RID: 6K47KA7X013 Job Title:POLN_SLDV Q8QL53 Polyprotein P1234 (RNA-directed Program: BLASTP Query: POLN_SLDV Q8QL53 Polyprotein P1234 (RNA-directed RNA polymerase nsP4) ID: lcl|Query_62651(amino acid) Length: 237 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sleeping dis... NA 78540 497 497 100% 2e-161 100.00 2593 Q8QL53.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Salmon pancr... NA 84589 490 490 100% 8e-159 97.47 2601 Q8JJX1.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Barmah Fores... NA 11020 239 239 99% 2e-71 51.69 2411 P87515.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Getah virus NA 59300 235 235 97% 9e-70 51.72 2467 Q5Y389.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sagiyama virus NA 59303 234 234 97% 1e-69 51.72 2467 Q9JGL0.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Chikungunya ... NA 371094 229 229 97% 7e-68 52.16 2474 Q8JUX6.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Mayaro virus... NA 374990 229 229 99% 7e-68 48.73 2437 Q8QZ73.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Chikungunya ... NA 371095 229 229 97% 7e-68 52.16 2474 Q5XXP4.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... O'nyong-nyon... NA 11028 228 228 97% 2e-67 51.29 2514 P13886.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... O'nyong-nyon... NA 374989 226 226 97% 7e-67 50.86 2513 O90368.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Semliki Fore... NA 11033 226 226 97% 1e-66 48.71 2432 P08411.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36384 224 224 99% 6e-66 48.32 2499 Q9WJC7.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 376610 223 223 99% 2e-65 48.32 2497 Q8V294.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Igbo Ora virus NA 79899 223 223 97% 2e-65 50.00 2513 O90370.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36385 222 222 99% 2e-65 48.32 2493 P36328.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36382 222 222 99% 2e-65 48.32 2485 P36327.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 11038 222 222 99% 2e-65 48.32 2493 P27282.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Ross river v... NA 11031 218 218 97% 5e-64 48.71 2480 P13887.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Aura virus NA 44158 218 218 100% 1e-63 47.68 2499 Q86924.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Ockelbo virus NA 31699 214 214 100% 1e-62 47.26 2515 P27283.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sindbis virus NA 11034 214 214 100% 1e-62 47.26 2513 P03317.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374597 210 210 99% 3e-61 47.46 2474 Q306W8.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374596 209 209 99% 8e-61 47.46 2471 Q306W6.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Western equi... NA 11039 209 209 99% 1e-60 48.31 2467 P13896.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374598 207 207 99% 3e-60 47.88 2494 Q4QXJ8.3 Alignments: >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sleeping disease virus] Sequence ID: Q8QL53.1 Length: 2593 Range 1: 39 to 275 Score:497 bits(1280), Expect:2e-161, Method:Compositional matrix adjust., Identities:237/237(100%), Positives:237/237(100%), Gaps:0/237(0%) Query 1 VASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVADIGSAPARRVGAPDNVTYHSVCPR 60 VASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVADIGSAPARRVGAPDNVTYHSVCPR Sbjct 39 VASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVADIGSAPARRVGAPDNVTYHSVCPR 98 Query 61 KCAEDPERLASYARKLVRAVEKGDGHLVSDRITDLKDVLENPDTSLETTSICLNDDVSCK 120 KCAEDPERLASYARKLVRAVEKGDGHLVSDRITDLKDVLENPDTSLETTSICLNDDVSCK Sbjct 99 KCAEDPERLASYARKLVRAVEKGDGHLVSDRITDLKDVLENPDTSLETTSICLNDDVSCK 158 Query 121 VKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGFEPFVFHTDAMAGSFPLYDANWSDS 180 VKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGFEPFVFHTDAMAGSFPLYDANWSDS