RID: 2UXA8HWR013 Job Title:sp|P03353|137-350 Program: BLASTP Query: sp|P03353|137-350 ID: lcl|Query_2132999(amino acid) Length: 214 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Gag polyprotein; AltName: Full=Pr53Gag; Contains... Human T-lymp... NA 11909 440 440 100% 2e-155 100.00 433 P03346.3 RecName: Full=Gag-Pro polyprotein; AltName: Full=Pr76Gag-Pro;... Human T-lymp... NA 11909 440 440 100% 3e-153 100.00 602 P03353.3 RecName: Full=Gag-Pro-Pol polyprotein; AltName:... Human T-lymp... NA 11909 440 440 100% 2e-144 100.00 1461 P03363.4 RecName: Full=Gag polyprotein; AltName: Full=Pr53Gag; Contains... Human T-cell... NA 11927 389 389 100% 2e-135 85.98 429 P14076.3 RecName: Full=Gag polyprotein; AltName: Full=Pr53Gag; Contains... Human T-cell... NA 406769 389 389 100% 2e-135 85.51 422 Q09T00.3 RecName: Full=Gag polyprotein; AltName: Full=Pr53Gag; Contains... Human T-cell... NA 11926 388 388 100% 4e-135 85.51 429 P03345.3 RecName: Full=Gag polyprotein; AltName: Full=Pr53Gag; Contains... HTLV-3 strai... NA 402036 385 385 100% 4e-134 85.51 422 Q0R5R4.3 RecName: Full=Gag polyprotein; AltName: Full=Pr53Gag; Contains... Human T-cell... NA 11928 385 385 100% 6e-134 85.05 429 P14077.3 RecName: Full=Gag polyprotein; AltName: Full=Pr53Gag; Contains... HTLV-1 isola... NA 402046 384 384 100% 1e-133 84.58 429 P0C209.2 RecName: Full=Gag-Pro polyprotein; AltName: Full=Pr76Gag-Pro;... Human T-cell... NA 406769 389 389 100% 2e-133 85.51 584 Q09SZ9.3 RecName: Full=Gag-Pro polyprotein; AltName: Full=Pr76Gag-Pro;... Human T-cell... NA 11927 390 390 100% 9e-133 85.98 651 P14074.3 RecName: Full=Gag-Pro polyprotein; AltName: Full=Pr76Gag-Pro;... Human T-cell... NA 11926 389 389 100% 3e-132 85.51 651 P10274.3 RecName: Full=Gag-Pro polyprotein; AltName: Full=Pr76Gag-Pro;... HTLV-3 strai... NA 402036 386 386 100% 3e-132 85.51 584 Q0R5R3.3 RecName: Full=Gag-Pro polyprotein; AltName: Full=Pr76Gag-Pro;... HTLV-1 isola... NA 402046 385 385 100% 5e-131 84.58 651 P0C210.2 RecName: Full=Gag-Pro-Pol polyprotein; AltName:... Human T-cell... NA 11927 391 391 100% 3e-126 85.98 1462 P14078.3 RecName: Full=Gag-Pro-Pol polyprotein; AltName:... Human T-cell... NA 406769 389 389 100% 9e-126 85.51 1440 Q4U0X6.4 RecName: Full=Gag-Pro-Pol polyprotein; AltName:... Human T-cell... NA 11926 389 389 100% 1e-125 85.51 1462 P03362.3 RecName: Full=Gag-Pro-Pol polyprotein; AltName:... HTLV-3 strai... NA 402036 386 386 100% 1e-124 85.51 1440 Q0R5R2.3 RecName: Full=Gag-Pro-Pol polyprotein; AltName:... HTLV-1 isola... NA 402046 386 386 100% 2e-124 84.58 1462 P0C211.2 RecName: Full=Gag polyprotein; Contains: RecName: Full=Matrix... Bovine leuke... NA 11903 180 180 94% 6e-54 44.33 392 P25058.4 RecName: Full=Gag-Pro polyprotein; Contains: RecName:... Bovine leuke... NA 11903 180 180 92% 1e-52 45.23 571 P0DOI1.1 RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName:... Bovine leuke... NA 11903 179 179 92% 7e-51 45.23 1416 P25059.2 RecName: Full=Gag-Pro polyprotein; Contains: RecName:... Bovine leuke... NA 11907 165 165 94% 6e-47 44.61 571 P0DOI0.1 RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName:... Bovine leuke... NA 11907 164 164 94% 1e-45 44.61 1416 P03361.2 RecName: Full=Gag polyprotein; Contains: RecName: Full=Matrix... Bovine leuke... NA 11907 100 100 83% 1e-23 36.56 392 P03344.3 RecName: Full=Endogenous retrovirus group K member 5 Gag... Homo sapiens human 9606 44.3 44.3 28% 4e-04 36.92 667 Q9HDB9.3 RecName: Full=Endogenous retrovirus group K member 113 Gag... Homo sapiens human 9606 43.5 43.5 28% 6e-04 37.10 666 P62684.2 RecName: Full=Endogenous retrovirus group K member 7 Gag... Homo sapiens human 9606 43.5 43.5 28% 7e-04 37.10 666 P63130.2 RecName: Full=Endogenous retrovirus group K member 6 Gag... Homo sapiens human 9606 43.5 43.5 28% 7e-04 37.10 666 Q7LDI9.3 RecName: Full=Endogenous retrovirus group K member 9 Gag... Homo sapiens human 9606 43.5 43.5 28% 7e-04 37.10 666 P63126.2 RecName: Full=Endogenous retrovirus group K member 8 Gag... Homo sapiens human 9606 43.5 43.5 28% 7e-04 37.10 647 P62685.2 RecName: Full=Endogenous retrovirus group K member 9 Pol... Homo sapiens human 9606 43.1 43.1 28% 0.001 37.10 1117 P63128.3 RecName: Full=Endogenous retrovirus group K member 24 Gag... Homo sapiens human 9606 42.7 42.7 26% 0.001 35.71 666 P63145.2 RecName: Full=Gag polyprotein; Contains: RecName: Full=Matrix... Feline immun... NA 11675 42.4 42.4 43% 0.002 30.53 450 P19027.1 RecName: Full=Endogenous retrovirus group K member 10 Gag... Homo sapiens human 9606 42.4 42.4 28% 0.002 37.10 666 P87889.4 RecName: Full=Gag polyprotein; Contains: RecName: Full=Matrix... Feline immun... NA 11674 41.2 41.2 43% 0.004 29.47 450 P16087.1 RecName: Full=Gag polyprotein; Contains: RecName: Full=Matrix... Feline