RID: 31WVWN5R013 Job Title:Capsid protein p30 Program: BLASTP Query: Capsid protein p30 ID: lcl|Query_6537410(amino acid) Length: 248 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Feline leuke... NA 11768 505 505 100% 2e-179 100.00 506 P10262.3 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Feline leuke... NA 11768 506 506 100% 8e-179 100.00 580 P0DOH3.1 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Feline sarco... NA 11778 498 498 100% 3e-177 98.39 459 P03340.2 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Feline sarco... NA 11778 499 499 100% 1e-176 98.39 536 P0DOH2.1 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Feline leuke... NA 11768 508 508 100% 9e-168 100.00 1712 P10273.2 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Baboon endog... NA 11764 335 335 89% 2e-112 71.75 537 P03341.4 RecName: Full=Gag polyprotein; Short=Pr65gag; AltName: Full=Co... Moloney muri... NA 928306 332 332 100% 9e-111 63.50 538 P03332.4 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Cas-Br-E mur... NA 11792 331 331 100% 1e-110 63.88 536 P27460.3 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Friend murin... NA 11797 330 330 100% 5e-110 66.54 538 P26806.3 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... HoMuLV murin... NA 11799 329 329 100% 6e-110 63.88 540 P21435.3 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Cas-Br-E mur... NA 11792 331 331 100% 2e-109 63.88 624 P0DOH4.1 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Friend murin... NA 11797 329 329 100% 7e-109 66.54 626 P0DOH5.1 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Moloney muri... NA 11809 327 327 100% 8e-109 61.98 538 P03334.3 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Moloney muri... NA 882209 329 329 100% 1e-108 62.74 626 Q8UN02.2 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Friend murin... NA 11796 326 326 100% 1e-108 63.88 539 P26807.3 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Murine leuke... NA 31688 325 325 100% 2e-108 63.88 536 P29168.3 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Murine leuke... NA 31687 324 324 100% 8e-108 65.78 537 P29167.3 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Duplan murin... NA 11794 323 323 100% 1e-107 63.12 529 P23090.3 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... AKR (endogen... NA 11791 323 323 100% 1e-107 63.12 537 P03336.3 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Friend murin... NA 11796 325 325 100% 3e-107 63.88 627 P0DOH0.1 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... AKR (endogen... NA 11791 324 324 100% 8e-107 63.12 625 P0DOG8.1 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Radiation mu... NA 11787 321 321 100% 1e-106 63.50 537 P11269.3 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Moloney muri... NA 31691 318 318 87% 2e-106 69.72 468 P32594.3 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Gardner-Arns... NA 11774 313 313 60% 3e-106 100.00 348 P03337.2 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Gardner-Arns... NA 11774 314 314 60% 2e-105 100.00 425 P0DOH1.1 RecName: Full=Gag polyprotein; Short=Pr65gag; AltName: Full=Co... Xenotropic M... NA 373193 318 318 87% 2e-105 69.72 536 Q27ID9.1 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Friend murin... NA 11798 317 317 87% 3e-105 70.64 538 P26805.3 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Baboon endog... NA 11764 336 336 92% 4e-105 71.18 1727 P10272.2 RecName: Full=Gag polyprotein; Short=Pr65gag; AltName: Full=Co... Xenotropic M... NA 356663 315 315 87% 2e-104 69.27 536 Q2F7J2.1 RecName: Full=Gag polyprotein; Short=Pr65gag; AltName: Full=Co... Xenotropic M... NA 356664 315 315 87% 2e-104 69.27 536 Q2F7I9.1 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Friend murin... NA 11798 316 316 87% 8e-104 70.64 626 P0DOH6.1 RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contain... Cas-Br-E mur... NA 11792 332 332 100% 2e-103 63.88 1733 P08361.2 RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contain... Moloney muri... NA 928306 332 332 100% 2e-103 63.50 1738 P03355.5 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Friend murin... NA 11797 330 330 100% 6e-103 66.54 1738 P26809.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Friend murin... NA 11796 327 327 100% 9e-102 63.88 1739 P26810.2 RecName: Full=Gag-pol polyprotein; Contains: RecName:... Murine leuke... NA 31687 325 325 100% 6e-101 65.78 1734 Q7SVK7.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... AKR (endogen... NA 11791 324 324 100% 1e-100 63.12 1734 P03356.3 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Feline sarco... NA 11777 298 298 57% 4e-100 100.00 340 P04322.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Radiation mu... NA 11787 322 322 100% 6e-100 63.50 1734 P11227.2 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Feline sarco... NA 11777 299 299 57% 1e-99 100.00 414 P0DP83.1 RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contain... Xenotropic M... NA 373193 318 318 87% 9e-99 69.72 1733 A1Z651.1 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Friend murin... NA 11798 318 318 87% 1e-98 70.64 1738 P26808.2 RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contain... Xenotropic M... NA 356664 316 316 87% 7e-98 69.27 1733 Q2F7J0.1 RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contain... Xenotropic M... NA 356663 316 316 87% 8e-98 69.27 1733 Q2F7J3.1 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Gibbon ape l... NA 11840 295 295 83% 1e-96 65.22 520 P21416.3 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Woolly monke... NA 11970 293 293 83% 7e-96 64.73 521 P03330.4 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Koala retrov... NA 394239 290 290 83% 1e-94 65.22 521 Q9TTC2.3 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Gibbon ape l... NA 11840 295 295 87% 2e-90 62.95 1686 P21414.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Woolly monke... NA 11970 293 293 87% 4e-90 62.50 1687 P03359.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr125Pol;... Koala retrov... NA 394239 289 289 87% 1e-88 62.95 1687 Q9TTC1.2 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Snyder-Theil... NA 11780 211 211 40% 9e-67 100.00 297 P03338.2 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Snyder-Theil... NA 11780 212 212 40% 3e-66 100.00 371 P0DOG9.1 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Finkel-Biski... NA 353765 132 132 34% 7e-36 70.93 310 P29175.3 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Avian spleen... NA 11899 103 103 37% 4e-25 53.19 313 P03342.1 Alignments: >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Feline leukemia virus] Sequence ID: P10262.3 Length: 506 Range 1: 198 to 445 Score:505 bits(1301), Expect:2e-179, Method:Compositional matrix adjust., Identities:248/248(100%), Positives:248/248(100%), Gaps:0/248(0%) Query 1 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 60 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ Sbjct 198 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 257 Query 61 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 120 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ Sbjct 258 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 317 Query 121 LLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVIL 180 LLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVIL Sbjct 318 LLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVIL 377 Query 181 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNKRETPEEREERLWQRQEERDKKR 240 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNKRETPEEREERLWQRQEERDKKR Sbjct 378 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNKRETPEEREERLWQRQEERDKKR 437 Query 241 HKEMTKVL 248 HKEMTKVL Sbjct 438 HKEMTKVL 445 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [Feline leukemia virus] Sequence ID: P0DOH3.1 Length: 580 Range 1: 272 to 519 Score:506 bits(1303), Expect:8e-179, Method:Compositional matrix adjust., Identities:248/248(100%), Positives:248/248(100%), Gaps:0/248(0%) Query 1 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 60 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ Sbjct 272 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 331 Query 61 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 120 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ Sbjct 332 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 391 Query 121 LLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVIL 180 LLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVIL Sbjct 392 LLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVIL 451 Query 181 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNKRETPEEREERLWQRQEERDKKR 240 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNKRETPEEREERLWQRQEERDKKR Sbjct 452 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNKRETPEEREERLWQRQEERDKKR 511 Query 241 HKEMTKVL 248 HKEMTKVL Sbjct 512 HKEMTKVL 519 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-gag; Short=NC-gag [Feline sarcoma virus (STRAIN MCDONOUGH)] Sequence ID: P03340.2 Length: 459 Range 1: 198 to 445 Score:498 bits(1281), Expect:3e-177, Method:Compositional matrix adjust., Identities:244/248(98%), Positives:245/248(98%), Gaps:0/248(0%) Query 1 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 60 PLREGPNNRPQYWPFSASDLYNWK HNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ Sbjct 198 PLREGPNNRPQYWPFSASDLYNWKLHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 257 Query 61 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 120 ALLT EERQRVLLEARKQVPGEDGRPTQLPNVIDE FPLTRPNWDFATPAGREHLRLYRQ Sbjct 258 ALLTAEERQRVLLEARKQVPGEDGRPTQLPNVIDEAFPLTRPNWDFATPAGREHLRLYRQ 317 Query 121 LLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVIL 180 LLLAGLRGAARRPTNLAQVKQVVQGKEETPA+FLERLKEAYRMYTPYDPEDPGQAASVIL Sbjct 318 LLLAGLRGAARRPTNLAQVKQVVQGKEETPASFLERLKEAYRMYTPYDPEDPGQAASVIL 377 Query 181 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNKRETPEEREERLWQRQEERDKKR 240 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNKRETPEEREERLWQRQEERDKKR Sbjct 378 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNKRETPEEREERLWQRQEERDKKR 437 Query 241 HKEMTKVL 248 HKEMTKVL Sbjct 438 HKEMTKVL 445 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [Feline sarcoma virus (STRAIN MCDONOUGH)] Sequence ID: P0DOH2.1 Length: 536 Range 1: 275 to 522 Score:499 bits(1285), Expect:1e-176, Method:Compositional matrix adjust., Identities:244/248(98%), Positives:245/248(98%), Gaps:0/248(0%) Query 1 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 60 PLREGPNNRPQYWPFSASDLYNWK HNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ Sbjct 275 PLREGPNNRPQYWPFSASDLYNWKLHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 334 Query 61 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 120 ALLT EERQRVLLEARKQVPGEDGRPTQLPNVIDE FPLTRPNWDFATPAGREHLRLYRQ Sbjct 335 ALLTAEERQRVLLEARKQVPGEDGRPTQLPNVIDEAFPLTRPNWDFATPAGREHLRLYRQ 394 Query 121 LLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVIL 180 LLLAGLRGAARRPTNLAQVKQVVQGKEETPA+FLERLKEAYRMYTPYDPEDPGQAASVIL Sbjct 395 LLLAGLRGAARRPTNLAQVKQVVQGKEETPASFLERLKEAYRMYTPYDPEDPGQAASVIL 454 Query 181 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNKRETPEEREERLWQRQEERDKKR 240 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNKRETPEEREERLWQRQEERDKKR Sbjct 455 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNKRETPEEREERLWQRQEERDKKR 514 Query 241 HKEMTKVL 248 HKEMTKVL Sbjct 515 HKEMTKVL 522 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Feline leukemia virus] Sequence ID: P10273.2 Length: 1712 Range 1: 198 to 445 Score:508 bits(1307), Expect:9e-168, Method:Compositional matrix adjust., Identities:248/248(100%), Positives:248/248(100%), Gaps:0/248(0%) Query 1 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 60 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ Sbjct 198 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 257 Query 61 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 120 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ Sbjct 258 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 317 Query 121 LLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVIL 180 LLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVIL Sbjct 318 LLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVIL 377 Query 181 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNKRETPEEREERLWQRQEERDKKR 240 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNKRETPEEREERLWQRQEERDKKR Sbjct 378 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNKRETPEEREERLWQRQEERDKKR 437 Query 241 HKEMTKVL 248 HKEMTKVL Sbjct 438 HKEMTKVL 445 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Baboon endogenous virus strain M7] Sequence ID: P03341.4 Length: 537 Range 1: 232 to 454 Score:335 bits(860), Expect:2e-112, Method:Compositional matrix adjust., Identities:160/223(72%), Positives:187/223(83%), Gaps:0/223(0%) Query 7 NNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQALLTGE 66 N QYWPFSASDLYNWK+HNP FSQDP ALT+LIESIL+THQPTWDDCQQLLQ LLT E Sbjct 232 NRTIQYWPFSASDLYNWKTHNPSFSQDPQALTSLIESILLTHQPTWDDCQQLLQVLLTTE 291 Query 67 ERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQLLLAGL 126 ERQRVLLEARK VPG G PTQLPN IDE FPLTRP+WD+ T GRE LR+YRQ LLAGL Sbjct 292 ERQRVLLEARKNVPGPGGLPTQLPNEIDEGFPLTRPDWDYETAPGRESLRIYRQALLAGL 351 Query 127 RGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVILSFIYQS 186 +GA +RPTNLA+V+ + QGK+E+PAAF+ERL E +RMYTP+DPE P A+V +SFI Q+ Sbjct 352 KGAGKRPTNLAKVRTITQGKDESPAAFMERLLEGFRMYTPFDPEAPEHKATVAMSFIDQA 411 Query 187 SPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNKRETPEEREERL 229 + DI+ KLQRL+G+Q L +L++EAEK+YNKRETPEERE RL Sbjct 412 ALDIKGKLQRLDGIQTHGLQELVREAEKVYNKRETPEEREARL 454 >RecName: Full=Gag polyprotein; Short=Pr65gag; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Moloney murine leukemia virus isolate Shinnick] Sequence ID: P03332.4 Length: 538 Range 1: 216 to 478 Score:332 bits(850), Expect:9e-111, Method:Compositional matrix adjust., Identities:167/263(63%), Positives:201/263(76%), Gaps:15/263(5%) Query 1 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 60 PLR G N + QYWPFS+SDLYNWK++NP FS+DP LT LIES+L+THQPTWDDCQQLL Sbjct 216 PLRAGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLITHQPTWDDCQQLLG 275 Query 61 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 120 LLTGEE+QRVLLEARK V G+DGRPTQLPN +D FPL RP+WD+ T AGR HL YRQ Sbjct 276 TLLTGEEKQRVLLEARKAVRGDDGRPTQLPNEVDAAFPLERPDWDYTTQAGRNHLVHYRQ 335 Query 121 LLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVIL 180 LLLAGL+ A R PTNLA+VK + QG E+P+AFLERLKEAYR YTPYDPEDPGQ +V + Sbjct 336 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 395 Query 181 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNK---------------RETPEER 225 SFI+QS+PDI KL+RLE L+ TL DL++EAEKI+NK E E R Sbjct 396 SFIWQSAPDIGRKLERLEDLKNKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 455 Query 226 EERLWQRQEERDKKRHKEMTKVL 248 Q+++ERD++RH+EM+K+L Sbjct 456 RTEDEQKEKERDRRRHREMSKLL 478 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Cas-Br-E murine leukemia virus] Sequence ID: P27460.3 Length: 536 Range 1: 214 to 476 Score:331 bits(849), Expect:1e-110, Method:Compositional matrix adjust., Identities:168/263(64%), Positives:202/263(76%), Gaps:15/263(5%) Query 1 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 60 PLR G N + QYWPFS+SDLYNWK++NP FS+DP LT LIES+L+THQPTWDDCQQLL Sbjct 214 PLRSGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLLTHQPTWDDCQQLLG 273 Query 61 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 120 LLTGEE+QRVLLEARK V GEDGRPTQLPN I++ FPL RP+WD+ T GR HL LYRQ Sbjct 274 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNEINDAFPLERPDWDYNTQRGRNHLVLYRQ 333 Query 121 LLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVIL 180 LLLAGL+ A R PTNLA+VK + QG E+P+AFLERLKEAYR YTPYDPEDPGQ +V + Sbjct 334 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 393 Query 181 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNK---------------RETPEER 225 SFI+QS+PDI KL+RLE L+ TL DL++EAEKI+NK E E R Sbjct 394 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIKRETEEKEERR 453 Query 226 EERLWQRQEERDKKRHKEMTKVL 248 Q+++ERD++RH+EM+K+L Sbjct 454 RAEDEQKEKERDRRRHREMSKLL 476 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Friend murine leukemia virus (ISOLATE FB29)] Sequence ID: P26806.3 Length: 538 Range 1: 216 to 478 Score:330 bits(845), Expect:5e-110, Method:Compositional matrix adjust., Identities:175/263(67%), Positives:209/263(79%), Gaps:15/263(5%) Query 1 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 60 PLR G N + QYWPFS+SDLYNWK++NP FS+DP LT LIES+L+THQPTWDDCQQLL Sbjct 216 PLRLGGNGQYQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 