BLASTN 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= M36321 M36321.1 Escherichia coli rts gene, complete cds. (1011 letters) Database: 3g 884 sequences; 12,243,887 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AE008893 AE006468 |AE008893| Salmonella typhimurium LT2, section... 444 e-124 embl|AE006212|AE006212 Pasteurella multocida subsp. multocida st... 46 2e-04 >AE008893 AE006468 |AE008893| Salmonella typhimurium LT2, section 197 of 220 of the complete genome. Length = 20178 Score = 444 bits (224), Expect = e-124 Identities = 674/824 (81%) Strand = Plus / Minus Query: 46 gccagaaacatgcttatgagtataaaagagcaaacgttaatgacgccttacctacagttt 105 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 16788 gccagaaacatgcttatgagtataaaagagcaatcgttaatgacgccttacctacagttt 16729 Query: 106 gaccgcaaccagtgggcagctctgcgtgattccgtacctatgacgttatcggaagatgag 165 || |||| ||||||||| || || || ||||| || || ||||| | | || |||||| Sbjct: 16728 gatcgcagccagtgggctgcgcttcgcgattctgtgccgatgaccctgaccgaggatgag 16669 Query: 166 atcgcccgtctcaaaggtattaatgaagatctctcgttagaagaagttgccgagatctat 225 ||||| | | ||||| |||||||||||| | ||| | ||||||||||| || || ||| Sbjct: 16668 atcgcgcagttaaaaggcattaatgaagatttatcgctggaagaagttgcagaaatatat 16609 Query: 226 ttacctttgtcacgtttgctgaacttctatataagctcgaatctgcgccgtcaggcagtt 285 |||||| | || |||||||| || |||||||| || || |||||||| |||||||| || Sbjct: 16608 ttacctctctcccgtttgctaaatttctatatcagttcaaatctgcgtcgtcaggctgtc 16549 Query: 286 ctggaacagtttcttggtaccaacgggcaacgcattccttacattatcagtattgctggc 345 |||||||||||||| || || ||||| || || || |||||||| |||||||| || ||| Sbjct: 16548 ctggaacagtttctgggcactaacggccagcgaatcccttacatcatcagtatcgcgggc 16489 Query: 346 agtgtcgcggtggggaaaagtacaaccgcccgtgtattgcaggcgctattaagccgttgg 405 || ||||| ||||| ||||| || || || || || |||| ||| | | || || ||| Sbjct: 16488 agcgtcgcagtgggtaaaagcacgacagcacgcgttctgcaagcgttgctgagtcgctgg 16429 Query: 406 ccggaacatcgtcgtgttgaactgatcactacagatggcttccttcaccctaatcaggtt 465 |||||||| || ||||||||| |||| || ||||| |||||||| ||||| || ||||| Sbjct: 16428 ccggaacaccgccgtgttgaattgattaccacagacggcttcctccacccaaaccaggtg 16369 Query: 466 ctgaaagaacgtggtctgatgaagaagaaaggcttcccggaatcgtatgatatgcatcgc 525 |||||||||| || | |||||||| || || ||||| ||||||||||||||||| || Sbjct: 16368 ttgaaagaacgcgggttaatgaagaaaaaggggttccccgaatcgtatgatatgcaccga 16309 Query: 526 ctggtgaagtttgtttccgatctcaaatccggcgtgccaaacgttacagcacctgtttac 585 |||||||| || ||||| || ||||| || ||||| || ||||| || || || || || Sbjct: 16308 ctggtgaaattcgtttctgacctcaagtcgggcgtaccgaacgtgacggcgccagtctat 16249 Query: 586 tcacatcttatttatgatgtgatcccggatggagataaaacggttgttcagcctgatatt 645 || ||| | ||||| ||||| || || || || |||||||| || | |||||||||||| Sbjct: 16248 tctcatttgatttacgatgttattcctgaaggggataaaaccgtcgctcagcctgatata 16189 Query: 646 ttaattcttgaagggttaaatgtcttacagagcgggatggattatccacacgatccacat 705 || ||||||||||| || ||||| ||||| ||||| ||||||||||| |||||||| ||| Sbjct: 16188 ttgattcttgaaggtttgaatgttttacaaagcggtatggattatcctcacgatccgcat 16129 Query: 706 catgtatttgtttctgattttgtcgatttttcgatatatgttgatgcaccggaagactta 765 ||||||||||| |||||||| || ||||| || || || || ||||| || ||||| | Sbjct: 16128 catgtatttgtctctgatttcgttgatttctctatttacgtggatgcgccagaagaactt 16069 Query: 766 cttcagacatggtatatcaaccgttttctgaaattccgcgaaggggcttttaccgacccg 825 |||||||| ||||||||||| || || |||||||||||||||||||| |||||||| || Sbjct: 16068 cttcagacgtggtatatcaatcgcttcctgaaattccgcgaaggggcgtttaccgatcct 16009 Query: 826 gattcctattttcataactacgcgaaattaactaaagaagaagc 869 || || ||||| || || || ||||||||| ||||||||||||| Sbjct: 16008 gactcttatttccacaattatgcgaaattatctaaagaagaagc 15965 >embl|AE006212|AE006212 Pasteurella multocida subsp. multocida str. Pm70 section 179 of 204 of the complete genome. Length = 13738 Score = 46.1 bits (23), Expect = 2e-04 Identities = 35/39 (89%) Strand = Plus / Plus Query: 715 gtttctgattttgtcgatttttcgatatatgttgatgca 753 |||||||||||||| |||||||| || ||||| |||||| Sbjct: 2716 gtttctgattttgttgatttttctatttatgtggatgca 2754 Database: 3g Posted date: Dec 24, 2008 5:22 AM Number of letters in database: 12,243,887 Number of sequences in database: 884 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 884 Number of Hits to DB: 113,023 Number of extensions: 5750 Number of successful extensions: 36 Number of sequences better than 1.0e-03: 2 Number of HSP's gapped: 36 Number of HSP's successfully gapped: 4 Length of query: 1011 Length of database: 12,243,887 Length adjustment: 17 Effective length of query: 994 Effective length of database: 12,228,859 Effective search space: 12155485846 Effective search space used: 12155485846 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 15 (30.2 bits) S2: 22 (44.1 bits)