P++ YMDDI Sbjct 726 AFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQYTMRNVLEPFRKANPDVTLIQYMDDIL 785 Query 183 IGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPE 242 I SD +H +V L + GF+ PEEK QK P +W+G+EL P WK QK LP+ Sbjct 786 IASDRTDLEHDRVVLQLKELLNGIGFSTPEEKFQKDPPFQWMGYELWPTKWKLQKIELPQ 845 Query 243 LTKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEAC 301 + T T+N +QKLVG L W I G ++ +L+ G L E + E+ E+E Sbjct 846 --RETWTVNDIQKLVGVLNWAAQIYPGIKTKHLCRLIRGKMTLTEEVQWTEMAEAEYEEN 903 Query 302 RKKL-EEMEGNYYNKDKDVYGQLAWG-DKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--Q 357 + L +E EG YY + K + + D Y ++QE K L V +KN + Sbjct 904 KIILSQEQEGCYYQEGKPIEATVIKSQDNQWSYKIHQED-KVLKVGKFAKVKNTHTNGVR 962 Query 358 QVIKAAQKLTQEVIIRTGKIPWILLPGKEEDW-RLELQLGNITWMPKFWSCYRGHTRWRK 416 + QK+ +E ++ G++P LP + E W + +TW+P + Sbjct 963 LLAHVVQKIGKEALVIWGEVPKFHLPVEREIWEQWWTDYWQVTWIPDWDFVSTPPLVRLV 1022 Query 417 RNIIEEVVEGP-TYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEAL 472 N+++E ++G T+Y DG ++++ G G++ G +K + E+ TNQQ EL A AL Sbjct 1023 FNLVKEPIQGAETFYVDGSCNRQSREGKAGYVTDRGRDKAKLLEQTTNQQAELEAFYLAL 1082 Query 473 KQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQ 532 N++ DS+Y + E ++ + +I+E KK+ I V WVP HKGI Sbjct 1083 ADSGPKANIIVDSQYVMGIIAGQPTES--ESRLVNQIIEEMIKKEAIYVAWVPAHKGIGG 1140 Query 533 NEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 N+E+D +S+ +FL K I P +EE Y Sbjct 1141 NQEVDHLVSQGIRQVLFLKK----IEPAQEEHEKY 1171 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (ISOLATE BEN)] Sequence ID: P18096.4 Length: 1550 Range 1: 620 to 1191 Score:351 bits(901), Expect:2e-105, Method:Compositional matrix adjust., Identities:236/584(40%), Positives:339/584(58%), Gaps:31/584(5%) Query 4 KVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKS- 62 KV LK G GP + QWPLT+EK++ L EI +K+ +EG+L +APP NTP F IKKK Sbjct 620 KVTLKPGKDGPRLKQWPLTKEKIEALKEICEKMEKEGQLEEAPPTNPYNTPTFAIKKKDK 679 Query 63 GKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYT 122 KWRMLIDFRELNK T+D TE QLG+PHP GL KKK ++ILD+GDAYF+IPL+E +R+YT Sbjct 680 NKWRMLIDFRELNKVTQDFTEIQLGIPHPAGLAKKKRISILDVGDAYFSIPLHEDFRQYT 739 Query 123 CFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIY 182 FTL + NN+ P KRY +KVLPQGWK SP+++Q+TM+++LE + + +P++ YMDDI Sbjct 740 AFTLPAVNNMEPGKRYIYKVLPQGWKGSPAIFQYTMRQVLEPFRKANPDVILIQYMDDIL 799 Query 183 IGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPE 242 I SD +H ++V L + GF+ P+EK QK P +W+G EL P WK QK LP+ Sbjct 800 IASDRTGLEHDKVVLQLKELLNGLGFSTPDEKFQKDPPFQWMGCELWPTKWKLQKLQLPQ 859 Query 243 LTKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEAC 301 K T+N +QKLVG L W I G ++ +L+ G L E + E+ E E Sbjct 860 --KDIWTVNDIQKLVGVLNWAAQIYSGIKTKHLCRLIRGKMTLTEEVQWTELAEAELEEN 917 Query 302 RKKL-EEMEGNYYNKDKDVYG--QLAWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP-- 356 + L +E EG YY ++K++ Q + G + Y ++QE+ K L V IKN Sbjct 918 KIILSQEQEGYYYQEEKELEATIQKSQGHQWT-YKIHQEE-KILKVGKYAKIKNTHTNGV 975 Query 357 QQVIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRLELQLGN---ITWMPKFWSCYRGHTR 413 + + + QK+ +E ++ G+IP LP + E W E N +TW+P++ Sbjct 976 RLLAQVVQKIGKEALVIWGRIPKFHLPVERETW--EQWWDNYWQVTWIPEWDFVSTPPLV 1033 Query 414 WRKRNIIEEVVEGP-TYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIE 469 N++ + + G T+YTDG +++K G G++ G +K + E+ TNQQ EL Sbjct 1034 RLTFNLVGDPIPGAETFYTDGSCNRQSKEGKAGYVTDRGKDKVKVLEQTTNQQAELEVFR 1093 Query 470 EALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKG 529 AL +N++ DS+Y + E +N I +I+E KK+ + V WVP HKG Sbjct 1094 MALADSGPKVNIIVDSQYVMGIVAGQPTES--ENRIVNQIIEEMIKKEAVYVAWVPAHKG 1151 Query 530 IPQNEEIDKYISE-----IFLAKEGEGILPKREEDAGYDLICPE 568 I N+E+D +S+ +FL K I P +EE Y I E Sbjct 1152 IGGNQEVDHLVSQGIRQVLFLEK----IEPAQEEHEKYHSIIKE 1191 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (ISOLATE D194)] Sequence ID: P17757.3 Length: 1462 Range 1: 619 to 1184 Score:350 bits(899), Expect:2e-105, Method:Compositional matrix adjust., Identities:230/577(40%), Positives:334/577(57%), Gaps:29/577(5%) Query 4 KVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKS- 62 KV LK G GP + QWPLT+EK++ L EI +K+ EG+L +APP NTP F IKKK Sbjct 619 KVTLKPGKDGPRLKQWPLTKEKIEALKEICEKMEREGQLEEAPPTNPYNTPTFAIKKKDK 678 Query 63 GKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYT 122 KWRMLIDFRELN+ T+D TE QLG+PHP GL KKK +T+LD+GDAYF+IPL+E +R+YT Sbjct 679 NKWRMLIDFRELNRVTQDFTEIQLGIPHPAGLAKKKRITVLDVGDAYFSIPLHEDFRQYT 738 Query 123 CFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIY 182 FTL S NN P KRY +KVLPQGWK SP+++QF M++ILE + + +P++ YMDDI Sbjct 739 AFTLPSVNNAEPEKRYVYKVLPQGWKGSPAIFQFMMRQILEPFRKANPDVILIQYMDDIL 798 Query 183 IGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPE 242 I SD +H ++V L + GF+ P+EK QK P +W+G+EL P WK QK LP+ Sbjct 799 IASDRTGLEHDKVVLQLKELLNGLGFSTPDEKFQKDPPFQWMGYELWPTKWKLQKIQLPQ 858 Query 243 LTKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEAC 301 K T+N +QKLVG L W I G ++ KL+ G L E + E+ E E Sbjct 859 --KEIWTVNDIQKLVGVLNWAAQIYPGIKTKHLCKLIRGKMTLTEEVQWTELAEAELEEN 916 Query 302 RKKL-EEMEGNYYNKDKDVYGQLAWG-DKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--Q 357 + L +E EG+YY +++++ + D Y ++Q + + L V IKN + Sbjct 917 KIILSQEQEGSYYQEEEELEATVIKSQDNQWAYKIHQGE-RVLKVGKYAKIKNTHTNGVR 975 Query 358 QVIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRLELQLGN---ITWMPKFWSCYRGHTRW 414 + + QK+ +E ++ G++P LP + + W E N +TW+P++ Sbjct 976 LLAQVVQKIGKEALVIWGRVPKFHLPVERDTW--EQWWDNYWQVTWVPEWDFVSTPPLVR 1033 Query 415 RKRNIIEEVVEGP-TYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEE 470 N++ + + G T+YTDG +++K G G++ G ++ R E+ +NQQ EL A Sbjct 1034 LTFNLVGDPIPGTETFYTDGSCNRQSKEGKAGYVTDRGRDRVRVLEQTSNQQAELEAFAM 1093 Query 471 ALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGI 530 AL +N++ DS+Y + E +N I +I+E KK+ + V WVP HKGI Sbjct 1094 ALADSGPKVNIIVDSQYVMGIVAGQPTES--ENRIVNQIIEDMIKKEAVYVAWVPAHKGI 1151 Query 531 PQNEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 N+E+D +S+ +FL K I P +EE Y Sbjct 1152 GGNQEVDHLVSQGIRQVLFLEK----IEPAQEEHEKY 1184 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (ISOLATE ST)] Sequence ID: P20876.3 Length: 1463 Range 1: 620 to 1185 Score:350 bits(898), Expect:2e-105, Method:Compositional matrix adjust., Identities:236/578(41%), Positives:331/578(57%), Gaps:31/578(5%) Query 4 KVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKS- 62 K+ LK G GP + QWPLT+EK++ L EI +K+ EG+L +APP NTP F IKKK Sbjct 620 KIMLKPGKDGPKLRQWPLTKEKIEALKEICEKMEREGQLEEAPPTNPYNTPTFAIKKKDK 679 Query 63 GKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYT 122 KWRMLIDFRELNK T+D TE QLG+PHP GL KKK +T+LD+GDAYF+IPL+E +R+YT Sbjct 680 NKWRMLIDFRELNKVTQDFTEIQLGIPHPAGLAKKKRITVLDVGDAYFSIPLHEDFRQYT 739 Query 123 CFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIY 182 FTL S NN P KRY +KV PQGWK SP+++Q+TM+++LE + + +P+I YMDDI Sbjct 740 AFTLPSINNAEPGKRYIYKVSPQGWKGSPAIFQYTMRQVLEPFRKANPDIILIQYMDDIL 799 Query 183 IGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPE 242 I SD +H +V L + GF+ P+EK QK P +W+G+EL P WK Q+ LP+ Sbjct 800 IASDRTDLEHDRVVLQLKELLNGLGFSTPDEKFQKDPPYQWMGYELWPTKWKLQRIQLPQ 859 Query 243 LTKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEAC 301 K T+N +QKLVG L W I G N+ +L+ G L E + E+ E E Sbjct 860 --KEVWTVNDIQKLVGVLNWAAQIYPGIKTRNLCRLIRGKMTLTEEVQWTELAEAELEEN 917 Query 302 RKKL-EEMEGNYYNKDKDVYGQLAWG-DKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--Q 357 + L +E EG YY ++K++ + D Y ++Q GK L V +KN + Sbjct 918 KIILSQEQEGCYYQEEKELEATVQKDQDNQWTYKIHQ-GGKILKVGKYAKVKNTHTNGVR 976 Query 358 QVIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRLELQLGN---ITWMPKFWSCYRGHTRW 414 + + QK+ +E ++ G+IP LP + + W E N +TW+P W Sbjct 977 LLAQVVQKIGKEALVIWGRIPKFHLPVERDTW--EQWWDNYWQVTWIPD-WDFISTPPLV 1033 Query 415 R-KRNIIEEVVEGP-TYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIE 469 R N++++ + G T+YTDG K+++ G G+I G +K R E+ TNQQ EL A Sbjct 1034 RLVFNLVKDPILGAETFYTDGSCNKQSREGKAGYITDRGRDKVRLLEQTTNQQAELEAFA 1093 Query 470 EALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKG 529 A+ N++ DS+Y + E K I +I+E KK+ I V WVP HKG Sbjct 1094 MAVTDSGPKANIIVDSQYVMGIVAGQPTESESK--IVNQIIEEMIKKEAIYVAWVPAHKG 1151 Query 530 IPQNEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 I N+E+D +S+ +FL K I P +EE Y Sbjct 1152 IGGNQEVDHLVSQGIRQVLFLEK----IEPAQEEHEKY 1185 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-2 B_EHO] Sequence ID: Q89928.3 Length: 1464 Range 1: 617 to 1183 Score:349 bits(896), Expect:5e-105, Method:Compositional matrix adjust., Identities:230/586(39%), Positives:332/586(56%), Gaps:45/586(7%) Query 3 TKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKS 62 KV+LK GP + QWPL++EK+ L EI +K+ +EG+L +APP N+P F IKKK Sbjct 617 VKVQLKPEKDGPKIRQWPLSKEKILALKEICEKMEKEGQLEEAPPTNPYNSPTFAIKKKD 676 Query 63 -GKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREY 121 KWRMLIDFRELNK T++ TE QLG+PHP GL KK +T+LD+GDAYF++PL +R+Y Sbjct 677 KNKWRMLIDFRELNKVTQEFTEVQLGIPHPAGLASKKRITVLDVGDAYFSVPLDPDFRQY 736 Query 122 TCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDI 181 T FTL + NN P KRY +KVLPQGWK SP+++Q+TM ++L+ + + + ++ YMDDI Sbjct 737 TAFTLPAVNNAEPGKRYLYKVLPQGWKGSPAIFQYTMAKVLDPFRKANNDVTIIQYMDDI 796 Query 182 YIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLP 241 + SD +H +V L + GF+ PEEK QK P KW+G+EL P+ WK QK LP Sbjct 797 LVASDRSDLEHDRVVSQLKELLNNMGFSTPEEKFQKDPPFKWMGYELWPKKWKLQKIQLP 856 Query 242 ELTKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEA 300 E K T+N +QKLVG L W + G +I KL+ G L E + E+ E++ Sbjct 857 E--KEVWTVNDIQKLVGVLNWAAQLFPGIKTRHICKLIRGKMTLTEEVQWTELAEAEFQE 914 Query 301 CRKKLE-EMEGNYYNK--------DKDVYGQLAW----GDKAIEYIVYQEKGKPLWVNVV 347 + LE E EG+YY + K++ Q + GDK ++ Y K K N V Sbjct 915 NKIILEQEQEGSYYKEGVPLEATVQKNLANQWTYKIHQGDKILKVGKY-AKVKNTHTNGV 973 Query 348 HNIKNLSIPQQVIKAAQKLTQEVIIRTGKIPWILLPGKEEDW-RLELQLGNITWMPKFWS 406 + ++ QK+ +E ++ G+IP LP + E W + +TW+P+ W Sbjct 974 RLLAHV---------VQKIGKEALVIWGEIPMFHLPVERETWDQWWTDYWQVTWIPE-WD 1023 Query 407 CYRGHTRWR-KRNIIEEVVEG-PTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQ 461 R N++++ +EG TYYTDG K +K G G++ G +K + E+ TNQ Sbjct 1024 FVSTPPLIRLAYNLVKDPLEGVETYYTDGSCNKASKEGKAGYVTDRGKDKVKPLEQTTNQ 1083 Query 462 QLELRAIEEALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGV 521 Q EL A AL+ +N++ DS+Y + E ++PI I+E KK++I V Sbjct 1084 QAELEAFALALQDSGPQVNIIVDSQYVMGIVAAQPTE--TESPIVREIIEEMIKKEKIYV 1141 Query 522 HWVPGHKGIPQNEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 WVP HKG+ N+E+D +S+ +FL K I P +EE Y Sbjct 1142 GWVPAHKGLGGNQEVDHLVSQGIRQILFLEK----IEPAQEEHEKY 1183 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (ISOLATE GHANA-1)] Sequence ID: P18042.4 Length: 1464 Range 1: 621 to 1186 Score:348 bits(894), Expect:8e-105, Method:Compositional matrix adjust., Identities:232/577(40%), Positives:334/577(57%), Gaps:29/577(5%) Query 4 KVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKS- 62 KV LK G GP + QWPLT+EK++ L EI +K+ +EG+L +APP NTP F IKKK Sbjct 621 KVTLKPGKDGPRLRQWPLTKEKIEALREICEKMEKEGQLEEAPPTNPYNTPTFAIKKKDK 680 Query 63 GKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYT 122 KWRMLIDFRELN+ T+D TE QLG+PHP GL KKK +T+LD+GDAYF+IPL+E +R+YT Sbjct 681 NKWRMLIDFRELNRVTQDFTEIQLGIPHPAGLAKKKRITVLDVGDAYFSIPLHEDFRQYT 740 Query 123 CFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIY 182 FTL S NN P KRY +KVLPQGWK SP+++Q TM+++LE + + +P++ YMDDI Sbjct 741 AFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQHTMRQVLEPFRKANPDVILIQYMDDIL 800 Query 183 IGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPE 242 I SD +H ++V L + GF+ P+EK QK P +W+G+EL P WK QK LP+ Sbjct 801 IASDRTGLEHDKVVLQLKELLNGLGFSTPDEKFQKDPPLQWMGYELWPTKWKLQKLQLPQ 860 Query 243 LTKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEAC 301 K T+N +QKLVG L W I G ++ +L++G L E + E+ E E Sbjct 861 --KEIWTVNDIQKLVGVLNWAAQIYPGIKTKHLCRLIKGKMTLTEEVQWTELAEAELEEN 918 Query 302 RKKL-EEMEGNYYNKDKDVYGQLAWG-DKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--Q 357 + L +E EG YY ++K++ + D Y ++QE+ K L V IKN + Sbjct 919 KIILSQEQEGYYYQEEKELEATIQKNQDNQWTYKIHQEE-KILKVGKYAKIKNTHTNGVR 977 Query 358 QVIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRLELQLGN---ITWMPKFWSCYRGHTRW 414 + + QK+ +E ++ G+IP LP + E W E N +TW+P++ Sbjct 978 LLAQVVQKIGKEALVIWGRIPKFHLPVERETW--EQWWDNYWQVTWIPEWDFVSTPPLVR 1035 Query 415 RKRNIIEEVVEGP-TYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEE 470 N++ + + G T+YTDG +++K G ++ G +K R E TNQQ EL A Sbjct 1036 LTFNLVGDPIPGAETFYTDGSCNRQSKEGKARYVTDRGRDKVRVLERTTNQQAELEAFAM 1095 Query 471 ALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGI 530 L +N++ DS+Y ++ E ++ I +I+E KK+ + V WVP HKGI Sbjct 1096 TLTDSGPKVNIIVDSQYVMGIVVGQPTES--ESRIVNQIIEDMIKKEAVYVAWVPAHKGI 1153 Query 531 PQNEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 N+E+D +S+ +FL E I P +EE Y Sbjct 1154 GGNQEVDHLVSQGIRQVLFL----ERIEPAQEEHEKY 1186 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (ISOLATE NIH-Z)] Sequence ID: P05962.3 Length: 1461 Range 1: 618 to 1183 Score:348 bits(894), Expect:8e-105, Method:Compositional matrix adjust., Identities:233/579(40%), Positives:333/579(57%), Gaps:33/579(5%) Query 4 KVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKS- 62 K+ LK G GP + QWPLT+EK++ L EI +K+ +EG+L +APP NTP F IKKK Sbjct 618 KIMLKPGKDGPRLKQWPLTKEKIEALKEICEKMEKEGQLEEAPPTNPYNTPTFAIKKKDK 677 Query 63 GKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYT 122 KWRMLIDFRELNK T+D TE QLG+PHP GL KK+ +T+LD+GDAYF+IPL+E +R+YT Sbjct 678 NKWRMLIDFRELNKVTQDFTEIQLGIPHPAGLAKKRRITVLDVGDAYFSIPLHEDFRQYT 737 Query 123 CFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIY 182 FTL S NN P KRY +KVLPQGWK SP+++Q+TM++ILE + + + ++ YMDDI Sbjct 738 AFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQYTMRQILEPFRKANEDVIIIQYMDDIL 797 Query 183 IGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPE 242 I SD +H ++V L + GF+ P+EK QK P +W+G+EL P WK QK LP+ Sbjct 798 IASDRTDLEHDKVVLQLKELLNGLGFSTPDEKFQKDPPYRWMGYELWPTKWKLQKIQLPQ 857 Query 243 LTKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEAC 301 K T+N +QKLVG L W I G ++ +L+ G L E + E+ E E Sbjct 858 --KEVWTVNDIQKLVGVLNWAAQIYPGIKTKHLCRLIRGKMTLTEEVQWTELAEAELEEN 915 Query 302 RKKL-EEMEGNYYNKDKDVYGQLAWG-DKAIEYIVYQE----KGKPLWVNVVHNIKNLSI 355 R L ++ EG+YY ++K + + D Y V+Q KG + + + + + + Sbjct 916 RIILSQKQEGHYYQEEKKLEATVQKDQDNQWTYKVHQGEKILKGGKICKDKKYPYQRVRL 975 Query 356 PQQVIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRLELQLGN---ITWMPKFWSCYRGHT 412 QV+ QK+ +E ++ G+IP LP + + W E N +TW+P + Sbjct 976 LAQVV---QKIGKEALVIWGRIPKFHLPVERDTW--EQWWDNYWQVTWIPDWDFVSTPPL 1030 Query 413 RWRKRNIIEEVVEGP-TYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAI 468 N++ E V G T+YTDG +++K G G+I G ++ + E+ TNQQ EL A Sbjct 1031 VRLAFNLVGEPVPGAETFYTDGSCNRQSKEGKAGYITDRGRDRVKVLEQTTNQQAELEAF 1090 Query 469 EEALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHK 528 AL N++ DS+Y + E +N I +I+E KK+ I V WVP HK Sbjct 1091 AMALTDSGPKANIIVDSQYVMGIVAGQPTES--ENRIVNQIIEEMIKKEAIYVAWVPAHK 1148 Query 529 GIPQNEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 GI N+E+D +S+ +FL K I P +EE Y Sbjct 1149 GIGGNQEVDHLVSQGIRQVLFLEK----IEPAQEEHEKY 1183 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (ISOLATE CAM2)] Sequence ID: P24107.3 Length: 1462 Range 1: 620 to 1184 Score:348 bits(894), Expect:1e-104, Method:Compositional matrix adjust., Identities:232/577(40%), Positives:334/577(57%), Gaps:30/577(5%) Query 4 KVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKS- 62 K+ LK G GP + QWPLT+EK++ L EI +K+ +EG+L +APP NTP F I+KK Sbjct 620 KIMLKPGKDGPRLRQWPLTKEKIEALKEICEKMEKEGQLEEAPPTNPYNTPTFAIRKKDK 679 Query 63 GKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYT 122 KWRMLIDFRELNK T+D TE QLG+PHP GL KK+ +T+LD+GDAYF+IPL+E +R+YT Sbjct 680 NKWRMLIDFRELNKVTQDFTEIQLGIPHPAGLAKKRRITVLDVGDAYFSIPLHEDFRQYT 739 Query 123 CFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIY 182 FTL S NN P KRY +KVLPQGWK SP+++Q+TM+++LE + + + ++ YMDDI Sbjct 740 AFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQYTMRQVLEPFRKANSDVIIIQYMDDIL 799 Query 183 IGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPE 242 I SD +H ++V L + GF+ P+EK QK P +W+G+EL P WK QK LP+ Sbjct 800 IASDRTDLEHDKVVLQLKELLNNLGFSTPDEKFQKDPPYRWMGYELWPTKWKLQKIQLPQ 859 Query 243 LTKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEAC 301 K T+N +QKLVG L W I G ++ +L+ G L E + E+ E E Sbjct 860 --KEVWTVNDIQKLVGVLNWAAQIYPGIKTKHLCRLIRGKMTLTEEVQWTELAEAELEEN 917 Query 302 RKKL-EEMEGNYYNKDKDVYGQLAWG-DKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--Q 357 R L +E EG+YY ++K++ + D Y ++QE+ K L V IK+ + Sbjct 918 RIILSQEQEGHYYQEEKELEATVQKDQDNQWTYKIHQEE-KILKVGKYAKIKHTHTNGVK 976 Query 358 QVIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRLELQLGN---ITWMPKFWSCYRGHTRW 414 + + QK+ +E ++ G+IP LP + E W E N +TW+P + Sbjct 977 LLAQVVQKIGKEALV-IGRIPKFHLPVEREVW--EQWWDNYWQVTWIPDWDFVSTPPLVR 1033 Query 415 RKRNIIEEVVEGP-TYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEE 470 N++ + + G T+YTDG +++K G G++ G +K + E+ TNQQ EL A Sbjct 1034 LAFNLVGDPIPGTETFYTDGSCNRQSKEGKAGYVTDRGRDKVKILEQTTNQQAELEAFAM 1093 Query 471 ALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGI 530 AL N++ DS+Y + E +N I +I+E KK+ I V WVP HKGI Sbjct 1094 ALTDSGPKANIIVDSQYVMGIVAGQPTES--ENRIVNQIIEEMIKKEAIYVAWVPAHKGI 1151 Query 531 PQNEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 N+E+D +S+ +FL K I P +EE Y Sbjct 1152 GGNQEVDHLVSQGIRQVLFLEK----IEPAQEEHEKY 1184 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-2 B_UC1] Sequence ID: Q76634.3 Length: 1471 Range 1: 619 to 1185 Score:347 bits(889), Expect:4e-104, Method:Compositional matrix adjust., Identities:227/579(39%), Positives:330/579(56%), Gaps:31/579(5%) Query 3 TKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKS 62 KVKLK G GP + QWPL++EK+ L EI +K+ +EG+L +APP NTP F IKK+ Sbjct 619 VKVKLKPGKDGPKIRQWPLSKEKILALKEICEKMEKEGQLEEAPPTNPYNTPTFAIKKRD 678 Query 63 -GKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREY 121 KWRMLIDFRELNK T+D TE QLG+PHP GL +K+ +T+LD+GDAYF+IPL +R+Y Sbjct 679 KNKWRMLIDFRELNKVTQDFTEVQLGIPHPAGLAEKRRITVLDVGDAYFSIPLDPNFRQY 738 Query 122 TCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDI 181 