275 Query 61 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 120 LLTGEE+QRVLLEARK V GEDGRPTQLPN I++ FPL RP+WD+ T GR HL YRQ Sbjct 276 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 335 Query 121 LLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVIL 180 LLLAGL+ A R PTNLA+VK + QG E+P+AFLERLKEAYR YTPYDPEDPGQ +V + Sbjct 336 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 395 Query 181 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNKRETPEEREERLW---------- 230 SFI+QS+PDI KL+RLE L+ TL DL++EAEKI+NKRETPEEREER+ Sbjct 396 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 455 Query 231 -----QRQEERDKKRHKEMTKVL 248 QR++ERD++RH+EM+K+L Sbjct 456 RAEDVQREKERDRRRHREMSKLL 478 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-gag; Short=NC-gag [HoMuLV murine leukemia virus] Sequence ID: P21435.3 Length: 540 Range 1: 218 to 480 Score:329 bits(844), Expect:6e-110, Method:Compositional matrix adjust., Identities:168/263(64%), Positives:203/263(77%), Gaps:15/263(5%) Query 1 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 60 PLR G N + QYWPFS++DLYNWK++NP FS+DP LT LIES+L+THQPTWDDCQQLL Sbjct 218 PLRTGGNGQLQYWPFSSADLYNWKNNNPSFSEDPGKLTALIESVLITHQPTWDDCQQLLG 277 Query 61 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 120 LLTGEE+QRVLLEARK V G DGRPTQLPN I++ FPL RP+WD+ TPAGR HL LYRQ Sbjct 278 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEINDAFPLERPDWDYTTPAGRNHLVLYRQ 337 Query 121 LLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVIL 180 LLLAGL+ A R PTNLA+VK + QG E+P+AFLERLKEAYR YTPYDPEDPGQ +V + Sbjct 338 LLLAGLQHAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 397 Query 181 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNK---------------RETPEER 225 SFI+QS+PDI KL+RLE L+ TL DL++EAE+I+NK E E R Sbjct 398 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAERIFNKRETPEEREERIRRETEEKEERR 457 Query 226 EERLWQRQEERDKKRHKEMTKVL 248 QR++ERD++RH+EM+K+L Sbjct 458 RAENEQREKERDRRRHREMSKLL 480 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [Cas-Br-E murine leukemia virus] Sequence ID: P0DOH4.1 Length: 624 Range 1: 302 to 564 Score:331 bits(848), Expect:2e-109, Method:Compositional matrix adjust., Identities:168/263(64%), Positives:202/263(76%), Gaps:15/263(5%) Query 1 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 60 PLR G N + QYWPFS+SDLYNWK++NP FS+DP LT LIES+L+THQPTWDDCQQLL Sbjct 302 PLRSGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLLTHQPTWDDCQQLLG 361 Query 61 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 120 LLTGEE+QRVLLEARK V GEDGRPTQLPN I++ FPL RP+WD+ T GR HL LYRQ Sbjct 362 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNEINDAFPLERPDWDYNTQRGRNHLVLYRQ 421 Query 121 LLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVIL 180 LLLAGL+ A R PTNLA+VK + QG E+P+AFLERLKEAYR YTPYDPEDPGQ +V + Sbjct 422 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 481 Query 181 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNK---------------RETPEER 225 SFI+QS+PDI KL+RLE L+ TL DL++EAEKI+NK E E R Sbjct 482 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIKRETEEKEERR 541 Query 226 EERLWQRQEERDKKRHKEMTKVL 248 Q+++ERD++RH+EM+K+L Sbjct 542 RAEDEQKEKERDRRRHREMSKLL 564 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [Friend murine leukemia virus (ISOLATE FB29)] Sequence ID: P0DOH5.1 Length: 626 Range 1: 304 to 566 Score:329 bits(844), Expect:7e-109, Method:Compositional matrix adjust., Identities:175/263(67%), Positives:209/263(79%), Gaps:15/263(5%) Query 1 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 60 PLR G N + QYWPFS+SDLYNWK++NP FS+DP LT LIES+L+THQPTWDDCQQLL Sbjct 304 PLRLGGNGQYQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 363 Query 61 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 120 LLTGEE+QRVLLEARK V GEDGRPTQLPN I++ FPL RP+WD+ T GR HL YRQ Sbjct 364 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 423 Query 121 LLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVIL 180 LLLAGL+ A R PTNLA+VK + QG E+P+AFLERLKEAYR YTPYDPEDPGQ +V + Sbjct 424 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 483 Query 181 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNKRETPEEREERLW---------- 230 SFI+QS+PDI KL+RLE L+ TL DL++EAEKI+NKRETPEEREER+ Sbjct 484 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 543 Query 231 -----QRQEERDKKRHKEMTKVL 248 QR++ERD++RH+EM+K+L Sbjct 544 RAEDVQREKERDRRRHREMSKLL 566 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-gag; Short=NC-gag [Moloney murine sarcoma virus] Sequence ID: P03334.3 Length: 538 Range 1: 216 to 478 Score:327 bits(837), Expect:8e-109, Method:Compositional matrix adjust., Identities:163/263(62%), Positives:201/263(76%), Gaps:15/263(5%) Query 1 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 60 PLR G N + QYWPFS+SDLYNWK++NP FS+DP LT LIES+L+THQPTWDDCQQLL Sbjct 216 PLRTGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLITHQPTWDDCQQLLG 275 Query 61 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 120 LLTGEE+QRVLLEARK V G+DGRPTQLPN +D FPL RP+W++ T AGR HL YRQ Sbjct 276 TLLTGEEKQRVLLEARKAVRGDDGRPTQLPNEVDAAFPLERPDWEYTTQAGRNHLVHYRQ 335 Query 121 LLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVIL 180 LL+AGL+ A R PTNLA+VK + QG E+P+AFLERLKEAYR YTPYDPEDPGQ +V + Sbjct 336 LLIAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 395 Query 181 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNK---------------RETPEER 225 SFI+QS+PDI KL+RLE L+ TL DL++EAE+I+NK E E R Sbjct 396 SFIWQSAPDIGRKLERLEDLRNKTLGDLVREAERIFNKRETPEEREERIRREREEKEERR 455 Query 226 EERLWQRQEERDKKRHKEMTKVL 248 Q+++ERD++RH+EM+++L Sbjct 456 RTEDEQKEKERDRRRHREMSRLL 478 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80; Contains: RecName: Full=Nextended-MA-p12; Contains: RecName: Full=CA-NC [Moloney murine leukemia virus neuropathogenic variant ts1-92b] Sequence ID: Q8UN02.2 Length: 626 Range 1: 304 to 566 Score:329 bits(843), Expect:1e-108, Method:Compositional matrix adjust., Identities:165/263(63%), Positives:201/263(76%), Gaps:15/263(5%) Query 1 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 60 PLR G N + QYWPFS+SDLYNWK++NP FS+DP LT LIES+L+THQPTWDDCQQLL Sbjct 304 PLRTGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLITHQPTWDDCQQLLG 363 Query 61 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 120 LLTGEE+QRVLLEARK V G+DGRPTQLPN +D FPL RP+W++ T AGR HL YRQ Sbjct 364 TLLTGEEKQRVLLEARKAVRGDDGRPTQLPNEVDAAFPLERPDWEYTTQAGRNHLVQYRQ 423 Query 121 LLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVIL 180 LLLAGL+ A R PTNLA+VK + QG E+P+AFLERLKEAYR YTPYDPEDPGQ +V + Sbjct 424 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 483 Query 181 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNK---------------RETPEER 225 SFI+QS+PDI KL+RLE L+ TL DL++EAE+I+NK E E R Sbjct 484 SFIWQSAPDIGRKLERLEDLKNKTLGDLVREAERIFNKRETPEEREERIRRETEEKEERR 543 Query 226 EERLWQRQEERDKKRHKEMTKVL 248 Q+++ERD++RH+EM+K+L Sbjct 544 RTEDEQKEKERDRRRHREMSKLL 566 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Friend murine leukemia virus (ISOLATE 57)] Sequence ID: P26807.3 Length: 539 Range 1: 217 to 479 Score:326 bits(835), Expect:1e-108, Method:Compositional matrix adjust., Identities:168/263(64%), Positives:202/263(76%), Gaps:15/263(5%) Query 1 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 60 PLR+G N + QYWPFS+SDLYNWK++NP FS+DP LT LIES+L+THQPTWDDCQQLL Sbjct 217 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 276 Query 61 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 120 LLTGEE+QRVLLEARK V GEDGRPTQLPN I++ FPL RP+WD+ T GR HL YRQ Sbjct 277 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 336 Query 121 LLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVIL 180 LLLAGL+ A R PTNLA+VK + QG E+P+AFLERLKEAYR YTPYDPEDPGQ +V + Sbjct 337 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 396 Query 181 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNK---------------RETPEER 225 SFI+QS+PDI KL+RLE L+ TL DL++EAEKI+NK E E R Sbjct 397 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 456 Query 226 EERLWQRQEERDKKRHKEMTKVL 248 QR++ERD++RH+EM+K+L Sbjct 457 RAEDEQREKERDRRRHREMSKLL 479 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-gag; Short=NC-gag [Murine leukemia virus (strain DEF27)] Sequence ID: P29168.3 Length: 536 Range 1: 214 to 476 Score:325 bits(834), Expect:2e-108, Method:Compositional matrix