immun... NA 45409 40.8 40.8 43% 0.004 29.47 450 Q05313.1 RecName: Full=Endogenous retrovirus group K member 21 Gag... Homo sapiens human 9606 40.8 40.8 28% 0.005 35.48 666 P62683.2 RecName: Full=Endogenous retrovirus group K member 19 Gag... Homo sapiens human 9606 39.7 39.7 28% 0.013 35.48 666 Q9YNA8.3 RecName: Full=Gag polyprotein; Contains: RecName: Full=Matrix... Feline immun... NA 31676 39.3 39.3 43% 0.014 28.42 449 P31821.1 Alignments: >RecName: Full=Gag polyprotein; AltName: Full=Pr53Gag; Contains: RecName: Full=Matrix protein p19; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p15-gag; Short=NC-gag [Human T-lymphotropic virus 2] Sequence ID: P03346.3 Length: 433 Range 1: 137 to 350 Score:440 bits(1131), Expect:2e-155, Method:Compositional matrix adjust., Identities:214/214(100%), Positives:214/214(100%), Gaps:0/214(0%) Query 1 PILHPPGAPSAHRPWQMKDLQAIKQEVSSSALGSPQFMQTLRLAVQQFDPTAKDLQDLLQ 60 PILHPPGAPSAHRPWQMKDLQAIKQEVSSSALGSPQFMQTLRLAVQQFDPTAKDLQDLLQ Sbjct 137 PILHPPGAPSAHRPWQMKDLQAIKQEVSSSALGSPQFMQTLRLAVQQFDPTAKDLQDLLQ 196 Query 61 YLCSSLVVSLHHQQLNTLITEAETRGMTGYNPMAGPLRMQANNPAQQGLRREYQNLWLAA 120 YLCSSLVVSLHHQQLNTLITEAETRGMTGYNPMAGPLRMQANNPAQQGLRREYQNLWLAA Sbjct 197 YLCSSLVVSLHHQQLNTLITEAETRGMTGYNPMAGPLRMQANNPAQQGLRREYQNLWLAA 256 Query 121 FSTLPGNTRDPSWAAILQGLEEPYCAFVERLNVALDNGLPEGTPKEPILRSLAYSNANKE 180 FSTLPGNTRDPSWAAILQGLEEPYCAFVERLNVALDNGLPEGTPKEPILRSLAYSNANKE Sbjct 257 FSTLPGNTRDPSWAAILQGLEEPYCAFVERLNVALDNGLPEGTPKEPILRSLAYSNANKE 316 Query 181 CQKILQARGHTNSPLGEMLRTCQAWTPKDKTKVL 214 CQKILQARGHTNSPLGEMLRTCQAWTPKDKTKVL Sbjct 317 CQKILQARGHTNSPLGEMLRTCQAWTPKDKTKVL 350 >RecName: Full=Gag-Pro polyprotein; AltName: Full=Pr76Gag-Pro; Contains: RecName: Full=Matrix protein p19; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p15-pro; Short=NC'; Short=NC-pro; Contains: RecName: Full=Protease; Short=PR; Contains: RecName: Full=p1; Contains: RecName: Full=Transframe peptide; Short=TFP; AltName: Full=p8 [Human T-lymphotropic virus 2] Sequence ID: P03353.3 Length: 602 Range 1: 137 to 350 Score:440 bits(1132), Expect:3e-153, Method:Compositional matrix adjust., Identities:214/214(100%), Positives:214/214(100%), Gaps:0/214(0%) Query 1 PILHPPGAPSAHRPWQMKDLQAIKQEVSSSALGSPQFMQTLRLAVQQFDPTAKDLQDLLQ 60 PILHPPGAPSAHRPWQMKDLQAIKQEVSSSALGSPQFMQTLRLAVQQFDPTAKDLQDLLQ Sbjct 137 PILHPPGAPSAHRPWQMKDLQAIKQEVSSSALGSPQFMQTLRLAVQQFDPTAKDLQDLLQ 196 Query 61 YLCSSLVVSLHHQQLNTLITEAETRGMTGYNPMAGPLRMQANNPAQQGLRREYQNLWLAA 120 YLCSSLVVSLHHQQLNTLITEAETRGMTGYNPMAGPLRMQANNPAQQGLRREYQNLWLAA Sbjct 197 YLCSSLVVSLHHQQLNTLITEAETRGMTGYNPMAGPLRMQANNPAQQGLRREYQNLWLAA 256 Query 121 FSTLPGNTRDPSWAAILQGLEEPYCAFVERLNVALDNGLPEGTPKEPILRSLAYSNANKE 180 FSTLPGNTRDPSWAAILQGLEEPYCAFVERLNVALDNGLPEGTPKEPILRSLAYSNANKE Sbjct 257 FSTLPGNTRDPSWAAILQGLEEPYCAFVERLNVALDNGLPEGTPKEPILRSLAYSNANKE 316 Query 181 CQKILQARGHTNSPLGEMLRTCQAWTPKDKTKVL 214 CQKILQARGHTNSPLGEMLRTCQAWTPKDKTKVL Sbjct 317 CQKILQARGHTNSPLGEMLRTCQAWTPKDKTKVL 350 >RecName: Full=Gag-Pro-Pol polyprotein; AltName: Full=Pr160Gag-Pro-Pol; Contains: RecName: Full=Matrix protein p19; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p15-pro; Short=NC'; Short=NC-pro; Contains: RecName: Full=Protease; Short=PR; Contains: RecName: Full=p1; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Human T-lymphotropic virus 2] Sequence ID: P03363.4 Length: 1461 Range 1: 137 to 350 Score:440 bits(1131), Expect:2e-144, Method:Compositional matrix adjust., Identities:214/214(100%), Positives:214/214(100%), Gaps:0/214(0%) Query 1 PILHPPGAPSAHRPWQMKDLQAIKQEVSSSALGSPQFMQTLRLAVQQFDPTAKDLQDLLQ 60 PILHPPGAPSAHRPWQMKDLQAIKQEVSSSALGSPQFMQTLRLAVQQFDPTAKDLQDLLQ Sbjct 137 PILHPPGAPSAHRPWQMKDLQAIKQEVSSSALGSPQFMQTLRLAVQQFDPTAKDLQDLLQ 196 Query 61 YLCSSLVVSLHHQQLNTLITEAETRGMTGYNPMAGPLRMQANNPAQQGLRREYQNLWLAA 120 YLCSSLVVSLHHQQLNTLITEAETRGMTGYNPMAGPLRMQANNPAQQGLRREYQNLWLAA Sbjct 197 YLCSSLVVSLHHQQLNTLITEAETRGMTGYNPMAGPLRMQANNPAQQGLRREYQNLWLAA 256 Query 121 FSTLPGNTRDPSWAAILQGLEEPYCAFVERLNVALDNGLPEGTPKEPILRSLAYSNANKE 180 FSTLPGNTRDPSWAAILQGLEEPYCAFVERLNVALDNGLPEGTPKEPILRSLAYSNANKE Sbjct 257 FSTLPGNTRDPSWAAILQGLEEPYCAFVERLNVALDNGLPEGTPKEPILRSLAYSNANKE 316 Query 181 CQKILQARGHTNSPLGEMLRTCQAWTPKDKTKVL 214 CQKILQARGHTNSPLGEMLRTCQAWTPKDKTKVL Sbjct 317 CQKILQARGHTNSPLGEMLRTCQAWTPKDKTKVL 350 >RecName: Full=Gag polyprotein; AltName: Full=Pr53Gag; Contains: RecName: Full=Matrix protein p19; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p15-gag; Short=NC-gag [Human T-cell lymphotrophic virus type 1 (Caribbean isolate)] Sequence ID: P14076.3 Length: 429 Range 1: 131 to 344 Score:389 bits(999), Expect:2e-135, Method:Compositional matrix adjust., Identities:184/214(86%), Positives:202/214(94%), Gaps:0/214(0%) Query 1 PILHPPGAPSAHRPWQMKDLQAIKQEVSSSALGSPQFMQTLRLAVQQFDPTAKDLQDLLQ 