Sbjct 159 VKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGFEPFVFHTDAMAGSFPLYDANWSDS 218 Query 181 AVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSGEIHYSVGSTHYVEDRDKLKSWH 237 AVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSGEIHYSVGSTHYVEDRDKLKSWH Sbjct 219 AVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSGEIHYSVGSTHYVEDRDKLKSWH 275 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Salmon pancreas disease virus] Sequence ID: Q8JJX1.1 Length: 2601 Range 1: 39 to 275 Score:490 bits(1261), Expect:8e-159, Method:Compositional matrix adjust., Identities:231/237(97%), Positives:236/237(99%), Gaps:0/237(0%) Query 1 VASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVADIGSAPARRVGAPDNVTYHSVCPR 60 VASNRSSNDHAAARAFSHLATKWIERDI GRQVIVADIGSAPARR+GAPDNVTYHSVCPR Sbjct 39 VASNRSSNDHAAARAFSHLATKWIERDIGGRQVIVADIGSAPARRIGAPDNVTYHSVCPR 98 Query 61 KCAEDPERLASYARKLVRAVEKGDGHLVSDRITDLKDVLENPDTSLETTSICLNDDVSCK 120 KCAEDPERLASYARKLVRAVE+GDGHLV+++ITDLKDVLENPDTSLETTSICLNDDVSCK Sbjct 99 KCAEDPERLASYARKLVRAVERGDGHLVNEKITDLKDVLENPDTSLETTSICLNDDVSCK 158 Query 121 VKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGFEPFVFHTDAMAGSFPLYDANWSDS 180 VKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGFEPFVFHTDAMAGSFPLYDANWSDS Sbjct 159 VKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGFEPFVFHTDAMAGSFPLYDANWSDS 218 Query 181 AVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSGEIHYSVGSTHYVEDRDKLKSWH 237 AVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSGEIHYSVGSTHYVEDRDKLKSWH Sbjct 219 AVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSGEIHYSVGSTHYVEDRDKLKSWH 275 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Barmah Forest virus] Sequence ID: P87515.3 Length: 2411 Range 1: 31 to 257 Score:239 bits(611), Expect:2e-71, Method:Compositional matrix adjust., Identities:122/236(52%), Positives:156/236(66%), Gaps:9/236(3%) Query 2 ASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVADIGSAPARRVGAPDNVTYHSVCPRK 61 A + NDHA ARAFSHLATK IE + Q+I+ DIGSAPARR+ + YH VCP K Sbjct 31 AVQTTPNDHAHARAFSHLATKLIEMETAKDQIIL-DIGSAPARRLYSEHK--YHCVCPMK 87 Query 62 CAEDPERLASYARKLVRAVEKGDGHLVSDRITDLKDVLENPDTSLETTSICLNDDVSCKV 121 C EDPER+ YARKL+ KG ++++ DL+DVL PD +ET S+CL+ D SC+ Sbjct 88 CTEDPERMLGYARKLIAGSAKGK----AEKLRDLRDVLATPD--IETQSLCLHTDASCRY 141 Query 122 KADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGFEPFVFHTDAMAGSFPLYDANWSDSA 181 + D+AVYQDVYA+DAP+T+Y QA KG R YWIGF+ F DA+AG++PLY NW+D Sbjct 142 RGDVAVYQDVYAIDAPTTLYHQALKGVRTAYWIGFDTTPFMYDALAGAYPLYSTNWADEQ 201 Query 182 VLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSGEIHYSVGSTHYVEDRDKLKSWH 237 VL ++N+ LC +SE K R R K L S + +SVGST Y E R L+SWH Sbjct 202 VLESRNIGLCSDKVSEGGKKGRSILRKKFLKQSDRVMFSVGSTLYTESRKLLQSWH 257 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Getah virus] Sequence ID: Q5Y389.3 Length: 2467 Range 1: 32 to 258 Score:235 bits(599), Expect:9e-70, Method:Compositional matrix adjust., Identities:120/232(52%), Positives:158/232(68%), Gaps:5/232(2%) Query 6 SSNDHAAARAFSHLATKWIERDIDGRQVIVADIGSAPARRVGAPDNVTYHSVCPRKCAED 65 + NDHA ARAFSHLATK IE+++ V + D+GSAPARR+ + + TYH +CP K AED Sbjct 32 TPNDHANARAFSHLATKLIEQEVPT-GVTILDVGSAPARRLMS--DHTYHCICPMKSAED 88 Query 66 PERLASYARKLVRAVEKGDGHLVSDRITDLKDVLENPDTSLETTSICLNDDVSCKVKADI 125 PERLA+YARKL +A VS +ITDL+DV+ PD LE+ + CL+ D +C+ +A++ Sbjct 89 PERLANYARKLAKASGTVLDKNVSGKITDLQDVMATPD--LESPTFCLHTDETCRTRAEV 146 Query 126 AVYQDVYAVDAPSTIYAQADKGTRVVYWIGFEPFVFHTDAMAGSFPLYDANWSDSAVLAA 185 AVYQDVYAV AP+++Y QA KG R YWIGF+ F +A+AG++P Y NW+D VL A Sbjct 147 AVYQDVYAVHAPTSLYHQAIKGVRTAYWIGFDTTPFMFEALAGAYPAYSTNWADEQVLQA 206 Query 186 KNLPLCYSGLSEDSIKWRFRFRDKPLVPSGEIHYSVGSTHYVEDRDKLKSWH 237 +N+ LC +GLSE R K L PS + +SVGST Y E R L+SWH Sbjct 207 RNIGLCATGLSEGRRGKLSIMRKKCLRPSDRVMFSVGSTLYTESRKLLRSWH 258 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sagiyama virus] Sequence ID: Q9JGL0.3 Length: 2467 Range 1: 32 to 258 Score:234 bits(598), Expect:1e-69, Method:Compositional matrix adjust., Identities:120/232(52%), Positives:158/232(68%), Gaps:5/232(2%) Query 6 SSNDHAAARAFSHLATKWIERDIDGRQVIVADIGSAPARRVGAPDNVTYHSVCPRKCAED 65 + NDHA ARAFSHLATK IE+++ V + D+GSAPARR+ + + TYH +CP K AED Sbjct 32 TPNDHANARAFSHLATKLIEQEVPT-GVTILDVGSAPARRLMS--DHTYHCICPMKSAED 88 Query 66 PERLASYARKLVRAVEKGDGHLVSDRITDLKDVLENPDTSLETTSICLNDDVSCKVKADI 125 PERLA+YARKL +A VS +ITDL+DV+ PD LE+ + CL+ D +C+ +A++ Sbjct 89 PERLANYARKLAKASGTVLDKNVSGKITDLQDVMATPD--LESPTFCLHTDETCRTRAEV 146 Query 126 AVYQDVYAVDAPSTIYAQADKGTRVVYWIGFEPFVFHTDAMAGSFPLYDANWSDSAVLAA 185 AVYQDVYAV AP+++Y QA KG R YWIGF+ F +A+AG++P Y NW+D VL A Sbjct 147 AVYQDVYAVHAPTSLYHQAIKGVRTAYWIGFDTTPFMFEALAGAYPAYSTNWADEQVLQA 206 Query 186 KNLPLCYSGLSEDSIKWRFRFRDKPLVPSGEIHYSVGSTHYVEDRDKLKSWH 237 +N+ LC +GLSE R K L PS + +SVGST Y E R L+SWH Sbjct 207 RNIGLCATGLSEGRRGKLSIMRKKCLRPSDRVMFSVGSTLYTESRKLLRSWH 258 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Chikungunya virus strain S27-African prototype] Sequence ID: Q8JUX6.1 Length: 2474 Range 1: 33 to 259 Score:229 bits(585), Expect:7e-68, Method:Compositional matrix adjust., Identities:121/232(52%), Positives:155/232(66%), Gaps:5/232(2%) Query 6 SSNDHAAARAFSHLATKWIERDIDGRQVIVADIGSAPARRVGAPDNVTYHSVCPRKCAED 65 + NDHA ARAFSHLA K IE++ID I+ DIGSAPARR+ + + YH VCP + AED Sbjct 33 TPNDHANARAFSHLAIKLIEQEIDPDSTIL-DIGSAPARRMMS--DRKYHCVCPMRSAED 89 Query 66 PERLASYARKLVRAVEKGDGHLVSDRITDLKDVLENPDTSLETTSICLNDDVSCKVKADI 125 PERLA+YARKL A K +S +I DL+ V+ PDT ET + CL+ DVSC+ +AD+ Sbjct 90 PERLANYARKLASAAGKVLDRNISGKIGDLQAVMAVPDT--ETPTFCLHTDVSCRQRADV 147 Query 126 AVYQDVYAVDAPSTIYAQADKGTRVVYWIGFEPFVFHTDAMAGSFPLYDANWSDSAVLAA 185 A+YQDVYAV AP+++Y QA KG R+ YW+GF+ F +AMAG++P Y NW+D VL A Sbjct 148 AIYQDVYAVHAPTSLYHQAIKGVRLAYWVGFDTTPFMYNAMAGAYPSYSTNWADEQVLKA 207 Query 186 KNLPLCYSGLSEDSIKWRFRFRDKPLVPSGEIHYSVGSTHYVEDRDKLKSWH 237 KN+ LC + L+E R K L P + +SVGST Y E R LKSWH Sbjct 208 KNIGLCSTDLTEGRRGKLSIMRGKKLEPCDRVLFSVGSTLYPESRKLLKSWH 259 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Mayaro virus (strain Brazil)] Sequence ID: Q8QZ73.3 Length: 2437 Range 1: 29 to 259 Score:229 bits(585), Expect:7e-68, Method:Compositional matrix adjust., Identities:115/236(49%), Positives:156/236(66%), Gaps:5/236(2%) Query 2 ASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVADIGSAPARRVGAPDNVTYHSVCPRK 61 A + NDHA ARAFSHLATK IE++ + + ++ DIGSAPARR+ + TYH VCP + Sbjct 29 AQQVTPNDHANARAFSHLATKLIEQETE-KDTLILDIGSAPARRMMSEH--TYHCVCPMR 85 Query 62 CAEDPERLASYARKLVRAVEKGDGHLVSDRITDLKDVLENPDTSLETTSICLNDDVSCKV 121 AEDPERL YARKL +A + ++ +I DL+ V+ PD E+ + CL+ D +C+ Sbjct 86 SAEDPERLLYYARKLAKASGEVVDRNIAAKIDDLQSVMATPDN--ESRTFCLHTDQTCRT 143 Query 122 KADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGFEPFVFHTDAMAGSFPLYDANWSDSA 181 +A++AVYQDVYAV AP+++Y QA KG R YWIGF+ F D MAG++P Y NW+D Sbjct 144 QAEVAVYQDVYAVHAPTSLYFQAMKGVRTAYWIGFDTTPFMFDTMAGAYPTYATNWADEQ 203 Query 182 VLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSGEIHYSVGSTHYVEDRDKLKSWH 237 VL A+N+ LC + L+E + R K + PS +I +SVGST Y+E R LKSWH Sbjct 204 VLKARNIGLCSASLTEGHLGKLSIMRKKKMTPSDQIMFSVGSTLYIESRRLLKSWH 259 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Chikungunya virus strain Senegal 37997] Sequence ID: Q5XXP4.1 Length: 2474 Range 1: 33 to 259 Score:229 bits(585), Expect:7e-68, Method:Compositional matrix adjust., Identities:121/232(52%), Positives:155/232(66%), Gaps:5/232(2%) Query 6 SSNDHAAARAFSHLATKWIERDIDGRQVIVADIGSAPARRVGAPDNVTYHSVCPRKCAED 65 + NDHA ARAFSHLA K IE++ID I+ DIGSAPARR+ + + YH VCP + AED Sbjct 33 TPNDHANARAFSHLAIKLIEQEIDPDSTIL-DIGSAPARRMMS--DRKYHCVCPMRSAED 89 Query 66 PERLASYARKLVRAVEKGDGHLVSDRITDLKDVLENPDTSLETTSICLNDDVSCKVKADI 125 PERLA+YARKL A K +S++I DL+ V+ PD ET + CL+ DVSC+ +AD+ Sbjct 90 PERLANYARKLASAAGKVLDRNISEKIGDLQAVMAVPDA--ETPTFCLHTDVSCRQRADV 147 Query 126 