T FTL S NN P KRY +KVLPQGWK SP+++Q++M+++L+ + + + ++ YMDDI Sbjct 739 TAFTLPSINNAEPGKRYIYKVLPQGWKGSPAIFQYSMRKVLDPFRKANSDVIIIQYMDDI 798 Query 182 YIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLP 241 I SD +H +V L + GF+ PEEK QK P KW+G+EL P+ WK QK LP Sbjct 799 LIASDRSDLEHDRVVSQLKELLNDMGFSTPEEKFQKDPPFKWMGYELWPKRWKLQKIQLP 858 Query 242 ELTKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEA 300 E K T+N +QKLVG L W + G +I KL+ G L E + E+ E + Sbjct 859 E--KEVWTVNDIQKLVGVLNWAAQLFPGIKTRHICKLIRGKMTLTEEVQWTELAEAELQE 916 Query 301 CRKKLE-EMEGNYYNK----DKDVYGQLAWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSI 355 + LE E EG+YY + + V LA Y ++Q + L V +KN Sbjct 917 NKIILEQEQEGSYYKEGVPLEATVQKNLA---NQWTYKIHQ-GNRILKVGKYAKVKNTHT 972 Query 356 P--QQVIKAAQKLTQEVIIRTGKIPWILLPGKEEDW-RLELQLGNITWMPKFWSCYRGHT 412 + + QK+ +E ++ G+IP LP + E W + +TW+P++ Sbjct 973 NGVRLLAHVVQKIGKEALVIWGEIPVFHLPVERETWDQWWTDYWQVTWIPEWDFVSTPPL 1032 Query 413 RWRKRNIIEEVVEG-PTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAI 468 N++++ +E TYYTDG + +K G G++ G +K + E+ TNQQ EL A Sbjct 1033 VRLAYNLVKDPLEKVETYYTDGSCNRASKEGKAGYVTDRGKDKVKVLEQTTNQQAELEAF 1092 Query 469 EEALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHK 528 AL+ +N++ DS+Y + E ++P+ +I+E KK+ I V WVP H+ Sbjct 1093 ALALQDSGPQVNIIVDSQYVMGIVAGQPTE--TESPLVNQIIEEMIKKEAIYVGWVPAHR 1150 Query 529 GIPQNEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 G+ N+E+D +S+ +FL K I P +EE Y Sbjct 1151 GLGGNQEVDHLVSQGIRQVLFLEK----IEPAQEEHEKY 1185 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (isolate KR)] Sequence ID: Q74120.3 Length: 1463 Range 1: 620 to 1185 Score:346 bits(888), Expect:6e-104, Method:Compositional matrix adjust., Identities:235/577(41%), Positives:328/577(56%), Gaps:29/577(5%) Query 4 KVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKS- 62 KV LK G GP V QWPLT+EK++ L EI +K+ EG+L +APP NTP F IKKK Sbjct 620 KVILKPGKDGPKVRQWPLTKEKIEALKEICEKMEREGQLEEAPPTNPYNTPTFAIKKKDK 679 Query 63 GKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYT 122 KWRMLIDFRELNK T++ TE QLG+PHP GL KK+ +T+LDIGDAYF+IPL+E +R+YT Sbjct 680 NKWRMLIDFRELNKVTQEFTEIQLGIPHPAGLAKKRRITVLDIGDAYFSIPLHEDFRQYT 739 Query 123 CFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIY 182 FTL + NN P KRY +KVLPQGWK SP+++Q TM+++LE + + +P++ YMDDI Sbjct 740 AFTLPTVNNAEPGKRYIYKVLPQGWKGSPAIFQHTMRQVLEPFRKANPDVILVQYMDDIL 799 Query 183 IGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPE 242 I SD +H V L + GF+ P+EK QK P KW+G+EL P WK QK LP+ Sbjct 800 IASDRTDLEHDRTVLQLKELLNGLGFSTPDEKFQKDPPYKWMGYELWPTKWKLQKIQLPQ 859 Query 243 LTKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEAC 301 K T+N +QKLVG L W I G ++ +L+ G L E + E+ E E Sbjct 860 --KEVWTVNDIQKLVGVLNWAAQIYPGIKTKHLCRLIRGKMTLTEEVQWTELAEAELEEN 917 Query 302 RKKL-EEMEGNYYNKDKDVYGQLAWG-DKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--Q 357 + L +E EG YY ++K++ + D Y ++Q + K L V IKN + Sbjct 918 KIILSQEQEGCYYQEEKELEATVQKDQDNQWTYKIHQGE-KILKVGKYAKIKNTHTNGVR 976 Query 358 QVIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRLELQLGN---ITWMPKFWSCYRGHTRW 414 + QK+ +E ++ G+IP LP + E W E N +TW+P + Sbjct 977 LLAHVVQKIGKEALVIWGRIPKFHLPVERETW--EQWWDNYWQVTWIPDWDFVSTPPLVR 1034 Query 415 RKRNIIEEVVEG-PTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEE 470 N++++ + G T+YTDG +++K G G+I G +K R E+ TNQQ EL A Sbjct 1035 LAFNLVKDPIPGEETFYTDGSCNRQSKEGKAGYITDRGRDKVRILEQTTNQQAELEAFAM 1094 Query 471 ALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGI 530 AL N++ DS+Y + E K + +I+E KK+ + V WVP HKGI Sbjct 1095 ALTDSGPKANIIVDSQYVMGIVAGQPTESESK--LVNQIIEEMIKKETLYVAWVPAHKGI 1152 Query 531 PQNEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 N+E+D +S+ +FL K I P +EE Y Sbjct 1153 GGNQEVDHLVSQGIRQVLFLEK----IEPAQEEHEKY 1185 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (ISOLATE ROD)] Sequence ID: P04584.3 Length: 1464 Range 1: 621 to 1186 Score:345 bits(886), Expect:1e-103, Method:Compositional matrix adjust., Identities:232/577(40%), Positives:330/577(57%), Gaps:29/577(5%) Query 4 KVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKS- 62 K+ LK G GP + QWPLT+EK++ L EI +K+ +EG+L +APP NTP F IKKK Sbjct 621 KIMLKPGKDGPKLRQWPLTKEKIEALKEICEKMEKEGQLEEAPPTNPYNTPTFAIKKKDK 680 Query 63 GKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYT 122 KWRMLIDFRELNK T+D TE QLG+PHP GL KK+ +T+LD+GDAYF+IPL+E +R YT Sbjct 681 NKWRMLIDFRELNKVTQDFTEIQLGIPHPAGLAKKRRITVLDVGDAYFSIPLHEDFRPYT 740 Query 123 CFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIY 182 FTL S NN P KRY +KVLPQGWK SP+++Q TM+++LE + + + ++ YMDDI Sbjct 741 AFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQHTMRQVLEPFRKANKDVIIIQYMDDIL 800 Query 183 IGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPE 242 I SD +H +V L + GF+ P+EK QK P W+G+EL P WK QK LP+ Sbjct 801 IASDRTDLEHDRVVLQLKELLNGLGFSTPDEKFQKDPPYHWMGYELWPTKWKLQKIQLPQ 860 Query 243 LTKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEAC 301 K T+N +QKLVG L W + G ++ +L+ G L E + E+ E E Sbjct 861 --KEIWTVNDIQKLVGVLNWAAQLYPGIKTKHLCRLIRGKMTLTEEVQWTELAEAELEEN 918 Query 302 RKKL-EEMEGNYYNKDKDVYGQLAWG-DKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--Q 357 R L +E EG+YY ++K++ + + Y ++QE+ K L V +KN + Sbjct 919 RIILSQEQEGHYYQEEKELEATVQKDQENQWTYKIHQEE-KILKVGKYAKVKNTHTNGIR 977 Query 358 QVIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRLELQLGN---ITWMPKFWSCYRGHTRW 414 + + QK+ +E ++ G+IP LP + E W E N +TW+P + Sbjct 978 LLAQVVQKIGKEALVIWGRIPKFHLPVEREIW--EQWWDNYWQVTWIPDWDFVSTPPLVR 1035 Query 415 RKRNIIEEVVEGP-TYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEE 470 N++ + + G T+YTDG +++K G G++ G +K +K E+ TNQQ EL A Sbjct 1036 LAFNLVGDPIPGAETFYTDGSCNRQSKEGKAGYVTDRGKDKVKKLEQTTNQQAELEAFAM 1095 Query 471 ALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGI 530 AL +N++ DS+Y E K I +I+E KK+ I V WVP HKGI Sbjct 1096 ALTDSGPKVNIIVDSQYVMGISASQPTESESK--IVNQIIEEMIKKEAIYVAWVPAHKGI 1153 Query 531 PQNEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 N+E+D +S+ +FL K I P +EE Y Sbjct 1154 GGNQEVDHLVSQGIRQVLFLEK----IEPAQEEHEKY 1186 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Simian immunodeficiency virus (AGM155 ISOLATE)] Sequence ID: P27973.2 Length: 1470 Range 1: 620 to 1167 Score:335 bits(859), Expect:5e-100, Method:Compositional matrix adjust., Identities:217/555(39%), Positives:319/555(57%), Gaps:20/555(3%) Query 1 PITKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKK 60 PIT V+LKEG GP + QWPL++EK+ L EI L EEGKL + NTP+FCI+K Sbjct 620 PITPVRLKEGARGPRLKQWPLSKEKIIALQEICKTLEEEGKLSRVGGDNAYNTPVFCIRK 679 Query 61 KS-GKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYR 119 K +WRML+DFRELNK T+D E QLG+PHP GL+K K +TI+D+GDAY++IPL +R Sbjct 680 KDKSQWRMLVDFRELNKATQDFFEVQLGIPHPAGLKKMKQITIIDVGDAYYSIPLDPEFR 739 Query 120 EYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMD 179 +YT FT+ + NN GP RY + LPQGWK SP+++Q T +ILE+ ++ ++ YMD Sbjct 740 KYTAFTIPTVNNEGPGIRYQFNCLPQGWKGSPTIFQNTASKILEEIKKELKQLTIVQYMD 799 Query 180 DIYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHT 239 D+++GS E KH ++V+ L N + ++G PE+K Q+ P +W+G++L P WK Q Sbjct 800 DLWVGSQEEGPKHDQLVQTLRNRLQEWGLETPEKKVQREPPFEWMGYKLWPHKWKLQSIE 859 Query 240 LPELTKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEW 298 L + K T+N LQKLVG+L W + G NI KL+ G + L + E+ Sbjct 860 LEK--KEQWTVNDLQKLVGKLNWAAQLYPGLRTKNICKLLRGKKNLLDVVEWTPEAEAEY 917 Query 299 EACRKKLE-EMEGNYYNKDKDVYGQL-AWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP 356 E ++ L+ E EG YY +K + + GD Y QE GK L V K Sbjct 918 EENKEILKTEQEGTYYAPEKPLRAAVQKLGDGQWSYQFKQE-GKILKVGKFAKQKATHTN 976 Query 357 QQVIKAA--QKLTQEVIIRTGKIPWILLPGKEEDW-RLELQLGNITWMPK--FWSCYRGH 411 + + A QK+ +E ++ G++P LP + + W + ++W+P+ F S Sbjct 977 ELRVLAGVVQKIGKEALVIWGQLPTFELPVERDTWEQWWADYWQVSWIPEWDFVSVPPLV 1036 Query 412 TRWRKRNIIEEVVEG-PTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRA 467 T W + +E + G YY DG +++K G G+I G ++ ++ E TNQQ EL A Sbjct 1037 TLW--YTLTKEPIPGEDVYYVDGACNRQSKEGKAGYITQQGKQRVQQLENTTNQQAELTA 1094 Query 468 IEEALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGH 527 I+ AL+ +N+VTDS+YA L + +P+ +I+ +K+ I + WVP H Sbjct 1095 IKMALEDSGPKVNIVTDSQYAMGILTAQPTQS--DSPLVEQIIAQMVQKEAIYLQWVPAH 1152 Query 528 KGIPQNEEIDKYISE 542 KGI NEEIDK +S+ Sbjct 1153 KGIGGNEEIDKLVSK 1167 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Simian immunodeficiency virus (isolate AGM / clone GRI-1)] Sequence ID: Q02836.2 Length: 1472 Range 1: 617 to 1163 Score:329 bits(843), Expect:9e-98, Method:Compositional matrix adjust., Identities:204/552(37%), Positives:316/552(57%), Gaps:17/552(3%) Query 3 TKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKS 62 TKV+LKEG GP + QWPL+ EK++ LTEI ++ EEGKL + NTP+F IKKK Sbjct 617 TKVQLKEGKDGPKLKQWPLSREKIEALTEICKQMEEEGKLSRIGGENPYNTPVFAIKKKD 676 Query 63 -GKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREY 121 +WRML+DFRELNK T+D E QLG+PHP GLQKKK +T++DIGDAY++IPL + +R+Y Sbjct 677 KTQWRMLVDFRELNKATQDFFEVQLGIPHPAGLQKKKQITVIDIGDAYYSIPLCKEFRKY 736 Query 122 TCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDI 181 T FT+ S NN GP RY + LPQGWK SP+++Q T ILE+ + P ++ YMDD+ Sbjct 737 TAFTIPSVNNTGPGIRYQFNCLPQGWKGSPTIFQNTAANILEEIKRHTPGLEIVQYMDDL 796 Query 182 YIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLP 241 ++ SD + +H + V + + + G P++K Q+ P +W+G++LHP W K LP Sbjct 797 WLASDHDETRHNQQVDIVRKMLLEKGLETPDKKVQREPPWEWMGYKLHPNKWTINKIELP 856 Query 242 ELTKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEA 300 L +G T+NK+QK+VG L W I G + ++ G + L E E E++ Sbjct 857 PL-EGEWTVNKIQKVVGVLNWASQIYPGIKTKHTCAMLRGKKNLLEEIVWTEEAEAEYKN 915 Query 301 CRKKLEEM-EGNYYNKDKDVYGQLAWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP--Q 357 + ++E EG YY+ K++ + + + ++G L V + + Sbjct 916 NQGIVQETQEGTYYDPLKELIATVQKQGEGQWTYQFTQEGAVLKVGRYAKQRETHTNDLR 975 Query 358 QVIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRLELQ-LGNITWMP--KFWSCYRGHTRW 414 + QK+ +E + G++P + LP ++ W + Q ++W+P +F S W Sbjct 976 TLAHLVQKICKEALTIWGRLPRVQLPVDKKTWDMWWQDYWQVSWIPEWEFVSTPLLVKLW 1035 Query 415 RKRNIIEEVVEG-PTYYTDGG--KKNKVGSLGFIVSTGE-KFRKHEEGTNQQLELRAIEE 470 ++++E ++G YY DG K K+G G++ G+ + R+ E TNQQ EL A++ Sbjct 1036 --YSLVKEPIKGEDVYYVDGAASKVTKLGKAGYLSERGKSRIRELENTTNQQAELTAVKM 1093 Query 471 ALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGI 530 AL+ + +N+VTDS+Y L E +P+ +I++ KK ++ + WVP HKGI Sbjct 1094 ALEDSGENVNIVTDSQYVMNILTACPQES--NSPLVEQIIQALMKKRQVYLQWVPAHKGI 1151 Query 531 PQNEEIDKYISE 542 N EIDK +S+ Sbjct 1152 GGNTEIDKLVSK 1163 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (ISOLATE D205,7)] Sequence ID: P15833.3 Length: 1465 Range 1: 619 to 1184 Score:324 bits(831), Expect:3e-96, Method:Compositional matrix adjust., Identities:225/580(39%), Positives:322/580(55%), Gaps:34/580(5%) Query 3 TKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKS 62 KV+LK G GP + QWPL+ EK+ L EI +K+ +EG+L +APP NTP F IKKK Sbjct 619 VKVELKPGKDGPKIRQWPLSREKILALKEICEKMEKEGQLEEAPPTNPYNTPTFAIKKKD 678 Query 63 -GKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREY 121 KWRMLIDFRELNK T+D TE P + +K+ +T++D+GDAYF+IPL +R+Y Sbjct 679 KNKWRMLIDFRELNKVTQDFTEVNWVFPT-RQVAEKRRITVIDVGDAYFSIPLDPNFRQY 737 Query 122 TCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDI 181 T FTL S NN P KRY +KVLPQGWK S S+ Q++M+++L+ + + + ++ YMDDI Sbjct 738 TAFTLPSVNNAEPGKRYIYKVLPQGWKGSQSICQYSMRKVLDPFRKANSDVIIIQYMDDI 797 Query 182 YIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLP 241 I SD +H +V L + GF+ PEEK QK P KW+G+EL P+ WK QK LP Sbjct 798 LIASDRSDLEHDRVVSQLKELLNDMGFSTPEEKFQKDPPFKWMGYELWPKKWKLQKIQLP 857 Query 242 ELTKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEWEA 300 E K T+N +QKLVG L W + G +I KL+ G L E + E+ E + Sbjct 858 E--KEVWTVNAIQKLVGVLNWAAQLFPGIKTRHICKLIRGKMTLTEEVQWTELAEAELQE 915 Query 301 CRKKLE-EMEGNYYNK----DKDVYGQLAWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSI 355 + LE E EG+YY + + V LA Y ++Q K L V +KN Sbjct 916 NKIILEQEQEGSYYKERVPLEATVQKNLA---NQWTYKIHQ-GNKVLKVGKYAKVKNTHT 971 Query 356 P--QQVIKAAQKLTQEVIIRTGKIPWILLPGKEEDW-RLELQLGNITWMPKFWSCYRGHT 412 + + QK+ +E ++ G+IP LP + E W + +TW+P+ W Sbjct 972 NGVRLLAHVVQKIGKEALVIWGEIPVFHLPVERETWDQWWTDYWQVTWIPE-WDFVSTPP 1030 Query 413 RWR-KRNIIEEVVEG-PTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRA 467 R N++++ +EG TYYTDG + +K G G++ G +K + E+ TNQQ EL A Sbjct 1031 LIRLAYNLVKDPLEGRETYYTDGSCNRTSKEGKAGYVTDRGKDKVKVLEQTTNQQAELEA 1090 Query 468 IEEALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGH 527 AL +N++ DS+Y + E ++PI A+I+E KK+ + V WVP H Sbjct 1091 FALALTDSEPQVNIIVDSQYVMGIIAAQPTE--TESPIVAKIIEEMIKKEAVYVGWVPAH 1148 Query 528 KGIPQNEEIDKYISE-----IFLAKEGEGILPKREEDAGY 562 KG+ N+E+D +S+ +FL K I P +EE Y Sbjct 1149 KGLGGNQEVDHLVSQGIRQVLFLEK----IEPAQEEHEKY 1184 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Simian immunodeficiency virus (AGM3 ISOLATE)] Sequence ID: P27980.2 Length: 1465 Range 1: 621 to 1178 Score:317 bits(811), Expect:2e-93, Method:Compositional matrix adjust., Identities:208/563(37%), Positives:313/563(55%), Gaps:21/563(3%) Query 1 PITKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKK 60 PIT VKLKEG GP + QWPL++EK+K L EI D+L +EGK+ K NTP+FCIKK Sbjct 621 PITPVKLKEGARGPFLKQWPLSKEKIKALQEICDQLEKEGKISKIGGENAYNTPVFCIKK 680 Query 61 KS-GKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYR 119 K +WRML+DFRELNK T+D E QLG+PHP G +K +T+LDIGDAY++IPL +R Sbjct 681 KDKSQWRMLVDFRELNKATQDFFEVQLGIPHPSGFEKMTEITVLDIGDAYYSIPLDPEFR 740 Query 120 EYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMD 179 +YT FT+ S NN GP RY + LPQGWK SP+++Q T ILE+ ++ + YMD Sbjct 741 KYTAFTIPSVNNQGPGTRYQFNCLPQGWKGSPTIFQNTAASILEEIKKELKPLTIVQYMD 800 Query 180 DIYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHT 239 D+++GS + H +V+ L ++ +G P++K QK P +W+G++L P W+ Sbjct 801 DLWVGSQEDEYTHDRLVEQLRMKLSAWGLETPDKKVQKKPPYEWMGYKLWPHKWQISSIE 860 Query 240 LPELTKGTITLNKLQKLVGELVWRQSII-GKSIPNILKLMEGDRELQSERKIEEVHVKEW 298 L + K T+N +Q+LVG+L W + G N+ KL+ G + L E E+ Sbjct 861 LED--KEEWTVNDIQRLVGKLNWAAQLYPGLRTKNLCKLIRGKKNLLETVTWTEEAEAEY 918 Query 299 EACRKKLE-EMEGNYYNKDKDVYGQLAWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIPQ 357 ++ L+ E EG YY + + + + ++++G+ L V KN + Sbjct 919 AENKEILKTEQEGTYYKPGRPIRAAVQKLEGGQWSYQFKQEGQVLKVGKYTKQKNTHTNE 978 Query 358 QVIKAA--QKLTQEVIIRTGKIPWILLPGKEEDW-RLELQLGNITWMP--KFWSCYRGHT 412 + A QKL +E ++ G++P + LP + E W + ++W+P +F S Sbjct 979 FRVLAGLVQKLCKESLVIWGELPVLELPIEREVWEQWWADYWQVSWIPDWEFVSTPPLVK 1038 Query 413 RWRKRNIIEEVVEGPTYYTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIE 469 W E + + YY DG + ++ G G+I G ++ K E TNQQ EL AI+ Sbjct 1039 LWYTLT-KEPIPKEDVYYVDGACNRNSREGKAGYITQYGKQRVEKLENTTNQQAELMAIK 1097 Query 470 EALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKG 529 AL+ +N+VTDS+YA L + +P+ +I+ + +K +I + WVP KG Sbjct 1098 MALEDSGPNVNIVTDSQYAMGILTAQPTQS--DSPLIEQIIALMVQKHQIYLQWVPADKG 1155 Query 530 IPQNEEIDKYISE-----IFLAK 547 I NEEIDK +S+ +FL K Sbjct 1156 IGGNEEIDKLVSQGMRKILFLEK 1178 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Simian immunodeficiency virus (TYO-1 ISOLATE)] Sequence ID: P05895.2 Length: 1467 Range 1: 624 to 1180 Score:308 bits(789), Expect:2e-90, Method:Compositional matrix adjust., Identities:207/564(37%), Positives:305/564(54%), Gaps:24/564(4%) Query 1 PITKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKK 60 P+T VKLKEG GP V QWPL++EK++ L EI +L +EGK+ + NTPIFCIKK Sbjct 624 PVTPVKLKEGARGPCVRQWPLSKEKIEALQEICSQLEQEGKISRVGGENAYNTPIFCIKK 683 Query 61 KS-GKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYR 119 K +WRML+DFRELNK T+D E QLG+PHP GL+K + +T+LD+GDAY++IPL +R Sbjct 684 KDKSQWRMLVDFRELNKATQDFFEVQLGIPHPAGLRKMRQITVLDVGDAYYSIPLDPNFR 743 Query 120 EYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMD 179 +YT FT+ + NN GP RY + LPQGWK SP+++Q T ILE+ + P + YMD Sbjct 744 KYTAFTIPTVNNQGPGIRYQFNCLPQGWKGSPTIFQNTAASILEEIKRNLPALTIVQYMD 803 Query 180 DIYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHT 239 D+++GS H ++V+ L + +G PE+K QK P +W+G++L P W+ + Sbjct 804 DLWVGSQENEHTHDKLVEQLRTKLQAWGLETPEKKMQKEPPYEWMGYKLWPHKWELSRIQ 863 Query 240 LPELTKGTITLNKLQKLVGELVWRQSIIGKSIPNILKLMEGDR----ELQSERKIEEVHV 295 L E K T+N +QKLVG+L W + I KL+ G + EL + E Sbjct 864 LEE--KDEWTVNDIQKLVGKLNWAAQLYPGLKTRICKLITGGKKNLLELVAWTPEAEAEY 921 Query 296 KEWEACRKKLEEMEGNYYNKDKDVYGQLAWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSI 355 E K E EG YY + + + ++++G+ L V KN Sbjct 922 AENAEILKT--EQEGTYYKPGIPIRAAVQKLEGGQWSYQFKQEGQVLKVGKYTKQKNTHT 979 Query 356 PQQVIKAA--QKLTQEVIIRTGKIPWILLPGKEEDW-RLELQLGNITWMPK--FWSCYRG 410 + A QK+ +E ++ G +P + LP + E W + ++W+P+ F S Sbjct 980 NELRTLAGLVQKICKEALVIWGILPVLELPIEREVWEQWWADYWQVSWIPEWDFVSTPPL 1039 Query 411 HTRWRKRNIIEEVVEGPTYYTDGGKKN-KVGSLGFIVSTG-EKFRKHEEGTNQQLELRAI 468 W E + + YY +N K G G+I G ++ E TNQQ +L AI Sbjct 1040 LKLWYTLT-KEPIPKEDVYYVGACNRNSKEGKAGYISQYGKQRVETLENTTNQQAKLTAI 1098 Query 469 EEALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHK 528 + AL+ +N+VTDS+YA L + +P+ +I+ + +K +I + WVP HK Sbjct 1099 KMALEDSGPNVNIVTDSQYAMGILTAQPTQS--DSPLVEQIIALMIQKQQIYLQWVPAHK 1156 Query 529 GIPQNEEIDKYISE-----IFLAK 547 GI NEEIDK +S+ +FL K Sbjct 1157 GIGGNEEIDKLVSKGIRRVLFLEK 1180 >RecName: Full=Intracisternal A-particle Pol-related polyprotein; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Mouse intracisternal A-particle MIA14] Sequence ID: P11368.1 Length: 867 Range 1: 31 to 566 Score:170 bits(431), Expect:2e-44, Method:Compositional matrix adjust., Identities:150/556(27%), Positives:252/556(45%), Gaps:58/556(10%) Query 16 VPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRELN 75 VPQW L+ EKL+ + +++++ ++ G + + W NTPIF IKKKSGKWR+L D R +N Sbjct 31 VPQWHLSSEKLEAVIQLVEEQLKLGHIDPSTSPW--NTPIFVIKKKSGKWRLLHDLRPIN 88 Query 76 KQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPC 135 +Q Q GLP L + ++ I+DI D +F+IPL R FT+ S N+ P Sbjct 89 EQMNLFGPVQRGLPVLSALPRGWNLIIIDIKDCFFSIPLCPRDRPRFAFTIPSINSDEPD 148 Query 136 KRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHREI 195 RY WKVLPQG SP++ Q +QE L +Q P + +YMDDI + E+ ++ Sbjct 149 NRYQWKVLPQGMSNSPTMCQLYVQEALLPVREQFPSLILLLYMDDILLCHK-ELTMLQKA 207 Query 196 VKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPELTKGTI-TLNKLQ 