60 P++HP GAP HRPWQMKDLQAIKQEVS +A GSPQFMQT+RLAVQQFDPTAKDLQDLLQ Sbjct 131 PVMHPHGAPPNHRPWQMKDLQAIKQEVSQAAPGSPQFMQTIRLAVQQFDPTAKDLQDLLQ 190 Query 61 YLCSSLVVSLHHQQLNTLITEAETRGMTGYNPMAGPLRMQANNPAQQGLRREYQNLWLAA 120 YLCSSLV SLHHQQL++LI+EAETRG+TGYNP+AGPLR+QANNP QQGLRREYQ LWLAA Sbjct 191 YLCSSLVASLHHQQLDSLISEAETRGITGYNPLAGPLRVQANNPQQQGLRREYQQLWLAA 250 Query 121 FSTLPGNTRDPSWAAILQGLEEPYCAFVERLNVALDNGLPEGTPKEPILRSLAYSNANKE 180 F+ LPG+ +DPSWA+ILQGLEEPY AFVERLN+ALDNGLPEGTPK+PILRSLAYSNANKE Sbjct 251 FAALPGSAKDPSWASILQGLEEPYHAFVERLNIALDNGLPEGTPKDPILRSLAYSNANKE 310 Query 181 CQKILQARGHTNSPLGEMLRTCQAWTPKDKTKVL 214 CQK+LQARGHTNSPLG+MLR CQAWTPKDKTKVL Sbjct 311 CQKLLQARGHTNSPLGDMLRACQAWTPKDKTKVL 344 >RecName: Full=Gag polyprotein; AltName: Full=Pr53Gag; Contains: RecName: Full=Matrix protein p19; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p15-gag; Short=NC-gag [Human T-cell leukemia virus 3 (strain Pyl43)] Sequence ID: Q09T00.3 Length: 422 Range 1: 124 to 337 Score:389 bits(998), Expect:2e-135, Method:Compositional matrix adjust., Identities:183/214(86%), Positives:200/214(93%), Gaps:0/214(0%) Query 1 PILHPPGAPSAHRPWQMKDLQAIKQEVSSSALGSPQFMQTLRLAVQQFDPTAKDLQDLLQ 60 P+LHP GAP+ HRPWQMKDLQAIKQEVSSSA GSPQFMQT+RLAVQQFDPTAKDL DLLQ Sbjct 124 PVLHPHGAPATHRPWQMKDLQAIKQEVSSSAPGSPQFMQTVRLAVQQFDPTAKDLHDLLQ 183 Query 61 YLCSSLVVSLHHQQLNTLITEAETRGMTGYNPMAGPLRMQANNPAQQGLRREYQNLWLAA 120 YLCSSLV SLHHQQL TLI +AET+G+TGYNP+AGPLR+QANNP QQGLRREYQNLWL+A Sbjct 184 YLCSSLVASLHHQQLETLIAQAETQGITGYNPLAGPLRVQANNPNQQGLRREYQNLWLSA 243 Query 121 FSTLPGNTRDPSWAAILQGLEEPYCAFVERLNVALDNGLPEGTPKEPILRSLAYSNANKE 180 FS LPGNT+DP+WAAILQG EEP+C+FVERLNVALDNGLPEGTPK+PILRSLAYSNANKE Sbjct 244 FSALPGNTKDPTWAAILQGPEEPFCSFVERLNVALDNGLPEGTPKDPILRSLAYSNANKE 303 Query 181 CQKILQARGHTNSPLGEMLRTCQAWTPKDKTKVL 214 CQK+LQARG TNSPLGEMLR CQ WTP+DK K+L Sbjct 304 CQKLLQARGQTNSPLGEMLRACQTWTPRDKNKIL 337 >RecName: Full=Gag polyprotein; AltName: Full=Pr53Gag; Contains: RecName: Full=Matrix protein p19; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p15-gag; Short=NC-gag [Human T-cell lymphotrophic virus type 1 (strain ATK)] Sequence ID: P03345.3 Length: 429 Range 1: 131 to 344 Score:388 bits(997), Expect:4e-135, Method:Compositional matrix adjust., Identities:183/214(86%), Positives:201/214(93%), Gaps:0/214(0%) Query 1 PILHPPGAPSAHRPWQMKDLQAIKQEVSSSALGSPQFMQTLRLAVQQFDPTAKDLQDLLQ 60 P++HP GAP HRPWQMKDLQAIKQEVS +A GSPQFMQT+RLAVQQFDPTAKDLQDLLQ Sbjct 131 PVMHPHGAPPNHRPWQMKDLQAIKQEVSQAAPGSPQFMQTIRLAVQQFDPTAKDLQDLLQ 190 Query 61 YLCSSLVVSLHHQQLNTLITEAETRGMTGYNPMAGPLRMQANNPAQQGLRREYQNLWLAA 120 YLCSSLV SLHHQQL++LI+EAETRG+TGYNP+AGPLR+QANNP QQGLRREYQ LWLAA Sbjct 191 YLCSSLVASLHHQQLDSLISEAETRGITGYNPLAGPLRVQANNPQQQGLRREYQQLWLAA 250 Query 121 FSTLPGNTRDPSWAAILQGLEEPYCAFVERLNVALDNGLPEGTPKEPILRSLAYSNANKE 180 F+ LPG+ +DPSWA+ILQGLEEPY AFVERLN+ALDNGLPEGTPK+PILRSLAYSNANKE Sbjct 251 FAALPGSAKDPSWASILQGLEEPYHAFVERLNIALDNGLPEGTPKDPILRSLAYSNANKE 310 Query 181 CQKILQARGHTNSPLGEMLRTCQAWTPKDKTKVL 214 CQK+LQARGHTNSPLG+MLR CQ WTPKDKTKVL Sbjct 311 CQKLLQARGHTNSPLGDMLRACQTWTPKDKTKVL 344 >RecName: Full=Gag polyprotein; AltName: Full=Pr53Gag; Contains: RecName: Full=Matrix protein p19; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p15-gag; Short=NC-gag [HTLV-3 strain 2026ND] Sequence ID: Q0R5R4.3 Length: 422 Range 1: 124 to 337 Score:385 bits(990), Expect:4e-134, Method:Compositional matrix adjust., Identities:183/214(86%), Positives:200/214(93%), Gaps:0/214(0%) Query 1 PILHPPGAPSAHRPWQMKDLQAIKQEVSSSALGSPQFMQTLRLAVQQFDPTAKDLQDLLQ 60 PILHP GAP+AHRPWQMKDLQAIKQEVSSSA GSPQFMQT+RLAVQQFDPTAKDL DLLQ Sbjct 124 PILHPHGAPAAHRPWQMKDLQAIKQEVSSSAPGSPQFMQTIRLAVQQFDPTAKDLHDLLQ 183 Query 61 YLCSSLVVSLHHQQLNTLITEAETRGMTGYNPMAGPLRMQANNPAQQGLRREYQNLWLAA 120 YLCSSLV SLHHQQL TLI +AET+G+TGYNP+AGPLR+QANNP QQGLR+EYQNLWL+A Sbjct 184 YLCSSLVASLHHQQLETLIAQAETQGITGYNPLAGPLRIQANNPNQQGLRKEYQNLWLSA 243 Query 121 FSTLPGNTRDPSWAAILQGLEEPYCAFVERLNVALDNGLPEGTPKEPILRSLAYSNANKE 180 FS LPGNT+DP+WAAILQG EEP+ +FVERLNVALDNGLPEGTPK+PILRSLAYSNANKE Sbjct 244 FSALPGNTKDPTWAAILQGPEEPFGSFVERLNVALDNGLPEGTPKDPILRSLAYSNANKE 303 Query 181 CQKILQARGHTNSPLGEMLRTCQAWTPKDKTKVL 214 CQK+LQARG TNSPLGEMLR CQ WTP+DK K+L Sbjct 304 CQKLLQARGQTNSPLGEMLRACQTWTPRDKNKIL 337 >RecName: Full=Gag polyprotein; AltName: Full=Pr53Gag; Contains: RecName: Full=Matrix protein p19; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p15-gag; Short=NC-gag [Human T-cell lymphotrophic virus type 1 (isolate MT-2)] Sequence ID: P14077.3 Length: 429 Range 1: 131 to 344 Score:385 bits(989), Expect:6e-134, Method:Compositional matrix adjust., Identities:182/214(85%), Positives:200/214(93%), Gaps:0/214(0%) Query 1 PILHPPGAPSAHRPWQMKDLQAIKQEVSSSALGSPQFMQTLRLAVQQFDPTAKDLQDLLQ 60 P++HP GAP HRPWQMKDLQAIKQEVS +A