adjust., Identities:168/263(64%), Positives:199/263(75%), Gaps:15/263(5%) Query 1 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 60 PLR G N + QYWPFS+SDLYNWK++NP FS+DP LT LIES+L THQPTWDDCQQLL Sbjct 214 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 273 Query 61 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 120 LLTGEE+QRVLLEARK V G DGRPTQLPN ++ FPL RP+WD+ TP GR HL LYRQ Sbjct 274 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 333 Query 121 LLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVIL 180 LLLAGL+ A R PTNLA+VK + QG E+P+AFLERLKEAYR YTPYDPEDPGQ +V + Sbjct 334 LLLAGLQNAGRSPTNLAKVKGITQGPSESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 393 Query 181 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNK---------------RETPEER 225 SFI+QS+PDI KL+RLE L+ TL DL++EAEKI+NK E E R Sbjct 394 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 453 Query 226 EERLWQRQEERDKKRHKEMTKVL 248 QR++ERD++RH+EM+K L Sbjct 454 RAEDEQREKERDRRRHREMSKFL 476 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Murine leukemia virus (strain BM5 ECO)] Sequence ID: P29167.3 Length: 537 Range 1: 215 to 477 Score:324 bits(830), Expect:8e-108, Method:Compositional matrix adjust., Identities:173/263(66%), Positives:206/263(78%), Gaps:15/263(5%) Query 1 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 60 PLR G N + QYWPFS+SDLYNWK++NP FS+DP LT LIES+L THQPTWDDCQQLL Sbjct 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 274 Query 61 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 120 LLTGEE+QRVLLEARK V G DGRPTQLPN ++ FPL RP+WD+ TP GR HL LYRQ Sbjct 275 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 334 Query 121 LLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVIL 180 LLLAGL+ A R PTNLA+VK + QG E+P+AFLERLKEAYR YTPYDPEDPGQ +V + Sbjct 335 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 394 Query 181 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNKRETPEEREERLW---------- 230 SFI+QS+P I KL+RLE L+ TL DL++EAEKI+NKRETPEEREER+ Sbjct 395 SFIWQSAPAIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 454 Query 231 -----QRQEERDKKRHKEMTKVL 248 QR++ERD++R +EM+K+L Sbjct 455 RAGDEQREKERDRRRQREMSKLL 477 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-gag; Short=NC-gag [Duplan murine leukemia virus] Sequence ID: P23090.3 Length: 529 Range 1: 207 to 469 Score:323 bits(829), Expect:1e-107, Method:Compositional matrix adjust., Identities:166/263(63%), Positives:200/263(76%), Gaps:15/263(5%) Query 1 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 60 PLR G + + QYWPFS+SDLYNWK++NP FS+DP LT LIES+L THQPTWDDCQQLL Sbjct 207 PLRMGGDGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 266 Query 61 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 120 LLTGEE+QRVLLEARK V G DGRPTQLPN ++ FPL RP+W+++TP GR HL LYRQ Sbjct 267 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWNYSTPEGRNHLVLYRQ 326 Query 121 LLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVIL 180 LLLAGL A R PTNLA+VK++ QG E+P+AFLERLKEAYR YTPYDPEDPGQ +V + Sbjct 327 LLLAGLHNAGRSPTNLAKVKRITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 386 Query 181 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNK---------------RETPEER 225 SFI+QS+PDI KL+RLE L+ TL DL++EAEKI+NK E E R Sbjct 387 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 446 Query 226 EERLWQRQEERDKKRHKEMTKVL 248 QR++ERD++RH+EM+K L Sbjct 447 RAEDEQREKERDRRRHREMSKFL 469 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-gag; Short=NC-gag [AKR (endogenous) murine leukemia virus] Sequence ID: P03336.3 Length: 537 Range 1: 215 to 477 Score:323 bits(829), Expect:1e-107, Method:Compositional matrix adjust., Identities:166/263(63%), Positives:199/263(75%), Gaps:15/263(5%) Query 1 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 60 PLR G N + QYWPFS+SDLYNWK++NP FS+DP LT LIES+L THQPTWDDCQQLL Sbjct 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 274 Query 61 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 120 LLTGEE+QRVLLEARK V G DGRPTQLPN +D FPL RP+WD+ T GR HL LYRQ Sbjct 275 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTQRGRNHLVLYRQ 334 Query 121 LLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVIL 180 LLLAGL+ A R PTNLA+VK + QG E+P+AFLERLKEAYR YTPYDPEDPGQ +V + Sbjct 335 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 394 Query 181 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNK---------------RETPEER 225 SFI+QS+PDI KL+RLE L+ TL DL++EAE+I+NK E E R Sbjct 395 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAERIFNKRETPEEREERVRRETEEKEERR 454 Query 226 EERLWQRQEERDKKRHKEMTKVL 248 Q+++ERD++RH+EM+K+L Sbjct 455 RAEEEQKEKERDRRRHREMSKLL 477 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [Friend murine leukemia virus (ISOLATE 57)] Sequence ID: P0DOH0.1 Length: 627 Range 1: 305 to 567 Score:325 bits(834), Expect:3e-107, Method:Compositional matrix adjust., Identities:168/263(64%), Positives:202/263(76%), Gaps:15/263(5%) Query 1 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 60 PLR+G N + QYWPFS+SDLYNWK++NP FS+DP LT LIES+L+THQPTWDDCQQLL Sbjct 305 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 364 Query 61 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 120 LLTGEE+QRVLLEARK V GEDGRPTQLPN I++ FPL RP+WD+ T GR HL YRQ Sbjct 365 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 424 Query 121 LLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVIL 180 LLLAGL+ A R PTNLA+VK + QG E+P+AFLERLKEAYR YTPYDPEDPGQ +V + Sbjct 425 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 484 Query 181 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNK---------------RETPEER 225 SFI+QS+PDI KL+RLE L+ TL DL++EAEKI+NK E E R Sbjct 485 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 544 Query 226 EERLWQRQEERDKKRHKEMTKVL 248 QR++ERD++RH+EM+K+L Sbjct 545 RAEDEQREKERDRRRHREMSKLL 567 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [AKR (endogenous) murine leukemia virus] Sequence ID: P0DOG8.1 Length: 625 Range 1: 303 to 565 Score:324 bits(830), Expect:8e-107, Method:Compositional matrix adjust., Identities:166/263(63%), Positives:199/263(75%), Gaps:15/263(5%) Query 1 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 60 PLR G N + QYWPFS+SDLYNWK++NP FS+DP LT LIES+L THQPTWDDCQQLL Sbjct 303 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 362 Query 61 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 120 LLTGEE+QRVLLEARK V G DGRPTQLPN +D FPL RP+WD+ T GR HL LYRQ Sbjct 363 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTQRGRNHLVLYRQ 422 Query 121 LLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVIL 180 LLLAGL+ A R PTNLA+VK + QG E+P+AFLERLKEAYR YTPYDPEDPGQ +V + Sbjct 423 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 482 Query 181 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNK---------------RETPEER 225 SFI+QS+PDI KL+RLE L+ TL DL++EAE+I+NK E E R Sbjct 483 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAERIFNKRETPEEREERVRRETEEKEERR 542 Query 226 EERLWQRQEERDKKRHKEMTKVL 248 Q+++ERD++RH+EM+K+L Sbjct 543 RAEEEQKEKERDRRRHREMSKLL 565 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Radiation murine leukemia virus] Sequence ID: P11269.3 Length: 537 Range 1: 215 to 477 Score:321 bits(822), Expect:1e-106, Method:Compositional matrix adjust., Identities:167/263(63%), Positives:198/263(75%), Gaps:15/263(5%) Query 1 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 60 PLR G N + QYWPFS+SDLYNWK++NP FS+DP LT LIES+L THQPTWDDCQQLL Sbjct 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 274 Query 61 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 120 LLTGEE+QRVLLEARK V G DGRPTQLPN ++ FPL RP+WD+ TP GR HL LYRQ Sbjct 275 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 334 Query 121 LLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVIL 180 LLLAGL+ A R PTNLA+VK + QG E+P+AFLERLKEAYR YTPYDPED GQ SV + Sbjct 335 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSM 394 Query 181 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNK---------------RETPEER 225 SFI+QS+PDI KL+RLE L+ TL DL++EAEKI+NK E E R Sbjct 395 SFIWQSAPDIGRKLERLEDLKSKTLRDLVREAEKIFNKRETPEEREERFRRETEENEERR 454 Query 226 EERLWQRQEERDKKRHKEMTKVL 248 QR++ERD++R +EM+K+L Sbjct 455 RAEDEQREKERDRRRQREMSKLL 477 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA [Moloney murine sarcoma virus (strain TS110)] Sequence ID: P32594.3 Length: 468 Range 1: 216 to 433 Score:318 bits(815), Expect:2e-106, Method:Compositional