254 L ++Q+G + EK Q ++LG + P QK E+ + + TLN Q Sbjct 208 YPFLLKTLSQWGLQIATEKVQISDTGQFLGSVVSPDKIVPQKV---EIRRDHLHTLNNFQ 264 Query 255 KLVGELVWRQSIIGKSIPN-----ILKLMEGDRELQSERKIEEVHVKEWEACRKKLEEME 309 KL+G++ W + + IP+ + +EGD + S R + + + K L+ + Sbjct 265 KLLGDINWLRPFL--KIPSAELRPLFWYLEGDPHISSPRTLTLAANQALQKVEKALQNAQ 322 Query 310 GNYYNKDKDVYGQLAWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSI----PQQVIKAAQK 365 +D + + + V + G LW++ N+ I P + + A K Sbjct 323 LQAI-EDSQPFSLCVFKTAQLPTAVLWQNGPLLWIH--PNVSPAKIIDWYPDAIAQLALK 379 Query 366 LTQEVIIRTGKIPWIL-----------LPGKEEDWRLELQLGNITWMPKFWSCYRGH--- 411 + I G+ P++L L DW + + ++ K + Y H Sbjct 380 GLKAAITHFGRSPYLLIVPYTAAQVQTLAATSNDWAVLV----TSFSGKIDNHYPKHPIL 435 Query 412 -------TRWRKRNIIEEVVEGPTYYTDGGKKNKVGSLGFIVSTGEKFRK-HEEGTNQQL 463 + + + + G YTDG K +G V+ G+ K + E + + + Sbjct 436 QFAQNQSVVFPQITVRNPLKNGIVVYTDGSKTG----IGAYVANGKVVSKQYNENSPRMV 491 Query 464 ELRAIEEALKQGPQTMNLVTDSRY---AFEFLLRNWDEEV---IKNPIQARIMEIAHKKD 517 E + E LK + +N+V+DS Y A L W ++ + N Q +I + + Sbjct 492 ECLVVLEVLKTFLEPLNIVSDSCYVVNAVNLLEGGWSDKPSSRVANIFQ-QIQLVLLSRS 550 Query 518 RIGVHWVPGHKGIPQN 533 + + V H G+P + Sbjct 551 PVYITHVRAHSGLPTS 566 >RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein; Contains: RecName: Full=p12; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease 17 kDa; Contains: RecName: Full=Protease 13 kDa; Contains: RecName: Full=G-patch peptide; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Jaagsiekte sheep retrovirus] Sequence ID: P31623.2 Length: 1726 Range 1: 890 to 1374 Score:171 bits(432), Expect:3e-44, Method:Compositional matrix adjust., Identities:137/501(27%), Positives:234/501(46%), Gaps:45/501(8%) Query 16 VPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRELN 75 V QWPLT+EKL +++ + + G + + W N+PIF IKKKSGKWR+L D R++N Sbjct 890 VDQWPLTQEKLSAAQQLVQEQLRLGHIEPSTSAW--NSPIFVIKKKSGKWRLLQDLRKVN 947 Query 76 KQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPC 135 + + Q GLP P + K ++ ++D+ D ++TIPL + F+L S N P Sbjct 948 ETMMHMGALQPGLPTPSAIPDKSYIIVIDLKDCFYTIPLAPQDCKRFAFSLPSVNFKEPM 1007 Query 136 KRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHREI 195 +RY W+VLPQG SP++ Q + + Q+ P++ YMDDI + E ++ Sbjct 1008 QRYQWRVLPQGMTNSPTLCQKFVATAIAPVRQRFPQLYLVHYMDDILLAHTDEHLLYQAF 1067 Query 196 VKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPELTKGTITLNKLQK 255 L +++ G + +EK Q +P +LGF L+P+ + Q L T TLN QK Sbjct 1068 -SILKQHLSLNGLVIADEKIQTHFPYNYLGFSLYPRVYNTQLVKLQ--TDHLKTLNDFQK 1124 Query 256 LVGELVWRQSII---GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACRKKLEEMEGNY 312 L+G++ W + + ++ + +++GD + S R + ++ + + + + Y Sbjct 1125 LLGDINWIRPYLKLPTYTLQPLFDILKGDSDPASPRTLSLEGRTALQSIEEAIRQQQITY 1184 Query 313 YNKDKDVYGQLAWG------DKAIEYIVYQEKGKPL-WVNVVHNIKNLSIP--QQVIKAA 363 + Q +WG +A ++YQ+ KPL W+ + +P + V K Sbjct 1185 CDY------QRSWGLYILPTPRAPTGVLYQD--KPLRWIYLSATPTKHLLPYYELVAKII 1236 Query 364 QKLTQEVIIRTG-KIPWILLPG--KEEDWRLELQ----------LGNITW---MPKFWSC 407 K E I G + P+I +P +++DW + G IT K Sbjct 1237 AKGRHEAIQYFGMEPPFICVPYALEQQDWLFQFSDNWSIAFANYPGQITHHYPSDKLLQF 1296 Query 408 YRGHTRWRKRNIIEE-VVEGPTYYTDGGKKNKVGSLGFIVSTGEKFRKHEEGTNQQLELR 466 H + + + + E +TDG G+ I++ + + + Q +EL Sbjct 1297 ASSHAFIFPKIVRRQPIPEATLIFTDGSSN---GTAALIINHQTYYAQTSFSSAQVVELF 1353 Query 467 AIEEALKQGPQTMNLVTDSRY 487 A+ +AL P + NL TDS Y Sbjct 1354 AVHQALLTVPTSFNLFTDSSY 1374 Range 2: 600 to 718 Score:65.9 bits(159), Expect:4e-11, Method:Compositional matrix adjust., Identities:39/125(31%), Positives:66/125(52%), Gaps:7/125(5%) Query 559 DAGYDLICPEEVTIEPGQ-VKCIPIELRLNLKKSQWAMIATKSSMAAKGVFTQGGIIDSG 617 AG DL + P V+ + + L ++ +SS + KG+ G+IDS Sbjct 600 SAGLDLCATSYTVLTPEMGVQTLATGVFGPLPPGTVGLLLGRSSASLKGILIHPGVIDSD 659 Query 618 YQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGSTGMY 677 Y G+I+++ NKI +VI G++ AQL+L+ L G++ +R +KGFGS+ Y Sbjct 660 YTGEIKILASAPNKI-IVINAGQRIAQLLLV-----PLVIQGKTINRDRQDKGFGSSDAY 713 Query 678 WIENI 682 W++N+ Sbjct 714 WVQNV 718 >RecName: Full=Intracisternal A-particle Pol-related polyprotein; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Golden hamster intracisternal A-particle H18] Sequence ID: P04026.1 Length: 863 Range 1: 20 to 469 Score:165 bits(417), Expect:1e-42, Method:Compositional matrix adjust., Identities:139/482(29%), Positives:219/482(45%), Gaps:42/482(8%) Query 16 VPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRELN 75 V QWPL+ EKL+ +T ++ + G L + W NTPIF IKKKSGKWR+L D R +N Sbjct 20 VSQWPLSSEKLEAVTRLVQEQERLGHLEPSTSPW--NTPIFVIKKKSGKWRLLHDLRAIN 77 Query 76 KQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPC 135 Q Q GLP L + + I+DI D +F+IPLY R FT+ S N++ P Sbjct 78 NQMHLFGPVQRGLPLLSALPQDWKLIIIDIKDCFFSIPLYPRDRPRFAFTIPSLNHMEPD 137 Query 136 KRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHREI 195 KR+ WKVLPQG SP++ Q +QE LE +Q + YMDDI I E+ ++ Sbjct 138 KRFQWKVLPQGMANSPTICQLYVQEALEPIRKQFTSLIVIHYMDDILICHK-ELDVLQKA 196 Query 196 VKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPELTKGTI-TLNKLQ 254 L + Q+G + EK Q +LG ++ P+ QK E+ K + TLN Q Sbjct 197 FPMLVAELKQWGLEIASEKVQIADTGLFLGSKITPKNIVPQKI---EIRKDHLQTLNDFQ 253 Query 255 KLVGELVWRQSII---GKSIPNILKLMEGDRELQSERKIEEVHVKEWEACRKKLEEMEGN 311 KL+G++ W + + + + L+EG+ + S RK + + + L+E + Sbjct 254 KLLGDINWLRPFLKIPSADLKPLFDLLEGEPHISSPRKFTPAAHRALQMVEEALQEAQIT 313 Query 312 YYNKDKDVYGQLAWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIPQQVIKAAQKLTQEVI 371 + K + W A+ + + K + + +L +P AAQ T Sbjct 314 TNSPAKII----DWYPDAVAQ--PRSRIKAAVTHFGRDPDSLIVP---YTAAQVQT---- 360 Query 372 IRTGKIPWILLPGKEEDWRLEL-----QLGN-ITWMPKFWSCYRGHTRWRKRNIIEEVVE 425 L DW + + Q+ N P + + + + + Sbjct 361 ----------LAATSSDWAVLVTSFSGQIDNHFPKHPILQFALNQAIVFPQVTAKDPLPD 410 Query 426 GPTYYTDGGKKNKVGSLGFIVSTGEKFRKHEEGTNQQLELRAIEEALKQGPQTMNLVTDS 485 G YTDG +K G ++V +++ E + Q +E + E L+ P +N+V+DS Sbjct 411 GTVVYTDG---SKTGLGAYVVKDRVISKQYNETSPQVVECLIVLEVLEAFPGPLNIVSDS 467 Query 486 RY 487 Y Sbjct 468 SY 469 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p19; Contains: RecName: Full=p2A; Contains: RecName: Full=p2B; Contains: RecName: Full=p10; Contains: RecName: Full=Capsid protein p27, alternate cleaved 1; Contains: RecName: Full=Capsid protein p27, alternate cleaved 2; Contains: RecName: Full=Spacer peptide; Short=SP; AltName: Full=p3; Contains: RecName: Full=Nucleocapsid protein p12; AltName: Full=NCp12; Contains: RecName: Full=Protease p15; Contains: RecName: Full=Reverse transcriptase beta-subunit; Short=RT-beta; Contains: RecName: Full=Reverse transcriptase alpha-subunit; Short=RT-alpha; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=pp32; Contains: RecName: Full=p4 [Rous sarcoma virus - Schmidt-Ruppin B] Sequence ID: O92956.2 Length: 1603 Range 1: 729 to 1261 Score:159 bits(403), Expect:1e-40, Method:Compositional matrix adjust., Identities:161/553(29%), Positives:250/553(45%), Gaps:57/553(10%) Query 16 VPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTC-NTPIFCIKKKSGKWRMLIDFREL 74 + QWPL E KL LT++++K E +LG P +C NTP+F I+K SG +R+L D R + Sbjct 729 IDQWPLPEGKLVALTQLVEK---ELQLGHIEPSLSCWNTPVFVIRKASGSYRLLHDLRAV 785 Query 75 NKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGP 134 N + Q G P L + + +LD+ D +F+IPL E RE FTL S NN P Sbjct 786 NAKLVPFGAVQQGAPVLSALPRGWPLMVLDLKDCFFSIPLAEQDREAFAFTLPSVNNQAP 845 Query 135 CKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHRE 194 +R+ WKVLPQG SP++ Q + ++LE +HP ++ YMDD+ + + Sbjct 846 ARRFQWKVLPQGMTCSPTICQLVVGQVLEPLRLKHPSLRMLHYMDDLLLAASSH-DGLEA 904 Query 195 IVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPELTKGTITLNKLQ 254 +++ N + + GFT+ +K Q+ ++LG++L T+ + E TL +Q Sbjct 905 AGEEVINTLERAGFTISPDKIQREPGVQYLGYKLG-STYVAPVGLVAE--PRIATLWDVQ 961 Query 255 KLVGELVWRQSIIGKSIPNIL------KLMEGD----RELQSERKI---EEVHVKEWEAC 301 KLVG L W + +G IP L +L D RE + K+ E V + A Sbjct 962 KLVGSLQWLRPALG--IPPRLMGPFYEQLRGSDPNEAREWNLDMKMAWREIVQLSTTAAL 1019 Query 302 RK--KLEEMEGNYYNKDKDVYGQLAWGDKAIEYIVYQEKGKP-LWVNVVHNIKNLSIPQQ 358 + +EG ++ G L G +P LW+ K + + Sbjct 1020 ERWDPALPLEGAVVRCEQGAIGVLGQG--------LSTHPRPCLWLFSTQPTKAFTAWLE 1071 Query 359 VIKAAQKLTQEVIIRT-GK-IPWILLPGK-EEDWRLE----LQL----GNI--TWMPKFW 405 V+ + +RT GK + +LLP ED L L L G I + P + Sbjct 1072 VLTLLITKLRASAVRTFGKEVDILLLPACFREDLPLPEGILLALRGFAGKIRSSDTPSIF 1131 Query 406 SCYRGHTRWRKRNIIEEVVEGPTYYTDGGKKNKVGSLGFIVSTGEKFRKHE----EGTNQ 461 R K + + V GPT +TD G + + G ++ E + Q Sbjct 1132 DIARPLHVSLKVRVTDHPVPGPTVFTDASSSTHKGVV--VWREGPRWEIKEIADLGASVQ 1189 Query 462 QLELRAIEEALKQGPQT-MNLVTDSRYAFEFLLRNWDEEVIKNPIQARIME--IAHKKDR 518 QLE RA+ AL P T N+VTDS + + LL+ +E + + A I+E ++ + Sbjct 1190 QLEARAVAMALLLWPTTPTNVVTDSAFVAKMLLK-MGQEGVPSTAAAFILEDALSQRSAM 1248 Query 519 IGVHWVPGHKGIP 531 V V H +P Sbjct 1249 AAVLHVRSHSEVP 1261 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p19; Contains: RecName: Full=p2A; Contains: RecName: Full=p2B; Contains: RecName: Full=p10; Contains: RecName: Full=Capsid protein p27, alternate cleaved 1; Contains: RecName: Full=Capsid protein p27, alternate cleaved 2; Contains: RecName: Full=Spacer peptide; Short=SP; AltName: Full=p3; Contains: RecName: Full=Nucleocapsid protein p12; AltName: Full=NCp12; Contains: RecName: Full=Protease p15; Contains: RecName: Full=Reverse transcriptase beta-subunit; Short=RT-beta; Contains: RecName: Full=Reverse transcriptase alpha-subunit; Short=RT-alpha; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=pp32; Contains: RecName: Full=p4 [Avian leukosis virus] Sequence ID: Q7SQ98.2 Length: 1603 Range 1: 731 to 1261 Score:157 bits(398), Expect:7e-40, Method:Compositional matrix adjust., Identities:160/551(29%), Positives:249/551(45%), Gaps:57/551(10%) Query 18 QWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTC-NTPIFCIKKKSGKWRMLIDFRELNK 76 QWPL E KL LT++++K E +LG P +C NTP+F I+K SG +R+L D R +N Sbjct 731 QWPLPEGKLVALTQLVEK---ELQLGHIEPSLSCWNTPVFVIRKASGSYRLLHDLRAVNA 787 Query 77 QTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPCK 136 + Q G P L + + +LD+ D +F+IPL E RE FTL S NN P + Sbjct 788 KLVPFGAVQQGAPVLSALPRGWPLMVLDLKDCFFSIPLAEQDREAFAFTLPSVNNQAPAR 847 Query 137 RYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHREIV 196 R+ WKVLPQG SP++ Q + ++LE +HP ++ YMDD+ + + Sbjct 848 RFQWKVLPQGMTCSPTICQLVVGQVLEPLRLKHPSLRMLHYMDDLLLAASSH-DGLEAAG 906 Query 197 KDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPELTKGTITLNKLQKL 256 +++ + + + GFT+ +K Q+ ++LG++L T+ + E TL +QKL Sbjct 907 EEVISTLERAGFTISPDKIQREPGVQYLGYKLG-STYVAPVGLVAE--PRIATLWDVQKL 963 Query 257 VGELVWRQSIIGKSIPNIL------KLMEGD----RELQSERKI---EEVHVKEWEACRK 303 VG L W + +G IP L +L D RE + K+ E V + A + Sbjct 964 VGSLQWLRPALG--IPPRLMGPFYEQLRGSDPNEAREWNLDMKMAWREIVQLSTTAALER 1021 Query 304 --KLEEMEGNYYNKDKDVYGQLAWGDKAIEYIVYQEKGKP-LWVNVVHNIKNLSIPQQVI 360 +EG ++ G L G +P LW+ K + +V+ Sbjct 1022 WDPALPLEGAVARCEQGAIGVLGQG--------LSTHPRPCLWLFSTQPTKAFTAWLEVL 1073 Query 361 KAAQKLTQEVIIRT-GK-IPWILLPGK-EEDWRLE----LQL----GNI--TWMPKFWSC 407 + +RT GK + +LLP ED L L L G I + P + Sbjct 1074 TLLITKLRASAVRTFGKEVDILLLPACFREDLPLPEGILLALKGFAGKIRSSDTPSIFDI 1133 Query 408 YRGHTRWRKRNIIEEVVEGPTYYTDGGKKNKVGSLGFIVSTGEKFRKHE----EGTNQQL 463 R K + + V GPT +TD G + + G ++ E + QQL Sbjct 1134 ARPLHVSLKVRVTDHPVPGPTVFTDASSSTHKGVV--VWREGPRWEIKEIADSGASVQQL 1191 Query 464 ELRAIEEALKQGPQT-MNLVTDSRYAFEFLLRNWDEEVIKNPIQARIME--IAHKKDRIG 520 E RA+ AL P T N+VTDS + + LL+ +E + + A I+E ++ + Sbjct 1192 EARAVAMALLLWPTTPTNVVTDSAFVAKMLLK-MGQEGVPSTAAAFILEDALSQRSAMAA 1250 Query 521 VHWVPGHKGIP 531 V V H +P Sbjct 1251 VLHVRSHSEVP 1261 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p19; Contains: RecName: Full=p2A; Contains: RecName: Full=p2B; Contains: RecName: Full=p10; Contains: RecName: Full=Capsid protein p27, alternate cleaved 1; Contains: RecName: Full=Capsid protein p27, alternate cleaved 2; Contains: RecName: Full=Spacer peptide; Short=SP; AltName: Full=p3; Contains: RecName: Full=Nucleocapsid protein p12; AltName: Full=NCp12; Contains: RecName: Full=Protease p15; Contains: RecName: Full=Reverse transcriptase beta-subunit; Short=RT-beta; Contains: RecName: Full=Reverse transcriptase alpha-subunit; Short=RT-alpha; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=pp32; Contains: RecName: Full=p4 [Avian leukosis virus - RSA] Sequence ID: Q04095.2 Length: 1603 Range 1: 729 to 1261 Score:157 bits(397), Expect:7e-40, Method:Compositional matrix adjust., Identities:160/553(29%), Positives:250/553(45%), Gaps:57/553(10%) Query 16 VPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTC-NTPIFCIKKKSGKWRMLIDFREL 74 + QWPL E KL LT++++K E +LG P +C NTP+F I+K SG +R+L D R + Sbjct 729 IDQWPLPEGKLVALTQLVEK---ELQLGHIEPSLSCWNTPVFVIRKASGSYRLLHDLRAV 785 Query 75 NKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGP 134 N + Q G P L + + +LD+ D +F+IPL E RE FTL S NN P Sbjct 786 NAKLVPFGAVQQGAPVLSALPRGWPLMVLDLKDCFFSIPLAEQDREAFAFTLPSVNNQAP 845 Query 135 CKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHRE 194 +R+ WKVLPQG SP++ Q + ++LE +HP ++ YMDD+ + + Sbjct 846 ARRFQWKVLPQGMTCSPTICQLVVGQVLEPLRLKHPSLRMLHYMDDLLLAASSH-DGLEA 904 Query 195 IVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPELTKGTITLNKLQ 254 +++ + + + GFT+ +K Q+ ++LG++L T+ + E TL +Q Sbjct 905 AGEEVISTLERAGFTISPDKIQREPGVQYLGYKLG-STYVAPVGLVAE--PRIATLWDVQ 961 Query 255 KLVGELVWRQSIIGKSIPNIL------KLMEGD----RELQSERKI---EEVHVKEWEAC 301 KLVG L W + +G IP L +L D RE + K+ E V + A Sbjct 962 KLVGSLQWLRPALG--IPPRLMGPFYEQLRGSDPNEAREWNLDMKMAWREIVQLSTTAAL 1019 Query 302 RK--KLEEMEGNYYNKDKDVYGQLAWGDKAIEYIVYQEKGKP-LWVNVVHNIKNLSIPQQ 358 + +EG ++ G L G +P LW+ K + + Sbjct 1020 ERWDPALPLEGAVARCEQGAIGVLGQG--------LSTHPRPCLWLFSTQPTKAFTAWLE 1071 Query 359 VIKAAQKLTQEVIIRT-GK-IPWILLPGK-EEDWRLE----LQL----GNI--TWMPKFW 405 V+ + +RT GK + +LLP ED L L L G I + P + Sbjct 1072 VLTLLITKLRASAVRTFGKEVDILLLPACFREDLPLPEGILLALRGFAGKIRSSDTPSIF 1131 Query 406 SCYRGHTRWRKRNIIEEVVEGPTYYTDGGKKNKVGSLGFIVSTGEKFRKHE----EGTNQ 461 R K + + V GPT +TD G + + G ++ E + Q Sbjct 1132 DIARPLHVSLKVRVTDHPVPGPTAFTDASSSTHKGVV--VWREGPRWEIKEIADLGASVQ 1189 Query 462 QLELRAIEEALKQGPQT-MNLVTDSRYAFEFLLRNWDEEVIKNPIQARIME--IAHKKDR 518 QLE RA+ AL P T N+VTDS + + LL+ +E + + A I+E ++ + Sbjct 1190 QLEARAVAMALLLWPTTPTNVVTDSAFVAKMLLK-MGQEGVPSTAAAFILEDALSQRSAM 1248 Query 519 IGVHWVPGHKGIP 531 V V H +P Sbjct 1249 AAVLHVRSHSEVP 1261 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p19; Contains: RecName: Full=p2A; Contains: RecName: Full=p2B; Contains: RecName: Full=p10; Contains: RecName: Full=Capsid protein p27, alternate cleaved 1; Contains: RecName: Full=Capsid protein p27, alternate cleaved 2; Contains: RecName: Full=Spacer peptide; Short=SP; AltName: Full=p3; Contains: RecName: Full=Nucleocapsid protein p12; AltName: Full=NCp12; Contains: RecName: Full=Protease p15; Contains: RecName: Full=Reverse transcriptase beta-subunit; Short=RT-beta; Contains: RecName: Full=Reverse transcriptase alpha-subunit; Short=RT-alpha; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=pp32; Contains: RecName: Full=p4 [Rous sarcoma virus - Prague C] Sequence ID: P03354.2 Length: 1603 Range 1: 731 to 1261 Score:156 bits(395), Expect:1e-39, Method:Compositional matrix adjust., Identities:160/551(29%), Positives:248/551(45%), Gaps:57/551(10%) Query 18 QWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTC-NTPIFCIKKKSGKWRMLIDFRELNK 76 QWPL E KL LT++++K E +LG P +C NTP+F I+K SG +R+L D R +N Sbjct 731 QWPLPEGKLVALTQLVEK---ELQLGHIEPSLSCWNTPVFVIRKASGSYRLLHDLRAVNA 787 Query 77 QTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPCK 136 + Q G P L + + +LD+ D +F+IPL E RE FTL S NN P + Sbjct 788 KLVPFGAVQQGAPVLSALPRGWPLMVLDLKDCFFSIPLAEQDREAFAFTLPSVNNQAPAR 847 Query 137 RYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHREIV 196 R+ WKVLPQG SP++ Q + ++LE +HP + YMDD+ + + Sbjct 848 RFQWKVLPQGMTCSPTICQLVVGQVLEPLRLKHPSLCMLHYMDDLLLAASSH-DGLEAAG 906 Query 197 KDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPELTKGTITLNKLQKL 256 +++ + + + GFT+ +K Q+ ++LG++L T+ + E TL +QKL Sbjct 907 EEVISTLERAGFTISPDKVQREPGVQYLGYKLG-STYVAPVGLVAE--PRIATLWDVQKL 963 Query 257 VGELVWRQSIIGKSIPNIL------KLMEGD----RELQSERKI---EEVHVKEWEACRK 303 VG L W + +G IP L +L D RE + K+ E V + A + Sbjct 964 VGSLQWLRPALG--IPPRLMGPFYEQLRGSDPNEAREWNLDMKMAWREIVRLSTTAALER 1021 Query 304 --KLEEMEGNYYNKDKDVYGQLAWGDKAIEYIVYQEKGKP-LWVNVVHNIKNLSIPQQVI 360 +EG ++ G L G +P LW+ K + +V+ Sbjct 1022 WDPALPLEGAVARCEQGAIGVLGQG--------LSTHPRPCLWLFSTQPTKAFTAWLEVL 1073 Query 361 KAAQKLTQEVIIRT-GK-IPWILLPGK-EEDWRLE----LQL----GNI--TWMPKFWSC 407 + +RT GK + +LLP ED L L L G I + P + Sbjct 1074 TLLITKLRASAVRTFGKEVDILLLPACFREDLPLPEGILLALKGFAGKIRSSDTPSIFDI 1133 Query 408 YRGHTRWRKRNIIEEVVEGPTYYTDGGKKNKVGSLGFIVSTGEKFRKHE----EGTNQQL 463 R K + + V GPT +TD G + + G ++ E + QQL Sbjct 1134 ARPLHVSLKVRVTDHPVPGPTVFTDASSSTHKGVV--VWREGPRWEIKEIADLGASVQQL 1191 Query 464 ELRAIEEALKQGPQT-MNLVTDSRYAFEFLLRNWDEEVIKNPIQARIME--IAHKKDRIG 520 E RA+ AL P T N+VTDS + + LL+ +E + + A I+E ++ + Sbjct 1192 EARAVAMALLLWPTTPTNVVTDSAFVAKMLLK-MGQEGVPSTAAAFILEDALSQRSAMAA 1250 Query 521 VHWVPGHKGIP 531 V V H +P Sbjct 1251 VLHVRSHSEVP 1261 >RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp21; Contains: RecName: Full=Protein p3; Contains: RecName: Full=Protein p8; Contains: RecName: Full=Protein n; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Mouse mammary tumor virus (STRAIN BR6)] Sequence ID: P03365.3 Length: 1755 Range 1: 886 to 1418 Score:155 bits(392), Expect:4e-39, Method:Compositional matrix adjust., Identities:141/553(25%), Positives:244/553(44%), Gaps:59/553(10%) Query 18 QWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRELNKQ 77 QWPL +EKL+ L +++ + ++ G L ++ W NTP+F IKKKSGKWR+L D R +N Sbjct 886 QWPLKQEKLQALQQLVTEQLQLGHLEESNSPW--NTPVFVIKKKSGKWRLLQDLRAVNAT 943 Query 78 TEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPCKR 137 D+ Q GLP P + K + I+D+ D +F I L+ + F++ SPN P +R Sbjct 944 MHDMGALQPGLPSPVAVPKGWEIIIIDLQDCFFNIKLHPEDCKRFAFSVPSPNFKRPYQR 1003 Query 138 YYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHREIVK 197 + WKVLPQG K SP++ Q + + + ++ + YMDDI + EI+ Sbjct 1004 FQWKVLPQGMKNSPTLCQKFVDKAILTVRDKYQDSYIVHYMDDILLAHPSR-SIVDEILT 1062 Query 198 DLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPELTKGTITLNKLQKLV 257 + + ++G + EK QK K+LG + + +QK L T TLN QKL+ Sbjct 1063 SMIQALNKHGLVVSTEKIQKYDNLKYLGTHIQGDSVSYQK--LQIRTDKLRTLNDFQKLL 1120 Query 258 GELVWRQSIIGKS---IPNILKLMEGDRELQSERKIEEVHVKEWEACRKKLEEMEGNYYN 314 G + W + + + + + +++ GD S RK+ K + ++L + Sbjct 1121 GNINWIRPFLKLTTGELKPLFEILNGDSNPISTRKLTPEACKALQLMNERLSTARVKRLD 1180 Query 315 KD--------KDVYGQLA--WGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP------QQ 358 K Y A W D +E W+++ H + P Q Sbjct 1181 LSQPWSLCILKTEYTPTACLWQDGVVE-----------WIHLPHISPKVITPYDIFCTQL 1229 Query 359 VIKAAQKLTQ-------EVIIRTGKIPWILLPGKEEDWRLELQ--LGNITWM----PKFW 405 +IK + + +++ K+ + LL ++EDW + L LG + + P Sbjct 1230 IIKGRHRSKELFSKDPDYIVVPYTKVQFDLLLQEKEDWPISLLGFLGEVHFHLPKDPLLT 1289 Query 406 SCYRGHTRWRKRNIIEEVVEGPTYYTDGGKKNKVGSLGFIVSTGEKFRKHEEGTNQQLEL 465 + + + +G +TDG + S+ +I +++ + T QQ E+ Sbjct 1290 FTLQTAIIFPHMTSTTPLEKGIVIFTDGSANGR--SVTYIQGREPIIKENTQNTAQQAEI 1347 Query 466 RAIEEALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAH-------KKDR 518 A+ A ++ Q NL TDS+Y E +P E+ H ++++ Sbjct 1348 VAVITAFEEVSQPFNLYTDSKYVTGLFPEI--ETATLSPRTKIYTELKHLQRLIHKRQEK 1405 Query 519 IGVHWVPGHKGIP 531 + + GH G+P Sbjct 1406 FYIGHIRGHTGLP 1418 Range 2: 631 to 750 Score:53.5 bits(127), Expect:2e-07, Method:Compositional matrix adjust., Identities:43/126(34%), Positives:70/126(55%), Gaps:9/126(7%) Query 560 AGYDLICPEEV--TIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAKGVFTQGGIIDSG 617 AG DL +++ ++E G V +P ++ L + +I +SS KG+ G+IDS Sbjct 631 AGLDLSSQKDLILSLEDG-VSLVPTLVKGTLPEGTTGLIIGRSSNYKKGLEVLPGVIDSD 689 Query 618 YQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGSTG-M 676 +QG+I+V M + K AV+I +G + AQL+L+ K ERG +GFGST + Sbjct 690 FQGEIKV-MVKAAKNAVIIHKGERIAQLLLLPYLKLPN----PVIKEERGSEGFGSTSHV 744 Query 677 YWIENI 682 +W++ I Sbjct 745 HWVQEI 750 >RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp21; Contains: RecName: Full=Protein p3; Contains: RecName: Full=Protein p8; Contains: RecName: Full=Protein n; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Mouse mammary tumor virus (STRAIN C3H)] Sequence ID: P11283.2 Length: 1755 Range 1: 886 to 1418 Score:153 bits(387), Expect:2e-38, Method:Compositional matrix adjust., Identities:137/543(25%), Positives:244/543(44%), Gaps:39/543(7%) Query 18 QWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRELNKQ 77 QWPL +EKL+ L +++ + ++ G L ++ W NTP+F IKKKSGKWR+L D R +N Sbjct 886 QWPLKQEKLQALQQLVTEQLQLGHLEESNSPW--NTPVFVIKKKSGKWRLLQDLRAVNAT 943 Query 78 TEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPCKR 137 D+ Q GLP P + K + I+D+ D +F I L+ + F++ SPN P +R Sbjct 944 MHDMGALQPGLPSPVAVPKGWEIIIIDLQDCFFNIKLHPEDCKRFAFSVPSPNFKRPYQR 1003 Query 138 YYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHREIVK 197 + WKVLPQG K SP++ Q + + + ++ + YMDDI + EI+ Sbjct 1004 FQWKVLPQGMKNSPTLCQKFVDKAILTVRDKYQDSYIVHYMDDILLAHPSR-SIVDEILT 1062 Query 198 DLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPELTKGTITLNKLQKLV 257 + + ++G + EK QK K+LG + +QK L T TLN QKL+ Sbjct 1063 SMIQALNKHGLVVSTEKIQKYDNLKYLGTHIQGDAVSYQK--LQIRTDKLRTLNDFQKLL 1120 Query 258 GELVWRQSIIGKS---IPNILKLMEGDRELQSERKIEEVHVKEWEACRKKLEEMEGNYYN 314 G + W + + + + + +++ GD S RK+ K + ++L + Sbjct 1121 GNINWIRPFLKLTTGELKPLFEILNGDSNPISIRKLTPEACKALQLVNERLSIARVKRLD 1180 Query 315 KDKDVYGQLAWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSIP------QQVIKAAQKLTQ 368 + + + ++Q G W+++ H + P Q +IK + + Sbjct 1181 LSRPWSLCILKTEYTPTACLWQ-NGVLEWIHLPHISPKVITPYDIFCTQLIIKGRHRSKE 1239 Query 369 -------EVIIRTGKIPWILLPGKEEDWRLELQ--LGNITWM----PKFWSCYRGHTRWR 415 +++ K+ + LL ++EDW + L LG + + P + + Sbjct 1240 LFSKDPDYIVVPYTKVQFDLLLQEKEDWPISLLGFLGEVHFHLPKDPLLTFTLQTAIIFP 1299 Query 416 KRNIIEEVVEGPTYYTDGGKKNKVGSLGFIVSTGEKFRKHEEGTNQQLELRAIEEALKQG 475 + +G +TDG + S+ +I +++ + T QQ E+ A+ A ++ Sbjct 1300 HMTSTTPLEKGIVIFTDGSANGR--SVTYIQGREPIIKENTQNTAQQAEIVAVITAFEEV 1357 Query 476 PQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAH-------KKDRIGVHWVPGHK 528 Q+ NL TDS+Y E +P E+ H ++++ + + GH Sbjct 1358 SQSFNLYTDSKYVTGLFPEI--ETATLSPRTKIYTELRHLQRLIHKRQEKFYIGHIRGHT 1415 Query 529 GIP 531 G+P Sbjct 1416 GLP 1418 Range 2: 631 to 750 Score:53.5 bits(127), Expect:3e-07, Method:Compositional matrix adjust., Identities:43/126(34%), Positives:70/126(55%), Gaps:9/126(7%) Query 560 AGYDLICPEEV--TIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAKGVFTQGGIIDSG 617 AG DL +++ ++E G V +P ++ L + +I +SS KG+ G+IDS Sbjct 631 AGLDLSSQKDLILSLEDG-VSLVPTLVKGTLPEGTTGLIIGRSSNYKKGLEVLPGVIDSD 689 Query 618 YQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGSTG-M 676 +QG+I+V M + K AV+I +G + AQL+L+ K ERG +GFGST + Sbjct 690 FQGEIKV-MVKAAKNAVIIHKGERIAQLLLLPYLKLPN----PIIKEERGSEGFGSTSHV 744 Query 677 YWIENI 682 +W++ I Sbjct 745 HWVQEI 750 >RecName: Full=Gag-Pro-Pol polyprotein; AltName: Full=Pr160Gag-Pro-Pol; Contains: RecName: Full=Matrix protein p19; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p15-pro; Short=NC'; Short=NC-pro; Contains: RecName: Full=Protease; Short=PR; Contains: RecName: Full=p1; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [HTLV-3 strain 2026ND] Sequence ID: Q0R5R2.3 Length: 1440 Range 1: 570 to 912 Score:147 bits(371), Expect:1e-36, Method:Compositional matrix adjust., Identities:104/348(30%), Positives:165/348(47%), Gaps:13/348(3%) Query 14 PHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRE 73 P V Q+PL E+L+ LT+++ + +E + P N PIF +KK +GKWR + D R Sbjct 570 PEVSQFPLNPERLQALTDLVSRALEAKHI--EPYQGPGNNPIFPVKKPNGKWRFIHDLRA 627 Query 74 LNKQTEDLTEAQLGLPHPGGL-QKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNL 132 N T DL G P L Q H+ +D+ DA+F IPL ++ Y FTL PNN Sbjct 628 TNSVTRDLASPSPGPPDLTSLPQGLPHLRTIDLTDAFFQIPLPTIFQPYFAFTLPQPNNY 687 Query 133 GPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKH 192 GP RY W+VLPQG+K SP++++ + IL + P YMDDI + S + Sbjct 688 GPGTRYSWRVLPQGFKNSPTLFEQQLSHILTPVRKTFPNSLIIQYMDDILLASPAP-GEL 746 Query 193 REIVKDLANYIAQYGFTLPEEKRQKGY-PAKWLGFELHPQTWKFQKHTLPEL-TKGTITL 250 + + N + + G L EK Q P +LG + ++ TLP + K T +L Sbjct 747 AALTDKVTNALTKEGLPLSPEKTQATPGPIHFLGQVISQDCITYE--TLPSINVKSTWSL 804 Query 251 NKLQKLVGELVWRQ---SIIGKSIPNILKLMEGDRELQSERKIEEVHVKEWEACRKKLEE 307 +LQ ++GEL W ++ S+ + + G R+ + K+ + V+ +K L Sbjct 805 AELQSMLGELQWVSKGTPVLRSSLHQLYLALRGHRDPRDTIKLTSIQVQALRTIQKALTL 864 Query 308 MEGNYYNKDKDVYGQLAWGDKAIEYIVYQEKGK-PL-WVNVVHNIKNL 353 + + + +++Q K K PL W++ H +L Sbjct 865 NCRSRLVNQLPILALIMLRPTGTTAVLFQTKQKWPLVWLHTPHPATSL 912 >RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName: Full=Matrix protein p19; Contains: RecName: Full=Core protein p16; Contains: RecName: Full=Capsid protein p35; AltName: Full=Capsid protein p34; Contains: RecName: Full=Probable nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease 17 kDa; Contains: RecName: Full=Protease 13 kDa; Contains: RecName: Full=G-patch peptide; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Squirrel monkey retrovirus] Sequence ID: P03364.3 Length: 1880 Range 1: 1023 to 1295 Score:145 bits(367), Expect:5e-36, Method:Compositional matrix adjust., Identities:94/278(34%), Positives:134/278(48%), Gaps:8/278(2%) Query 16 VPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRELN 75 V QWPLT EK ++ + + G + W NTPIF IKKKSG WR+L D R +N Sbjct 1023 VDQWPLTYEKTLAAIALVQEQLAAGHIEPTNSPW--NTPIFIIKKKSGSWRLLQDLRAVN 1080 Query 76 KQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPC 135 K + Q GLP P + H ++D+ D +FTIPL+ R Y F++ N P Sbjct 1081 KVMVPMGALQPGLPSPVAIPLNYHKIVIDLKDCFFTIPLHPEDRPYFAFSVPQINFQSPM 1140 Query 136 KRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHREI 195 RY WKVLPQG SP++ Q + + Q PE YMDDI + D + + Sbjct 1141 PRYQWKVLPQGMANSPTLCQKFVAAAIAPVRSQWPEAYILHYMDDILLACD-SAEAAKAC 1199 Query 196 VKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPELTKGTITLNKLQK 255 + + + YG + +K Q P +LGFELH Q + L T TLN QK Sbjct 1200 YAHIISCLTSYGLKIAPDKVQVSEPFSYLGFELHHQQVFTPRVCL--KTDHLKTLNDFQK 1257 Query 256 LVGELVWRQSIIGKSIPNILKL---MEGDRELQSERKI 290 L+G++ W + + ++ L ++GD S R + Sbjct 1258 LLGDIQWLRPYLKLPTSALVPLNNILKGDPNPLSVRAL 1295 >RecName: Full=Gag-Pro-Pol polyprotein; AltName: Full=Pr160Gag-Pro-Pol; Contains: RecName: Full=Matrix protein p19; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p15-pro; Short=NC'; Short=NC-pro; Contains: RecName: Full=Protease; Short=PR; Contains: RecName: Full=p1; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Human T-cell leukemia virus 3 (strain Pyl43)] Sequence ID: Q4U0X6.4 Length: 1440 Range 1: 570 to 912 Score:145 bits(366), Expect:5e-36, Method:Compositional matrix adjust., Identities:102/349(29%), Positives:168/349(48%), Gaps:15/349(4%) Query 14 PHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRE 73 P V Q+PL E+L+ LT+++ + +E + P N PIF +KK +GKWR + D R Sbjct 570 PEVSQFPLNPERLQALTDLVSRALEAKHI--EPYQGPGNNPIFPVKKPNGKWRFIHDLRA 627 Query 74 LNKQTEDLTEAQLGLPHPGGL-QKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNL 132 N T DL G P L Q H+ +D+ DA+F IPL ++ Y FTL PNN Sbjct 628 TNSLTRDLASPSPGPPDLTSLPQDLPHLRTIDLTDAFFQIPLPAVFQPYFAFTLPQPNNH 687 Query 133 GPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKH 192 GP RY W+VLPQG+K SP++++ + IL + P YMDDI + S +++ Sbjct 688 GPGTRYSWRVLPQGFKNSPTLFEQQLSHILAPVRKAFPNSLIIQYMDDILLASP-ALREL 746 Query 193 REIVKDLANYIAQYGFTLPEEKRQKGYPAK--WLGFELHPQTWKFQKHTLPELTKGTI-T 249 + + N + + G + EK Q P +LG + P ++ TLP + +I + Sbjct 747 TALTDKVTNALTKEGLPMSLEKTQ-ATPGSIHFLGQVISPDCITYE--TLPSIHVKSIWS 803 Query 250 LNKLQKLVGELVWRQ---SIIGKSIPNILKLMEGDRELQSERKIEEVHVKEWEACRKKLE 306 L +LQ ++GEL W ++ S+ + + G R+ + ++ V+ + +K L Sbjct 804 LAELQSMLGELQWVSKGTPVLRSSLHQLYLALRGHRDPRDTIELTSTQVQALKTIQKALA 863 Query 307 EMEGNYYNKDKDVYGQLAWGDKAIEYIVYQEKGK-PL-WVNVVHNIKNL 353 + + + +++Q K K PL W++ H +L Sbjct 864 LNCRSRLVSQLPILALIILRPTGTTAVLFQTKQKWPLVWLHTPHPATSL 912 >RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp24; Contains: RecName: Full=Phosphorylated protein pp18; Contains: RecName: Full=p12; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease 17 kDa; Contains: RecName: Full=Protease 13 kDa; Contains: RecName: Full=G-patch peptide; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Simian retrovirus 2] Sequence ID: P51517.2 Length: 1768 Range 1: 935 to 1224 Score:140 bits(353), Expect:3e-34, Method:Compositional matrix adjust., Identities:92/295(31%), Positives:146/295(49%), Gaps:8/295(2%) Query 16 VPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRELN 75 V QWPLT+EKL +++ + ++ G + ++ W NTPIF IKKKSGKWR+L D R +N Sbjct 935 VDQWPLTQEKLAAAQQLVQEQLQAGHIIESNSPW--NTPIFVIKKKSGKWRLLQDLRAVN 992 Query 76 KQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPC 135 + Q GLP P + + ++D+ D +FTIPL ++ F+L S N P Sbjct 993 ATMVLMGALQPGLPSPVAIPQGYFKIVIDLKDCFFTIPLQPVDQKRFAFSLPSTNFKQPM 1052 Query 136 KRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHREI 195 KRY WKVLPQG SP++ Q + +E + ++ YMDDI I L ++ + Sbjct 1053 KRYQWKVLPQGMANSPTLCQKYVAAAIEPVRKSWAQMYIIHYMDDILIAGKLG-EQVLQC 1111 Query 196 VKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPELTKGTITLNKLQK 255 L + G + EK Q P +LGF+++ QK + TLN QK Sbjct 1112 FAQLKQALTTTGLQIAPEKVQLQDPYTYLGFQINGPKITNQKAVIRR--DKLQTLNDFQK 1169 Query 256 LVGELVWRQSIIGKSIPN---ILKLMEGDRELQSERKIEEVHVKEWEACRKKLEE 307 L+G++ W + + + + + +++GD S R + E + + + E Sbjct 1170 LLGDINWLRPYLHLTTGDLKPLFDILKGDSNPNSPRSLSEAALASLQKVETAIAE 1224 Range 2: 643 to 761 Score:53.1 bits(126), Expect:4e-07, Method:Compositional matrix adjust., Identities:34/127(27%), Positives:61/127(48%), Gaps:12/127(9%) Query 560 AGYDLICPEEVTIEPGQ-VKCIPIELRLNLKKSQWAMIATKSSMAAKGVFTQGGIIDSGY 618 AG DL + P + + + L + + +I + S KG+ G+ID+ Y Sbjct 643 AGLDLCSTTHTVLTPEMGPQTLATGVYGPLPPNTFGLILGRGSTTVKGLQIYPGVIDNDY 702 Query 619 QGQIQVIMYNSNKIAVVIPQGRKFAQLILMD---KKHGKLEPWGESRKTERGEKGFGSTG 675 G+ +++ + I + IPQG + AQL+L+ H P+ RG+K FGS+ Sbjct 703 TGEFKIMARAISSI-ITIPQGERIAQLVLLPLLRTAHKIQHPY-------RGDKNFGSSD 754 Query 676 MYWIENI 682 ++W++ I Sbjct 755 IFWVQPI 761 >RecName: Full=Gag-Pro-Pol polyprotein; AltName: Full=Pr180; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp24; Contains: RecName: Full=Phosphorylated protein pp18; Contains: RecName: Full=p12; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease 17 kDa; Contains: RecName: Full=Protease 13 kDa; Contains: RecName: Full=G-patch peptide; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Mason-Pfizer monkey virus] Sequence ID: P07572.2 Length: 1771 Range 1: 938 to 1234 Score:135 bits(340), Expect:8e-33, Method:Compositional matrix adjust., Identities:92/302(30%), Positives:148/302(49%), Gaps:8/302(2%) Query 16 VPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRELN 75 V QWPLT +KL +++ + +E G + ++ W NTPIF IKKKSGKWR+L D R +N Sbjct 938 VDQWPLTNDKLAAAQQLVQEQLEAGHITESSSPW--NTPIFVIKKKSGKWRLLQDLRAVN 995 Query 76 KQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPC 135 + Q GLP P + + I+D+ D +F+IPL+ ++ F+L S N P Sbjct 996 ATMVLMGALQPGLPSPVAIPQGYLKIIIDLKDCFFSIPLHPSDQKRFAFSLPSTNFKEPM 1055 Query 136 KRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHREI 195 +R+ WKVLPQG SP++ Q + + ++ YMDDI I + ++ + Sbjct 1056 QRFQWKVLPQGMANSPTLCQKYVATAIHKVRHAWKQMYIIHYMDDILIAGK-DGQQVLQC 1114 Query 196 VKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPELTKGTITLNKLQK 255 L + G + EK Q P +LGFEL+ QK + + TLN QK Sbjct 1115 FDQLKQELTAAGLHIAPEKVQLQDPYTYLGFELNGPKITNQKAVIRK--DKLQTLNDFQK 1172 Query 256 LVGELVWRQSIIGKSIPNILKL---MEGDRELQSERKIEEVHVKEWEACRKKLEEMEGNY 312 L+G++ W + + + ++ L ++GD + S R + + + E + E + Sbjct 1173 LLGDINWLRPYLKLTTGDLKPLFDTLKGDSDPNSHRSLSKEALASLEKVETAIAEQFVTH 1232 Query 313 YN 314 N Sbjct 1233 IN 1234 Range 2: 646 to 777 Score:61.2 bits(147), Expect:1e-09, Method:Compositional matrix adjust., Identities:39/137(28%), Positives:68/137(49%), Gaps:6/137(4%) Query 560 AGYDLICPEEVTIEPGQ-VKCIPIELRLNLKKSQWAMIATKSSMAAKGVFTQGGIIDSGY 618 AG DL + P + + + L + + +I +SS+ KG+ G+ID+ Y Sbjct 646 AGLDLCSTSHTVLTPEMGPQALSTGIYGPLPPNTFGLILGRSSITMKGLQVYPGVIDNDY 705 Query 619 QGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGSTGMYW 678 G+I+++ N I V + QG + AQLIL+ +E + ++ RG+ FGS+ +YW Sbjct 706 TGEIKIMAKAVNNI-VTVSQGNRIAQLILLP----LIETDNKVQQPYRGQGSFGSSDIYW 760 Query 679 IENIPLAEEDHTKWHQD 695 ++ I + T W D Sbjct 761 VQPITCQKPSLTLWLDD 777 >RecName: Full=Gag-Pro-Pol polyprotein; AltName: Full=Pr160Gag-Pro-Pol; Contains: RecName: Full=Matrix protein p19; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p15-pro; Short=NC'; Short=NC-pro; Contains: RecName: Full=Protease; Short=PR; Contains: RecName: Full=p1; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Human T-lymphotropic virus 2] Sequence ID: P03363.4 Length: 1461 Range 1: 588 to 931 Score:131 bits(329), Expect:2e-31, Method:Compositional matrix adjust., Identities:98/350(28%), Positives:169/350(48%), Gaps:16/350(4%) Query 14 PHVPQWPLT-EEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFR 72 P V Q+PL E+L+ L +++ K +E G + P N P+F +KK +GKWR + D R Sbjct 588 PQVDQFPLNLPERLQALNDLVSKALEAGHI--EPYSGPGNNPVFPVKKPNGKWRFIHDLR 645 Query 73 ELNKQTEDLTEAQLGLPHPGGLQKK-KHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNN 131 N T LT G P L H+ +D+ DA+F IPL + Y+ Y FT+ P N Sbjct 646 ATNAITTTLTSPSPGPPDLTSLPTALPHLQTIDLTDAFFQIPLPKQYQPYFAFTIPQPCN 705 Query 132 LGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKK 191 GP RY W VLPQG+K SP++++ + +L + P YMDDI + S ++ Sbjct 706 YGPGTRYAWTVLPQGFKNSPTLFEQQLAAVLNPMRKMFPTSTIVQYMDDILLASPTN-EE 764 Query 192 HREIVKDLANYIAQYGFTLPEEKRQKGYPA--KWLGFELHPQTWKFQKH-TLPELTKGTI 248 +++ + + +G + +EK Q+ P ++LG + P ++ T+P K Sbjct 765 LQQLSQLTLQALTTHGLPISQEKTQQT-PGQIRFLGQVISPNHITYESTPTIP--IKSQW 821 Query 249 TLNKLQKLVGELVWRQ---SIIGKSIPNILKLMEGDRELQSERKIEEVHVKEWEACRKKL 305 TL +LQ ++GE+ W I+ K + ++ + G R+ ++ + + A ++ L Sbjct 822 TLTELQVILGEIQWVSKGTPILRKHLQSLYSALHGYRDPRACITLTPQQLHALHAIQQAL 881 Query 306 EEMEGNYYNKDKDVYGQLAWGDKAIEYIVYQEKGK-PL-WVNVVHNIKNL 353 + N + G ++ +++Q K PL W++ H +L Sbjct 882 QHNCRGRLNPALPLLGLISLSTSGTTSVIFQPKQNWPLAWLHTPHPPTSL 931 >RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp24; Contains: RecName: Full=Phosphorylated protein pp18; Contains: RecName: Full=p12; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease 17 kDa; Contains: RecName: Full=Protease 13 kDa; Contains: RecName: Full=G-patch peptide; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Simian retrovirus 1] Sequence ID: P04025.2 Length: 1772 Range 1: 939 to 1213 Score:130 bits(326), Expect:5e-31, Method:Compositional matrix adjust., Identities:89/280(32%), Positives:140/280(50%), Gaps:8/280(2%) Query 16 VPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRELN 75 V QWPLT EKL +++ + +E G + ++ W NTPIF IKKKSGKWR+L D R +N Sbjct 939 VDQWPLTSEKLAAAQQLVQEQLEAGHITESNSPW--NTPIFVIKKKSGKWRLLQDLRAVN 996 Query 76 KQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPC 135 + Q GLP P + + I+D+ D +F+IPL+ ++ F+L S N P Sbjct 997 ATMVLMGALQPGLPSPVAIPQGYLKIIIDLKDCFFSIPLHPSDQKRFAFSLPSTNFKEPM 1056 Query 136 KRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHREI 195 +R+ WKVLPQ SP++ Q + + ++ YMDDI I + ++ + Sbjct 1057 QRFQWKVLPQRMANSPTLCQKYVATAIHKVRHAWKQMYIIHYMDDILIAGK-DGQQVLQC 1115 Query 196 VKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPELTKGTITLNKLQK 255 L + G + EK Q P +LGFEL+ QK + + TLN QK Sbjct 1116 FDQLKQELTIAGLHIAPEKIQLQDPYTYLGFELNGPKITNQKAVIRK--DKLQTLNDFQK 1173 Query 256 LVGELVWRQSIIGKSIPNILKL---MEGDRELQSERKIEE 292 L+G++ W + + + ++ L ++GD S R + + Sbjct 1174 LLGDINWLRPYLKLTTADLKPLFDTLKGDSNPNSHRSLSK 1213 Range 2: 646 to 778 Score:63.5 bits(153), Expect:3e-10, Method:Compositional matrix adjust., Identities:40/138(29%), Positives:69/138(50%), Gaps:6/138(4%) Query 559 DAGYDLICPEEVTIEPGQ-VKCIPIELRLNLKKSQWAMIATKSSMAAKGVFTQGGIIDSG 617 AG DL + P + + + L + + +I +SS+ KG+ G+ID+ Sbjct 646 SAGLDLSSTSHTVLTPEMGPQALSTGIYGPLPPNTFGLILGRSSITIKGLQVYPGVIDND 705 Query 618 YQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGSTGMY 677 Y G+I+++ N I V +PQG + AQLIL+ +E + ++ RG+ FGS+ +Y Sbjct 706 YTGEIKIMAKAVNNI-VTVPQGNRIAQLILLP----LIETDNKVQQPYRGQGSFGSSDIY 760 Query 678 WIENIPLAEEDHTKWHQD 695 W++ I + T W D Sbjct 761 WVQPITCQKPSLTLWLDD 778 >RecName: Full=Gag-Pro-Pol polyprotein; AltName: Full=Pr160Gag-Pro-Pol; Contains: RecName: Full=Matrix protein p19; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p15-pro; Short=NC'; Short=NC-pro; Contains: RecName: Full=Protease; Short=PR; Contains: RecName: Full=p1; Contains: RecName: Full=Reverse transcriptase/ribonuclease H, p49 subunit; Short=p49 RT; Contains: RecName: Full=Reverse transcriptase/ribonuclease H, p62 subunit; Short=p62 RT; Contains: RecName: Full=Integrase; Short=IN [Human T-cell lymphotrophic virus type 1 (strain ATK)] Sequence ID: P03362.3 Length: 1462 Range 1: 591 to 845 Score:127 bits(319), Expect:3e-30, Method:Compositional matrix adjust., Identities:86/268(32%), Positives:136/268(50%), Gaps:20/268(7%) Query 14 PHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRE 73 P + Q+PL E+L+ L ++ K +E G + P N P+F +KK +G WR + D R Sbjct 591 PQISQFPLNPERLQALQHLVRKALEAGHI--EPYTGPGNNPVFPVKKANGTWRFIHDLRA 648 Query 74 LNKQTEDLTEAQLGLPHPGGLQKK-KHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNL 132 N T DL+ + G P L H+ +D+ DA+F IPL + ++ Y FT+ N Sbjct 649 TNSLTIDLSSSSPGPPDLSSLPTTLAHLQTIDLRDAFFQIPLPKQFQPYFAFTVPQQCNY 708 Query 133 GPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKH 192 GP RY WKVLPQG+K SP++++ + IL+ Q P+ YMDDI + S H Sbjct 709 GPGTRYAWKVLPQGFKNSPTLFEMQLAHILQPIRQAFPQCTILQYMDDILLAS----PSH 764 Query 193 REIV----KDLANYIAQYGFTLPEEKRQKGY-PAKWLGFELHPQTWKFQK-HTLPELTKG 246 +++ +A+ I+ +G + E K Q+ K+LG + P + T+P + Sbjct 765 EDLLLLSEATMASLIS-HGLPVSENKTQQTPGTIKFLGQIISPNHLTYDAVPTVP--IRS 821 Query 247 TITLNKLQKLVGELVWRQSIIGKSIPNI 274 L +LQ L+GE+ W + K P + Sbjct 822 RWALPELQALLGEIQW----VSKGTPTL 845 >RecName: Full=Gag-Pro-Pol polyprotein; AltName: Full=Pr160Gag-Pro-Pol; Contains: RecName: Full=Matrix protein p19; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p15-pro; Short=NC'; Short=NC-pro; Contains: RecName: Full=Protease; Short=PR; Contains: RecName: Full=p1; Contains: RecName: Full=Reverse transcriptase/ribonuclease H, p49 subunit; Short=p49 RT; Contains: RecName: Full=Reverse transcriptase/ribonuclease H, p62 subunit; Short=p62 RT; Contains: RecName: Full=Integrase; Short=IN [Human T-cell lymphotrophic virus type 1 (Caribbean isolate)] Sequence ID: P14078.3 Length: 1462 Range 1: 591 to 845 Score:126 bits(317), Expect:6e-30, Method:Compositional matrix adjust., Identities:83/264(31%), Positives:133/264(50%), Gaps:12/264(4%) Query 14 PHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRE 73 P + Q+PL E+L+ L ++ K +E G + P N P+F +KK +G WR + D R Sbjct 591 PEISQFPLNPERLQALQHLVRKALEAGHI--EPYTGPGNNPVFPVKKANGTWRFIHDLRA 648 Query 74 LNKQTEDLTEAQLGLPHPGGLQKK-KHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNL 132 N T DL+ + G P L H+ +D+ DA+F IPL + ++ Y FT+ N Sbjct 649 TNSLTIDLSSSSPGPPDLSSLPTTLAHLQTIDLKDAFFQIPLPKQFQPYFAFTVPQQCNY 708 Query 133 GPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKH 192 GP RY W+VLPQG+K SP++++ + IL+ Q P+ YMDDI + S Sbjct 709 GPGTRYAWRVLPQGFKNSPTLFEMQLAHILQPIRQAFPQCTILQYMDDILLASPSHADLQ 768 Query 193 REIVKDLANYIAQYGFTLPEEKRQKGY-PAKWLGFELHPQTWKFQKHTLPEL-TKGTITL 250 +A+ I+ +G + E K Q+ K+LG + P + +P++ + L Sbjct 769 LLSEATMASLIS-HGLPVSENKTQQTPGTIKFLGQIISPNHLTYD--AVPKVPIRSRWAL 825 Query 251 NKLQKLVGELVWRQSIIGKSIPNI 274 +LQ L+GE+ W + K P + Sbjct 826 PELQALLGEIQW----VSKGTPTL 845 >RecName: Full=Gag-Pro-Pol polyprotein; AltName: Full=Pr160Gag-Pro-Pol; Contains: RecName: Full=Matrix protein p19; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p15-pro; Short=NC'; Short=NC-pro; Contains: RecName: Full=Protease; Short=PR; Contains: RecName: Full=p1; Contains: RecName: Full=Reverse transcriptase/ribonuclease H, p49 subunit; Short=p49 RT; Contains: RecName: Full=Reverse transcriptase/ribonuclease H, p62 subunit; Short=p62 RT; Contains: RecName: Full=Integrase; Short=IN [HTLV-1 isolate Mel 15] Sequence ID: P0C211.2 Length: 1462 Range 1: 591 to 845 Score:126 bits(316), Expect:8e-30, Method:Compositional matrix adjust., Identities:84/264(32%), Positives:134/264(50%), Gaps:12/264(4%) Query 14 PHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRE 73 P + Q+PL E+L+ L ++ K +E G + P N P+F +KK +G WR + D R Sbjct 591 PEISQFPLNPERLQALQHLVRKALEAGHI--EPYTGPGNNPVFPVKKANGTWRFIHDLRA 648 Query 74 LNKQTEDLTEAQLGLPHPGGLQKK-KHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNL 132 N T DL+ + G P L H+ +D+ DA+F IPL + ++ Y FT+ N Sbjct 649 TNSLTVDLSSSSPGPPDLSSLPTTLAHLQTIDLKDAFFQIPLPKQFQPYFAFTVPQQCNY 708 Query 133 GPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKH 192 GP RY WKVLPQG+K SP++++ + IL+ Q P+ YMDDI + S Sbjct 709 GPGTRYAWKVLPQGFKNSPTLFEMQLASILQPIRQAFPQCVILQYMDDILLASPSPEDLQ 768 Query 193 REIVKDLANYIAQYGFTLPEEKRQKGY-PAKWLGFELHPQTWKFQK-HTLPELTKGTITL 250 + +A+ I+ +G + ++K Q+ K+LG + P + T+P + L Sbjct 769 QLSEATMASLIS-HGLPVSQDKTQQTPGTIKFLGQIISPNHITYDAVPTVP--IRSRWAL 825 Query 251 NKLQKLVGELVWRQSIIGKSIPNI 274 +LQ L+GE+ W + K P + Sbjct 826 PELQALLGEIQW----VSKGTPTL 845 >RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p12-pro; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Bovine leukemia virus (JAPANESE ISOLATE BLV-1)] Sequence ID: P03361.2 Length: 1416 Range 1: 570 to 809 Score:125 bits(315), Expect:9e-30, Method:Compositional matrix adjust., Identities:79/245(32%), Positives:128/245(52%), Gaps:8/245(3%) Query 21 LTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRELNKQTED 80 L E+L+ L +++ + +E G + +P N P+F ++K +G WR + D R N T+ Sbjct 570 LNLERLQALQDLVHRSLEAGYI--SPWDGPGNNPVFPVRKPNGAWRFVHDLRATNALTKP 627 Query 81 LTEAQLGLPHPGGL-QKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPCKRYY 139 + G P + H+ LD+ DA+F IP+ + +R Y FTL SP L P +R+ Sbjct 628 IPALSPGPPDLTAIPTHPPHIICLDLKDAFFQIPVEDRFRFYLSFTLPSPGGLQPHRRFA 687 Query 140 WKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHREIVKDL 199 W+VLPQG+ SP++++ +QE L + YMDDI S E ++ + + L Sbjct 688 WRVLPQGFINSPALFERALQEPLRQVSAAFSQSLLVSYMDDILYASPTE-EQRSQCYQAL 746 Query 200 ANYIAQYGFTLPEEK-RQKGYPAKWLGFELHPQTWKFQKHTLPEL-TKGTITLNKLQKLV 257 A + GF + EK Q P +LG +H Q +Q +LP L I+L++LQ ++ Sbjct 747 AARLRDLGFQVASEKTSQTPSPVPFLGQMVHEQIVTYQ--SLPTLQISSPISLHQLQAVL 804 Query 258 GELVW 262 G+L W Sbjct 805 GDLQW 809 >RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p12-pro; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Bovine leukemia virus (AUSTRALIAN ISOLATE)] Sequence ID: P25059.2 Length: 1416 Range 1: 570 to 809 Score:124 bits(311), Expect:3e-29, Method:Compositional matrix adjust., Identities:77/245(31%), Positives:130/245(53%), Gaps:8/245(3%) Query 21 LTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRELNKQTED 80 L E+L+ L +++ + +E G + +P N P+F ++K +G WR + D R N T+ Sbjct 570 LNLERLQALQDLVHRSLEAGYI--SPWDGPGNNPVFPVRKPNGAWRFVHDLRVTNALTKP 627 Query 81 LTEAQLGLPHPGGLQKK-KHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPCKRYY 139 + G P + H+ LD+ DA+F IP+ + +R Y FTL +P L P +R+ Sbjct 628 IPALSPGPPDLTAIPTHLPHIICLDLKDAFFQIPVEDRFRSYFAFTLPTPGGLQPHRRFA 687 Query 140 WKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHREIVKDL 199 W+VLPQG+ SP++++ +QE L + YMDDI S E ++ + + + Sbjct 688 WRVLPQGFINSPALFERALQEPLRQVSAAFSQSLLVSYMDDILYVSPTE-EQRLQCYQTM 746 Query 200 ANYIAQYGFTLPEEK-RQKGYPAKWLGFELHPQTWKFQKHTLPEL-TKGTITLNKLQKLV 257 A ++ GF + EK RQ P +LG +H + +Q +LP L I+L++LQ ++ Sbjct 747 AAHLRDLGFQVASEKTRQTPSPVPFLGQMVHERMVTYQ--SLPTLQISSPISLHQLQTVL 804 Query 258 GELVW 262 G+L W Sbjct 805 GDLQW 809 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p10; Short=MA; Contains: RecName: Full=p20; Contains: RecName: Full=Capsid protein p25; Short=CA; Contains: RecName: Full=Nucleocapsid protein p14; Short=NC-pol; Contains: RecName: Full=Protease p15; Short=PR; Contains: RecName: Full=Reverse transcriptase/ribonuclease H p90; Short=RT; Contains: RecName: Full=Integrase p46; Short=IN [Walleye dermal sarcoma virus] Sequence ID: O92815.2 Length: 1752 Range 1: 758 to 953 Score:93.2 bits(230), Expect:2e-19, Method:Compositional matrix adjust., Identities:67/208(32%), Positives:109/208(52%), Gaps:19/208(9%) Query 1 PITKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKK 60 PIT +K+K+ + P + Q+PL ++K +GL +I L +G L K H CNTPIF IKK Sbjct 758 PIT-IKIKDNASLPSIRQYPLPKDKTEGLRPLISSLENQGILIKC--HSPCNTPIFPIKK 814 Query 61 KS-GKWRMLIDFRELNKQTEDLTEAQLGLPHP--GGLQKKKH-VTILDIGDAYFTIPLYE 116 ++RM+ D R +N LT A + P L H T++D+ +A+F++P+++ Sbjct 815 AGRDEYRMIHDLRAINNIVAPLT-AVVASPTTVLSNLAPSLHWFTVIDLSNAFFSVPIHK 873 Query 117 PYREYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGI 176 + FT +Y W VLPQG+ SP+++ + + L I+ + I Sbjct 874 DSQYLFAFTFEG-------HQYTWTVLPQGFIHSPTLFSQALYQSLHK-IKFKISSEICI 925 Query 177 YMDDIYIGS---DLEIKKHREIVKDLAN 201 YMDD+ I S D +K +++ LA+ Sbjct 926 YMDDVLIASKDRDTNLKDTAVMLQHLAS 953 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Rabbitpox virus Utrecht] Sequence ID: Q6RZR1.1 Length: 147 Range 1: 12 to 146 Score:84.0 bits(206), Expect:3e-19, Method:Composition-based stats., Identities:46/135(34%), Positives:74/135(54%), Gaps:2/135(1%) Query 544 FLAKEGEGILPKREED--AGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSS 601 F+ + P R+ AGYDL + TI PG+ + I ++ +++ K + IA +S Sbjct 12 FVKETNRAKSPTRQSPYAAGYDLYSAYDYTIPPGERQLIKTDISMSMPKFCYGRIAPRSG 71 Query 602 MAAKGVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGES 661 ++ KG+ GG+ID Y+G I VI+ N+ K + G + AQLI + +LE Sbjct 72 LSLKGIDIGGGVIDEDYRGNIGVILINNGKCTFNVNTGDRIAQLIYQRIYYPELEEVQSL 131 Query 662 RKTERGEKGFGSTGM 676 T+RG++GFGSTG+ Sbjct 132 DSTDRGDQGFGSTGL 146 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Monkeypox virus] Sequence ID: A0A7H0DN19.1 Length: 151 Range 1: 16 to 150 Score:84.0 bits(206), Expect:4e-19, Method:Composition-based stats., Identities:46/135(34%), Positives:74/135(54%), Gaps:2/135(1%) Query 544 FLAKEGEGILPKREED--AGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSS 601 F+ + P R+ AGYDL + TI PG+ + I ++ +++ K + IA +S Sbjct 16 FVKETNRAKSPTRQSPGAAGYDLYSAYDYTIPPGERQLIKTDISMSMPKFCYGRIAPRSG 75 Query 602 MAAKGVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGES 661 ++ KG+ GG+ID Y+G I VI+ N+ K + G + AQLI + +LE Sbjct 76 LSLKGIDIGGGVIDEDYRGSIGVILINNGKCTFNVNTGDRIAQLIYQRIYYPELEEVQSL 135 Query 662 RKTERGEKGFGSTGM 676 T+RG++GFGSTG+ Sbjct 136 DSTDRGDQGFGSTGL 150 >RecName: Full=Pro-Pol polyprotein; AltName: Full=Pr125Pol; Contains: RecName: Full=Protease/Reverse transcriptase/ribonuclease H; AltName: Full=p87Pro-RT-RNaseH; Contains: RecName: Full=Protease/Reverse transcriptase; AltName: Full=p65Pro-RT; Contains: RecName: Full=Ribonuclease H; Short=RNase H; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=p42In [Human spumaretrovirus] Sequence ID: P14350.2 Length: 1143 Range 1: 149 to 412 Score:91.3 bits(225), Expect:5e-19, Method:Compositional matrix adjust., Identities:81/287(28%), Positives:147/287(51%), Gaps:34/287(11%) Query 4 KVKLKEGCTGPHVP----QWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIK 59 K++ TG + P Q+P+ + + +ID L+++G L P + T NTP++ + Sbjct 149 KIRPHNIATGDYPPRPQKQYPINPKAKPSIQIVIDDLLKQGVL--TPQNSTMNTPVYPVP 206 Query 60 KKSGKWRMLIDFRELNKQTEDLTEAQLGLPHPGG----LQKKKHVTILDIGDAYFTIPLY 115 K G+WRM++D+RE+NK T LT AQ H G + ++K+ T LD+ + ++ P+ Sbjct 207 KPDGRWRMVLDYREVNK-TIPLTAAQNQ--HSAGILATIVRQKYKTTLDLANGFWAHPIT 263 Query 116 EPYREYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFG 175 T FT K+Y W LPQG+ SP++ FT + D +++ P +Q Sbjct 264 PESYWLTAFTWQG-------KQYCWTRLPQGFLNSPAL--FTADVV--DLLKEIPNVQ-- 310 Query 176 IYMDDIYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGY-PAKWLGFELHPQTWK 234 +Y+DDIY+ D + K+H + ++ + + Q G+ + +K + G ++LGF + + Sbjct 311 VYVDDIYLSHD-DPKEHVQQLEKVFQILLQAGYVVSLKKSEIGQKTVEFLGFNITKEGRG 369 Query 235 FQKHTLPELTKGTI--TLNKLQKLVGELVWRQSIIGKSIPNILKLME 279 +L T L +LQ ++G L + ++ IPN +L++ Sbjct 370 LTDTFKTKLLNITPPKDLKQLQSILGLLNFARNF----IPNFAELVQ 412 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Vaccinia virus Copenhagen] Sequence ID: P68634.1 Length: 147 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Vaccinia virus L-IPV] Sequence ID: P68635.1 Length: 147 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Vaccinia virus Ankara] Sequence ID: Q76RE7.1 Length: 147 Range 1: 12 to 146 Score:83.6 bits(205), Expect:6e-19, Method:Composition-based stats., Identities:46/135(34%), Positives:73/135(54%), Gaps:2/135(1%) Query 544 FLAKEGEGILPKREED--AGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSS 601 F+ + P R+ AGYDL + TI PG+ + I ++ +++ K + IA +S Sbjct 12 FVKETNRAKSPTRQSPGAAGYDLYSAYDYTIPPGERQLIKTDISMSMPKICYGRIAPRSG 71 Query 602 MAAKGVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGES 661 ++ KG+ GG+ID Y+G I VI+ N+ K + G + AQLI + +LE Sbjct 72 LSLKGIDIGGGVIDEDYRGNIGVILINNGKCTFNVNTGDRIAQLIYQRIYYPELEEVQSL 131 Query 662 RKTERGEKGFGSTGM 676 T RG++GFGSTG+ Sbjct 132 DSTNRGDQGFGSTGL 146 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Vaccinia virus WR] Sequence ID: P17374.2 Length: 147 Range 1: 12 to 146 Score:83.6 bits(205), Expect:6e-19, Method:Composition-based stats., Identities:46/135(34%), Positives:73/135(54%), Gaps:2/135(1%) Query 544 FLAKEGEGILPKREED--AGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSS 601 F+ + P R+ AGYDL + TI PG+ + I ++ +++ K + IA +S Sbjct 12 FVKETNRAKSPTRQSPYAAGYDLYSAYDYTIPPGERQLIKTDISMSMPKFCYGRIAPRSG 71 Query 602 MAAKGVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGES 661 ++ KG+ GG+ID Y+G I VI+ N+ K + G + AQLI + +LE Sbjct 72 LSLKGIDIGGGVIDEDYRGNIGVILINNGKCTFNVNTGDRIAQLIYQRIYYPELEEVQSL 131 Query 662 RKTERGEKGFGSTGM 676 T RG++GFGSTG+ Sbjct 132 DSTNRGDQGFGSTGL 146 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Cowpox virus (strain GRI-90)] Sequence ID: P87630.1 Length: 147 Range 1: 12 to 146 Score:83.2 bits(204), Expect:7e-19, Method:Composition-based stats., Identities:46/135(34%), Positives:73/135(54%), Gaps:2/135(1%) Query 544 FLAKEGEGILPKREED--AGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSS 601 F+ + P R+ AGYDL + TI PG+ + I ++ +++ K + IA +S Sbjct 12 FVKETNRAKSPTRQSPGAAGYDLYSAYDYTIPPGERQLIKTDISMSMPKFCYGRIAPRSG 71 Query 602 MAAKGVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGES 661 ++ KG+ GG+ID Y+G I VI+ N+ K + G + AQLI + +LE Sbjct 72 LSLKGIDIGGGVIDEDYRGNIGVILINNGKCTFNVNTGDRIAQLIYQRIYYPELEEVQSL 131 Query 662 RKTERGEKGFGSTGM 676 T+RG +GFGSTG+ Sbjct 132 DSTDRGAQGFGSTGL 146 >RecName: Full=Pro-Pol polyprotein; AltName: Full=Pr125Pol; Contains: RecName: Full=Protease/Reverse transcriptase/ribonuclease H; AltName: Full=p87Pro-RT-RNaseH; Contains: RecName: Full=Protease/Reverse transcriptase; AltName: Full=p65Pro-RT; Contains: RecName: Full=Ribonuclease H; Short=RNase H; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=p42In [Pan troglodytes foamy virus] Sequence ID: Q87040.1 Length: 1146 Range 1: 149 to 422 Score:90.1 bits(222), Expect:1e-18, Method:Compositional matrix adjust., Identities:82/297(28%), Positives:148/297(49%), Gaps:34/297(11%) Query 4 KVKLKEGCTGPHVP----QWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIK 59 K++ TG + P Q+P+ + + +ID L+++G L P + T NTP++ + Sbjct 149 KIRPHNIATGDYPPRPQKQYPINPKAKPSIQIVIDDLLKQGVL--TPQNSTMNTPVYPVP 206 Query 60 KKSGKWRMLIDFRELNKQTEDLTEAQLGLPHPGG----LQKKKHVTILDIGDAYFTIPLY 115 K G+WRM++D+RE+NK T LT AQ H G + ++K+ T LD+ + ++ P+ Sbjct 207 KPDGRWRMVLDYREVNK-TIPLTAAQNQ--HSAGILATIVRQKYKTTLDLANGFWAHPIT 263 Query 116 EPYREYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFG 175 T FT K+Y W LPQG+ SP++ FT + D +++ P +Q Sbjct 264 PDSYWLTAFTWQG-------KQYCWTRLPQGFLNSPAL--FTADAV--DLLKEVPNVQ-- 310 Query 176 IYMDDIYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKG-YPAKWLGFELHPQTWK 234 +Y+DDIY+ D +H + ++ + + Q G+ + +K + G ++LGF + + Sbjct 311 VYVDDIYLSHD-NPHEHIQQLEKVFQILLQAGYVVSLKKSEIGQRTVEFLGFNITKEGRG 369 Query 235 FQKHTLPELTKGTI--TLNKLQKLVGELVWRQSIIGKSIPNILKLMEGDRELQSERK 289 +L T L +LQ ++G L + ++ IPN +L++ L + K Sbjct 370 LTDTFKTKLLNVTPPKDLKQLQSILGLLNFARNF----IPNFAELVQTLYNLIASSK 422 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Variola virus human/India/Ind3/1967] Sequence ID: P0DSZ7.1 Length: 147 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Variola virus] Sequence ID: P0DSZ8.1 Length: 147 Range 1: 12 to 146 Score:82.0 bits(201), Expect:1e-18, Method:Composition-based stats., Identities:45/135(33%), Positives:74/135(54%), Gaps:2/135(1%) Query 544 FLAKEGEGILPKREED--AGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSS 601 F+ + P R+ AGYDL + TI PG+ + I ++ +++ K + IA +S Sbjct 12 FVKETNRAKSPTRQSPYAAGYDLYSAYDYTIPPGERQLIKTDISMSMPKFCYGRIAPRSG 71 Query 602 MAAKGVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGES 661 ++ KG+ GG+ID Y+G I VI+ N+ K + G + AQLI + +L+ Sbjct 72 LSLKGIDIGGGVIDEDYRGNIGVILINNGKYTFNVNTGDRIAQLIYQRIYYPELKEVQSL 131 Query 662 RKTERGEKGFGSTGM 676 T+RG++GFGSTG+ Sbjct 132 DSTDRGDQGFGSTGL 146 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Camelpox virus CMS] Sequence ID: Q775Z7.1 Length: 147 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Camelpox virus M-96] Sequence ID: Q8V2Y0.1 Length: 147 Range 1: 12 to 146 Score:80.9 bits(198), Expect:4e-18, Method:Composition-based stats., Identities:45/135(33%), Positives:73/135(54%), Gaps:2/135(1%) Query 544 FLAKEGEGILPKREED--AGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSS 601 F+ + P R+ AGYDL TI PG+ + I ++ +++ K + IA +S Sbjct 12 FVKETNRAKSPTRQSPYAAGYDLYSAYYYTIPPGERQLIKTDISMSMPKFCYGRIAPRSG 71 Query 602 MAAKGVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGES 661 ++ KG+ GG+ID Y+G I VI+ N+ K + G + AQLI + +L+ Sbjct 72 LSLKGIDIGGGVIDEDYRGNIGVILINNGKCTFNVNTGDRIAQLIYQRIYYPELKEVQSL 131 Query 662 RKTERGEKGFGSTGM 676 T+RG++GFGSTG+ Sbjct 132 DSTDRGDQGFGSTGL 146 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Reticuloendotheliosis virus] Sequence ID: P03360.2 Length: 1152 Range 1: 138 to 352 Score:86.7 bits(213), Expect:1e-17, Method:Compositional matrix adjust., Identities:64/222(29%), Positives:107/222(48%), Gaps:14/222(6%) Query 15 HVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SGKWRMLIDFRE 73 V Q+P+T E + L E I K G L P H NTP+ ++K + ++RM+ D RE Sbjct 138 RVRQYPITLEAKRSLRETIRKFRAAGIL--RPVHSPWNTPLLPVRKSGTSEYRMVQDLRE 195 Query 74 LNKQTEDLTEAQLGLPHPGGL-----QKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLS 128 +NK+ E + +P+P L + ++LD+ DA+F IPL + F Sbjct 196 VNKRVETIHPT---VPNPYTLLSLLPPDRIWYSVLDLKDAFFCIPLAPESQLIFAFEWAD 