GSPQFMQT+RLAVQQFDPTAKDLQDLLQ Sbjct 131 PVMHPHGAPPNHRPWQMKDLQAIKQEVSQAAPGSPQFMQTIRLAVQQFDPTAKDLQDLLQ 190 Query 61 YLCSSLVVSLHHQQLNTLITEAETRGMTGYNPMAGPLRMQANNPAQQGLRREYQNLWLAA 120 YLCSSLV SLHHQQL++LI+EAETRG+T YNP+AGPLR+QANNP QQGLRREYQ LWLAA Sbjct 191 YLCSSLVASLHHQQLDSLISEAETRGITSYNPLAGPLRVQANNPQQQGLRREYQQLWLAA 250 Query 121 FSTLPGNTRDPSWAAILQGLEEPYCAFVERLNVALDNGLPEGTPKEPILRSLAYSNANKE 180 F+ LPG+ +DPSWA+ILQGLEEPY AFVERLN+ALDNGLPEGTPK+PILRSLAYSNANKE Sbjct 251 FAALPGSAKDPSWASILQGLEEPYHAFVERLNIALDNGLPEGTPKDPILRSLAYSNANKE 310 Query 181 CQKILQARGHTNSPLGEMLRTCQAWTPKDKTKVL 214 CQK+LQARGHTNSPLG+MLR CQ WTPKDKTKVL Sbjct 311 CQKLLQARGHTNSPLGDMLRACQTWTPKDKTKVL 344 >RecName: Full=Gag polyprotein; AltName: Full=Pr53Gag; Contains: RecName: Full=Matrix protein p19; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p15-gag; Short=NC-gag [HTLV-1 isolate Mel 15] Sequence ID: P0C209.2 Length: 429 Range 1: 131 to 344 Score:384 bits(987), Expect:1e-133, Method:Compositional matrix adjust., Identities:181/214(85%), Positives:199/214(92%), Gaps:0/214(0%) Query 1 PILHPPGAPSAHRPWQMKDLQAIKQEVSSSALGSPQFMQTLRLAVQQFDPTAKDLQDLLQ 60 P++HP G P HRPWQMKDLQAIKQEVS +A GSPQFMQT+RLAVQQFDPTAKDLQDLLQ Sbjct 131 PVMHPHGVPPTHRPWQMKDLQAIKQEVSQAAPGSPQFMQTIRLAVQQFDPTAKDLQDLLQ 190 Query 61 YLCSSLVVSLHHQQLNTLITEAETRGMTGYNPMAGPLRMQANNPAQQGLRREYQNLWLAA 120 YLCSSLV SLHHQQL++LI+EAETRG+TGYNP+AGPLR+QANNP QQGLRREYQ LWL A Sbjct 191 YLCSSLVASLHHQQLDSLISEAETRGITGYNPLAGPLRVQANNPQQQGLRREYQQLWLTA 250 Query 121 FSTLPGNTRDPSWAAILQGLEEPYCAFVERLNVALDNGLPEGTPKEPILRSLAYSNANKE 180 F+ LPG+ +DPSWA+ILQGLEEPY FVERLNVALDNGLPEGTPK+PILRSLAYSNANKE Sbjct 251 FAALPGSAKDPSWASILQGLEEPYHTFVERLNVALDNGLPEGTPKDPILRSLAYSNANKE 310 Query 181 CQKILQARGHTNSPLGEMLRTCQAWTPKDKTKVL 214 CQK+LQARGHTNSPLG+MLR CQAWTP+DKTKVL Sbjct 311 CQKLLQARGHTNSPLGDMLRACQAWTPRDKTKVL 344 >RecName: Full=Gag-Pro polyprotein; AltName: Full=Pr76Gag-Pro; Contains: RecName: Full=Matrix protein p19; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p15-pro; Short=NC'; Short=NC-pro; Contains: RecName: Full=Protease; Short=PR; Contains: RecName: Full=p1; Contains: RecName: Full=Transframe peptide; Short=TFP; AltName: Full=p8; AltName: Full=pX [Human T-cell leukemia virus 3 (strain Pyl43)] Sequence ID: Q09SZ9.3 Length: 584 Range 1: 124 to 337 Score:389 bits(1000), Expect:2e-133, Method:Compositional matrix adjust., Identities:183/214(86%), Positives:200/214(93%), Gaps:0/214(0%) Query 1 PILHPPGAPSAHRPWQMKDLQAIKQEVSSSALGSPQFMQTLRLAVQQFDPTAKDLQDLLQ 60 P+LHP GAP+ HRPWQMKDLQAIKQEVSSSA GSPQFMQT+RLAVQQFDPTAKDL DLLQ Sbjct 124 PVLHPHGAPATHRPWQMKDLQAIKQEVSSSAPGSPQFMQTVRLAVQQFDPTAKDLHDLLQ 183 Query 61 YLCSSLVVSLHHQQLNTLITEAETRGMTGYNPMAGPLRMQANNPAQQGLRREYQNLWLAA 120 YLCSSLV SLHHQQL TLI +AET+G+TGYNP+AGPLR+QANNP QQGLRREYQNLWL+A Sbjct 184 YLCSSLVASLHHQQLETLIAQAETQGITGYNPLAGPLRVQANNPNQQGLRREYQNLWLSA 243 Query 121 FSTLPGNTRDPSWAAILQGLEEPYCAFVERLNVALDNGLPEGTPKEPILRSLAYSNANKE 180 FS LPGNT+DP+WAAILQG EEP+C+FVERLNVALDNGLPEGTPK+PILRSLAYSNANKE Sbjct 244 FSALPGNTKDPTWAAILQGPEEPFCSFVERLNVALDNGLPEGTPKDPILRSLAYSNANKE 303 Query 181 CQKILQARGHTNSPLGEMLRTCQAWTPKDKTKVL 214 CQK+LQARG TNSPLGEMLR CQ WTP+DK K+L Sbjct 304 CQKLLQARGQTNSPLGEMLRACQTWTPRDKNKIL 337 >RecName: Full=Gag-Pro polyprotein; AltName: Full=Pr76Gag-Pro; Contains: RecName: Full=Matrix protein p19; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p15-pro; Short=NC'; Short=NC-pro; Contains: RecName: Full=Protease; Short=PR; Contains: RecName: Full=p1; Contains: RecName: Full=Transframe peptide; Short=TFP; AltName: Full=p8 [Human T-cell lymphotrophic virus type 1 (Caribbean isolate)] Sequence ID: P14074.3 Length: 651 Range 1: 131 to 344 Score:390 bits(1001), Expect:9e-133, Method:Compositional matrix adjust., Identities:184/214(86%), Positives:202/214(94%), Gaps:0/214(0%) Query 1 PILHPPGAPSAHRPWQMKDLQAIKQEVSSSALGSPQFMQTLRLAVQQFDPTAKDLQDLLQ 60 P++HP GAP HRPWQMKDLQAIKQEVS +A GSPQFMQT+RLAVQQFDPTAKDLQDLLQ Sbjct 131 PVMHPHGAPPNHRPWQMKDLQAIKQEVSQAAPGSPQFMQTIRLAVQQFDPTAKDLQDLLQ 190 Query 61 YLCSSLVVSLHHQQLNTLITEAETRGMTGYNPMAGPLRMQANNPAQQGLRREYQNLWLAA 120 YLCSSLV SLHHQQL++LI+EAETRG+TGYNP+AGPLR+QANNP QQGLRREYQ LWLAA Sbjct 191 YLCSSLVASLHHQQLDSLISEAETRGITGYNPLAGPLRVQANNPQQQGLRREYQQLWLAA 250 Query 121 FSTLPGNTRDPSWAAILQGLEEPYCAFVERLNVALDNGLPEGTPKEPILRSLAYSNANKE 180 F+ LPG+ +DPSWA+ILQGLEEPY AFVERLN+ALDNGLPEGTPK+PILRSLAYSNANKE Sbjct 251 FAALPGSAKDPSWASILQGLEEPYHAFVERLNIALDNGLPEGTPKDPILRSLAYSNANKE 310 Query 181 CQKILQARGHTNSPLGEMLRTCQAWTPKDKTKVL 214 CQK+LQARGHTNSPLG+MLR CQAWTPKDKTKVL Sbjct 311 CQKLLQARGHTNSPLGDMLRACQAWTPKDKTKVL 344 >RecName: Full=Gag-Pro polyprotein; AltName: Full=Pr76Gag-Pro; Contains: RecName: Full=Matrix protein p19; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p15-pro; Short=NC'; Short=NC-pro; Contains: RecName: Full=Protease; Short=PR; Contains: RecName: Full=p1; Contains: RecName: Full=Transframe peptide; Short=TFP; AltName: Full=p8 [Human T-cell lymphotrophic virus type 1 (strain ATK)] Sequence ID: P10274.3 Length: 651 Range 1: 131 to 344 Score:389 bits(998), Expect:3e-132, Method:Compositional matrix adjust., Identities:183/214(86%), Positives:201/214(93%), Gaps:0/214(0%) Query 1 PILHPPGAPSAHRPWQMKDLQAIKQEVSSSALGSPQFMQTLRLAVQQFDPTAKDLQDLLQ 60 P++HP GAP HRPWQMKDLQAIKQEVS +A GSPQFMQT+RLAVQQFDPTAKDLQDLLQ Sbjct 131 PVMHPHGAPPNHRPWQMKDLQAIKQEVSQAAPGSPQFMQTIRLAVQQFDPTAKDLQDLLQ 190 Query 61 YLCSSLVVSLHHQQLNTLITEAETRGMTGYNPMAGPLRMQANNPAQQGLRREYQNLWLAA 120 YLCSSLV SLHHQQL++LI+EAETRG+TGYNP+AGPLR+QANNP QQGLRREYQ LWLAA Sbjct 191 YLCSSLVASLHHQQLDSLISEAETRGITGYNPLAGPLRVQANNPQQQGLRREYQQLWLAA 250 Query 121 FSTLPGNTRDPSWAAILQGLEEPYCAFVERLNVALDNGLPEGTPKEPILRSLAYSNANKE 180 F+ LPG+ +DPSWA+ILQGLEEPY AFVERLN+ALDNGLPEGTPK+PILRSLAYSNANKE Sbjct 251 FAALPGSAKDPSWASILQGLEEPYHAFVERLNIALDNGLPEGTPKDPILRSLAYSNANKE 310 Query 181 CQKILQARGHTNSPLGEMLRTCQAWTPKDKTKVL 214 CQK+LQARGHTNSPLG+MLR CQ WTPKDKTKVL Sbjct 311 CQKLLQARGHTNSPLGDMLRACQTWTPKDKTKVL 344 >RecName: Full=Gag-Pro polyprotein; AltName: Full=Pr76Gag-Pro; Contains: RecName: Full=Matrix protein p19; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p15-pro; Short=NC'; Short=NC-pro; Contains: RecName: Full=Protease; Short=PR; Contains: RecName: Full=p1; Contains: RecName: Full=Transframe peptide; Short=TFP; AltName: Full=p8; AltName: Full=pX [HTLV-3 strain 2026ND] Sequence ID: Q0R5R3.3 Length: 584 Range 1: 124 to 337 Score:386 bits(992), Expect:3e-132, Method:Compositional matrix adjust., Identities:183/214(86%), Positives:200/214(93%), Gaps:0/214(0%) Query 1 PILHPPGAPSAHRPWQMKDLQAIKQEVSSSALGSPQFMQTLRLAVQQFDPTAKDLQDLLQ 60 PILHP GAP+AHRPWQMKDLQAIKQEVSSSA GSPQFMQT+RLAVQQFDPTAKDL DLLQ Sbjct 124 PILHPHGAPAAHRPWQMKDLQAIKQEVSSSAPGSPQFMQTIRLAVQQFDPTAKDLHDLLQ 183 Query 61 YLCSSLVVSLHHQQLNTLITEAETRGMTGYNPMAGPLRMQANNPAQQGLRREYQNLWLAA 120 YLCSSLV SLHHQQL TLI +AET+G+TGYNP+AGPLR+QANNP QQGLR+EYQNLWL+A Sbjct 184 YLCSSLVASLHHQQLETLIAQAETQGITGYNPLAGPLRIQANNPNQQGLRKEYQNLWLSA 243 Query 121 FSTLPGNTRDPSWAAILQGLEEPYCAFVERLNVALDNGLPEGTPKEPILRSLAYSNANKE 180 FS LPGNT+DP+WAAILQG EEP+ +FVERLNVALDNGLPEGTPK+PILRSLAYSNANKE Sbjct 244 FSALPGNTKDPTWAAILQGPEEPFGSFVERLNVALDNGLPEGTPKDPILRSLAYSNANKE 303 Query 181 CQKILQARGHTNSPLGEMLRTCQAWTPKDKTKVL 214 CQK+LQARG TNSPLGEMLR CQ WTP+DK K+L Sbjct 304 CQKLLQARGQTNSPLGEMLRACQTWTPRDKNKIL 337 >RecName: Full=Gag-Pro polyprotein; AltName: Full=Pr76Gag-Pro; Contains: RecName: Full=Matrix protein p19; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p15-pro; Short=NC'; Short=NC-pro; Contains: RecName: Full=Protease; Short=PR; Contains: RecName: Full=p1; Contains: RecName: Full=Transframe peptide; Short=TFP; AltName: Full=p8 [HTLV-1 isolate Mel 15] Sequence ID: P0C210.2 Length: 651 Range 1: 131 to 344 Score:385 bits(989), Expect:5e-131, Method:Compositional matrix adjust., Identities:181/214(85%), Positives:199/214(92%), Gaps:0/214(0%) Query 1 PILHPPGAPSAHRPWQMKDLQAIKQEVSSSALGSPQFMQTLRLAVQQFDPTAKDLQDLLQ 60 P++HP G P HRPWQMKDLQAIKQEVS +A GSPQFMQT+RLAVQQFDPTAKDLQDLLQ Sbjct 131 PVMHPHGVPPTHRPWQMKDLQAIKQEVSQAAPGSPQFMQTIRLAVQQFDPTAKDLQDLLQ 190 Query 61 YLCSSLVVSLHHQQLNTLITEAETRGMTGYNPMAGPLRMQANNPAQQGLRREYQNLWLAA 120 YLCSSLV SLHHQQL++LI+EAETRG+TGYNP+AGPLR+QANNP QQGLRREYQ LWL A Sbjct 191 YLCSSLVASLHHQQLDSLISEAETRGITGYNPLAGPLRVQANNPQQQGLRREYQQLWLTA 250 Query 121 FSTLPGNTRDPSWAAILQGLEEPYCAFVERLNVALDNGLPEGTPKEPILRSLAYSNANKE 180 F+ LPG+ +DPSWA+ILQGLEEPY FVERLNVALDNGLPEGTPK+PILRSLAYSNANKE Sbjct 251 FAALPGSAKDPSWASILQGLEEPYHTFVERLNVALDNGLPEGTPKDPILRSLAYSNANKE 310 Query 181 CQKILQARGHTNSPLGEMLRTCQAWTPKDKTKVL 214 CQK+LQARGHTNSPLG+MLR CQAWTP+DKTKVL Sbjct 311 CQKLLQARGHTNSPLGDMLRACQAWTPRDKTKVL 344 >RecName: Full=Gag-Pro-Pol polyprotein; AltName: Full=Pr160Gag-Pro-Pol; Contains: RecName: Full=Matrix protein p19; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p15-pro; Short=NC'; Short=NC-pro; Contains: RecName: Full=Protease; Short=PR; Contains: RecName: Full=p1; Contains: RecName: Full=Reverse transcriptase/ribonuclease H, p49 subunit; Short=p49 RT; Contains: RecName: Full=Reverse transcriptase/ribonuclease H, p62 subunit; Short=p62 RT; Contains: RecName: Full=Integrase; Short=IN [Human T-cell lymphotrophic virus type 1 (Caribbean isolate)] Sequence ID: P14078.3 Length: 1462 Range 1: 131 to 344 Score:391 bits(1004), Expect:3e-126, Method:Compositional matrix adjust., Identities:184/214(86%), Positives:202/214(94%), Gaps:0/214(0%) Query 1 PILHPPGAPSAHRPWQMKDLQAIKQEVSSSALGSPQFMQTLRLAVQQFDPTAKDLQDLLQ 60 P++HP GAP HRPWQMKDLQAIKQEVS +A GSPQFMQT+RLAVQQFDPTAKDLQDLLQ Sbjct 131 PVMHPHGAPPNHRPWQMKDLQAIKQEVSQAAPGSPQFMQTIRLAVQQFDPTAKDLQDLLQ 190 Query 61 