TBLASTN 2.2.15 [Oct-15-2006]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= COAA_ECOLI P0A6I3 RecName: Full=Pantothenate kinase;
EC=2.7.1.33; AltName: Full=Pantothenic acid kinase; AltName: Full=Rts
protein;
         (316 letters)

Database: pm 
           204 sequences; 2,269,587 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

embl|AE006212|AE006212 Pasteurella multocida subsp. multocida st...   401   e-113
embl|AE006134|AE006134 Pasteurella multocida subsp. multocida st...    46   2e-06

>embl|AE006212|AE006212 Pasteurella multocida subsp. multocida str.
            Pm70 section 179 of 204 of the complete genome.
          Length = 13738

 Score =  401 bits (1030), Expect = e-113
 Identities = 199/308 (64%), Positives = 247/308 (80%)
 Frame = +1

Query: 9    MTPYLQFDRNQWAALRDSVPMTLSEDEIARLKGINEDLSLEEVAEIYLPLSRLLNFYISS 68
            +TP+L F R QWA LR SVP+TL+E ++  L GINE+LSL+EV  IYLPL RL+N+YI  
Sbjct: 2098 LTPFLSFSREQWAELRKSVPLTLTEQDLKPLLGINEELSLDEVRTIYLPLVRLINYYIEE 2277

Query: 69   NLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDG 128
             ++RQ V+ +FLG N  ++PYIISIAGSVAVGKST+AR+LQ+LLS+WPE R+V+LITTDG
Sbjct: 2278 RIQRQQVMNRFLGVNPDKVPYIISIAGSVAVGKSTSARILQSLLSQWPERRKVDLITTDG 2457

Query: 129  FLHPNQVLKERGLMKKKGFPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIPDGDK 188
            FL+P   L++  L+ KKGFP SYD  RLV+F++D+KSG P V+APVYSHLIYD++PD   
Sbjct: 2458 FLYPLAKLQQDNLLHKKGFPVSYDTARLVRFLADIKSGKPKVSAPVYSHLIYDIVPDQFD 2637

Query: 189  TVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINRFLKFR 248
             V QPDILILEGLNVLQ+G          FVSDFVDFSIYVDA EDLL+ WYI+RFLKFR
Sbjct: 2638 VVDQPDILILEGLNVLQTG----DRSSQTFVSDFVDFSIYVDADEDLLKAWYISRFLKFR 2805

Query: 249  EGAFTDPDSYFHNYAKLTKEEAIKTAMTLWKEINWLNLKQNILPTRERASLILTKSANHA 308
            + AF+DP+SYF +YA L++ EAI TA  +W EIN LNL++NILPTRERA+LILTK  +HA
Sbjct: 2806 QSAFSDPNSYFKHYATLSEPEAISTAGRIWDEINGLNLRENILPTRERANLILTKGTDHA 2985

Query: 309  VEEVRLRK 316
            VE V+LRK
Sbjct: 2986 VELVKLRK 3009


>embl|AE006134|AE006134 Pasteurella multocida subsp. multocida str. Pm70
             section 101 of 204 of the complete genome.
          Length = 11667

 Score = 46.2 bits (108), Expect = 2e-06
 Identities = 45/160 (28%), Positives = 70/160 (43%), Gaps = 1/160 (0%)
 Frame = -2

Query: 90    IISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLMKKK-GFP 148
             II+IAG+ A GKS  A  +   L        + +I+ D +      L     +K     P
Sbjct: 11480 IIAIAGASASGKSLIASTVHRELCDELGCEEIGIISEDSYYKDQSHLDMEDRIKTNYDHP 11301

Query: 149   ESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGM 208
              S D H L++ +  LKSG P V  PVYS+ +     +  +      ++ILEG+ +L    
Sbjct: 11300 NSMDRHLLIEHLKALKSGQP-VDIPVYSY-VEHTRTNQVQHFEPKKVIILEGILLLTDEK 11127

Query: 209   DYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINRFLKFR 248
                       + D V  S++VD P D+     + R +K R
Sbjct: 11126 ----------LRDEVSVSVFVDTPLDICFIRRLQRDMKER 11037


  Database: pm
    Posted date:  Dec 24, 2008  4:59 AM
  Number of letters in database: 2,269,587
  Number of sequences in database:  204
  
Lambda     K      H
   0.320    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 204
Number of Hits to DB: 778,346
Number of extensions: 11329
Number of successful extensions: 66
Number of sequences better than 1.0e-03: 2
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 2
Length of query: 316
Length of database: 756,529
Length adjustment: 82
Effective length of query: 234
Effective length of database: 739,801
Effective search space: 173113434
Effective search space used: 173113434
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)