AVYQDVYAVDAPSTIYAQADKGTRVVYWIGFEPFVFHTDAMAGSFPLYDANWSDSAVLAA 185 A+YQDVYAV AP+++Y QA KG RV YWIGF+ F +AMAG++P Y NW+D VL A Sbjct 148 AIYQDVYAVHAPTSLYHQAIKGVRVAYWIGFDTTPFMYNAMAGAYPSYSTNWADEQVLKA 207 Query 186 KNLPLCYSGLSEDSIKWRFRFRDKPLVPSGEIHYSVGSTHYVEDRDKLKSWH 237 KN+ LC + L+E R K + P + +SVGST Y E R LKSWH Sbjct 208 KNIGLCSTDLTEGRRGKLSIMRGKKMKPCDRVLFSVGSTLYPESRKLLKSWH 259 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [O'nyong-nyong virus strain Gulu] Sequence ID: P13886.2 Length: 2514 Range 1: 33 to 259 Score:228 bits(582), Expect:2e-67, Method:Compositional matrix adjust., Identities:119/232(51%), Positives:154/232(66%), Gaps:5/232(2%) Query 6 SSNDHAAARAFSHLATKWIERDIDGRQVIVADIGSAPARRVGAPDNVTYHSVCPRKCAED 65 + NDHA ARAFSHLA K IE++ID I+ DIGSAPARR+ + + YH VCP + AED Sbjct 33 TPNDHANARAFSHLAIKLIEQEIDPDSTIL-DIGSAPARRMMS--DRKYHCVCPMRSAED 89 Query 66 PERLASYARKLVRAVEKGDGHLVSDRITDLKDVLENPDTSLETTSICLNDDVSCKVKADI 125 PERLA+YARKL A K +S +I DL+ V+ P+ +ET++ CL+ D +CK + D+ Sbjct 90 PERLANYARKLASAAGKVTDKNISGKINDLQAVMAVPN--METSTFCLHTDATCKQRGDV 147 Query 126 AVYQDVYAVDAPSTIYAQADKGTRVVYWIGFEPFVFHTDAMAGSFPLYDANWSDSAVLAA 185 A+YQDVYAV AP+++Y QA KG RV YWIGF+ F +AMAG++P Y NW+D VL A Sbjct 148 AIYQDVYAVHAPTSLYHQAIKGVRVAYWIGFDTTPFMYNAMAGAYPSYSTNWADEQVLKA 207 Query 186 KNLPLCYSGLSEDSIKWRFRFRDKPLVPSGEIHYSVGSTHYVEDRDKLKSWH 237 KN+ LC + LSE R K L P + +SVGST Y E R L+SWH Sbjct 208 KNIGLCSTDLSEGRRGKLSIMRGKKLKPCDRVLFSVGSTLYPESRKLLQSWH 259 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [O'nyong-nyong virus strain SG650] Sequence ID: O90368.1 Length: 2513 Range 1: 33 to 259 Score:226 bits(577), Expect:7e-67, Method:Compositional matrix adjust., Identities:118/232(51%), Positives:153/232(65%), Gaps:5/232(2%) Query 6 SSNDHAAARAFSHLATKWIERDIDGRQVIVADIGSAPARRVGAPDNVTYHSVCPRKCAED 65 + NDHA ARAFSHLA K IE++ID I+ DIG APARR+ + + YH VCP + AED Sbjct 33 TPNDHANARAFSHLAIKLIEQEIDPDSTIL-DIGPAPARRMMS--DRKYHCVCPMRSAED 89 Query 66 PERLASYARKLVRAVEKGDGHLVSDRITDLKDVLENPDTSLETTSICLNDDVSCKVKADI 125 PERLA+YARKL A K +S +I DL+ V+ P+ +ET++ CL+ D +CK + D+ Sbjct 90 PERLANYARKLASAAGKVTDKNISGKINDLQAVMAVPN--METSTFCLHTDATCKQRGDV 147 Query 126 AVYQDVYAVDAPSTIYAQADKGTRVVYWIGFEPFVFHTDAMAGSFPLYDANWSDSAVLAA 185 A+YQDVYAV AP+++Y QA KG RV YWIGF+ F +AMAG++P Y NW+D VL A Sbjct 148 AIYQDVYAVHAPTSLYHQAIKGVRVAYWIGFDTTPFMYNAMAGAYPSYSTNWADEQVLKA 207 Query 186 KNLPLCYSGLSEDSIKWRFRFRDKPLVPSGEIHYSVGSTHYVEDRDKLKSWH 237 KN+ LC + LSE R K L P + +SVGST Y E R L+SWH Sbjct 208 KNIGLCSTDLSEGRRGKLSIMRGKKLKPCDRVLFSVGSTLYPESRKLLQSWH 259 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Semliki Forest virus] Sequence ID: P08411.2 Length: 2432 Range 1: 34 to 260 Score:226 bits(575), Expect:1e-66, Method:Compositional matrix adjust., Identities:113/232(49%), Positives:152/232(65%), Gaps:5/232(2%) Query 6 SSNDHAAARAFSHLATKWIERDIDGRQVIVADIGSAPARRVGAPDNVTYHSVCPRKCAED 65 + NDHA ARAFSHLATK IE++ D + ++ DIGSAP+RR+ + YH VCP + AED Sbjct 34 TPNDHANARAFSHLATKLIEQETD-KDTLILDIGSAPSRRMMSTHK--YHCVCPMRSAED 90 Query 66 PERLASYARKLVRAVEKGDGHLVSDRITDLKDVLENPDTSLETTSICLNDDVSCKVKADI 125 PERL YA+KL A K ++ +ITDL+ V+ PD E+ + CL+ DV+C+ A++ Sbjct 91 PERLVCYAKKLAAASGKVLDREIAGKITDLQTVMATPDA--ESPTFCLHTDVTCRTAAEV 148 Query 126 AVYQDVYAVDAPSTIYAQADKGTRVVYWIGFEPFVFHTDAMAGSFPLYDANWSDSAVLAA 185 AVYQDVYAV AP+++Y QA KG R YWIGF+ F DA+AG++P Y NW+D VL A Sbjct 149 AVYQDVYAVHAPTSLYHQAMKGVRTAYWIGFDTTPFMFDALAGAYPTYATNWADEQVLQA 208 Query 186 KNLPLCYSGLSEDSIKWRFRFRDKPLVPSGEIHYSVGSTHYVEDRDKLKSWH 237 +N+ LC + L+E + R K L P + +SVGST Y E R L+SWH Sbjct 209 RNIGLCAASLTEGRLGKLSILRKKQLKPCDTVMFSVGSTLYTESRKLLRSWH 260 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Mena II)] Sequence ID: Q9WJC7.3 Length: 2499 Range 1: 29 to 259 Score:224 bits(570), Expect:6e-66, Method:Compositional matrix adjust., Identities:115/238(48%), Positives:158/238(66%), Gaps:9/238(3%) Query 2 ASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVADIGSAPARRVGAPDNVTYHSVCPRK 