Phylogenetic tree
Last updated: 10-02-2018.
Task 1. Selected bacteria
| Name | Mnemonics | NCBI taxonomy |
|---|---|---|
| Bradyrhizobium diazoefficiens | BRADU | cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium |
| Burkholderia cenocepacia | BURCA | cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex |
| Ralstonia solanacearum | RALSO | cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia |
| Neisseria meningitidis | NEIMA | cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria |
| Salmonella typhimurium | SALTY | cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella; Salmonella enterica; Salmonella enterica subsp. enterica |
| Pasteurella multocida | PASMU | cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Pasteurella |
| Proteus mirabilis | PROMH | cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Morganellaceae; Proteus |
| Escherichia coli | ECOLI | cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia |
Task 2. Newick tree format
(BRADU, ((NEIMA, (RALSO, BURCA)), (PASMU, (PROMH, (SALTY, ECOLI)))));
Task 3. Tree image
Task 4. Tree non-trivial branches
1) {RALSO, BURCA, NEIMA} VS {PASMU, SALTY, ECOLI, PROMH, BRADU}
2) {RALSO, BURCA} VS {NEIMA, PASMU, SALTY, ECOLI, PROMH, BRADU}
3) {PASMU, SALTY, ECOLI, PROMH} VS {RALSO, BURCA, NEIMA, BRADU}
4) {SALTY, ECOLI, PROMH} VS {RALSO, BURCA, NEIMA, BRADU, PASMU}
5) {SALTY, ECOLI} VS {RALSO, BURCA, NEIMA, BRADU, PASMU, PROMH}
Task 5. Non-trivial branches and taxonomy
Red (1) branch divides Betaproteobacteria from the others and blue one (3) divides Gammaproteobacteria. Second branch (green) isolates Burkholderiales order. Forth (purple) branch isolates Enterobacterales order.