matrix adjust., Identities:152/218(70%), Positives:180/218(82%), Gaps:0/218(0%) Query 1 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 60 PLR G N + QYWPFS+SDLYNWKS+NP FS+DP LT LIES+L+THQPTWDDCQQLL Sbjct 216 PLRTGGNGQLQYWPFSSSDLYNWKSNNPSFSEDPGKLTALIESVLITHQPTWDDCQQLLG 275 Query 61 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 120 LLTGEE+QRVLLEARK V G+DGRPTQLPN +D FPL RP+W++ T AGR HL YRQ Sbjct 276 TLLTGEEKQRVLLEARKAVRGDDGRPTQLPNEVDAAFPLERPDWEYTTQAGRNHLVHYRQ 335 Query 121 LLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVIL 180 LL+AGL+ A R PTNLA+VK + QG E+P+AFLERLKEAYR YTPYDPEDPGQ +V + Sbjct 336 LLIAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 395 Query 181 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNK 218 SFI+QS+PDI KL+RLE L+ TL DL++EAE+I+NK Sbjct 396 SFIWQSAPDIGRKLERLEDLRNKTLGDLVREAERIFNK 433 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA [Gardner-Arnstein feline sarcoma virus] Sequence ID: P03337.2 Length: 348 Range 1: 198 to 348 Score:313 bits(803), Expect:3e-106, Method:Compositional matrix adjust., Identities:151/151(100%), Positives:151/151(100%), Gaps:0/151(0%) Query 1 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 60 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ Sbjct 198 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 257 Query 61 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 120 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ Sbjct 258 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 317 Query 121 LLLAGLRGAARRPTNLAQVKQVVQGKEETPA 151 LLLAGLRGAARRPTNLAQVKQVVQGKEETPA Sbjct 318 LLLAGLRGAARRPTNLAQVKQVVQGKEETPA 348 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [Gardner-Arnstein feline sarcoma virus] Sequence ID: P0DOH1.1 Length: 425 Range 1: 275 to 425 Score:314 bits(805), Expect:2e-105, Method:Compositional matrix adjust., Identities:151/151(100%), Positives:151/151(100%), Gaps:0/151(0%) Query 1 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 60 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ Sbjct 275 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 334 Query 61 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 120 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ Sbjct 335 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 394 Query 121 LLLAGLRGAARRPTNLAQVKQVVQGKEETPA 151 LLLAGLRGAARRPTNLAQVKQVVQGKEETPA Sbjct 395 LLLAGLRGAARRPTNLAQVKQVVQGKEETPA 425 >RecName: Full=Gag polyprotein; Short=Pr65gag; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10; Short=NC-gag [Xenotropic MuLV-related virus VP62] Sequence ID: Q27ID9.1 Length: 536 Range 1: 214 to 431 Score:318 bits(814), Expect:2e-105, Method:Compositional matrix adjust., Identities:152/218(70%), Positives:179/218(82%), Gaps:0/218(0%) Query 1 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 60 PLR G + + QYWPFS+SDLYNWK++NP FS+DP LT LIES+L+THQPTWDDCQQLL Sbjct 214 PLRMGGDGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLITHQPTWDDCQQLLG 273 Query 61 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 120 LLTGEE+QRVLLEARK V G DGRPTQLPN ++ FPL RP+WD+ T GR HL LYRQ Sbjct 274 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNAAFPLERPDWDYTTTEGRNHLVLYRQ 333 Query 121 LLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVIL 180 LLLAGL+ A R PTNLA+VK + QG E+P+AFLERLKEAYR YTPYDPEDPGQ +V + Sbjct 334 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 393 Query 181 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNK 218 SFI+QS+PDI KL+RLE L+ TL DL++EAEKI+NK Sbjct 394 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNK 431 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Friend murine leukemia virus (ISOLATE PVC-211)] Sequence ID: P26805.3 Length: 538 Range 1: 216 to 433 Score:317 bits(813), Expect:3e-105, Method:Compositional matrix adjust., Identities:154/218(71%), Positives:180/218(82%), Gaps:0/218(0%) Query 1 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 60 PLR G N + QYWPFS+SDLYNWK++NP FS+DP LT LIES+L+THQPTWDDCQQLL Sbjct 216 PLRLGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLLTHQPTWDDCQQLLG 275 Query 61 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 120 LLTGEE+QRVLLEARK V GEDGRPTQLPN I++ FPL RP+WD+ T GR HL YRQ Sbjct 276 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 335 Query 121 LLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVIL 180 LLLAGL+ A R PTNLA+VK + QG E+P+AFLERLKEAYR YTPYDPEDPGQ +V + Sbjct 336 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 395 Query 181 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNK 218 SFI+QS+PDI KL+RLE L+ TL DL++EAEKI+NK Sbjct 396 SFIWQSAPDIGRKLERLEDLKNKTLGDLVREAEKIFNK 433 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Baboon endogenous virus strain M7] Sequence ID: P10272.2 Length: 1727 Range 1: 227 to 454 Score:336 bits(862), Expect:4e-105, Method:Compositional matrix adjust., Identities:163/229(71%), Positives:190/229(82%), Gaps:1/229(0%) Query 1 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 60 PLR N QYWPFSASDLYNWK+HNP FSQDP ALT+LIESIL+THQPTWDDCQQLLQ Sbjct 227 PLRT-VNRTIQYWPFSASDLYNWKTHNPSFSQDPQALTSLIESILLTHQPTWDDCQQLLQ 285 Query 61 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 120 LLT EERQRVLLEARK VPG G PTQLPN IDE FPLTRP+WD+ T GRE LR+YRQ Sbjct 286 VLLTTEERQRVLLEARKNVPGPGGLPTQLPNEIDEGFPLTRPDWDYETAPGRESLRIYRQ 345 Query 121 LLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVIL 180 LLAGL+GA +RPTNLA+V+ + QGK+E+PAAF+ERL E +RMYTP+DPE P A+V + Sbjct 346 ALLAGLKGAGKRPTNLAKVRTITQGKDESPAAFMERLLEGFRMYTPFDPEAPEHKATVAM 405 Query 181 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNKRETPEEREERL 229 SFI Q++ DI+ KLQRL+G+Q L +L++EAEK+YNKRETPEERE RL Sbjct 406 SFIDQAALDIKGKLQRLDGIQTHGLQELVREAEKVYNKRETPEEREARL 454 >RecName: Full=Gag polyprotein; Short=Pr65gag; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-gag; Short=NC-gag [Xenotropic MuLV-related virus VP35] Sequence ID: Q2F7J2.1 Length: 536 Range 1: 214 to 431 Score:315 bits(807), Expect:2e-104, Method:Compositional matrix adjust., Identities:151/218(69%), Positives:178/218(81%), Gaps:0/218(0%) Query 1 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 60 PLR G + + QYWPFS+SDLYNWK++NP FS+DP LT LIES+L+THQPTWDDCQQLL Sbjct 214 PLRMGGDGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLITHQPTWDDCQQLLG 273 Query 61 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 120 LLTGEE+QRVLLEA K V G DGRPTQLPN ++ FPL RP+WD+ T GR HL LYRQ Sbjct 274 TLLTGEEKQRVLLEAGKAVRGNDGRPTQLPNEVNAAFPLERPDWDYTTTEGRNHLVLYRQ 333 Query 121 LLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVIL 180 LLLAGL+ A R PTNLA+VK + QG E+P+AFLERLKEAYR YTPYDPEDPGQ +V + Sbjct 334 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 393 Query 181 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNK 218 SFI+QS+PDI KL+RLE L+ TL DL++EAEKI+NK Sbjct 394 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNK 431 >RecName: Full=Gag polyprotein; Short=Pr65gag; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-gag; Short=NC-gag [Xenotropic MuLV-related virus VP42] Sequence ID: Q2F7I9.1 Length: 536 Range 1: 214 to 431 Score:315 bits(807), Expect:2e-104, Method:Compositional matrix adjust., Identities:151/218(69%), Positives:178/218(81%), Gaps:0/218(0%) Query 1 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 60 PLR G + + QYWPFS+SDLYNWK++NP FS+DP LT LIES+L+THQPTWDDCQQLL Sbjct 214 PLRMGGDGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLITHQPTWDDCQQLLG 273 Query 61 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 120 LLTGEE+QRVLLEARK V G DGRPTQLPN ++ FPL RP+W + T GR HL LYRQ Sbjct 274 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNAAFPLERPDWGYTTTEGRNHLVLYRQ 333 Query 121 LLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVIL 180 LLLAGL+ A R PTNLA+VK + QG E+P+AFLERLKEAYR YTPYDPEDPGQ +V + Sbjct 334 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 393 Query 181 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNK 218 SFI+QS+PDI KL+RLE L+ TL DL++EAEKI+NK Sbjct 394 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNK 431 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [Friend murine leukemia virus (ISOLATE PVC-211)] Sequence ID: P0DOH6.1 Length: 626 Range 1: 304 to 521 Score:316 bits(810), Expect:8e-104, Method:Compositional matrix adjust., Identities:154/218(71%), Positives:180/218(82%), Gaps:0/218(0%) Query 1 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 