61 A + NDHA ARAFSHLA+K IE +++ I+ DIGSAPARR+ + YH +CP K Sbjct 29 AKQVTDNDHANARAFSHLASKLIETEVEPSDTIL-DIGSAPARRMYSKHK--YHCICPMK 85 Query 62 CAEDPERLASYARKLVRAVEKGDGHLVSDRITDLKDVLENPDTSLETTSICLNDDVSCKV 121 CAEDP+RL YA KL + ++ + ++ +L +V+ +PD LET +ICL+DD +C+ Sbjct 86 CAEDPDRLFKYAAKLKKNCKEITDKELDKKMKELAEVMNDPD--LETETICLHDDETCRF 143 Query 122 KADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGFE--PFVFHTDAMAGSFPLYDANWSD 179 + +AVYQDVYAVD P+++Y QA+KG RV YWIGF+ PF+F +AG++P Y NW+D Sbjct 144 EGQVAVYQDVYAVDGPTSLYHQANKGVRVAYWIGFDTTPFMFKN--LAGAYPSYSTNWAD 201 Query 180 SAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSGEIHYSVGSTHYVEDRDKLKSWH 237 VL A+N+ LC S + E S + R K L PS + +SVGST Y E RD L+SWH Sbjct 202 ETVLTARNIGLCSSDVMERSRRGMSILRKKFLKPSNNVLFSVGSTIYHEKRDLLRSWH 259 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain CPA201)] Sequence ID: Q8V294.3 Length: 2497 Range 1: 29 to 259 Score:223 bits(567), Expect:2e-65, Method:Compositional matrix adjust., Identities:115/238(48%), Positives:157/238(65%), Gaps:9/238(3%) Query 2 ASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVADIGSAPARRVGAPDNVTYHSVCPRK 61 A + NDHA ARAFSHLA+K IE +++ I+ DIGSAPARR+ + YH +CP K Sbjct 29 AKQVTDNDHANARAFSHLASKLIETEVEPSDTIL-DIGSAPARRMYSKHK--YHCICPMK 85 Query 62 CAEDPERLASYARKLVRAVEKGDGHLVSDRITDLKDVLENPDTSLETTSICLNDDVSCKV 121 CAEDP+RL YA KL + + + ++ +L +V+ +PD LET +ICL+DD +C+ Sbjct 86 CAEDPDRLFKYAAKLKKNCKDITDKELDKKMKELAEVMSDPD--LETETICLHDDETCRF 143 Query 122 KADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGFE--PFVFHTDAMAGSFPLYDANWSD 179 + +AVYQDVYAVD P+++Y QA+KG RV YWIGF+ PF+F +AG++P Y NW+D Sbjct 144 EGQVAVYQDVYAVDGPTSLYHQANKGVRVAYWIGFDTTPFMFKN--LAGAYPSYSTNWAD 201 Query 180 SAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSGEIHYSVGSTHYVEDRDKLKSWH 237 VL A+N+ LC S + E S + R K L PS + +SVGST Y E RD L+SWH Sbjct 202 ETVLTARNIGLCSSDVMERSRRGMSILRKKFLKPSNNVLFSVGSTIYHEKRDLLRSWH 259 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Igbo Ora virus] Sequence ID: O90370.1 Length: 2513 Range 1: 33 to 259 Score:223 bits(567), Expect:2e-65, Method:Compositional matrix adjust., Identities:116/232(50%), Positives:151/232(65%), Gaps:5/232(2%) Query 6 SSNDHAAARAFSHLATKWIERDIDGRQVIVADIGSAPARRVGAPDNVTYHSVCPRKCAED 65 + NDHA ARAFSHLA K IE++ID I+ IGSAPARR+ + + YH VCP + AED Sbjct 33 TPNDHANARAFSHLAIKLIEQEIDPGSTILG-IGSAPARRMMS--DRKYHCVCPMRSAED 89 Query 66 PERLASYARKLVRAVEKGDGHLVSDRITDLKDVLENPDTSLETTSICLNDDVSCKVKADI 125 PERLA+YARKL A K +S +I DL+ V+ P+ +ET++ CL+ D +CK + D+ Sbjct 90 PERLANYARKLASAAGKVTDKNISGKINDLQAVMAVPN--METSTFCLHTDATCKQRGDV 147 Query 126 AVYQDVYAVDAPSTIYAQADKGTRVVYWIGFEPFVFHTDAMAGSFPLYDANWSDSAVLAA 185 A+YQDVYAV AP+++Y QA KG V YWIGF+ F +AMAG++P Y NW+D VL A Sbjct 148 AIYQDVYAVHAPTSLYHQAIKGVHVAYWIGFDTTPFMYNAMAGAYPSYSTNWADEQVLKA 207 Query 186 KNLPLCYSGLSEDSIKWRFRFRDKPLVPSGEIHYSVGSTHYVEDRDKLKSWH 237 KN+ LC + LSE R K P + +SVGST Y E R L+SWH Sbjct 208 KNIGLCSTDLSEGRRGKLSIMRGKKFKPCDRVLFSVGSTLYPESRKLLQSWH 259 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain P676)] Sequence ID: P36328.2 Length: 2493 Range 1: 29 to 259 Score:222 bits(566), Expect:2e-65, Method:Compositional matrix adjust., Identities:115/238(48%), Positives:157/238(65%), Gaps:9/238(3%) Query 2 ASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVADIGSAPARRVGAPDNVTYHSVCPRK 61 A + NDHA ARAFSHLA+K IE ++D I+ DIGSAPARR+ + YH +CP + Sbjct 29 AKQVTDNDHANARAFSHLASKLIETEVDPSDTIL-DIGSAPARRMYSKHK--YHCICPMR 85 Query 62 CAEDPERLASYARKLVRAVEKGDGHLVSDRITDLKDVLENPDTSLETTSICLNDDVSCKV 121 CAEDP+RL YA KL + ++ + ++ +L V+ +PD LET ++CL+DD SC+ Sbjct 86 CAEDPDRLYKYATKLKKNCKEITDKELDKKMKELAAVMSDPD--LETETMCLHDDESCRY 143 Query 122 KADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGFE--PFVFHTDAMAGSFPLYDANWSD 179 + +AVYQDVYAVD P+++Y QA+KG RV YWIGF+ PF+F +AG++P Y NW+D Sbjct 144 EGQVAVYQDVYAVDGPTSLYHQANKGVRVAYWIGFDTTPFMFKN--LAGAYPSYSTNWAD 201 Query 