YLCSSLVVSLHHQQLNTLITEAETRGMTGYNPMAGPLRMQANNPAQQGLRREYQNLWLAA 120 YLCSSLV SLHHQQL++LI+EAETRG+TGYNP+AGPLR+QANNP QQGLRREYQ LWLAA Sbjct 191 YLCSSLVASLHHQQLDSLISEAETRGITGYNPLAGPLRVQANNPQQQGLRREYQQLWLAA 250 Query 121 FSTLPGNTRDPSWAAILQGLEEPYCAFVERLNVALDNGLPEGTPKEPILRSLAYSNANKE 180 F+ LPG+ +DPSWA+ILQGLEEPY AFVERLN+ALDNGLPEGTPK+PILRSLAYSNANKE Sbjct 251 FAALPGSAKDPSWASILQGLEEPYHAFVERLNIALDNGLPEGTPKDPILRSLAYSNANKE 310 Query 181 CQKILQARGHTNSPLGEMLRTCQAWTPKDKTKVL 214 CQK+LQARGHTNSPLG+MLR CQAWTPKDKTKVL Sbjct 311 CQKLLQARGHTNSPLGDMLRACQAWTPKDKTKVL 344 >RecName: Full=Gag-Pro-Pol polyprotein; AltName: Full=Pr160Gag-Pro-Pol; Contains: RecName: Full=Matrix protein p19; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p15-pro; Short=NC'; Short=NC-pro; Contains: RecName: Full=Protease; Short=PR; Contains: RecName: Full=p1; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Human T-cell leukemia virus 3 (strain Pyl43)] Sequence ID: Q4U0X6.4 Length: 1440 Range 1: 124 to 337 Score:389 bits(1000), Expect:9e-126, Method:Compositional matrix adjust., Identities:183/214(86%), Positives:200/214(93%), Gaps:0/214(0%) Query 1 PILHPPGAPSAHRPWQMKDLQAIKQEVSSSALGSPQFMQTLRLAVQQFDPTAKDLQDLLQ 60 P+LHP GAP+ HRPWQMKDLQAIKQEVSSSA GSPQFMQT+RLAVQQFDPTAKDL DLLQ Sbjct 124 PVLHPHGAPATHRPWQMKDLQAIKQEVSSSAPGSPQFMQTVRLAVQQFDPTAKDLHDLLQ 183 Query 61 YLCSSLVVSLHHQQLNTLITEAETRGMTGYNPMAGPLRMQANNPAQQGLRREYQNLWLAA 120 YLCSSLV SLHHQQL TLI +AET+G+TGYNP+AGPLR+QANNP QQGLRREYQNLWL+A Sbjct 184 YLCSSLVASLHHQQLETLIAQAETQGITGYNPLAGPLRVQANNPNQQGLRREYQNLWLSA 243 Query 121 FSTLPGNTRDPSWAAILQGLEEPYCAFVERLNVALDNGLPEGTPKEPILRSLAYSNANKE 180 FS LPGNT+DP+WAAILQG EEP+C+FVERLNVALDNGLPEGTPK+PILRSLAYSNANKE Sbjct 244 FSALPGNTKDPTWAAILQGPEEPFCSFVERLNVALDNGLPEGTPKDPILRSLAYSNANKE 303 Query 181 CQKILQARGHTNSPLGEMLRTCQAWTPKDKTKVL 214 CQK+LQARG TNSPLGEMLR CQ WTP+DK K+L Sbjct 304 CQKLLQARGQTNSPLGEMLRACQTWTPRDKNKIL 337 >RecName: Full=Gag-Pro-Pol polyprotein; AltName: Full=Pr160Gag-Pro-Pol; Contains: RecName: Full=Matrix protein p19; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p15-pro; Short=NC'; Short=NC-pro; Contains: RecName: Full=Protease; Short=PR; Contains: RecName: Full=p1; Contains: RecName: Full=Reverse transcriptase/ribonuclease H, p49 subunit; Short=p49 RT; Contains: RecName: Full=Reverse transcriptase/ribonuclease H, p62 subunit; Short=p62 RT; Contains: RecName: Full=Integrase; Short=IN [Human T-cell lymphotrophic virus type 1 (strain ATK)] Sequence ID: P03362.3 Length: 1462 Range 1: 131 to 344 Score:389 bits(1000), Expect:1e-125, Method:Compositional matrix adjust., Identities:183/214(86%), Positives:201/214(93%), Gaps:0/214(0%) Query 1 PILHPPGAPSAHRPWQMKDLQAIKQEVSSSALGSPQFMQTLRLAVQQFDPTAKDLQDLLQ 60 P++HP GAP HRPWQMKDLQAIKQEVS +A GSPQFMQT+RLAVQQFDPTAKDLQDLLQ Sbjct 131 PVMHPHGAPPNHRPWQMKDLQAIKQEVSQAAPGSPQFMQTIRLAVQQFDPTAKDLQDLLQ 190 Query 61 YLCSSLVVSLHHQQLNTLITEAETRGMTGYNPMAGPLRMQANNPAQQGLRREYQNLWLAA 120 YLCSSLV SLHHQQL++LI+EAETRG+TGYNP+AGPLR+QANNP QQGLRREYQ LWLAA Sbjct 191 YLCSSLVASLHHQQLDSLISEAETRGITGYNPLAGPLRVQANNPQQQGLRREYQQLWLAA 250 Query 121 FSTLPGNTRDPSWAAILQGLEEPYCAFVERLNVALDNGLPEGTPKEPILRSLAYSNANKE 180 F+ LPG+ +DPSWA+ILQGLEEPY AFVERLN+ALDNGLPEGTPK+PILRSLAYSNANKE Sbjct 251 FAALPGSAKDPSWASILQGLEEPYHAFVERLNIALDNGLPEGTPKDPILRSLAYSNANKE 310 Query 181 CQKILQARGHTNSPLGEMLRTCQAWTPKDKTKVL 214 CQK+LQARGHTNSPLG+MLR CQ WTPKDKTKVL Sbjct 311 CQKLLQARGHTNSPLGDMLRACQTWTPKDKTKVL 344 >RecName: Full=Gag-Pro-Pol polyprotein; AltName: Full=Pr160Gag-Pro-Pol; Contains: RecName: Full=Matrix protein p19; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p15-pro; Short=NC'; Short=NC-pro; Contains: RecName: Full=Protease; Short=PR; Contains: RecName: Full=p1; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [HTLV-3 strain 2026ND] Sequence ID: Q0R5R2.3 Length: 1440 Range 1: 124 to 337 Score:386 bits(992), Expect:1e-124, Method:Compositional matrix adjust., Identities:183/214(86%), Positives:200/214(93%), Gaps:0/214(0%) Query 1 PILHPPGAPSAHRPWQMKDLQAIKQEVSSSALGSPQFMQTLRLAVQQFDPTAKDLQDLLQ 60 PILHP GAP+AHRPWQMKDLQAIKQEVSSSA GSPQFMQT+RLAVQQFDPTAKDL DLLQ Sbjct 124 PILHPHGAPAAHRPWQMKDLQAIKQEVSSSAPGSPQFMQTIRLAVQQFDPTAKDLHDLLQ 183 Query 61 YLCSSLVVSLHHQQLNTLITEAETRGMTGYNPMAGPLRMQANNPAQQGLRREYQNLWLAA 120 YLCSSLV SLHHQQL TLI +AET+G+TGYNP+AGPLR+QANNP QQGLR+EYQNLWL+A Sbjct 184 YLCSSLVASLHHQQLETLIAQAETQGITGYNPLAGPLRIQANNPNQQGLRKEYQNLWLSA 243 Query 121 FSTLPGNTRDPSWAAILQGLEEPYCAFVERLNVALDNGLPEGTPKEPILRSLAYSNANKE 180 FS LPGNT+DP+WAAILQG EEP+ +FVERLNVALDNGLPEGTPK+PILRSLAYSNANKE Sbjct 244 FSALPGNTKDPTWAAILQGPEEPFGSFVERLNVALDNGLPEGTPKDPILRSLAYSNANKE 303 Query 181 CQKILQARGHTNSPLGEMLRTCQAWTPKDKTKVL 214 CQK+LQARG TNSPLGEMLR CQ WTP+DK K+L Sbjct 304 CQKLLQARGQTNSPLGEMLRACQTWTPRDKNKIL 337 >RecName: Full=Gag-Pro-Pol polyprotein; AltName: Full=Pr160Gag-Pro-Pol; Contains: RecName: Full=Matrix protein p19; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p15-pro; Short=NC'; Short=NC-pro; Contains: RecName: Full=Protease; Short=PR; Contains: RecName: Full=p1; Contains: RecName: Full=Reverse transcriptase/ribonuclease H, p49 subunit; Short=p49 RT; Contains: RecName: Full=Reverse transcriptase/ribonuclease H, p62 subunit; Short=p62 RT; Contains: RecName: Full=Integrase; Short=IN [HTLV-1 isolate Mel 15] Sequence ID: P0C211.2 Length: 1462 Range 1: 131 to 344 Score:386 bits(992), Expect:2e-124, Method:Compositional matrix adjust., Identities:181/214(85%), Positives:199/214(92%), Gaps:0/214(0%) Query 1 PILHPPGAPSAHRPWQMKDLQAIKQEVSSSALGSPQFMQTLRLAVQQFDPTAKDLQDLLQ 60 P++HP G P HRPWQMKDLQAIKQEVS +A GSPQFMQT+RLAVQQFDPTAKDLQDLLQ Sbjct 131 PVMHPHGVPPTHRPWQMKDLQAIKQEVSQAAPGSPQFMQTIRLAVQQFDPTAKDLQDLLQ 190 Query 61 YLCSSLVVSLHHQQLNTLITEAETRGMTGYNPMAGPLRMQANNPAQQGLRREYQNLWLAA 120 YLCSSLV SLHHQQL++LI+EAETRG+TGYNP+AGPLR+QANNP QQGLRREYQ LWL A Sbjct 191 YLCSSLVASLHHQQLDSLISEAETRGITGYNPLAGPLRVQANNPQQQGLRREYQQLWLTA 250 Query 121 FSTLPGNTRDPSWAAILQGLEEPYCAFVERLNVALDNGLPEGTPKEPILRSLAYSNANKE 180 F+ LPG+ +DPSWA+ILQGLEEPY FVERLNVALDNGLPEGTPK+PILRSLAYSNANKE Sbjct 251 FAALPGSAKDPSWASILQGLEEPYHTFVERLNVALDNGLPEGTPKDPILRSLAYSNANKE 310 Query 181 CQKILQARGHTNSPLGEMLRTCQAWTPKDKTKVL 214 CQK+LQARGHTNSPLG+MLR CQAWTP+DKTKVL Sbjct 311 CQKLLQARGHTNSPLGDMLRACQAWTPRDKTKVL 344 >RecName: Full=Gag polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p12-gag [Bovine leukemia virus (AUSTRALIAN ISOLATE)] Sequence ID: P25058.4 Length: 392 Range 1: 120 to 322 Score:180 bits(456), Expect:6e-54, Method:Compositional matrix adjust., Identities:90/203(44%), Positives:123/203(60%), Gaps:0/203(0%) Query 12 HRPWQMKDLQAIKQEVSSSALGSPQFMQTLRLAVQQFDPTAKDLQDLLQYLCSSLVVSLH 71 HR W +++LQ IK+E+ + A GS ++QTLRLA+ Q DPT DL+ L QY+ S + + H Sbjct 120 HRAWALRELQDIKKEIENKAPGSQVWIQTLRLAILQADPTPADLEQLCQYIASPVDQTAH 179 Query 72 HQQLNTLITEAETRGMTGYNPMAGPLRMQANNPAQQGLRREYQNLWLAAFSTLPGNTRDP 131 L I + G+NP G L Q+ P LR +YQNLWL A+ LP Sbjct 180 MTSLTAAIAAEAANTLQGFNPKMGTLTQQSAQPNAGDLRSQYQNLWLQAWKNLPTRPSVQ 239 Query 132 SWAAILQGLEEPYCAFVERLNVALDNGLPEGTPKEPILRSLAYSNANKECQKILQARGHT 191 W+ I+QG E Y FV RL ++L + LP+G PKEPI+ SL+Y+NANKECQ+ILQ RG Sbjct 240 PWSTIVQGPAESYVEFVNRLQISLADNLPDGVPKEPIIDSLSYANANKECQQILQGRGLV 299 Query 192 NSPLGEMLRTCQAWTPKDKTKVL 214 +P+G+ L+ C W PK K + Sbjct 300 AAPVGQKLQACAHWAPKTKQPAI 322 >RecName: Full=Gag-Pro polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p12-pro; Contains: RecName: Full=Protease; Contains: RecName: Full=p13 [Bovine leukemia virus (AUSTRALIAN ISOLATE)] Sequence ID: P0DOI1.1 Length: 571 Range 1: 120 to 318 Score:180 bits(457), Expect:1e-52, Method:Compositional matrix adjust., Identities:90/199(45%), Positives:122/199(61%), Gaps:0/199(0%) Query 12 HRPWQMKDLQAIKQEVSSSALGSPQFMQTLRLAVQQFDPTAKDLQDLLQYLCSSLVVSLH 71 HR W +++LQ IK+E+ + A GS ++QTLRLA+ Q DPT DL+ L QY+ S + + H Sbjct 120 HRAWALRELQDIKKEIENKAPGSQVWIQTLRLAILQADPTPADLEQLCQYIASPVDQTAH 179 Query 72 HQQLNTLITEAETRGMTGYNPMAGPLRMQANNPAQQGLRREYQNLWLAAFSTLPGNTRDP 131 L I + G+NP G L Q+ P LR +YQNLWL A+ LP Sbjct 180 MTSLTAAIAAEAANTLQGFNPKMGTLTQQSAQPNAGDLRSQYQNLWLQAWKNLPTRPSVQ 239 Query 132 SWAAILQGLEEPYCAFVERLNVALDNGLPEGTPKEPILRSLAYSNANKECQKILQARGHT 191 W+ I+QG E Y FV RL ++L + LP+G PKEPI+ SL+Y+NANKECQ+ILQ RG Sbjct 240 PWSTIVQGPAESYVEFVNRLQISLADNLPDGVPKEPIIDSLSYANANKECQQILQGRGLV 299 Query 192 NSPLGEMLRTCQAWTPKDK 210 +P+G+ L+ C W PK K Sbjct 300 AAPVGQKLQACAHWAPKTK 318 >RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p12-pro; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Bovine leukemia virus (AUSTRALIAN ISOLATE)] Sequence ID: P25059.2 Length: 1416 Range 1: 120 to 318 Score:179 bits(455), Expect:7e-51, Method:Compositional matrix adjust., Identities:90/199(45%), Positives:122/199(61%), Gaps:0/199(0%) Query 12 HRPWQMKDLQAIKQEVSSSALGSPQFMQTLRLAVQQFDPTAKDLQDLLQYLCSSLVVSLH 71 HR W +++LQ IK+E+ + A GS ++QTLRLA+ Q DPT DL+ L QY+ S + + H Sbjct 120 HRAWALRELQDIKKEIENKAPGSQVWIQTLRLAILQADPTPADLEQLCQYIASPVDQTAH 179 Query 72 HQQLNTLITEAETRGMTGYNPMAGPLRMQANNPAQQGLRREYQNLWLAAFSTLPGNTRDP 131 L I + G+NP G L Q+ P LR +YQNLWL A+ LP Sbjct 180 MTSLTAAIAAEAANTLQGFNPQNGTLTQQSAQPNAGDLRSQYQNLWLQAWKNLPTRPSVQ 239 Query 132 SWAAILQGLEEPYCAFVERLNVALDNGLPEGTPKEPILRSLAYSNANKECQKILQARGHT 191 W+ I+QG E Y FV RL ++L + LP+G PKEPI+ SL+Y+NANKECQ+ILQ RG Sbjct 240 PWSTIVQGPAESYVEFVNRLQISLADNLPDGVPKEPIIDSLSYANANKECQQILQGRGLV 299 Query 192 NSPLGEMLRTCQAWTPKDK 210 +P+G+ L+ C W PK K Sbjct 300 AAPVGQKLQACAHWAPKTK 318 >RecName: Full=Gag-Pro polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p12-pro; Contains: RecName: Full=Protease; Contains: RecName: Full=p13 [Bovine leukemia virus (JAPANESE ISOLATE BLV-1)] Sequence ID: P0DOI0.1 Length: 