252 Query 129 PNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLE 188 G + W LPQG+K SP+++ + L+ + HP + Y+DD+ I +D + Sbjct 253 AEE-GESGQLTWTRLPQGFKNSPTLFDEALNRDLQGFRLDHPSVSLLQYVDDLLIAADTQ 311 Query 189 IKKHREIVKDLANYIAQYGFTLPEEKRQKGY-PAKWLGFELH 229 +DL +A+ G+ + +K Q +LGF++H Sbjct 312 -AACLSATRDLLMTLAELGYRVSGKKAQLCQEEVTYLGFKIH 352 >RecName: Full=Pol polyprotein; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Feline endogenous virus ECE1] Sequence ID: P31792.1 Length: 1046 Range 1: 25 to 224 Score:85.5 bits(210), Expect:3e-17, Method:Compositional matrix adjust., Identities:58/206(28%), Positives:103/206(50%), Gaps:15/206(7%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGK 64 + LK + Q+P+++E G+ I + +E G L W NTP+ +KK + Sbjct 25 IDLKPTAMPVSIRQYPMSKEAHMGIQPHITRFLELGVLRPCRSPW--NTPLLPVKKPGTR 82 Query 65 -WRMLIDFRELNKQTEDLTEAQLGLPHPGGL-----QKKKHVTILDIGDAYFTIPLYEPY 118 +R + D RE+NK+T D+ +P+P L + T+LD+ DA+F +PL Sbjct 83 DYRPVQDLREVNKRTMDIHPT---VPNPYNLLSTLSPDRTWYTVLDLKDAFFCLPLAPQS 139 Query 119 REYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYM 178 +E F P G + W LPQG+K SP+++ + L D+ QHPE+ Y+ Sbjct 140 QELFAFEWRDPER-GISGQLTWTRLPQGFKNSPTLFDEALHRDLTDFRTQHPEVTLLQYV 198 Query 179 DDIYIGSDLE---IKKHREIVKDLAN 201 DD+ + + + I+ + ++++L + Sbjct 199 DDLLLAAPTKEACIRGTKHLLRELGD 224 >RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Short=PR; AltName: Full=p14; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=p80; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=p46 [Moloney murine leukemia virus isolate Shinnick] Sequence ID: P03355.5 Length: 1738 Range 1: 709 to 908 Score:85.1 bits(209), Expect:5e-17, Method:Compositional matrix adjust., Identities:59/206(29%), Positives:105/206(50%), Gaps:15/206(7%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 + LK T + Q+P+++E G+ I +L+++G L W NTP+ +KK + Sbjct 709 IPLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPW--NTPLLPVKKPGTN 766 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHP----GGLQKKKH-VTILDIGDAYFTIPLYEPY 118 +R + D RE+NK+ ED+ +P+P GL T+LD+ DA+F + L+ Sbjct 767 DYRPVQDLREVNKRVEDIHPT---VPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTS 823 Query 119 REYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYM 178 + F P +G + W LPQG+K SP+++ + L D+ QHP++ Y+ Sbjct 824 QPLFAFEWRDPE-MGISGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYV 882 Query 179 DDIYIGSDLEI---KKHREIVKDLAN 201 DD+ + + E+ + R +++ L N Sbjct 883 DDLLLAATSELDCQQGTRALLQTLGN 908 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [AKR (endogenous) murine leukemia virus] Sequence ID: P03356.3 Length: 1734 Range 1: 708 to 892 Score:84.7 bits(208), Expect:7e-17, Method:Compositional matrix adjust., Identities:56/191(29%), Positives:98/191(51%), Gaps:12/191(6%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 + LK T + Q+P+++E G+ I +L+++G L W NTP+ +KK + Sbjct 708 IPLKATSTPVSIKQYPMSQEAKLGIKPHIQRLLDQGILVPCQSPW--NTPLLPVKKPGTN 765 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGL-----QKKKHVTILDIGDAYFTIPLYEPY 118 +R + D RE+NK+ ED+ +P+P L + T+LD+ DA+F + L+ Sbjct 766 DYRPVQDLREVNKRVEDIHPT---VPNPYNLLSGLPPSHRWYTVLDLKDAFFCLRLHPTS 822 Query 119 REYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYM 178 + F P +G + W LPQG+K SP+++ + L D+ QHP++ Y+ Sbjct 823 QPLFAFEWRDPG-MGISGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYV 881 Query 179 DDIYIGSDLEI 189 DDI + + E+ Sbjct 882 DDILLAATSEL 892 >RecName: Full=Pro-Pol polyprotein; AltName: Full=Pr125Pol; Contains: RecName: Full=Protease/Reverse transcriptase/ribonuclease H; AltName: Full=p87Pro-RT-RNaseH; Contains: RecName: Full=Protease/Reverse transcriptase; AltName: Full=p65Pro-RT; Contains: RecName: Full=Ribonuclease H; Short=RNase H; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=p42In [Feline foamy virus] Sequence ID: O93209.1 Length: 1156 Range 1: 178 to 401 Score:84.3 bits(207), Expect:7e-17, Method:Compositional matrix adjust., Identities:71/242(29%), Positives:126/242(52%), Gaps:24/242(9%) Query 32 IIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRELNKQTEDLT-EAQLGLPH 90 +I+ L+++G L + T NTP++ + K +G+WRM++D+R +NK T + + Q Sbjct 178 VINDLLKQGVLIQK--ESTMNTPVYPVPKPNGRWRMVLDYRAVNKVTPLIAVQNQHSYGI 235 Query 91 PGGLQKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPCKRYYWKVLPQGWKLS 150 G L K ++ T +D+ + ++ P+ T FT K+Y W VLPQG+ S Sbjct 236 LGSLFKGRYKTTIDLSNGFWAHPIVPEDYWITAFTWQG-------KQYCWTVLPQGFLNS 288 Query 151 PSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHREIVKDLANYIAQYGFTL 210 P ++ + ++L Q P ++ +Y+DD+YI D E K+H E + L N + + G+ + Sbjct 289 PGLFTGDVVDLL----QGIPNVE--VYVDDVYISHDSE-KEHLEYLDILFNRLKEAGYII 341 Query 211 PEEKRQKGYP-AKWLGFELHPQ----TWKFQKHTLPELTKGTITLNKLQKLVGELVWRQS 265 +K +LGF++ + T F K L +T T TL +LQ ++G L + ++ Sbjct 342 SLKKSNIANSIVDFLGFQITNEGRGLTDTF-KEKLENITAPT-TLKQLQSILGLLNFARN 399 Query 266 II 267 I Sbjct 400 FI 401 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Friend murine leukemia virus (ISOLATE 57)] Sequence ID: P26810.2 Length: 1739 Range 1: 710 to 933 Score:84.7 bits(208), Expect:7e-17, Method:Compositional matrix adjust., Identities:64/231(28%), Positives:114/231(49%), Gaps:14/231(6%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 + LK T + Q+P+++E G+ I +L+++G L W NTP+ +KK + Sbjct 710 ISLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPW--NTPLLPVKKPGTN 767 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHP----GGLQKKKH-VTILDIGDAYFTIPLYEPY 118 +R + D RE+NK+ ED+ +P+P GL T+LD+ DA+F + L+ Sbjct 768 DYRPVQDLREVNKRVEDIHPT---VPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTS 824 Query 119 REYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYM 178 + F P +G + W LPQG+K SP+++ + L D+ QHP++ Y+ Sbjct 825 QSLFAFEWKDPE-MGISGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYV 883 Query 179 DDIYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYP-AKWLGFEL 228 DD+ + + E+ ++ + L + G+ +K Q K+LG+ L Sbjct 884 DDLLLAATSEL-DCQQGTRALLQTLGDLGYRASAKKAQICQKQVKYLGYLL 933 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Friend murine leukemia virus (ISOLATE FB29)] Sequence ID: P26809.2 Length: 1738 Range 1: 709 to 932 Score:84.7 bits(208), Expect:7e-17, Method:Compositional matrix adjust., Identities:64/231(28%), Positives:114/231(49%), Gaps:14/231(6%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 + LK T + Q+P+++E G+ I +L+++G L W NTP+ +KK + Sbjct 709 IPLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPW--NTPLLPVKKPGTN 766 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHP----GGLQKKKH-VTILDIGDAYFTIPLYEPY 118 +R + D RE+NK+ ED+ +P+P GL T+LD+ DA+F + L+ Sbjct 767 DYRPVQDLREVNKRVEDIHPT---VPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTS 823 Query 119 REYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYM 178 + F P +G + W LPQG+K SP+++ + L D+ QHP++ Y+ Sbjct 824 QSLFAFEWRDPE-MGISGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYV 882 Query 179 DDIYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYP-AKWLGFEL 228 DD+ + + E+ ++ + L + G+ +K Q K+LG+ L Sbjct 883 DDLLLAATSEL-DCQQGTRALLQTLGDLGYRASAKKAQICQKQVKYLGYLL 932 >RecName: Full=Gag-pol polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Murine leukemia virus (strain BM5 ECO)] Sequence ID: Q7SVK7.2 Length: 1734 Range 1: 708 to 918 Score:84.3 bits(207), Expect:9e-17, Method:Compositional matrix adjust., Identities:61/218(28%), Positives:107/218(49%), Gaps:13/218(5%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 + LK T + Q+P++ E G+ I +L+++G L W NTP+ +KK + Sbjct 708 IPLKATSTPVSIQQYPMSHEARLGIKPHIQRLLDQGILVPCQSPW--NTPLLPVKKPGTN 765 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHP----GGLQKKKH-VTILDIGDAYFTIPLYEPY 118 +R + D RE+NK+ ED+ +P+P GL T+LD+ DA+F + L+ Sbjct 766 DYRPVQDLREVNKRVEDIHPT---VPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTS 822 Query 119 REYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYM 178 + F P +G + W LPQG+K SP+++ + L D+ QHP++ Y+ Sbjct 823 QPLFAFEWRDPG-MGISGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYV 881 Query 179 DDIYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQ 216 DDI + + E+ ++ + L + G+ +K Q Sbjct 882 DDILLAATSEL-DCQQGTRALLQTLGDLGYRASAKKAQ 918 >RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10; Short=NC-pol; Contains: RecName: Full=Protease p14; Short=PR; Contains: RecName: Full=Reverse transcriptase/ribonuclease H p80; Short=RT; Contains: RecName: Full=Integrase p46; Short=IN [Xenotropic MuLV-related virus VP62] Sequence ID: A1Z651.1 Length: 1733 Range 1: 707 to 917 Score:84.0 bits(206), Expect:1e-16, Method:Compositional matrix adjust., Identities:61/218(28%), Positives:106/218(48%), Gaps:13/218(5%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 + LK T + Q+P+++E G+ I +L+++G L W NTP+ +KK + Sbjct 707 IPLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPW--NTPLLPVKKPGTN 764 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHP----GGLQKKKH-VTILDIGDAYFTIPLYEPY 118 +R + D RE+NK+ ED+ +P+P GL T+LD+ DA+F + L+ Sbjct 765 DYRPVQDLREVNKRVEDIHPT---VPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTS 821 Query 119 REYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYM 178 + F P +G + W LPQG+K SP+++ + L D+ QHP++ Y+ Sbjct 822 QPLFAFEWRDPE-MGISGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYV 880 Query 179 DDIYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQ 216 DD+ + + E R + L + G+ +K Q Sbjct 881 DDLLLAATSEQDCQRG-TRALLQTLGNLGYRASAKKAQ 917 >RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10; Short=NC-pol; Contains: RecName: Full=Protease p14; Short=PR; Contains: RecName: Full=Reverse transcriptase/ribonuclease H p80; Short=RT; Contains: RecName: Full=Integrase p46; Short=IN [Xenotropic MuLV-related virus VP35] Sequence ID: Q2F7J3.1 Length: 1733 Range 1: 707 to 917 Score:84.0 bits(206), Expect:1e-16, Method:Compositional matrix adjust., Identities:61/218(28%), Positives:106/218(48%), Gaps:13/218(5%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 + LK T + Q+P+++E G+ I +L+++G L W NTP+ +KK + Sbjct 707 IPLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPW--NTPLLPVKKPGTN 764 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHP----GGLQKKKH-VTILDIGDAYFTIPLYEPY 118 +R + D RE+NK+ ED+ +P+P GL T+LD+ DA+F + L+ Sbjct 765 DYRPVQDLREVNKRVEDIHPT---VPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTS 821 Query 119 REYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYM 178 + F P +G + W LPQG+K SP+++ + L D+ QHP++ Y+ Sbjct 822 QPLFAFEWRDPE-MGISGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYV 880 Query 179 DDIYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQ 216 DD+ + + E R + L + G+ +K Q Sbjct 881 DDLLLAATSEQDCQRG-TRALLQTLGNLGYRASAKKAQ 917 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Friend murine leukemia virus (ISOLATE PVC-211)] Sequence ID: P26808.2 Length: 1738 Range 1: 709 to 932 Score:84.0 bits(206), Expect:1e-16, Method:Compositional matrix adjust., Identities:63/231(27%), Positives:113/231(48%), Gaps:14/231(6%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 + L+ T + Q+P++ E G+ I +L+++G L W NTP+ +KK + Sbjct 709 IPLRAASTPVSIKQYPMSREARLGIKPHIQRLLDQGILVPCQSPW--NTPLLPVKKPGTN 766 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHP----GGLQKKKH-VTILDIGDAYFTIPLYEPY 118 +R + D RE+NK+ ED+ +P+P GL T+LD+ DA+F + L+ Sbjct 767 DYRPVQDLREVNKRVEDIHPT---VPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTS 823 Query 119 REYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYM 178 + F P +G + W LPQG+K SP+++ + L D+ QHP++ Y+ Sbjct 824 QSLFAFEWRDPE-MGISGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYV 882 Query 179 DDIYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYP-AKWLGFEL 228 DD+ + + E+ ++ + L + G+ +K Q K+LG+ L Sbjct 883 DDLLLAATSEL-DCQQGTRALLQTLGDLGYRASAKKAQICQKQVKYLGYLL 932 >RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10; Short=NC-pol; Contains: RecName: Full=Protease p14; Short=PR; Contains: RecName: Full=Reverse transcriptase/ribonuclease H p80; Short=RT; Contains: RecName: Full=Integrase p46; Short=IN [Xenotropic MuLV-related virus VP42] Sequence ID: Q2F7J0.1 Length: 1733 Range 1: 707 to 917 Score:84.0 bits(206), Expect:1e-16, Method:Compositional matrix adjust., Identities:61/218(28%), Positives:106/218(48%), Gaps:13/218(5%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 + LK T + Q+P+++E G+ I +L+++G L W NTP+ +KK + Sbjct 707 IPLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPW--NTPLLPVKKPGTN 764 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHP----GGLQKKKH-VTILDIGDAYFTIPLYEPY 118 +R + D RE+NK+ ED+ +P+P GL T+LD+ DA+F + L+ Sbjct 765 DYRPVQDLREVNKRVEDIHPT---VPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTS 821 Query 119 REYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYM 178 + F P +G + W LPQG+K SP+++ + L D+ QHP++ Y+ Sbjct 822 QPLFAFEWRDPE-MGISGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYV 880 Query 179 DDIYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQ 216 DD+ + + E R + L + G+ +K Q Sbjct 881 DDLLLAATSEQDCQRG-TRALLQTLGNLGYRASAKKAQ 917 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Baboon endogenous virus strain M7] Sequence ID: P10272.2 Length: 1727 Range 1: 706 to 916 Score:83.2 bits(204), Expect:2e-16, Method:Compositional matrix adjust., Identities:62/218(28%), Positives:104/218(47%), Gaps:13/218(5%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGK 64 + LK + Q+P++ E G+ + I K +E G L W NTP+ +KK + Sbjct 706 IDLKPTAVPVSIKQYPMSLEAHMGIRQHIIKFLELGVLRPCRSPW--NTPLLPVKKPGTQ 763 Query 65 -WRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKH-----VTILDIGDAYFTIPLYEPY 118 +R + D RE+NK+T D+ +P+P L T+LD+ DA+F +PL Sbjct 764 DYRPVQDLREINKRTVDIHPT---VPNPYNLLSTLKPDYSWYTVLDLKDAFFCLPLAPQS 820 Query 119 REYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYM 178 +E F P G + W LPQG+K SP+++ + L D+ QHPE+ Y+ Sbjct 821 QELFAFEWKDPER-GISGQLTWTRLPQGFKNSPTLFDEALHRDLTDFRTQHPEVTLLQYV 879 Query 179 DDIYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQ 216 DD+ + + + K + + L + + G+ +K Q Sbjct 880 DDLLLAAPTK-KACTQGTRHLLQELGEKGYRASAKKAQ 916 >RecName: Full=Intracisternal A-particle Pol-related polyprotein; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Mouse intracisternal A-particle MIAIL3] Sequence ID: P12894.1 Length: 814 Range 1: 66 to 484 Score:81.6 bits(200), Expect:4e-16, Method:Compositional matrix adjust., Identities:102/436(23%), Positives:181/436(41%), Gaps:55/436(12%) Query 134 PCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHR 193 P KRY WKVLPQG SP++ Q +Q+ L +Q P + +YMDDI + ++ + Sbjct 66 PDKRYQWKVLPQGMSNSPTMCQLYVQKALLPVREQFPSLILLLYMDDILLCHK-DLTMLQ 124 Query 194 EIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPELTKGTI-TLNK 252 + L ++Q+G + EK Q ++LG + P QK E+ + + TLN Sbjct 125 KAYPFLLKTLSQWGLQIATEKVQISDTGQFLGSVVSPDKIVPQKV---EIRRDHLHTLND 181 Query 253 LQKLVGELVWRQSIIGKSIPN-----ILKLMEGDRELQSERKIEEVHVKEWEACRKKLEE 307 QKL+G++ W + + IP+ + ++EGD + S R + + + K L+ Sbjct 182 FQKLLGDINWLRPFL--KIPSAELRPLFSILEGDPHISSPRTLTLAANQALQKVEKALQN 239 Query 308 MEGNYYNKDKDVYGQLAWGDKAIEYIVYQEKGKPLWVNVVHNIKNLSI----PQQVIKAA 363 + +D + + + V + G LW++ N+ I P + + A Sbjct 240 AQLQRI-EDSQPFSLCVFKTAQLPTAVLWQNGPLLWIH--PNVSPAKIIDWYPDAIAQLA 296 Query 364 QKLTQEVIIRTGKIPWIL-----------LPGKEEDWRLELQLGNITWMPKFWSCYRGH- 411 K + I G+ P++L L DW + + ++ K + Y H Sbjct 297 LKGLKAAITHFGQSPYLLIVPYTAAQVQTLAAASNDWAVLV----TSFSGKIDNHYPKHP 352 Query 412 ---------TRWRKRNIIEEVVEGPTYYTDGGKKNKVGSLGFIVSTGEKFRK-HEEGTNQ 461 + + + + G YTDG K +G V+ G+ K + E + Q Sbjct 353 ILQFAQNQSVVFPQITVRNPLKNGIVVYTDGSKT----GIGAYVANGKVVSKQYNENSPQ 408 Query 462 QLELRAIEEALKQGPQTMNLVTDSRYAFEFLLRNWDEEVIK------NPIQARIMEIAHK 515 +E + E LK + +N+V+DS Y + VIK N Q + + + Sbjct 409 VVECLVVLEVLKTFLKPLNIVSDSYYVVNAVNLLEVAGVIKPSSRVANIFQQIQLVLLSR 468 Query 516 KDRIGVHWVPGHKGIP 531 + + + V H G+P Sbjct 469 RSPVYITHVRAHSGLP 484 >RecName: Full=Pro-Pol polyprotein; AltName: Full=Pr125Pol; Contains: RecName: Full=Protease/Reverse transcriptase/ribonuclease H; AltName: Full=p87Pro-RT-RNaseH; Contains: RecName: Full=Protease/Reverse transcriptase; AltName: Full=p65Pro-RT; Contains: RecName: Full=Ribonuclease H; Short=RNase H; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=p42In [Macaque simian foamy virus] Sequence ID: P23074.3 Length: 1149 Range 1: 149 to 363 Score:80.9 bits(198), Expect:8e-16, Method:Compositional matrix adjust., Identities:68/234(29%), Positives:120/234(51%), Gaps:28/234(11%) Query 4 KVKLKEGCTGPHVP----QWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIK 59 ++K TG P Q+P+ + + +ID L+++G L + + T NTP++ + Sbjct 149 RIKPHNIATGTLAPRPQKQYPINPKAKPSIQIVIDDLLKQGVLIQQ--NSTMNTPVYPVP 206 Query 60 KKSGKWRMLIDFRELNKQTEDLTEAQLGLPHPGG----LQKKKHVTILDIGDAYFTIPLY 115 K GKWRM++D+RE+NK T L AQ H G + + K+ T LD+ + ++ P+ Sbjct 207 KPDGKWRMVLDYREVNK-TIPLIAAQNQ--HSAGILSSIYRGKYKTTLDLTNGFWAHPIT 263 Query 116 EPYREYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFG 175 T FT K+Y W LPQG+ SP++ FT + D +++ P +Q Sbjct 264 PESYWLTAFTWQG-------KQYCWTRLPQGFLNSPAL--FTADVV--DLLKEIPNVQ-- 310 Query 176 IYMDDIYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKG-YPAKWLGFEL 228 Y+DDIYI D + ++H E ++ + + + G+ + +K + ++LGF + Sbjct 311 AYVDDIYISHD-DPQEHLEQLEKIFSILLNAGYVVSLKKSEIAQREVEFLGFNI 363 >RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Cas-Br-E murine leukemia virus] Sequence ID: P08361.2 Length: 1733 Range 1: 707 to 930 Score:81.3 bits(199), Expect:8e-16, Method:Compositional matrix adjust., Identities:63/231(27%), Positives:113/231(48%), Gaps:14/231(6%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 + LK T + Q+P+++E G+ I +L+++G L W NTP+ +KK + Sbjct 707 IPLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPW--NTPLLPVKKPGTN 764 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHP----GGLQKKKH-VTILDIGDAYFTIPLYEPY 118 +R + D RE+NK+ ED+ +P+P GL T+LD+ DA+F + L+ Sbjct 765 DYRPVQDLREVNKRVEDIHPT---VPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTS 821 Query 119 REYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYM 178 + F P +G + W LPQG+K SP+++ + L + QHP++ Y+ Sbjct 822 QPLFAFEWRDPE-MGISGQLTWTRLPQGFKNSPTLFDEALHRDLAGFRIQHPDLILLQYV 880 