180 SAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSGEIHYSVGSTHYVEDRDKLKSWH 237 VL A+N+ LC S + E S + R K L PS + +SVGST Y E RD L+SWH Sbjct 202 ETVLTARNIGLCSSDVMERSRRGMSILRKKYLKPSNNVLFSVGSTIYHEKRDLLRSWH 259 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain 3880)] Sequence ID: P36327.3 Length: 2485 Range 1: 29 to 259 Score:222 bits(566), Expect:2e-65, Method:Compositional matrix adjust., Identities:115/238(48%), Positives:157/238(65%), Gaps:9/238(3%) Query 2 ASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVADIGSAPARRVGAPDNVTYHSVCPRK 61 A + NDHA ARAFSHLA+K IE ++D I+ DIGSAPARR+ + YH +CP + Sbjct 29 AKQVTDNDHANARAFSHLASKLIETEVDPSDTIL-DIGSAPARRMYSKHK--YHCICPMR 85 Query 62 CAEDPERLASYARKLVRAVEKGDGHLVSDRITDLKDVLENPDTSLETTSICLNDDVSCKV 121 CAEDP+RL YA KL + ++ + ++ +L V+ +PD LET ++CL+DD SC+ Sbjct 86 CAEDPDRLYKYATKLKKNCKEITDKELDKKMKELAAVMSDPD--LETETMCLHDDESCRY 143 Query 122 KADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGFE--PFVFHTDAMAGSFPLYDANWSD 179 + +AVYQDVYAVD P+++Y QA+KG RV YWIGF+ PF+F +AG++P Y NW+D Sbjct 144 EGQVAVYQDVYAVDGPTSLYHQANKGVRVAYWIGFDTTPFMFKN--LAGAYPSYSTNWAD 201 Query 180 SAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSGEIHYSVGSTHYVEDRDKLKSWH 237 VL A+N+ LC S + E S + R K L PS + +SVGST Y E RD L+SWH Sbjct 202 ETVLTARNIGLCSSDVMERSRRGMSILRKKYLKPSNNVLFSVGSTIYHEKRDLLRSWH 259 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Trinidad donkey)] Sequence ID: P27282.3 Length: 2493 Range 1: 29 to 259 Score:222 bits(566), Expect:2e-65, Method:Compositional matrix adjust., Identities:115/238(48%), Positives:157/238(65%), Gaps:9/238(3%) Query 2 ASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVADIGSAPARRVGAPDNVTYHSVCPRK 61 A + NDHA ARAFSHLA+K IE ++D I+ DIGSAPARR+ + YH +CP + Sbjct 29 AKQVTDNDHANARAFSHLASKLIETEVDPSDTIL-DIGSAPARRMYSKHK--YHCICPMR 85 Query 62 CAEDPERLASYARKLVRAVEKGDGHLVSDRITDLKDVLENPDTSLETTSICLNDDVSCKV 121 CAEDP+RL YA KL + ++ + ++ +L V+ +PD LET ++CL+DD SC+ Sbjct 86 CAEDPDRLYKYATKLKKNCKEITDKELDKKMKELAAVMSDPD--LETETMCLHDDESCRY 143 Query 122 KADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGFE--PFVFHTDAMAGSFPLYDANWSD 179 + +AVYQDVYAVD P+++Y QA+KG RV YWIGF+ PF+F +AG++P Y NW+D Sbjct 144 EGQVAVYQDVYAVDGPTSLYHQANKGVRVAYWIGFDTTPFMFKN--LAGAYPSYSTNWAD 201 Query 180 SAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSGEIHYSVGSTHYVEDRDKLKSWH 237 VL A+N+ LC S + E S + R K L PS + +SVGST Y E RD L+SWH Sbjct 202 ETVLTARNIGLCSSDVMERSRRGMSILRKKYLKPSNNVLFSVGSTIYHEKRDLLRSWH 259 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ross river virus (STRAIN NB5092)] Sequence ID: P13887.2 Length: 2480 Range 1: 32 to 257 Score:218 bits(556), Expect:5e-64, Method:Compositional matrix adjust., Identities:113/232(49%), Positives:153/232(65%), Gaps:6/232(2%) Query 6 SSNDHAAARAFSHLATKWIERDIDGRQVIVADIGSAPARRVGAPDNVTYHSVCPRKCAED 65 + NDHA ARAFSHLATK IE+++ + + D+GSAPARR+ + + +YH +CP K AED Sbjct 32 TPNDHANARAFSHLATKLIEQEVPA-NITILDVGSAPARRLMS--DHSYHCICPMKSAED 88 Query 66 PERLASYARKLVRAVEKGDGHLVSDRITDLKDVLENPDTSLETTSICLNDDVSCKVKADI 125 PERLA+YARKL + + VS +ITDL+DV+ PD LE+ + CL+ D +C+ +A++ Sbjct 89 PERLANYARKLAKTAGEVLDKNVSGKITDLQDVMATPD--LESPTFCLHTDETCRTRAEV 146 Query 126 AVYQDVYAVDAPSTIYAQADKGTRVVYWIGFEPFVFHTDAMAGSFPLYDANWSDSAVLAA 185 AVYQDV AP+++Y QA KG R VYWIGF+ F + +AG++P Y NW+D VL A Sbjct 147 AVYQDV-XXHAPTSLYHQAMKGVRTVYWIGFDTTPFMFEVVAGAYPTYSTNWADEQVLQA 205 Query 186 KNLPLCYSGLSEDSIKWRFRFRDKPLVPSGEIHYSVGSTHYVEDRDKLKSWH 237 +N+ LC + LSE R K L PS +SVG T Y+E R LKSWH Sbjct 206 RNIGLCATSLSEGHRGKISIMRKKRLRPSDRXMFSVGXTLYIESRRLLKSWH 257 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Aura virus] Sequence ID: Q86924.3 Length: 2499 Range 1: 30 to 260 Score:218 bits(554), Expect:1e-63, Method:Compositional matrix adjust., Identities:113/237(48%), Positives:154/237(64%), Gaps:6/237(2%) Query 1 VASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVADIGSAPARRVGAPDNVTYHSVCPR 60 