60 PLR G N + QYWPFS+SDLYNWK++NP FS+DP LT LIES+L+THQPTWDDCQQLL Sbjct 304 PLRLGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLLTHQPTWDDCQQLLG 363 Query 61 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 120 LLTGEE+QRVLLEARK V GEDGRPTQLPN I++ FPL RP+WD+ T GR HL YRQ Sbjct 364 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 423 Query 121 LLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVIL 180 LLLAGL+ A R PTNLA+VK + QG E+P+AFLERLKEAYR YTPYDPEDPGQ +V + Sbjct 424 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 483 Query 181 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNK 218 SFI+QS+PDI KL+RLE L+ TL DL++EAEKI+NK Sbjct 484 SFIWQSAPDIGRKLERLEDLKNKTLGDLVREAEKIFNK 521 >RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Cas-Br-E murine leukemia virus] Sequence ID: P08361.2 Length: 1733 Range 1: 214 to 476 Score:332 bits(851), Expect:2e-103, Method:Compositional matrix adjust., Identities:168/263(64%), Positives:202/263(76%), Gaps:15/263(5%) Query 1 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 60 PLR G N + QYWPFS+SDLYNWK++NP FS+DP LT LIES+L+THQPTWDDCQQLL Sbjct 214 PLRSGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLLTHQPTWDDCQQLLG 273 Query 61 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 120 LLTGEE+QRVLLEARK V GEDGRPTQLPN I++ FPL RP+WD+ T GR HL LYRQ Sbjct 274 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNEINDAFPLERPDWDYNTQRGRNHLVLYRQ 333 Query 121 LLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVIL 180 LLLAGL+ A R PTNLA+VK + QG E+P+AFLERLKEAYR YTPYDPEDPGQ +V + Sbjct 334 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 393 Query 181 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNK---------------RETPEER 225 SFI+QS+PDI KL+RLE L+ TL DL++EAEKI+NK E E R Sbjct 394 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIKRETEEKEERR 453 Query 226 EERLWQRQEERDKKRHKEMTKVL 248 Q+++ERD++RH+EM+K+L Sbjct 454 RAEDEQKEKERDRRRHREMSKLL 476 >RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Short=PR; AltName: Full=p14; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=p80; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=p46 [Moloney murine leukemia virus isolate Shinnick] Sequence ID: P03355.5 Length: 1738 Range 1: 216 to 478 Score:332 bits(850), Expect:2e-103, Method:Compositional matrix adjust., Identities:167/263(63%), Positives:201/263(76%), Gaps:15/263(5%) Query 1 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 60 PLR G N + QYWPFS+SDLYNWK++NP FS+DP LT LIES+L+THQPTWDDCQQLL Sbjct 216 PLRAGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLITHQPTWDDCQQLLG 275 Query 61 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 120 LLTGEE+QRVLLEARK V G+DGRPTQLPN +D FPL RP+WD+ T AGR HL YRQ Sbjct 276 TLLTGEEKQRVLLEARKAVRGDDGRPTQLPNEVDAAFPLERPDWDYTTQAGRNHLVHYRQ 335 Query 121 LLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVIL 180 LLLAGL+ A R PTNLA+VK + QG E+P+AFLERLKEAYR YTPYDPEDPGQ +V + Sbjct 336 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 395 Query 181 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNK---------------RETPEER 225 SFI+QS+PDI KL+RLE L+ TL DL++EAEKI+NK E E R Sbjct 396 SFIWQSAPDIGRKLERLEDLKNKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 455 Query 226 EERLWQRQEERDKKRHKEMTKVL 248 Q+++ERD++RH+EM+K+L Sbjct 456 RTEDEQKEKERDRRRHREMSKLL 478 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Friend murine leukemia virus (ISOLATE FB29)] Sequence ID: P26809.2 Length: 1738 Range 1: 216 to 478 Score:330 bits(847), Expect:6e-103, Method:Compositional matrix adjust., Identities:175/263(67%), Positives:209/263(79%), Gaps:15/263(5%) Query 1 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 60 PLR G N + QYWPFS+SDLYNWK++NP FS+DP LT LIES+L+THQPTWDDCQQLL Sbjct 216 PLRLGGNGQYQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 275 Query 61 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 120 LLTGEE+QRVLLEARK V GEDGRPTQLPN I++ FPL RP+WD+ T GR HL YRQ Sbjct 276 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 335 Query 121 LLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVIL 180 LLLAGL+ A R PTNLA+VK + QG E+P+AFLERLKEAYR YTPYDPEDPGQ +V + Sbjct 336 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 395 Query 181 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNKRETPEEREERLW---------- 230 SFI+QS+PDI KL+RLE L+ TL DL++EAEKI+NKRETPEEREER+ Sbjct 396 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 455 Query 231 -----QRQEERDKKRHKEMTKVL 248 QR++ERD++RH+EM+K+L Sbjct 456 RAEDVQREKERDRRRHREMSKLL 478 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Friend murine leukemia virus (ISOLATE 57)] Sequence ID: P26810.2 Length: 1739 Range 1: 217 to 479 Score:327 bits(838), Expect:9e-102, Method:Compositional matrix adjust., Identities:168/263(64%), Positives:202/263(76%), Gaps:15/263(5%) Query 1 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 60 PLR+G N + QYWPFS+SDLYNWK++NP FS+DP LT LIES+L+THQPTWDDCQQLL Sbjct 217 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 276 Query 61 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 120 LLTGEE+QRVLLEARK V GEDGRPTQLPN I++ FPL RP+WD+ T GR HL YRQ Sbjct 277 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 336 Query 121 LLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVIL 180 LLLAGL+ A R PTNLA+VK + QG E+P+AFLERLKEAYR YTPYDPEDPGQ +V + Sbjct 337 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 396 Query 181 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNK---------------RETPEER 225 SFI+QS+PDI KL+RLE L+ TL DL++EAEKI+NK E E R Sbjct 397 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 456 Query 226 EERLWQRQEERDKKRHKEMTKVL 248 QR++ERD++RH+EM+K+L Sbjct 457 RAEDEQREKERDRRRHREMSKLL 479 >RecName: Full=Gag-pol polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Murine leukemia virus (strain BM5 ECO)] Sequence ID: Q7SVK7.2 Length: 1734 Range 1: 215 to 477 Score:325 bits(832), Expect:6e-101, Method:Compositional matrix adjust., Identities:173/263(66%), Positives:206/263(78%), Gaps:15/263(5%) Query 1 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 60 PLR G N + QYWPFS+SDLYNWK++NP FS+DP LT LIES+L THQPTWDDCQQLL Sbjct 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 274 Query 61 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 120 LLTGEE+QRVLLEARK V G DGRPTQLPN ++ FPL RP+WD+ TP GR HL LYRQ Sbjct 275 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 334 Query 121 LLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVIL 180 LLLAGL+ A R PTNLA+VK + QG E+P+AFLERLKEAYR YTPYDPEDPGQ +V + Sbjct 335 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 394 Query 181 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNKRETPEEREERLW---------- 230 SFI+QS+P I KL+RLE L+ TL DL++EAEKI+NKRETPEEREER+ Sbjct 395 SFIWQSAPAIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 454 Query 231 -----QRQEERDKKRHKEMTKVL 248 QR++ERD++R +EM+K+L Sbjct 455 RAGDEQREKERDRRRQREMSKLL 477 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [AKR (endogenous) murine leukemia virus] Sequence ID: P03356.3 Length: 1734 Range 1: 215 to 477 Score:324 bits(830), Expect:1e-100, Method:Compositional matrix adjust., Identities:166/263(63%), Positives:199/263(75%), Gaps:15/263(5%) Query 1 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 60 PLR G N + QYWPFS+SDLYNWK++NP FS+DP LT LIES+L THQPTWDDCQQLL Sbjct 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 274 Query 61 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 120 LLTGEE+QRVLLEARK V G DGRPTQLPN +D FPL RP+WD+ T GR HL LYRQ Sbjct 275 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTQRGRNHLVLYRQ 334 Query 121 LLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVIL 180 LLLAGL+ A R PTNLA+VK + QG E+P+AFLERLKEAYR YTPYDPEDPGQ +V + Sbjct 335 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 394 Query 181 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNK---------------RETPEER 225 SFI+QS+PDI KL+RLE L+ TL DL++EAE+I+NK E E R Sbjct 395 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAERIFNKRETPEEREERVRRETEEKEERR 454 Query 226 EERLWQRQEERDKKRHKEMTKVL 248 Q+++ERD++RH+EM+K+L Sbjct 455 RAEEEQKEKERDRRRHREMSKLL 477 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA [Feline sarcoma virus (STRAIN HARDY-ZUCKERMAN 4)] Sequence ID: P04322.2 Length: 340 Range 1: 198 to 340 Score:298 bits(762), Expect:4e-100, Method:Compositional matrix