TBLASTN 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= COAA_ECOLI P0A6I3 RecName: Full=Pantothenate kinase; EC=2.7.1.33; AltName: Full=Pantothenic acid kinase; AltName: Full=Rts protein; (316 letters) Database: 3g 884 sequences; 12,243,887 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AE008893 AE006468 |AE008893| Salmonella typhimurium LT2, section... 612 e-176 embl|AE006212|AE006212 Pasteurella multocida subsp. multocida st... 401 e-112 embl|AE006134|AE006134 Pasteurella multocida subsp. multocida st... 46 1e-05 AE008794 AE006468 |AE008794| Salmonella typhimurium LT2, section... 41 5e-04 >AE008893 AE006468 |AE008893| Salmonella typhimurium LT2, section 197 of 220 of the complete genome. Length = 20178 Score = 612 bits (1578), Expect = e-176 Identities = 302/316 (95%), Positives = 313/316 (99%) Frame = -1 Query: 1 MSIKEQTLMTPYLQFDRNQWAALRDSVPMTLSEDEIARLKGINEDLSLEEVAEIYLPLSR 60 MSIKEQ+LMTPYLQFDR+QWAALRDSVPMTL+EDEIA+LKGINEDLSLEEVAEIYLPLSR Sbjct: 16773 MSIKEQSLMTPYLQFDRSQWAALRDSVPMTLTEDEIAQLKGINEDLSLEEVAEIYLPLSR 16594 Query: 61 LLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRR 120 LLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRR Sbjct: 16593 LLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRR 16414 Query: 121 VELITTDGFLHPNQVLKERGLMKKKGFPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIY 180 VELITTDGFLHPNQVLKERGLMKKKGFPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIY Sbjct: 16413 VELITTDGFLHPNQVLKERGLMKKKGFPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIY 16234 Query: 181 DVIPDGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWY 240 DVIP+GDKTV QPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPE+LLQTWY Sbjct: 16233 DVIPEGDKTVAQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEELLQTWY 16054 Query: 241 INRFLKFREGAFTDPDSYFHNYAKLTKEEAIKTAMTLWKEINWLNLKQNILPTRERASLI 300 INRFLKFREGAFTDPDSYFHNYAKL+KEEA+ TA +LWKEINWLNLKQNILPTRERASLI Sbjct: 16053 INRFLKFREGAFTDPDSYFHNYAKLSKEEAVNTATSLWKEINWLNLKQNILPTRERASLI 15874 Query: 301 LTKSANHAVEEVRLRK 316 +TKSANHAVE+VRLRK Sbjct: 15873 MTKSANHAVEQVRLRK 15826 >embl|AE006212|AE006212 Pasteurella multocida subsp. multocida str. Pm70 section 179 of 204 of the complete genome. Length = 13738 Score = 401 bits (1030), Expect = e-112 Identities = 199/308 (64%), Positives = 247/308 (80%) Frame = +1 Query: 9 MTPYLQFDRNQWAALRDSVPMTLSEDEIARLKGINEDLSLEEVAEIYLPLSRLLNFYISS 68 +TP+L F R QWA LR SVP+TL+E ++ L GINE+LSL+EV IYLPL RL+N+YI Sbjct: 2098 LTPFLSFSREQWAELRKSVPLTLTEQDLKPLLGINEELSLDEVRTIYLPLVRLINYYIEE 2277 Query: 69 NLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDG 128 ++RQ V+ +FLG N ++PYIISIAGSVAVGKST+AR+LQ+LLS+WPE R+V+LITTDG Sbjct: 2278 RIQRQQVMNRFLGVNPDKVPYIISIAGSVAVGKSTSARILQSLLSQWPERRKVDLITTDG 2457 Query: 129 FLHPNQVLKERGLMKKKGFPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIPDGDK 188 FL+P L++ L+ KKGFP SYD RLV+F++D+KSG P V+APVYSHLIYD++PD