VA + NDHA ARAFSHLA+K IE +I V + DIGSAPARR+ + YH VCP Sbjct 30 VAQQVTPNDHANARAFSHLASKLIEHEIPT-SVTILDIGSAPARRMYSEHK--YHCVCPM 86 Query 61 KCAEDPERLASYARKLVRAVEKGDGHLVSDRITDLKDVLENPDTSLETTSICLNDDVSCK 120 + EDP+RL +YA +L + + D++ DLK VLE+PD ET +IC ++DV C+ Sbjct 87 RSPEDPDRLMNYASRLADKAGEITNKRLHDKLADLKSVLESPDA--ETGTICFHNDVICR 144 Query 121 VKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGFEPFVFHTDAMAGSFPLYDANWSDS 180 A+++V Q+VY ++APSTIY QA KG R +YWIGF+ F +MAGS+P Y+ NW+D Sbjct 145 TTAEVSVMQNVY-INAPSTIYHQALKGVRKLYWIGFDTTQFMFSSMAGSYPSYNTNWADE 203 Query 181 AVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSGEIHYSVGSTHYVEDRDKLKSWH 237 VL A+N+ LC + L E ++ FR K L P +++SVGST Y E+R L+SWH Sbjct 204 RVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTNVYFSVGSTLYPENRADLQSWH 260 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ockelbo virus] Sequence ID: P27283.2 Length: 2515 Range 1: 30 to 260 Score:214 bits(545), Expect:1e-62, Method:Compositional matrix adjust., Identities:112/237(47%), Positives:148/237(62%), Gaps:6/237(2%) Query 1 VASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVADIGSAPARRVGAPDNVTYHSVCPR 60 VA + NDHA ARAFSHLA+K IE ++ I+ DIGSAPARR+ + YH VCP Sbjct 30 VAQQATPNDHANARAFSHLASKLIELEVPTTATIL-DIGSAPARRMFSEHQ--YHCVCPM 86 Query 61 KCAEDPERLASYARKLVRAVEKGDGHLVSDRITDLKDVLENPDTSLETTSICLNDDVSCK 120 + EDP+R+ YA KL K + ++I DL+ VL+ PD ET S+C ++DV+C Sbjct 87 RSPEDPDRMMKYASKLAEKACKITNKNLHEKIKDLRTVLDTPDA--ETPSLCFHNDVTCN 144 Query 121 VKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGFEPFVFHTDAMAGSFPLYDANWSDS 180 +A+ +V QDVY ++AP TIY QA KG R +YWIGF+ F AMAGS+P Y+ NW+D Sbjct 145 TRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGFDTTQFMFSAMAGSYPAYNTNWADE 203 Query 181 AVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSGEIHYSVGSTHYVEDRDKLKSWH 237 VL A+N+ LC + LSE R K L P +++SVGST Y E R L+SWH Sbjct 204 KVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRVYFSVGSTLYPEHRASLQSWH 260 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; AltName: Full=p270 nonstructural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sindbis virus] Sequence ID: P03317.2 Length: 2513 Range 1: 30 to 260 Score:214 bits(545), Expect:1e-62, Method:Compositional matrix adjust., Identities:112/237(47%), Positives:149/237(62%), Gaps:6/237(2%) Query 1 VASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVADIGSAPARRVGAPDNVTYHSVCPR 60 VA + NDHA ARAFSHLA+K IE ++ I+ DIGSAPARR+ + YH VCP Sbjct 30 VAQQVTPNDHANARAFSHLASKLIELEVPTTATIL-DIGSAPARRMFSEHQ--YHCVCPM 86 Query 61 KCAEDPERLASYARKLVRAVEKGDGHLVSDRITDLKDVLENPDTSLETTSICLNDDVSCK 120 + EDP+R+ YA KL K + ++I DL+ VL+ PD ET S+C ++DV+C Sbjct 87 RSPEDPDRMMKYASKLAEKACKITNKNLHEKIKDLRTVLDTPDA--ETPSLCFHNDVTCN 144 Query 121 VKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGFEPFVFHTDAMAGSFPLYDANWSDS 180 ++A+ +V QDVY ++AP TIY QA KG R +YWIGF+ F AMAGS+P Y+ NW+D Sbjct 145 MRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGFDTTQFMFSAMAGSYPAYNTNWADE 203 Query 181 AVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSGEIHYSVGSTHYVEDRDKLKSWH 237 VL A+N+ LC + LSE R K L P +++SVGST Y E R L+SWH Sbjct 204 KVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRVYFSVGSTLYPEHRASLQSWH 260 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain PE-3.0815)] Sequence ID: Q306W8.3 Length: 2474 Range 1: 29 to 257 Score:210 bits(535), Expect:3e-61, Method:Compositional matrix adjust., Identities:112/236(47%), Positives:150/236(63%), Gaps:7/236(2%) Query 2 ASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVADIGSAPARRVGAPDNVTYHSVCPRK 61 A+ + NDHA ARAFSHLATK IE ++D QVI+ DIGSAP R + YH +CP Sbjct 29 ATQVTDNDHANARAFSHLATKLIESEVDPDQVIL-DIGSAPVRHTHSKHK--YHCICPMI 85 Query 62 CAEDPERLASYARKLVRAVEKGDGHLVSDRITDLKDVLENPDTSLETTSICLNDDVSCKV 121 AEDP+RL YA KL R + D ++ + DL V+ PD +ET S+C++ D +C+ Sbjct 86 SAEDPDRLQRYADKL-RKSDVTD-RFIASKAADLLTVMSTPD--VETPSLCMHTDSTCRY 141 Query 122 KADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGFEPFVFHTDAMAGSFPLYDANWSDSA 181 +AVYQDVYAV AP++IY QA KG R +YWIGF+ F MAG++P Y+ NW+D + Sbjct 142 HGTVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGFDTTPFMYKNMAGAYPTYNTNWADES 201 Query 182 VLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSGEIHYSVGSTHYVEDRDKLKSWH 237 VL A+N+ LC S L E + R K L P+ ++ +SVGST Y E+R L+SWH Sbjct 202 VLEARNIGLCSSDLHEKRLGKISIMRKKKLQPTNKVVFSVGSTIYTEERILLRSWH 257 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain PE-0.0155)] Sequence ID: Q306W6.3 Length: 2471 Range 1: 29 to 257 Score:209 bits(532), Expect:8e-61, Method:Compositional matrix adjust., Identities:112/236(47%), Positives:149/236(63%), Gaps:7/236(2%) Query 2 ASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVADIGSAPARRVGAPDNVTYHSVCPRK 61 A+ + NDHA ARAFSHLATK IE ++D QVI+ DIGSAP R + YH +CP Sbjct 29 ATQVTDNDHANARAFSHLATKLIESEVDPDQVIL-DIGSAPVRHTHSKHK--YHCICPMI 85 Query 62 CAEDPERLASYARKLVRAVEKGDGHLVSDRITDLKDVLENPDTSLETTSICLNDDVSCKV 121 AEDP+RL YA KL R + D ++ + DL V+ PD +ET S+C++ D +C+ Sbjct 86 SAEDPDRLHRYADKL-RKSDVTD-RFIASKAADLLTVMSTPD--VETPSLCMHTDSTCRY 141 Query 122 KADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGFEPFVFHTDAMAGSFPLYDANWSDSA 181 +AVYQDVYAV AP++IY QA KG R +YWIGF+ F MAG++P Y+ NW+D + Sbjct 142 HGTVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGFDTTPFMYKNMAGAYPTYNTNWADES 201 Query 182 VLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSGEIHYSVGSTHYVEDRDKLKSWH 237 VL A+N+ LC S L E R K L P+ ++ +SVGST Y E+R L+SWH Sbjct 202 VLEARNIGLCSSDLHEQRFGKISIMRKKKLQPTNKVVFSVGSTIYTEERILLRSWH 257 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Western equine encephalitis virus] Sequence ID: P13896.3 Length: 2467 Range 1: 29 to 257 Score:209 bits(531), Expect:1e-60, Method:Compositional matrix adjust., Identities:114/236(48%), Positives:150/236(63%), Gaps:7/236(2%) Query 2 ASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVADIGSAPARRVGAPDNVTYHSVCPRK 61 A + NDHA ARAFSH+ATK IE ++D QVI+ DIGSAP R A N YH +CP Sbjct 29 ARQVTDNDHANARAFSHVATKLIESEVDRDQVIL-DIGSAPVRH--AHSNHRYHCICPMI 85 Query 62 CAEDPERLASYARKLVRAVEKGDGHLVSDRITDLKDVLENPDTSLETTSICLNDDVSCKV 121 AEDP+RL YA +L ++ + D ++ S + DL +V+ PD ET S+C++ D +C+ Sbjct 86 SAEDPDRLQRYAERLKKS-DITDKNIAS-KAADLLEVMSTPDA--ETPSLCMHTDATCRY 141 Query 122 KADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGFEPFVFHTDAMAGSFPLYDANWSDSA 181 +AVYQDVYAV AP++IY QA KG R +YWIGF+ F MAGS+P Y+ NW+D Sbjct 142 FGSVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGFDTTPFMYKNMAGSYPTYNTNWADER 201 Query 182 VLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSGEIHYSVGSTHYVEDRDKLKSWH 237 VL A+N+ L S L E + R K L P+ +I +SVGST Y EDR L+SWH Sbjct 202 VLEARNIGLGNSDLQESRLGKLSILRKKRLQPTNKIIFSVGSTIYTEDRSLLRSWH 257 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain Florida 91-469)] Sequence ID: Q4QXJ8.3 Length: 2494 Range 1: 29 to 257 Score:207 bits(528), Expect:3e-60, Method:Compositional matrix adjust., Identities:113/236(48%), Positives:149/236(63%), Gaps:7/236(2%) Query 2 ASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVADIGSAPARRVGAPDNVTYHSVCPRK 61 A+ + NDHA ARAFSHLATK IE ++D QVI+ DIGSAP R + YH +CP K Sbjct 29 ATQVTDNDHANARAFSHLATKLIEGEVDTDQVIL-DIGSAPVRHTHSKHK--YHCICPMK 85 Query 62 CAEDPERLASYARKLVRAVEKGDGHLVSDRITDLKDVLENPDTSLETTSICLNDDVSCKV 121 AEDP+RL YA KL R + D ++ + DL V+ PD ET S+C++ D +C+ Sbjct 86 SAEDPDRLYRYADKL-RKSDVTD-KCIASKAADLLTVMSTPDA--ETPSLCMHTDSTCRY 141 Query 122 KADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGFEPFVFHTDAMAGSFPLYDANWSDSA 181 +AVYQDVYAV AP++IY QA KG R +YWIGF+ F MAG++P Y+ NW+D + Sbjct 142 HGSVAVYQDVYAVHAPTSIYYQALKGVRTIYWIGFDTTPFMYKNMAGAYPTYNTNWADES 201 Query 182 VLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSGEIHYSVGSTHYVEDRDKLKSWH 237 VL A+N+ L S L E S R K L P+ ++ +SVGST Y E+R L+SWH Sbjct 202 VLEARNIGLGSSDLHEKSFGKVSIMRKKKLQPTNKVIFSVGSTIYTEERILLRSWH 257