adjust., Identities:143/143(100%), Positives:143/143(100%), Gaps:0/143(0%) Query 1 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 60 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ Sbjct 198 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 257 Query 61 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 120 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ Sbjct 258 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 317 Query 121 LLLAGLRGAARRPTNLAQVKQVV 143 LLLAGLRGAARRPTNLAQVKQVV Sbjct 318 LLLAGLRGAARRPTNLAQVKQVV 340 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Radiation murine leukemia virus] Sequence ID: P11227.2 Length: 1734 Range 1: 215 to 477 Score:322 bits(824), Expect:6e-100, Method:Compositional matrix adjust., Identities:167/263(63%), Positives:198/263(75%), Gaps:15/263(5%) Query 1 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 60 PLR G N + QYWPFS+SDLYNWK++NP FS+DP LT LIES+L THQPTWDDCQQLL Sbjct 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 274 Query 61 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 120 LLTGEE+QRVLLEARK V G DGRPTQLPN ++ FPL RP+WD+ TP GR HL LYRQ Sbjct 275 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 334 Query 121 LLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVIL 180 LLLAGL+ A R PTNLA+VK + QG E+P+AFLERLKEAYR YTPYDPED GQ SV + Sbjct 335 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSM 394 Query 181 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNK---------------RETPEER 225 SFI+QS+PDI KL+RLE L+ TL DL++EAEKI+NK E E R Sbjct 395 SFIWQSAPDIGRKLERLEDLKSKTLRDLVREAEKIFNKRETPEEREERFRRETEENEERR 454 Query 226 EERLWQRQEERDKKRHKEMTKVL 248 QR++ERD++R +EM+K+L Sbjct 455 RAEDEQREKERDRRRQREMSKLL 477 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [Feline sarcoma virus (STRAIN HARDY-ZUCKERMAN 4)] Sequence ID: P0DP83.1 Length: 414 Range 1: 272 to 414 Score:299 bits(765), Expect:1e-99, Method:Compositional matrix adjust., Identities:143/143(100%), Positives:143/143(100%), Gaps:0/143(0%) Query 1 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 60 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ Sbjct 272 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 331 Query 61 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 120 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ Sbjct 332 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 391 Query 121 LLLAGLRGAARRPTNLAQVKQVV 143 LLLAGLRGAARRPTNLAQVKQVV Sbjct 392 LLLAGLRGAARRPTNLAQVKQVV 414 >RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10; Short=NC-pol; Contains: RecName: Full=Protease p14; Short=PR; Contains: RecName: Full=Reverse transcriptase/ribonuclease H p80; Short=RT; Contains: RecName: Full=Integrase p46; Short=IN [Xenotropic MuLV-related virus VP62] Sequence ID: A1Z651.1 Length: 1733 Range 1: 214 to 431 Score:318 bits(815), Expect:9e-99, Method:Compositional matrix adjust., Identities:152/218(70%), Positives:179/218(82%), Gaps:0/218(0%) Query 1 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 60 PLR G + + QYWPFS+SDLYNWK++NP FS+DP LT LIES+L+THQPTWDDCQQLL Sbjct 214 PLRMGGDGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLITHQPTWDDCQQLLG 273 Query 61 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 120 LLTGEE+QRVLLEARK V G DGRPTQLPN ++ FPL RP+WD+ T GR HL LYRQ Sbjct 274 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNAAFPLERPDWDYTTTEGRNHLVLYRQ 333 Query 121 LLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVIL 180 LLLAGL+ A R PTNLA+VK + QG E+P+AFLERLKEAYR YTPYDPEDPGQ +V + Sbjct 334 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 393 Query 181 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNK 218 SFI+QS+PDI KL+RLE L+ TL DL++EAEKI+NK Sbjct 394 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNK 431 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Friend murine leukemia virus (ISOLATE PVC-211)] Sequence ID: P26808.2 Length: 1738 Range 1: 216 to 433 Score:318 bits(814), Expect:1e-98, Method:Compositional matrix adjust., Identities:154/218(71%), Positives:180/218(82%), Gaps:0/218(0%) Query 1 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 60 PLR G N + QYWPFS+SDLYNWK++NP FS+DP LT LIES+L+THQPTWDDCQQLL Sbjct 216 PLRLGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLLTHQPTWDDCQQLLG 275 Query 61 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 120 LLTGEE+QRVLLEARK V GEDGRPTQLPN I++ FPL RP+WD+ T GR HL YRQ Sbjct 276 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 335 Query 121 LLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVIL 180 LLLAGL+ A R PTNLA+VK + QG E+P+AFLERLKEAYR YTPYDPEDPGQ +V + Sbjct 336 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 395 Query 181 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNK 218 SFI+QS+PDI KL+RLE L+ TL DL++EAEKI+NK Sbjct 396 SFIWQSAPDIGRKLERLEDLKNKTLGDLVREAEKIFNK 433 >RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10; Short=NC-pol; Contains: RecName: Full=Protease p14; Short=PR; Contains: RecName: Full=Reverse transcriptase/ribonuclease H p80; Short=RT; Contains: RecName: Full=Integrase p46; Short=IN [Xenotropic MuLV-related virus VP42] Sequence ID: Q2F7J0.1 Length: 1733 Range 1: 214 to 431 Score:316 bits(809), Expect:7e-98, Method:Compositional matrix adjust., Identities:151/218(69%), Positives:178/218(81%), Gaps:0/218(0%) Query 1 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 60 PLR G + + QYWPFS+SDLYNWK++NP FS+DP LT LIES+L+THQPTWDDCQQLL Sbjct 214 PLRMGGDGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLITHQPTWDDCQQLLG 273 Query 61 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 120 LLTGEE+QRVLLEARK V G DGRPTQLPN ++ FPL RP+W + T GR HL LYRQ Sbjct 274 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNAAFPLERPDWGYTTTEGRNHLVLYRQ 333 Query 121 LLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVIL 180 LLLAGL+ A R PTNLA+VK + QG E+P+AFLERLKEAYR YTPYDPEDPGQ +V + Sbjct 334 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 393 Query 181 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNK 218 SFI+QS+PDI KL+RLE L+ TL DL++EAEKI+NK Sbjct 394 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNK 431 >RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10; Short=NC-pol; Contains: RecName: Full=Protease p14; Short=PR; Contains: RecName: Full=Reverse transcriptase/ribonuclease H p80; Short=RT; Contains: RecName: Full=Integrase p46; Short=IN [Xenotropic MuLV-related virus VP35] Sequence ID: Q2F7J3.1 Length: 1733 Range 1: 214 to 431 Score:316 bits(809), Expect:8e-98, Method:Compositional matrix adjust., Identities:151/218(69%), Positives:178/218(81%), Gaps:0/218(0%) Query 1 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 60 PLR G + + QYWPFS+SDLYNWK++NP FS+DP LT LIES+L+THQPTWDDCQQLL Sbjct 214 PLRMGGDGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLITHQPTWDDCQQLLG 273 Query 61 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 120 LLTGEE+QRVLLEA K V G DGRPTQLPN ++ FPL RP+WD+ T GR HL LYRQ Sbjct 274 TLLTGEEKQRVLLEAGKAVRGNDGRPTQLPNEVNAAFPLERPDWDYTTTEGRNHLVLYRQ 333 Query 121 LLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVIL 180 LLLAGL+ A R PTNLA+VK + QG E+P+AFLERLKEAYR YTPYDPEDPGQ +V + Sbjct 334 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 393 Query 181 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNK 218 SFI+QS+PDI KL+RLE L+ TL DL++EAEKI+NK Sbjct 394 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNK 431 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Gibbon ape leukemia virus] Sequence ID: P21416.3 Length: 520 Range 1: 213 to 419 Score:295 bits(754), Expect:1e-96, Method:Compositional matrix adjust., Identities:135/207(65%), Positives:173/207(83%), Gaps:0/207(0%) Query 11 QYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQALLTGEERQR 70 QYWPFS++DLYNWKS++P FS++P LT L+ES++ +HQPTWDDCQQLLQ L T EER+R Sbjct 213 QYWPFSSADLYNWKSNHPSFSENPAGLTGLLESLMFSHQPTWDDCQQLLQILFTTEERER 272 Query 71 VLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQLLLAGLRGAA 130 +LLEARK V G++G PTQL N+I+E FPL RP+WD+ T AGRE L +YR+ L+AGL+GAA Sbjct 273 ILLEARKNVLGDNGAPTQLENLINEAFPLNRPHWDYNTAAGRERLLVYRRTLVAGLKGAA 332 Query 131 RRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVILSFIYQSSPDI 190 RRPTNLA+V++V+QG E P+ FLERL EAYR YTP+DP GQ A+V ++FI QS+PDI Sbjct 333 RRPTNLAKVREVLQGPAEPPSVFLERLMEAYRRYTPFDPSSEGQQAAVAMAFIGQSAPDI 392 Query 191 RNKLQRLEGLQGFTLSDLLKEAEKIYN 217 + KLQRLEGLQ ++L DL+KEAEK+Y+ Sbjct 393 KKKLQRLEGLQDYSLQDLVKEAEKVYH 419 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Woolly monkey sarcoma virus] Sequence ID: P03330.4 Length: 521 Range 1: 214 to 420 Score:293 bits(749), Expect:7e-96, Method:Compositional matrix adjust., Identities:134/207(65%), Positives:173/207(83%), Gaps:0/207(0%) Query 11 QYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQALLTGEERQR 70 QYWPFS++DLYNWKS++P FS++P LT L+ES++ +HQPTWDDCQQLLQ L T EER+R Sbjct 214 QYWPFSSADLYNWKSNHPSFSENPAGLTGLLESLMFSHQPTWDDCQQLLQILFTTEERER 273 Query 71 VLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQLLLAGLRGAA 130 +LLEARK V G++G PTQL N+I+E FPL RP WD+ T AGRE L +YR+ L+AGL+GAA Sbjct 274 ILLEARKNVLGDNGAPTQLENLINEAFPLNRPQWDYNTAAGRERLLVYRRTLVAGLKGAA 333 Query 131 RRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVILSFIYQSSPDI 190 RRPTNLA+V++V+QG E P+ FLERL EAYR YTP+DP + GQ A+V ++FI QS+PDI Sbjct 334 RRPTNLAKVREVLQGPAEPPSVFLERLMEAYRRYTPFDPSEEGQQAAVAMAFIGQSAPDI 393 Query 191 RNKLQRLEGLQGFTLSDLLKEAEKIYN 217 + KLQRLEGLQ ++L DL++EAEK+Y+ Sbjct 394 KKKLQRLEGLQDYSLQDLVREAEKVYH 420 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Koala retrovirus] Sequence ID: Q9TTC2.3 Length: 521 Range 1: 214 to 420 Score:290 bits(741), Expect:1e-94, Method:Compositional matrix adjust., Identities:135/207(65%), Positives:168/207(81%), Gaps:0/207(0%) Query 11 QYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQALLTGEERQR 70 QYWPFS++DLYNWKS++P FS++P LT L+ES++ +HQPTWDDCQQLLQ L T EER+R Sbjct 214 QYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTWDDCQQLLQVLFTTEERER 273 Query 71 VLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQLLLAGLRGAA 130 +LLEARK V G +G PTQL N+I+E FPL RP WD T GRE L +YR+ L+AGL+GAA Sbjct 274 ILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGRERLLVYRRTLVAGLKGAA 333 Query 131 RRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVILSFIYQSSPDI 190 RRPTNLA+V++V+QG E P+ FLERL EAYR YTP+DP GQ A+V +SFI QS+PDI Sbjct 334 RRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSEGQKAAVAMSFIGQSAPDI 393 Query 191 RNKLQRLEGLQGFTLSDLLKEAEKIYN 217 + KLQRLEGLQ +L DL+KEAEK+Y+ Sbjct 394 KKKLQRLEGLQDHSLQDLIKEAEKVYH 420 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Gibbon ape leukemia virus] Sequence ID: P21414.2 Length: 1686 Range 1: 196 to 419 Score:295 bits(754), Expect:2e-90, Method:Compositional matrix adjust., Identities:141/224(63%), Positives:179/224(79%), Gaps:7/224(3%) Query 1 PLRE-GPNNRP------QYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWD 53 PLR GP P QYWPFS++DLYNWKS++P FS++P LT L+ES++ +HQPTWD Sbjct 196 PLRAIGPPAEPNGLVPLQYWPFSSADLYNWKSNHPSFSENPAGLTGLLESLMFSHQPTWD 255 Query 54 DCQQLLQALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGRE 113 DCQQLLQ L T EER+R+LLEARK V G++G PTQL N+I+E FPL RP+WD+ T AGRE Sbjct 256 DCQQLLQILFTTEERERILLEARKNVLGDNGAPTQLENLINEAFPLNRPHWDYNTAAGRE 315 Query 114 HLRLYRQLLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPG 173 L +YR+ L+AGL+GAARRPTNLA+V++V+QG E P+ FLERL EAYR YTP+DP G Sbjct 316 RLLVYRRTLVAGLKGAARRPTNLAKVREVLQGPAEPPSVFLERLMEAYRRYTPFDPSSEG 375 Query 174 QAASVILSFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYN 217 Q A+V ++FI QS+PDI+ KLQRLEGLQ ++L DL+KEAEK+Y+ Sbjct 376 QQAAVAMAFIGQSAPDIKKKLQRLEGLQDYSLQDLVKEAEKVYH 419 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Short=PR; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=p80; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=p46 [Woolly monkey sarcoma virus] Sequence ID: P03359.2 Length: 1687 Range 1: 197 to 420 Score:293 bits(751), Expect:4e-90, Method:Compositional matrix adjust., Identities:140/224(63%), Positives:179/224(79%), Gaps:7/224(3%) Query 1 PLRE-GPNNRP------QYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWD 53 PLR GP P QYWPFS++DLYNWKS++P FS++P LT L+ES++ +HQPTWD Sbjct 197 PLRAIGPPAEPNGLVPLQYWPFSSADLYNWKSNHPSFSENPAGLTGLLESLMFSHQPTWD 256 Query 54 DCQQLLQALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGRE 113 DCQQLLQ L T EER+R+LLEARK V G++G PTQL N+I+E FPL RP WD+ T AGRE Sbjct 257 DCQQLLQILFTTEERERILLEARKNVLGDNGAPTQLENLINEAFPLNRPQWDYNTAAGRE 316 Query 114 HLRLYRQLLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPG 173 L +YR+ L+AGL+GAARRPTNLA+V++V+QG E P+ FLERL EAYR YTP+DP + G Sbjct 317 RLLVYRRTLVAGLKGAARRPTNLAKVREVLQGPAEPPSVFLERLMEAYRRYTPFDPSEEG 376 Query 174 QAASVILSFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYN 217 Q A+V ++FI QS+PDI+ KLQRLEGLQ ++L DL++EAEK+Y+ Sbjct 377 QQAAVAMAFIGQSAPDIKKKLQRLEGLQDYSLQDLVREAEKVYH 420 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr125Pol; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease/Reverse transcriptase/ribonuclease H; AltName: Full=p87; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=p42 [Koala retrovirus] Sequence ID: Q9TTC1.2 Length: 1687 Range 1: 197 to 420 Score:289 bits(740), Expect:1e-88, Method:Compositional matrix adjust., Identities:141/224(63%), Positives:174/224(77%), Gaps:7/224(3%) Query 1 PLRE-GPNNRP------QYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWD 53 PLR GP P QYWPFS++DLYNWKS++P FS++P LT L+ES++ +HQPTWD Sbjct 197 PLRAVGPPAEPNGLVPLQYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTWD 256 Query 54 DCQQLLQALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGRE 113 DCQQLLQ L T EER+R+LLEARK V G +G PTQL N+I+E FPL RP WD T GRE Sbjct 257 DCQQLLQVLFTTEERERILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGRE 316 Query 114 HLRLYRQLLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPG 173 L +YR+ L+AGL+GAARRPTNLA+V++V+QG E P+ FLERL EAYR YTP+DP G Sbjct 317 RLLVYRRTLVAGLKGAARRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSEG 376 Query 174 QAASVILSFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYN 217 Q A+V +SFI QS+PDI+ KLQRLEGLQ +L DL+KEAEK+Y+ Sbjct 377 QKAAVAMSFIGQSAPDIKKKLQRLEGLQDHSLQDLIKEAEKVYH 420 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA [Snyder-Theilen feline sarcoma virus] Sequence ID: P03338.2 Length: 297 Range 1: 198 to 297 Score:211 bits(538), Expect:9e-67, Method:Compositional matrix adjust., Identities:100/100(100%), Positives:100/100(100%), Gaps:0/100(0%) Query 1 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 60 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ Sbjct 198 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 257 Query 61 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLT 100 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLT Sbjct 258 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLT 297 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [Snyder-Theilen feline sarcoma virus] Sequence ID: P0DOG9.1 Length: 371 Range 1: 272 to 371 Score:212 bits(540), Expect:3e-66, Method:Compositional matrix adjust., Identities:100/100(100%), Positives:100/100(100%), Gaps:0/100(0%) Query 1 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 60 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ Sbjct 272 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 331 Query 61 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLT 100 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLT Sbjct 332 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLT 371 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA [Finkel-Biskis-Jinkins murine sarcoma virus] Sequence ID: P29175.3 Length: 310 Range 1: 224 to 309 Score:132 bits(331), Expect:7e-36, Method:Compositional matrix adjust., Identities:61/86(71%), Positives:71/86(82%), Gaps:0/86(0%) Query 24 KSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQALLTGEERQRVLLEARKQVPGED 83 K++NP FS+DP LT LIES+L THQPTWDDCQQLL LLTGEE+QRVLLEARK V G D Sbjct 224 KNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGND 283 Query 84 GRPTQLPNVIDETFPLTRPNWDFATP 109 GRPTQ+PN ++ FPL RP+WD+ TP Sbjct 284 GRPTQMPNEVNAAFPLERPDWDYTTP 309 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA [Avian spleen necrosis virus] Sequence ID: P03342.1 Length: 313 Range 1: 217 to 310 Score:103 bits(258), Expect:4e-25, Method:Compositional matrix adjust., Identities:50/94(53%), Positives:64/94(68%), Gaps:1/94(1%) Query 12 YWPFSASDLYNWKSHNPP-FSQDPVALTNLIESILVTHQPTWDDCQQLLQALLTGEERQR 70 Y PF+ SDLYNWK+ NP FSQ P + +L+ES+ THQPTWDDCQQLL+ L T EER+R Sbjct 217 YVPFTTSDLYNWKNQNPSSFSQAPDQVISLLESVFYTHQPTWDDCQQLLRTLFTTEERER 276 Query 71 VLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNW 104 V E+R++V + G I+ FP TRP+W Sbjct 277 VRTESRREVRNDQGVQVTDEREIEAQFPATRPDW 310