Sbjct: 2458 FLYPLAKLQQDNLLHKKGFPVSYDTARLVRFLADIKSGKPKVSAPVYSHLIYDIVPDQFD 2637 Query: 189 TVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINRFLKFR 248 V QPDILILEGLNVLQ+G FVSDFVDFSIYVDA EDLL+ WYI+RFLKFR Sbjct: 2638 VVDQPDILILEGLNVLQTG----DRSSQTFVSDFVDFSIYVDADEDLLKAWYISRFLKFR 2805 Query: 249 EGAFTDPDSYFHNYAKLTKEEAIKTAMTLWKEINWLNLKQNILPTRERASLILTKSANHA 308 + AF+DP+SYF +YA L++ EAI TA +W EIN LNL++NILPTRERA+LILTK +HA Sbjct: 2806 QSAFSDPNSYFKHYATLSEPEAISTAGRIWDEINGLNLRENILPTRERANLILTKGTDHA 2985 Query: 309 VEEVRLRK 316 VE V+LRK Sbjct: 2986 VELVKLRK 3009 >embl|AE006134|AE006134 Pasteurella multocida subsp. multocida str. Pm70 section 101 of 204 of the complete genome. Length = 11667 Score = 46.2 bits (108), Expect = 1e-05 Identities = 45/160 (28%), Positives = 70/160 (43%), Gaps = 1/160 (0%) Frame = -2 Query: 90 IISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLMKKK-GFP 148 II+IAG+ A GKS A + L + +I+ D + L +K P Sbjct: 11480 IIAIAGASASGKSLIASTVHRELCDELGCEEIGIISEDSYYKDQSHLDMEDRIKTNYDHP 11301 Query: 149 ESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGM 208 S D H L++ + LKSG P V PVYS+ + + + ++ILEG+ +L Sbjct: 11300 NSMDRHLLIEHLKALKSGQP-VDIPVYSY-VEHTRTNQVQHFEPKKVIILEGILLLTDEK 11127 Query: 209 DYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINRFLKFR 248 + D V S++VD P D+ + R +K R Sbjct: 11126 ----------LRDEVSVSVFVDTPLDICFIRRLQRDMKER 11037 >AE008794 AE006468 |AE008794| Salmonella typhimurium LT2, section 98 of 220 of the complete genome. Length = 26591 Score = 40.8 bits (94), Expect = 5e-04 Identities = 46/179 (25%), Positives = 74/179 (41%), Gaps = 1/179 (0%) Frame = -2 Query: 90 IISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLK-ERGLMKKKGFP 148 II IAG+ A GKS A L L + +I D + L E + P Sbjct: 9340 IIGIAGASASGKSLIASTLYRELREQVGDEHIGVIPEDSYYKDQSHLSMEERVKTNYDHP 9161 Query: 149 ESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGM 208 + D L + + LK G + PVYS++ + + + + V ++ILEG+ +L Sbjct: 9160 NAMDHSLLFQHLQALKRG-SAIELPVYSYVEHTRMQETVR-VEPKKVIILEGILLLTDAR 8987 Query: 209 DYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLTK 267 + + ++FSI+VD P D+ I R + R + DS Y K + Sbjct: 8986 ----------LREEMNFSIFVDTPLDICLMRRIKRDVNERGRSM---DSVMAQYQKTVR 8849 Database: 3g Posted date: Dec 24, 2008 5:22 AM Number of letters in database: 12,243,887 Number of sequences in database: 884 Lambda K H 0.320 0.136 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 884 Number of Hits to DB: 4,316,362 Number of extensions: 59845 Number of successful extensions: 324 Number of sequences better than 1.0e-03: 4 Number of HSP's gapped: 321 Number of HSP's successfully gapped: 4 Length of query: 316 Length of database: 4,081,295 Length adjustment: 93 Effective length of query: 223 Effective length of database: 3,999,083 Effective search space: 891795509 Effective search space used: 891795509 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 46 (22.3 bits)