Query 179 DDIYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYP-AKWLGFEL 228 DD+ + + E+ ++ + L + G+ +K Q K+LG+ L Sbjct 881 DDLLLAATSEL-DCQQGTRALLQTLGDLGYRASAKKAQICQKQVKYLGYLL 930 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Radiation murine leukemia virus] Sequence ID: P11227.2 Length: 1734 Range 1: 708 to 907 Score:79.7 bits(195), Expect:2e-15, Method:Compositional matrix adjust., Identities:57/206(28%), Positives:103/206(50%), Gaps:15/206(7%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKK-SG 63 + LK T + Q+P+++E G+ I +L+++G L W NTP+ +KK + Sbjct 708 IPLKATSTPVSIKQYPMSQEAKLGIKPHIQRLLDQGILVPCQSPW--NTPLLPVKKPGTN 765 Query 64 KWRMLIDFRELNKQTEDLTEAQLGLPHPGGL-----QKKKHVTILDIGDAYFTIPLYEPY 118 +R + RE+NK+ ED+ +P+P L + T+LD+ DA+F + L+ Sbjct 766 DYRPVQGLREVNKRVEDIHPT---VPNPYNLLSGLPTSHRWYTVLDLKDAFFCLRLHPTS 822 Query 119 REYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYM 178 + P +G + W LPQG+K SP+++ + L D+ QHP++ Y+ Sbjct 823 QPLFASEWRDPG-MGISGQLTWTRLPQGFKNSPTLFDEALHRGLADFRIQHPDLILLQYV 881 Query 179 DDIYIGSDLEI---KKHREIVKDLAN 201 DD+ + + E+ + R ++K L N Sbjct 882 DDLLLAATSELDCQQGTRALLKTLGN 907 >RecName: Full=Pro-Pol polyprotein; AltName: Full=Pr125Pol; Contains: RecName: Full=Protease/Reverse transcriptase/ribonuclease H; AltName: Full=p87Pro-RT-RNaseH; Contains: RecName: Full=Protease/Reverse transcriptase; AltName: Full=p65Pro-RT; Contains: RecName: Full=Ribonuclease H; Short=RNase H; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=p42In [Simian foamy virus (TYPE 3 / STRAIN LK3)] Sequence ID: P27401.2 Length: 1143 Range 1: 167 to 363 Score:79.7 bits(195), Expect:2e-15, Method:Compositional matrix adjust., Identities:61/216(28%), Positives:115/216(53%), Gaps:24/216(11%) Query 18 QWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRELNKQ 77 Q+P+ + + +I+ L+++G L + + NTP++ + K GKWRM++D+RE+NK Sbjct 167 QYPINPKAKASIQTVINDLLKQGVLIQQ--NSIMNTPVYPVPKPDGKWRMVLDYREVNK- 223 Query 78 TEDLTEAQLGLPHPGGLQ----KKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLG 133 T L AQ H G+ + K+ T LD+ + ++ + T FT L Sbjct 224 TIPLIAAQNQ--HSAGILSSIFRGKYKTTLDLSNGFWAHSITPESYWLTAFTWLG----- 276 Query 134 PCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHR 193 ++Y W LPQG+ SP++ FT + D +++ P +Q +Y+DDIYI D + ++H Sbjct 277 --QQYCWTRLPQGFLNSPAL--FTADVV--DLLKEVPNVQ--VYVDDIYISHD-DPREHL 327 Query 194 EIVKDLANYIAQYGFTLPEEKRQKG-YPAKWLGFEL 228 E ++ + + + G+ + +K + + ++LGF + Sbjct 328 EQLEKVFSLLLNAGYVVSLKKSEIAQHEVEFLGFNI 363 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Short=PR; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=p80; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=p46 [Woolly monkey sarcoma virus] Sequence ID: P03359.2 Length: 1687 Range 1: 685 to 899 Score:77.4 bits(189), Expect:1e-14, Method:Compositional matrix adjust., Identities:56/222(25%), Positives:109/222(49%), Gaps:13/222(5%) Query 1 PITKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKK 60 P V+L+ G + V Q+P+++E +G+ I + ++ G L W NTP+ +KK Sbjct 685 PPVVVELRSGASPVAVRQYPMSKEAREGIRPHIQRFLDLGVLVPCQSPW--NTPLLPVKK 742 Query 61 K-SGKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKK---KHV--TILDIGDAYFTIPL 114 + +R + D RE+NK+ +D+ +P+P L H ++LD+ DA+F + L Sbjct 743 PGTNDYRPVQDLREINKRVQDIHPT---VPNPYNLLSSLPPSHTWYSVLDLKDAFFCLKL 799 Query 115 YEPYREYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQF 174 + + F P G + W LPQG+K SP+++ + L + +P++ Sbjct 800 HPNSQPLFAFEWRDPEK-GNTGQLTWTRLPQGFKNSPTLFDEALHRDLAPFRALNPQVVL 858 Query 175 GIYMDDIYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQ 216 Y+DD+ + + + +E + L +++ G+ + +K Q Sbjct 859 LQYVDDLLVAAP-TYRDCKEGTQKLLQELSKLGYRVSAKKAQ 899 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Feline leukemia virus] Sequence ID: P10273.2 Length: 1712 Range 1: 676 to 856 Score:76.3 bits(186), Expect:3e-14, Method:Compositional matrix adjust., Identities:52/187(28%), Positives:95/187(50%), Gaps:12/187(6%) Query 5 VKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGK 64 ++LK T + Q+P+ E +G+ I +++++G L W NTP+ +KK + Sbjct 676 IQLKATATPISIRQYPMPHEAYQGIKPHIRRMLDQGILKPCQSPW--NTPLLPVKKPGTE 733 Query 65 -WRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKK---KH--VTILDIGDAYFTIPLYEPY 118 +R + D RE+NK+ ED+ +P+P L H T+LD+ DA+F + L+ Sbjct 734 DYRPVQDLREVNKRVEDIHPT---VPNPYNLLSTLPPSHPWYTVLDLKDAFFCLRLHSES 790 Query 119 REYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYM 178 + F P +G + W LPQG+K SP+++ + L D+ ++P + Y+ Sbjct 791 QLLFAFEWRDPE-IGLSGQLTWTRLPQGFKNSPTLFDEALHSDLADFRVRYPALVLLQYV 849 Query 179 DDIYIGS 185 DD+ + + Sbjct 850 DDLLLAA 856 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Fowl aviadenovirus 8] Sequence ID: Q9YYS0.1 Length: 163 Range 1: 24 to 153 Score:70.5 bits(171), Expect:3e-14, Method:Composition-based stats., Identities:43/130(33%), Positives:64/130(49%), Gaps:3/130(2%) Query 551 GILPKREED--AGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAKGVF 608 + P+R AGYDL +V + P IP +L + + IA +S +A K Sbjct 24 AVTPQRATSGAAGYDLCSSADVVVPPKSRSLIPTDLSFQFPRGVYGRIAPRSGLAVKFFI 83 Query 609 TQG-GIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERG 667 G G+IDS Y+G + V+++N + + +G + AQLIL LE +T RG Sbjct 84 DVGAGVIDSDYRGIVSVLLFNFSDHNFNVRRGDRIAQLILERHLTPDLEERSGLDETARG 143 Query 668 EKGFGSTGMY 677 GFGSTG + Sbjct 144 AAGFGSTGGF 153 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr125Pol; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease/Reverse transcriptase/ribonuclease H; AltName: Full=p87; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=p42 [Koala retrovirus] Sequence ID: Q9TTC1.2 Length: 1687 Range 1: 685 to 899 Score:75.9 bits(185), Expect:4e-14, Method:Compositional matrix adjust., Identities:56/222(25%), Positives:108/222(48%), Gaps:13/222(5%) Query 1 PITKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKK 60 P V+LK + V Q+P+++E +G+ I + ++ G L W NTP+ +KK Sbjct 685 PPVVVELKSDASPVAVRQYPMSKEAREGIRPHIQRFLDLGILVPCQSPW--NTPLLPVKK 742 Query 61 K-SGKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKK---KHV--TILDIGDAYFTIPL 114 + +R + D RE+NK+ +D+ +P+P L H ++LD+ DA+F + L Sbjct 743 PGTNDYRPVQDLREVNKRVQDIHPT---VPNPYNLLSSLPPSHTWYSVLDLKDAFFCLKL 799 Query 115 YEPYREYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQF 174 + + F P G + W LPQG+K SP+++ + L + +P++ Sbjct 800 HPNSQPLFAFEWRDPEK-GNTGQLTWTRLPQGFKNSPTLFDEALHRDLASFRALNPQVVM 858 Query 175 GIYMDDIYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQ 216 Y+DD+ + + + +E + L +++ G+ + +K Q Sbjct 859 LQYVDDLLVAAP-TYRDCKEGTRRLLQELSKLGYRVSAKKAQ 899 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Gibbon ape leukemia virus] Sequence ID: P21414.2 Length: 1686 Range 1: 684 to 868 Score:73.9 bits(180), Expect:1e-13, Method:Compositional matrix adjust., Identities:51/191(27%), Positives:94/191(49%), Gaps:12/191(6%) Query 1 PITKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKK 60 P V+L+ G + V Q+P+++E +G+ I K ++ G L W NTP+ +KK Sbjct 684 PPVVVELRSGASPVAVRQYPMSKEAREGIRPHIQKFLDLGVLVPCRSPW--NTPLLPVKK 741 Query 61 K-SGKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKH-----VTILDIGDAYFTIPL 114 + +R + D RE+NK+ +D+ +P+P L ++LD+ DA+F + L Sbjct 742 PGTNDYRPVQDLREINKRVQDIHPT---VPNPYNLLSSLPPSYTWYSVLDLKDAFFCLRL 798 Query 115 YEPYREYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQF 174 + + F P G + W LPQG+K SP+++ + L + +P++ Sbjct 799 HPNSQPLFAFEWKDPEK-GNTGQLTWTRLPQGFKNSPTLFDEALHRDLAPFRALNPQVVL 857 Query 175 GIYMDDIYIGS 185 Y+DD+ + + Sbjct 858 LQYVDDLLVAA 868 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Fowl aviadenovirus 1] Sequence ID: Q89662.1 Length: 178 Range 1: 42 to 159 Score:67.4 bits(163), Expect:5e-13, Method:Composition-based stats., Identities:39/118(33%), Positives:62/118(52%), Gaps:1/118(0%) Query 560 AGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAKGVFTQG-GIIDSGY 618 AGYDL ++ + +P +L + IA +S +AAK G G+ID Y Sbjct 42 AGYDLFSAYDIKVPARGRALVPTDLVFQFPPGCYGRIAPRSGLAAKFFIDVGAGVIDPDY 101 Query 619 QGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGSTGM 676 +G + V+++N ++ + I +G + AQLIL +L + +T+RG GFGSTGM Sbjct 102 RGNVSVVLFNFSESSFNIRRGDRVAQLILERIMVPELSELTQLGETDRGASGFGSTGM 159 >RecName: Full=Putative enzymatic polyprotein; Includes: RecName: Full=Protease; Short=PR; Includes: RecName: Full=Reverse transcriptase; Short=RT; Includes: RecName: Full=Ribonuclease H [Cassava vein mosaic virus] Sequence ID: Q89703.1 Length: 652 Range 1: 192 to 448 Score:65.5 bits(158), Expect:4e-11, Method:Compositional matrix adjust., Identities:78/281(28%), Positives:129/281(45%), Gaps:46/281(16%) Query 2 ITKVKLKEGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWT--CNTPIFCIK 59 + K++LK + P E L I+++++EG + + ++P F + Sbjct 192 LAKIELKNETDNIYKPPMLYQETDLPEFKMHIEEMIKEGFIEEKTNFEDKKYSSPAFIVN 251 Query 60 KKS----GKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKK----KHVTILDIGDAYFT 111 K S GK RM+ID+++LNK+ + + + +P+ L + ++ + D ++ Sbjct 252 KHSEQKRGKTRMVIDYKDLNKKAKVV---KYPIPNKDTLIHRSIQARYYSKFDCKSGFYH 308 Query 112 IPLYEPYREYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPE 171 I L E ++YT FT+ P Y WKVLP G+ SPS++Q M I P Sbjct 309 IKLEEDSKKYTAFTV-------PQGYYQWKVLPFGYHNSPSIFQQFMDRIF------RPY 355 Query 172 IQFGI-YMDDIYIGS------DLEIKKHREIVKDLAN--YIAQYGFTLPEEKRQKGYPAK 222 F I Y+DDI + S + I K R+I LAN I++ L +EK Sbjct 356 YDFIIVYIDDILVFSKTIEEHKIHIAKFRDIT--LANGLIISKKKTELCKEK------ID 407 Query 223 WLGFELHPQTWKFQKHTLPE-LTKGTITLNK--LQKLVGEL 260 +LG ++ + Q H + + L K T NK LQ ++G L Sbjct 408 FLGVQIEQGGIELQPHIINKILEKHTKIKNKTELQSILGLL 448 >RecName: Full=Gag-Pro polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein; Contains: RecName: Full=p12; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease 17 kDa; Contains: RecName: Full=Protease 13 kDa; Contains: RecName: Full=G-patch peptide [Jaagsiekte sheep retrovirus] Sequence ID: P31625.3 Length: 866 Range 1: 601 to 718 Score:65.1 bits(157), Expect:6e-11, Method:Compositional matrix adjust., Identities:39/124(31%), Positives:66/124(53%), Gaps:7/124(5%) Query 560 AGYDLICPEEVTIEPGQ-VKCIPIELRLNLKKSQWAMIATKSSMAAKGVFTQGGIIDSGY 618 AG DL + P V+ + + L ++ +SS + KG+ G+IDS Y Sbjct 601 AGLDLCATSYTVLTPEMGVQTLATGVFGPLPPGTVGLLLGRSSASLKGILIHPGVIDSDY 660 Query 619 QGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGSTGMYW 678 G+I+++ NKI +VI G++ AQL+L+ L G++ +R +KGFGS+ YW Sbjct 661 TGEIKILASAPNKI-IVINAGQRIAQLLLV-----PLVIQGKTINRDRQDKGFGSSDAYW 714 Query 679 IENI 682 ++N+ Sbjct 715 VQNV 718 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Swinepox virus (STRAIN KASZA)] Sequence ID: P32208.1 Length: 142 Range 1: 14 to 142 Score:58.2 bits(139), Expect:3e-10, Method:Composition-based stats., Identities:38/129(29%), Positives:63/129(48%), Gaps:3/129(2%) Query 551 GILPKREED--AGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAK-GV 607 I+P R AGYDL T++P + ++ L + + I+ +S ++ + Sbjct 14 AIIPNRSMSGSAGYDLYSAYSYTVKPYNRILVRTDICLMIPDKCYGRISPRSGLSLNYNI 73 Query 608 FTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERG 667 GG+IDS Y+G+I ++ N+ I G + AQ+I ++ +E TERG Sbjct 74 DIGGGVIDSDYRGEIGIVFINNGCSDFNIKVGDRIAQIIFERVEYPIMEEVKCLEDTERG 133 Query 668 EKGFGSTGM 676 GFGS+GM Sbjct 134 NSGFGSSGM 142 >RecName: Full=Gag-Pro polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp24; Contains: RecName: Full=Phosphorylated protein pp18; Contains: RecName: Full=p12; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease 17 kDa; Contains: RecName: Full=Protease 13 kDa; Contains: RecName: Full=G-patch peptide [Simian retrovirus 1] Sequence ID: P04024.2 Length: 912 Range 1: 647 to 778 Score:62.4 bits(150), Expect:5e-10, Method:Compositional matrix adjust., Identities:40/137(29%), Positives:69/137(50%), Gaps:6/137(4%) Query 560 AGYDLICPEEVTIEPGQ-VKCIPIELRLNLKKSQWAMIATKSSMAAKGVFTQGGIIDSGY 618 AG DL + P + + + L + + +I +SS+ KG+ G+ID+ Y Sbjct 647 AGLDLSSTSHTVLTPEMGPQALSTGIYGPLPPNTFGLILGRSSITIKGLQVYPGVIDNDY 706 Query 619 QGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGSTGMYW 678 G+I+++ N I V +PQG + AQLIL+ +E + ++ RG+ FGS+ +YW Sbjct 707 TGEIKIMAKAVNNI-VTVPQGNRIAQLILLP----LIETDNKVQQPYRGQGSFGSSDIYW 761 Query 679 IENIPLAEEDHTKWHQD 695 ++ I + T W D Sbjct 762 VQPITCQKPSLTLWLDD 778 >RecName: Full=Enzymatic polyprotein; Includes: RecName: Full=Aspartic protease; Includes: RecName: Full=Endonuclease; Includes: RecName: Full=Reverse transcriptase [Cauliflower mosaic virus (STRAIN STRASBOURG)] Sequence ID: P03554.1 Length: 679 Range 1: 260 to 496 Score:62.0 bits(149), Expect:5e-10, Method:Compositional matrix adjust., Identities:70/256(27%), Positives:114/256(44%), Gaps:28/256(10%) Query 23 EEKLKGLTEIID-KLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRELNKQTEDL 81 EE K + E++D K+++ K P + N +K+ GK RM+++++ +NK T Sbjct 260 EEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEA---EKRRGKKRMVVNYKAMNKAT--- 313 Query 82 TEAQLGLPHPGGL----QKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPCKR 137 LP+ L + KK + D ++ + L + R T FT P Sbjct 314 VGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTC-------PQGH 366 Query 138 YYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHREIVK 197 Y W V+P G K +PS++Q M E + + +Y+DDI + S+ E + H V Sbjct 367 YEWNVVPFGLKQAPSIFQRHMDEAFRVFRK-----FCCVYVDDILVFSNNE-EDHLLHVA 420 Query 198 DLANYIAQYGFTLPEEKRQKGYPA-KWLGFELHPQTWKFQKHTLPELTKGTITL---NKL 253 + Q+G L ++K Q +LG E+ T K Q H L + K TL +L Sbjct 421 MILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQL 480 Query 254 QKLVGELVWRQSIIGK 269 Q+ +G L + I K Sbjct 481 QRFLGILTYASDYIPK 496 >RecName: Full=Enzymatic polyprotein; Includes: RecName: Full=Aspartic protease; Includes: RecName: Full=Endonuclease; Includes: RecName: Full=Reverse transcriptase [Cauliflower mosaic virus (STRAIN BBC)] Sequence ID: Q02964.1 Length: 679 Range 1: 260 to 496 Score:62.0 bits(149), Expect:5e-10, Method:Compositional matrix adjust., Identities:71/256(28%), Positives:117/256(45%), Gaps:28/256(10%) Query 23 EEKLKGLTEIID-KLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRELNKQTEDL 81 EE K + E++D K+++ K P + N +K+ GK RM+++++ +NK T + Sbjct 260 EEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEA---EKRRGKKRMVVNYKAMNKAT--I 314 Query 82 TEAQLGLPHPGGL----QKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPCKR 137 +A LP+ L + KK + D ++ + L + R T FT P Sbjct 315 GDA-YNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTC-------PQGH 366 Query 138 YYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHREIVK 197 Y W V+P G K +PS++Q M E + + +Y+DDI + S+ E + H V Sbjct 367 YEWNVVPFGLKQAPSIFQRHMDEAFRVFRK-----FCCVYVDDILVFSNNE-EDHLLHVA 420 Query 198 DLANYIAQYGFTLPEEKRQKGYPA-KWLGFELHPQTWKFQKHTLPELTKGTITL---NKL 253 + Q+G L ++K Q +LG E+ T K Q H L + K TL +L Sbjct 421 MILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQL 480 Query 254 QKLVGELVWRQSIIGK 269 Q+ +G L + I K Sbjct 481 QRFLGILTYASDYIPK 496 >RecName: Full=Enzymatic polyprotein; Includes: RecName: Full=Aspartic protease; Includes: RecName: Full=Endonuclease; Includes: RecName: Full=Reverse transcriptase [Cauliflower mosaic virus (STRAIN CM-1841)] Sequence ID: P03555.1 Length: 679 Range 1: 260 to 496 Score:61.6 bits(148), Expect:6e-10, Method:Compositional matrix adjust., Identities:71/256(28%), Positives:117/256(45%), Gaps:28/256(10%) Query 23 EEKLKGLTEIID-KLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRELNKQTEDL 81 EE K + E++D K+++ K P + N +K+ GK RM+++++ +NK T + Sbjct 260 EEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEA---EKRRGKKRMVVNYKAMNKAT--I 314 Query 82 TEAQLGLPHPGGL----QKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPCKR 137 +A LP+ L + KK + D ++ + L + R T FT P Sbjct 315 GDA-YNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTC-------PQGH 366 Query 138 YYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHREIVK 197 Y W V+P G K +PS++Q M E + + +Y+DDI + S+ E + H V Sbjct 367 YEWNVVPFGLKQAPSIFQRHMDEAFRVFRK-----FCCVYVDDILVFSNNE-EDHLLHVA 420 Query 198 DLANYIAQYGFTLPEEKRQKGYPA-KWLGFELHPQTWKFQKHTLPELTKGTITL---NKL 253 + Q+G L ++K Q +LG E+ T K Q H L + K TL +L Sbjct 421 MILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQL 480 Query 254 QKLVGELVWRQSIIGK 269 Q+ +G L + I K Sbjct 481 QRFLGILTYASDYIPK 496 >RecName: Full=Gag-Pro polyprotein; AltName: Full=Pr95; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp24; Contains: RecName: Full=Phosphorylated protein pp18; Contains: RecName: Full=p12; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease 17 kDa; Contains: RecName: Full=Protease 13 kDa; Contains: RecName: Full=G-patch peptide [Mason-Pfizer monkey virus] Sequence ID: P07570.2 Length: 911 Range 1: 646 to 777 Score:60.1 bits(144), Expect:2e-09, Method:Compositional matrix adjust., Identities:39/137(28%), Positives:68/137(49%), Gaps:6/137(4%) Query 560 AGYDLICPEEVTIEPGQ-VKCIPIELRLNLKKSQWAMIATKSSMAAKGVFTQGGIIDSGY 618 AG DL + P + + + L + + +I +SS+ KG+ G+ID+ Y Sbjct 646 AGLDLCSTSHTVLTPEMGPQALSTGIYGPLPPNTFGLILGRSSITMKGLQVYPGVIDNDY 705 Query 619 QGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGSTGMYW 678 G+I+++ N I V + QG + AQLIL+ +E + ++ RG+ FGS+ +YW Sbjct 706 TGEIKIMAKAVNNI-VTVSQGNRIAQLILLP----LIETDNKVQQPYRGQGSFGSSDIYW 760 Query 679 IENIPLAEEDHTKWHQD 695 ++ I + T W D Sbjct 761 VQPITCQKPSLTLWLDD 777 >RecName: Full=Putative deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase [Frog virus 3 (isolate Goorha)] Sequence ID: Q6GZR2.1 Length: 164 Range 1: 11 to 143 Score:55.8 bits(133), Expect:3e-09, Method:Composition-based stats., Identities:34/133(26%), Positives:63/133(47%), Gaps:1/133(0%) Query 545 LAKEGEGILPKREEDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAA 604 L++ G++ AGYDL V + + +L + + + +A +S +A Sbjct 11 LSEHASGLIRGSAGAAGYDLAAAHPVVVPSFGRALVKTDLAVKMPPGLYGRVAPRSGLAL 70 Query 605 KGVFTQG-GIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRK 663 K G G++D Y+G + VI++N + +G + AQL+L + + Sbjct 71 KKFIDVGAGVVDPDYRGNLGVILFNFGCDPFRVKRGDRIAQLVLERYESPPILEVDSLDS 130 Query 664 TERGEKGFGSTGM 676 T+RG+ G+GSTG+ Sbjct 131 TDRGDAGYGSTGV 143 >RecName: Full=Enzymatic polyprotein; Includes: RecName: Full=Aspartic protease; Includes: RecName: Full=Endonuclease; Includes: RecName: Full=Reverse transcriptase [Cauliflower mosaic virus (STRAIN D/H)] Sequence ID: P03556.1 Length: 674 Range 1: 255 to 491 Score:58.9 bits(141), Expect:4e-09, Method:Compositional matrix adjust., Identities:69/256(27%), Positives:113/256(44%), Gaps:28/256(10%) Query 23 EEKLKGLTEIID-KLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRELNKQTEDL 81 EE K + E++D K+++ K P + N +K+ GK RM+++++ +NK T Sbjct 255 EEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEA---EKRRGKKRMVVNYKAMNKAT--- 308 Query 82 TEAQLGLPHPGGL----QKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPCKR 137 P+ L + KK + D ++ + L + R T FT P Sbjct 309 VGDAYNPPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTC-------PQGH 361 Query 138 YYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHREIVK 197 Y W V+P G K +PS++Q M E + + +Y+DDI + S+ E + H V Sbjct 362 YEWNVVPFGLKQAPSIFQRHMDEAFRVFRK-----FCCVYVDDILVFSNNE-EDHLLHVA 415 Query 198 DLANYIAQYGFTLPEEKRQKGYPA-KWLGFELHPQTWKFQKHTLPELTKGTITL---NKL 253 + Q+G L ++K Q +LG E+ T K Q H L + K TL +L Sbjct 416 MILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQL 475 Query 254 QKLVGELVWRQSIIGK 269 Q+ +G L + I K Sbjct 476 QRFLGILTYASDYIPK 491 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Paramecium bursaria Chlorella virus 1] Sequence ID: O41033.1 Length: 141 Range 1: 21 to 112 Score:54.7 bits(130), Expect:6e-09, Method:Composition-based stats., Identities:29/92(32%), Positives:51/92(55%), Gaps:1/92(1%) Query 557 EEDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAK-GVFTQGGIID 615 E AGYD+ E+V + + + + + + IA +S +A K G+ G+ID Sbjct 21 EGAAGYDISSVEDVVVPAMGRIAVSTGISIRVPNGTYGRIAPRSGLAYKYGIDVLAGVID 80 Query 616 SGYQGQIQVIMYNSNKIAVVIPQGRKFAQLIL 647 S Y+G+++ I+YN+ + +I +G + AQLIL Sbjct 81 SDYRGELKAILYNTTERDYIIKKGDRIAQLIL 112 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Yaba monkey tumor virus strain VR587] Sequence ID: Q6TUZ4.1 Length: 143 Range 1: 1 to 143 Score:54.3 bits(129), Expect:8e-09, Method:Composition-based stats., Identities:38/145(26%), Positives:73/145(50%), Gaps:6/145(4%) Query 536 IDKYISEIFLAKEGE-GILPKR--EEDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQ 592 + K+I +++ K E +P R ++ AGYDL + + P + ++ L++ Sbjct 1 MSKFI--VYVKKSSEFATIPTRSSKKSAGYDLYSAYDYLVRPKSRVLVKTDICLSIPDEC 58 Query 593 WAMIATKSSMAA-KGVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKK 651 + IA++S ++ + GG+ID Y+G I VI N+ I +G + AQ++ Sbjct 59 YGRIASRSGLSLNNSIDIGGGVIDGDYRGVIGVIFINNGNSPHYIKRGDRIAQIVFERLA 118 Query 652 HGKLEPWGESRKTERGEKGFGSTGM 676 + +++ T RG+ GFGS+G+ Sbjct 119 NVEIKEISNLDCTCRGDCGFGSSGI 143 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Psittacid herpesvirus 1 Amazon parrot/1997] Sequence ID: Q6UDM0.1 Length: 414 Range 1: 283 to 414 Score:57.4 bits(137), Expect:8e-09, Method:Compositional matrix adjust., Identities:40/135(30%), Positives:68/135(50%), Gaps:16/135(11%) Query 555 KREEDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAKGVFTQG-GI 613 K EDAGYD+ PE T+ PG + + +L++ K + A + +SSM KGV + + Sbjct 283 KEAEDAGYDIRAPENCTLPPGGSVRVILRQKLHMGKGRAAFVMGRSSMNLKGVLVEPERV 342 Query 614 IDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKK---HGKLE--PWG-------ES 661 +D + + + N A + + AQL+ ++ K G ++ PW E Sbjct 343 VDDEW---VSFNITNIRDAAAFFRKNDRIAQLVALEDKLELMGGVDALPWRVVQSVQEEK 399 Query 662 RKTERGEKGFGSTGM 676 + + RG+KGFGS+G+ Sbjct 400 KNSSRGDKGFGSSGV 414 >RecName: Full=Enzymatic polyprotein; Includes: RecName: Full=Aspartic protease; Includes: RecName: Full=Endonuclease; Includes: RecName: Full=Reverse transcriptase [Figwort mosaic virus (STRAIN DXS)] Sequence ID: P09523.1 Length: 666 Range 1: 254 to 489 Score:57.8 bits(138), Expect:1e-08, Method:Compositional matrix adjust., Identities:65/255(25%), Positives:115/255(45%), Gaps:32/255(12%) Query 28 GLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIK----KKSGKWRMLIDFRELNKQT----E 79 G + I +L++ G + P +P F ++ ++ GK RM+++++ +N+ T Sbjct 254 GFAKQIKELLDLGLI--IPSKSQHMSPAFLVENEAERRRGKKRMVVNYKAINQATIGDSH 311 Query 80 DLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPCKRYY 139 +L Q L L+ K + D ++ + L E ++ T FT P + Sbjct 312 NLPNMQELLTL---LRGKSIFSSFDCKSGFWQVVLDEESQKLTAFTC-------PQGHFQ 361 Query 140 WKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHREIVKDL 199 WKV+P G K +PS++Q MQ L + +Y+DDI + S+ E+ H V + Sbjct 362 WKVVPFGLKQAPSIFQRHMQTALNG-----ADKFCMVYVDDIIVFSNSEL-DHYNHVYAV 415 Query 200 ANYIAQYGFTLPEEKRQKGYPAK--WLGFELHPQTWKFQKHTLPELTKGTITL---NKLQ 254 + +YG L +K+ + K +LG E+ T Q H L + K L LQ Sbjct 416 LKIVEKYGIIL-SKKKANLFKEKINFLGLEIDKGTHCPQNHILENIHKFPDRLEDKKHLQ 474 Query 255 KLVGELVWRQSIIGK 269 + +G L + ++ I K Sbjct 475 RFLGVLTYAETYIPK 489 >RecName: Full=Enzymatic polyprotein; Includes: RecName: Full=Aspartic protease; Includes: RecName: Full=Endonuclease; Includes: RecName: Full=Reverse transcriptase [Cauliflower mosaic virus (STRAIN NY8153)] Sequence ID: Q00962.1 Length: 680 Range 1: 261 to 501 Score:57.0 bits(136), Expect:2e-08, Method:Compositional matrix adjust., Identities:69/264(26%), Positives:115/264(43%), Gaps:32/264(12%) Query 23 EEKLKGLTEIID-KLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRELNKQTEDL 81 EE K + E++D K+++ K P + N + G RM+++++ +NK T Sbjct 261 EEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEA---ENGRGNKRMVVNYKAMNKAT--- 314 Query 82 TEAQLGLPHPGGL----QKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPCKR 137 LP+ L + KK + D ++ + L + R T FT P Sbjct 315 VGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTC-------PQGH 367 Query 138 YYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHREIVK 197 Y W V+P G K +PS++Q M E + + +Y+DDI + S+ E + H V Sbjct 368 YEWNVVPFGLKQAPSIFQRHMDEAFRVFRK-----FCCVYVDDIVVFSNNE-EDHLLHVA 421 Query 198 DLANYIAQYGFTLPEEKRQKGYPA-KWLGFELHPQTWKFQKHTLPELTKGTITL---NKL 253 + Q+G L ++K Q +LG E+ T K Q H L + K TL +L Sbjct 422 MILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQL 481 Query 254 QKLVGELVWRQSIIGKSIPNILKL 277 Q+ +G L + IPN+ ++ Sbjct 482 QRFLGILTYASDY----IPNLAQM 501 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Suid herpesvirus 1 strain Kaplan] Sequence ID: Q90030.1 Length: 268 Range 1: 124 to 268 Score:54.3 bits(129), Expect:4e-08, Method:Compositional matrix adjust., Identities:38/150(25%), Positives:69/150(46%), Gaps:28/150(18%) Query 550 EGILPKREEDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAKGVFT 609 E PKR+EDAGYD+ CP E+ + PG + + + + + WA + +SS+ +G+ Sbjct 124 EVFAPKRDEDAGYDIPCPRELVLPPGGAETVTLPVHRTDGR-HWAYVFGRSSLNLRGIV- 181 Query 610 QGGIIDSGYQ-GQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHG---KLEPWGESRK-- 663 + + ++ G + + N V + G++ AQL+L + G P+ + + Sbjct 182 ---VFPTPWESGPCRFRIQNRGAHPVTLESGQRVAQLVLTREPLGWITGRSPFPATPRAP 238 Query 664 -----------------TERGEKGFGSTGM 676 + RG +GFGSTG+ Sbjct 239 MQHRPAWLFARDFVAPSSARGARGFGSTGL 268 >RecName: Full=Polyprotein P3; Includes: RecName: Full=Putative movement protein; Short=MP; Includes: RecName: Full=Capsid protein; AltName: Full=Coat protein; Short=CP; Includes: RecName: Full=Protease; Short=PR; Includes: RecName: Full=Reverse transcriptase; Short=RT; Includes: RecName: Full=Ribonuclease H [Commelina yellow mottle virus] Sequence ID: P19199.2 Length: 1886 Range 1: 1457 to 1630 Score:53.9 bits(128), Expect:2e-07, Method:Compositional matrix adjust., Identities:48/190(25%), Positives:84/190(44%), Gaps:21/190(11%) Query 59 KKKSGKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKK----KHVTILDIGDAYFTIPL 114 K+K GK RM+ +++ LN+ TE Q LP + K K + D+ ++ + + Sbjct 1457 KEKKGKERMVFNYKLLNENTES---DQYSLPGINTIISKVGRSKIYSKFDLKSGFWQVAM 1513 Query 115 YEPYREYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQF 174 E +T F L K Y W V+P G K +P+++Q M + + E Sbjct 1514 EEESVPWTAF-------LAGNKLYEWLVMPFGLKNAPAIFQRKMDNVF-----KGTEKFI 1561 Query 175 GIYMDDIYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYP-AKWLGFELHPQTW 233 +Y+DDI + S+ ++H + + + + G L K + G P +LG L Sbjct 1562 AVYIDDILVFSET-AEQHSQHLYTMLQLCKENGLILSPTKMKIGTPEIDFLGASLGCTKI 1620 Query 234 KFQKHTLPEL 243 K Q H + ++ Sbjct 1621 KLQPHIISKI 1630 >RecName: Full=Gag-Pro polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp21; Contains: RecName: Full=Protein p3; Contains: RecName: Full=Protein p8; Contains: RecName: Full=Protein n; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease [Mouse mammary tumor virus (STRAIN BR6)] Sequence ID: P10271.2 Length: 860 Range 1: 631 to 750 Score:53.1 bits(126), Expect:3e-07, Method:Compositional matrix adjust., Identities:43/126(34%), Positives:70/126(55%), Gaps:9/126(7%) Query 560 AGYDLICPEEV--TIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAKGVFTQGGIIDSG 617 AG DL +++ ++E G V +P ++ L + +I +SS KG+ G+IDS Sbjct 631 AGLDLSSQKDLILSLEDG-VSLVPTLVKGTLPEGTTGLIIGRSSNYKKGLEVLPGVIDSD 689 Query 618 YQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGSTG-M 676 +QG+I+V M + K AV+I +G + AQL+L+ K ERG +GFGST + Sbjct 690 FQGEIKV-MVKAAKNAVIIHKGERIAQLLLLPYLKLPN----PVIKEERGSEGFGSTSHV 744 Query 677 YWIENI 682 +W++ I Sbjct 745 HWVQEI 750 >RecName: Full=Gag-Pro polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp21; Contains: RecName: Full=Protein p3; Contains: RecName: Full=Protein p8; Contains: RecName: Full=Protein n; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease [Mouse mammary tumor virus (STRAIN C3H)] Sequence ID: Q9IZT2.1 Length: 860 Range 1: 631 to 750 Score:53.1 bits(126), Expect:3e-07, Method:Compositional matrix adjust., Identities:43/126(34%), Positives:70/126(55%), Gaps:9/126(7%) Query 560 AGYDLICPEEV--TIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAKGVFTQGGIIDSG 617 AG DL +++ ++E G V +P ++ L + +I +SS KG+ G+IDS Sbjct 631 AGLDLSSQKDLILSLEDG-VSLVPTLVKGTLPEGTTGLIIGRSSNYKKGLEVLPGVIDSD 689 Query 618 YQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWGESRKTERGEKGFGSTG-M 676 +QG+I+V M + K AV+I +G + AQL+L+ K ERG +GFGST + Sbjct 690 FQGEIKV-MVKAAKNAVIIHKGERIAQLLLLPYLKLPNPII----KEERGSEGFGSTSHV 744 Query 677 YWIENI 682 +W++ I Sbjct 745 HWVQEI 750 >RecName: Full=Gag-Pro polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp24; Contains: RecName: Full=Phosphorylated protein pp18; Contains: RecName: Full=p12; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease 17 kDa; Contains: RecName: Full=Protease 13 kDa; Contains: RecName: Full=G-patch peptide [Simian retrovirus 2] Sequence ID: P51518.2 Length: 908 Range 1: 643 to 761 Score:52.4 bits(124), Expect:5e-07, Method:Compositional matrix adjust., Identities:34/127(27%), Positives:61/127(48%), Gaps:12/127(9%) Query 560 AGYDLICPEEVTIEPGQ-VKCIPIELRLNLKKSQWAMIATKSSMAAKGVFTQGGIIDSGY 618 AG DL + P + + + L + + +I + S KG+ G+ID+ Y Sbjct 643 AGLDLCSTTHTVLTPEMGPQTLATGVYGPLPPNTFGLILGRGSTTVKGLQIYPGVIDNDY 702 Query 619 QGQIQVIMYNSNKIAVVIPQGRKFAQLILMD---KKHGKLEPWGESRKTERGEKGFGSTG 675 G+ +++ + I + IPQG + AQL+L+ H P+ RG+K FGS+ Sbjct 703 TGEFKIMARAISSI-ITIPQGERIAQLVLLPLLRTAHKIQHPY-------RGDKNFGSSD 754 Query 676 MYWIENI 682 ++W++ I Sbjct 755 IFWVQPI 761 >RecName: Full=Enzymatic polyprotein; Includes: RecName: Full=Aspartic protease; Includes: RecName: Full=Endonuclease; Includes: RecName: Full=Reverse transcriptase [Soybean chlorotic mottle virus] Sequence ID: P15629.2 Length: 692 Range 1: 210 to 398 Score:50.8 bits(120), Expect:2e-06, Method:Compositional matrix adjust., Identities:54/210(26%), Positives:99/210(47%), Gaps:34/210(16%) Query 20 PLTEEKLKGLTEIIDKLVEEGKLGKA-PPHWTCNTPIFCIKK----KSGKWRMLIDFREL 74 P T ++ E + L+++G + ++ PH + P F ++ K GK RM+I+++++ Sbjct 210 PYTIRDVQEFKEECEDLLKKGLIRESQSPH---SAPAFYVENHNEIKRGKRRMVINYKKM 266 Query 75 NKQTEDLTEAQLG----LPHPGGLQKKKHVTI----LDIGDAYFTIPLYEPYREYTCFTL 126 N EA +G LP + +K ++ LD Y+ + L+E + T F+ Sbjct 267 N-------EATIGDSYKLPRKDFILEKIKGSLWFSSLDAKSGYYQLRLHENTKPLTAFSC 319 Query 127 LSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSD 186 P K Y W VL G K +PS+YQ M + L+ +H + Y+DDI I + Sbjct 320 ------PPQKHYEWNVLSFGLKQAPSIYQRFMDQSLKGL--EHICLA---YIDDILIFTK 368 Query 187 LEIKKHREIVKDLANYIAQYGFTLPEEKRQ 216 ++H V+ + I + G + ++K + Sbjct 369 GSKEQHVNDVRIVLQRIKEKGIIISKKKSK 398 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Human alphaherpesvirus 1 strain 17] Sequence ID: P10234.1 Length: 371 Range 1: 206 to 371 Score:48.5 bits(114), Expect:5e-06, Method:Compositional matrix adjust., Identities:44/169(26%), Positives:68/169(40%), Gaps:42/169(24%) Query 547 KEGEGILPKREEDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAM--IATKSSMAA 604 +E LPKREEDAG+D++ VT+ + LR+ + A + +SS+ A Sbjct 206 REAIAFLPKREEDAGFDIVVRRPVTVPANGTTVVQPSLRMLHADAGPAACYVLGRSSLNA 265 Query 605 KGVFTQGGIIDSGYQGQI-QVIMYNSNKIAVVIPQGRKFAQLILM----------DKKHG 653 +G+ + G + ++YN + V + G K AQL++ D HG Sbjct 266 RGLLV---VPTRWLPGHVCAFVVYNLTGVPVTLEAGAKVAQLLVAGADALPWIPPDNFHG 322 Query 654 --------------KLEPW------------GESRKTERGEKGFGSTGM 676 EP E+ +ERG GFGSTG+ Sbjct 323 TKALRNYPRGVPDSTAEPRNPPLLVFTNEFDAEAPPSERGTGGFGSTGI 371 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Marek's disease herpesvirus type 1 strain MD5] Sequence ID: Q9E6M6.1 Length: 436 Range 1: 247 to 384 Score:45.1 bits(105), Expect:6e-05, Method:Compositional matrix adjust., Identities:42/142(30%), Positives:65/142(45%), Gaps:12/142(8%) Query 524 VPGHKGIPQNEE---IDKYISEIF--LAKEGEGILPKREEDAGYDLICPEEVTIEPGQVK 578 V G K P E+ + Y S F L E PKR EDA YD+ P ++ + Sbjct 247 VLGLKDFPTAEDETFVRFYTSGQFATLIPFFETFTPKRTEDAAYDIAAPGDIRLGALSST 306 Query 579 CIPIELR-LNLKKSQWAMIATKSSMAAKGVFTQGGIIDSGY--QGQIQVIMYNSNKIAVV 635 I I+ R + + S I +SSM +G+ II S + + + + N ++ V+ Sbjct 307 TIMIQQRYVCMDDSVIPCIFGRSSMNLRGLI----IIPSRWLPNSWLTITICNLTEMTVM 362 Query 636 IPQGRKFAQLILMDKKHGKLEP 657 I G + AQL+L+D + L P Sbjct 363 IRCGDRIAQLLLVDHESATLIP 384 >RecName: Full=Enzymatic polyprotein; Includes: RecName: Full=Aspartic protease; Includes: RecName: Full=Endonuclease; Includes: RecName: Full=Reverse transcriptase [Cestrum yellow leaf curling virus] Sequence ID: Q7TD08.1 Length: 643 Range 1: 230 to 373 Score:44.7 bits(104), Expect:1e-04, Method:Compositional matrix adjust., Identities:47/165(28%), Positives:73/165(44%), Gaps:29/165(17%) Query 36 LVEEGKLGKAPPHWTCNTPIFCIKK----KSGKWRMLIDFRELNKQTEDLTEAQLGLPHP 91 ++EE K PH + P F ++ K K RM+I+++ LNK T + A LP Sbjct 230 IIEESK----SPH---SAPAFYVENHNEIKRKKRRMVINYKALNKAT--IGNAH-KLPRI 279 Query 92 GGLQKKKH----VTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPCKRYYWKVLPQGW 147 + K + LD Y+ + L+ + T F+ P K Y W VLP G Sbjct 280 DSILTKVKGSNWFSTLDAKSGYWQLRLHPQSKPLTAFSC------PPQKHYQWNVLPFGL 333 Query 148 KLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKH 192 K +P +YQ M + LE E Y+DDI + ++ ++H Sbjct 334 KQAPGIYQNFMDKNLEGL-----ENFCLAYIDDILVFTNSSREEH 373 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Human herpesvirus 2 strain HG52] Sequence ID: P89469.1 Length: 369 Range 1: 205 to 304 Score:43.9 bits(102), Expect:1e-04, Method:Compositional matrix adjust., Identities:29/102(28%), Positives:47/102(46%), Gaps:4/102(3%) Query 548 EGEGILPKREEDAGYDLICPEEVTIEPGQVKCIPIELRL--NLKKSQWAMIATKSSMAAK 605 E LPKREEDAG+D++ VT+ I LR+ + + +SS+ A+ Sbjct 205 EAPAFLPKREEDAGFDILIHRAVTVPANGATVIQPSLRVLRAADGPEACYVLGRSSLNAR 264 Query 606 GVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLIL 647 G+ SG+ ++ N + V + G K AQL++ Sbjct 265 GLLVMPTRWPSGH--ACAFVVCNLTGVPVTLQAGSKVAQLLV 304 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Equine herpesvirus type 4 (strain 1942)] Sequence ID: Q00030.1 Length: 326 Range 1: 172 to 326 Score:43.9 bits(102), Expect:1e-04, Method:Compositional matrix adjust., Identities:43/159(27%), Positives:64/159(40%), Gaps:40/159(25%) Query 554 PKREEDAGYDLICPEEVTIEPGQVKCIPIELRLNLKKSQWAM---IATKSSMAAKGVFTQ 610 PKR+EDAGYD+ TIEP + +EL + S A+ I +SSM +G+ Sbjct 172 PKRDEDAGYDISAQTNATIEPDESYF--VELPIVFSSSNPAVTPCIFGRSSMNRRGLIVL 229 Query 611 GGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDKKHGKLEPWG----------- 659 +G ++ N NK V I +G++ AQL+L + L P Sbjct 230 PTRWVTGRTCCFFIL--NINKYPVYITKGQRVAQLVLTEDIDEALIPTNVNYNTPFPTYS 287 Query 660 ----------------------ESRKTERGEKGFGSTGM 676 ++ + R E GFGSTG+ Sbjct 288 PTGAVKHNPTPILWKFTEAFDHDAPSSARSEGGFGSTGL 326 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Human herpesvirus 8 strain GK18] Sequence ID: Q2HR78.1 Length: 295 Range 1: 37 to 105 Score:40.0 bits(92), Expect:0.002, Method:Compositional matrix adjust., Identities:24/74(32%), Positives:37/74(50%), Gaps:5/74(6%) Query 566 CPEEVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAKGVFTQGGIIDSGYQGQIQVI 625 CP + + P + +P + + A I T + K VF G+ID GY+G+IQVI Sbjct 37 CP--ILVRPHEPFIMPTGIHFT-RTPSCAFILTGET--DKDVFCHTGLIDGGYRGEIQVI 91 Query 626 MYNSNKIAVVIPQG 639 + N K V + +G Sbjct 92 LLNKRKYPVTLYRG 105 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Human herpesvirus 3 strain Oka vaccine] Sequence ID: Q4JQW7.1 Length: 396 Range 1: 230 to 383 Score:38.5 bits(88), Expect:0.007, Method:Compositional matrix adjust., Identities:43/156(28%), Positives:65/156(41%), Gaps:35/156(22%) Query 552 ILPKREEDAGYDLICPEEVTIEPGQV--KCIPIELRLNLKK-SQWAMIATKSSMAAKGVF 608 I PKR+EDAGYD+ P + ++ + +PI +L+ S A I +SS + G+ Sbjct 230 INPKRQEDAGYDICVPYNLYLKRNEFIKIVLPIIRDWDLQHPSINAYIFGRSSKSRSGII 289 Query 609 TQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDK------KHGKLE----PW 658 +G + V YN + I G + AQ++L+D KH L P+ Sbjct 290 VCPTAWPAGEHCKFYV--YNLTGDDIRIKTGDRLAQVLLIDHNTQIHLKHNVLSNIAFPY 347 Query 659 GESRK--------------------TERGEKGFGST 674 K +ERG +GFGST Sbjct 348 AIRGKCGIPGVQWYFTKTLDLIATPSERGTRGFGST 383 >RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=dUTP pyrophosphatase [Human herpesvirus 3 strain Dumas] Sequence ID: P09254.1 Length: 396 Range 1: 230 to 383 Score:38.5 bits(88), Expect:0.007, Method:Compositional matrix adjust., Identities:43/156(28%), Positives:65/156(41%), Gaps:35/156(22%) Query 552 ILPKREEDAGYDLICPEEVTIEPGQV--KCIPIELRLNLKK-SQWAMIATKSSMAAKGVF 608 I PKR+EDAGYD+ P + ++ + +PI +L+ S A I +SS + G+ Sbjct 230 INPKRQEDAGYDICVPYNLYLKRNEFIKIVLPIIRDWDLQHPSINAYIFGRSSKSRSGII 289 Query 609 TQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILMDK------KHGKLE----PW 658 +G + V YN + I G + AQ++L+D KH L P+ Sbjct 290 VCPTAWPAGEHCKFYV--YNLTGDDIRIKTGDRLAQVLLIDHNTQIHLKHNVLSNIAFPY 347 Query 659 GESRK--------------------TERGEKGFGST 674 K +ERG +GFGST Sbjct 348 AIRGKCGIPGVQWYFTKTLDLIATPSERGTRGFGST 383