571 Range 1: 120 to 321 Score:165 bits(418), Expect:6e-47, Method:Compositional matrix adjust., Identities:91/204(45%), Positives:124/204(60%), Gaps:3/204(1%) Query 12 HRPWQMKDLQAIKQEVSSSALGSPQFMQTLRLAVQQFDPTAKDLQDLLQYLCSSLVVSLH 71 HR W +++LQ IK+E+ + A GS ++QTLRLA+ Q DPT DL+ L QY+ S + + H Sbjct 120 HRAWALRELQDIKKEIENKAPGSQVWIQTLRLAILQADPTPADLEQLCQYIASPVDQTAH 179 Query 72 HQQLNTLITEAETRG-MTGYNPMAGPLRMQANNPAQQGLRREYQNLWLAAFSTLPGNTRD 130 L I AE + G+NP G L Q+ P LR +YQNLWL A LP Sbjct 180 MTSLTAAIAAAEAANTLQGFNPKTGTLTQQSAQPNAGDLRSQYQNLWLQAGKNLPTRPSA 239 Query 131 PSWAAILQGLEEPYCAFVERLNVALDNGLPEGTPKEPILRSLAYSNANKECQKILQARGH 190 P W+ I+QG E FV RL ++L + LP+G PKEPI+ SL+Y+NAN+ECQ+ILQ RG Sbjct 240 P-WSTIVQGPAESSVEFVNRLQISLADNLPDGVPKEPIIDSLSYANANRECQQILQGRGP 298 Query 191 TNSPLGEMLRTCQAWTPKDKTKVL 214 + +G+ L+ C W PK+K L Sbjct 299 VAA-VGQKLQACAQWAPKNKQPAL 321 >RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p12-pro; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Bovine leukemia virus (JAPANESE ISOLATE BLV-1)] Sequence ID: P03361.2 Length: 1416 Range 1: 120 to 321 Score:164 bits(416), Expect:1e-45, Method:Compositional matrix adjust., Identities:91/204(45%), Positives:124/204(60%), Gaps:3/204(1%) Query 12 HRPWQMKDLQAIKQEVSSSALGSPQFMQTLRLAVQQFDPTAKDLQDLLQYLCSSLVVSLH 71 HR W +++LQ IK+E+ + A GS ++QTLRLA+ Q DPT DL+ L QY+ S + + H Sbjct 120 HRAWALRELQDIKKEIENKAPGSQVWIQTLRLAILQADPTPADLEQLCQYIASPVDQTAH 179 Query 72 HQQLNTLITEAETRG-MTGYNPMAGPLRMQANNPAQQGLRREYQNLWLAAFSTLPGNTRD 130 L I AE + G+NP G L Q+ P LR +YQNLWL A LP Sbjct 180 MTSLTAAIAAAEAANTLQGFNPKTGTLTQQSAQPNAGDLRSQYQNLWLQAGKNLPTRPSA 239 Query 131 PSWAAILQGLEEPYCAFVERLNVALDNGLPEGTPKEPILRSLAYSNANKECQKILQARGH 190 P W+ I+QG E FV RL ++L + LP+G PKEPI+ SL+Y+NAN+ECQ+ILQ RG Sbjct 240 P-WSTIVQGPAESSVEFVNRLQISLADNLPDGVPKEPIIDSLSYANANRECQQILQGRGP 298 Query 191 TNSPLGEMLRTCQAWTPKDKTKVL 214 + +G+ L+ C W PK+K L Sbjct 299 VAA-VGQKLQACAQWAPKNKQPAL 321 >RecName: Full=Gag polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p12-gag [Bovine leukemia virus (JAPANESE ISOLATE BLV-1)] Sequence ID: P03344.3 Length: 392 Range 1: 120 to 302 Score:100 bits(248), Expect:1e-23, Method:Compositional matrix adjust., Identities:68/186(37%), Positives:97/186(52%), Gaps:11/186(5%) Query 12 HRPWQMKDLQAIKQEVSSSALGSPQFMQTLRLAVQQFDPTAKDLQDLLQYLCSSLVVSLH 71 HR W +++LQ IK+E+ + A GS ++QTLRLA+ Q DPT DL+ L QY+ S + + H Sbjct 120 HRAWALRELQDIKKEIENKAPGSQVWIQTLRLAILQADPTPADLEQLCQYIASPVDQTAH 179 Query 72 HQQLNTLITEAE----TRGMTGYNPMAGPLRMQANNPAQQGLRREYQNLWLAAFSTLPGN 127 L I AE +R +T P G L Q+ P LR +YQNLWL A Sbjct 180 MTSLTAAIAAAEAATPSRVLT---PKTGTLTQQSAQPNAGDLRSQYQNLWLQAGKISLLV 236 Query 128 TRDPSWAAILQGLEEPYCAFVERLNVALDNGLPEGTPKEPILRSLAY----SNANKECQK 183 + W+ I+QG E FV RL ++L + LP+G + P+L L + +K C+ Sbjct 237 LQLQPWSTIVQGPAESSVEFVNRLQISLADNLPDGVLRNPLLTPLVMQMLTESVSKFCRG 296 Query 184 ILQARG 189 RG Sbjct 297 EASGRG 302 >RecName: Full=Endogenous retrovirus group K member 5 Gag polyprotein; AltName: Full=HERV-K(II) Gag protein; AltName: Full=HERV-K_3q12.3 provirus ancestral Gag polyprotein; Short=Gag polyprotein [Homo sapiens] Sequence ID: Q9HDB9.3 Length: 667 Range 1: 428 to 492 Score:44.3 bits(103), Expect:4e-04, Method:Compositional matrix adjust., Identities:24/65(37%), Positives:35/65(53%), Gaps:4/65(6%) Query 126 GNTRDPSWA----AILQGLEEPYCAFVERLNVALDNGLPEGTPKEPILRSLAYSNANKEC 181 G +DP A +I QG +EPY FV RL A + + ++ I+ +AY NAN EC Sbjct 428 GKIQDPGTAFPINSIRQGSKEPYPDFVARLQDAAQKSITDDNARKVIVELMAYENANPEC 487 Query 182 QKILQ 186 Q ++ Sbjct 488 QSAIK 492 >RecName: Full=Endogenous retrovirus group K member 113 Gag polyprotein; AltName: Full=HERV-K113 Gag protein; AltName: Full=HERV-K_19p13.11 provirus ancestral Gag polyprotein; Short=Gag polyprotein [Homo sapiens] Sequence ID: P62684.2 Length: 666 Range 1: 433 to 493 Score:43.5 bits(101), Expect:6e-04, Method:Compositional matrix adjust., Identities:23/62(37%), Positives:35/62(56%), Gaps:1/62(1%) Query 125 PGNTRDPSWAAILQGLEEPYCAFVERLNVALDNGLPEGTPKEPILRSLAYSNANKECQKI 184 PG+T PS+ + QG +EPY FV RL + + ++ I+ +AY NAN ECQ Sbjct 433 PGST-CPSFNTVRQGSKEPYPDFVARLQDVAQKSIADEKARKVIVELMAYENANPECQSA 491 Query 185 LQ 186 ++ Sbjct 492 IK 493 >RecName: Full=Endogenous retrovirus group K member 7 Gag polyprotein; AltName: Full=HERV-K(III) Gag protein; AltName: Full=HERV-K102 Gag protein; AltName: Full=HERV-K_1q22 provirus ancestral Gag polyprotein; Short=Gag polyprotein [Homo sapiens] Sequence ID: P63130.2 Length: 666 Range 1: 433 to 493 Score:43.5 bits(101), Expect:7e-04, Method:Compositional matrix adjust., Identities:23/62(37%), Positives:35/62(56%), Gaps:1/62(1%) Query 125 PGNTRDPSWAAILQGLEEPYCAFVERLNVALDNGLPEGTPKEPILRSLAYSNANKECQKI 184 PG+T PS+ + QG +EPY FV RL + + ++ I+ +AY NAN ECQ Sbjct 433 PGST-CPSFNTVRQGSKEPYPDFVARLQDVAQKSIADEKARKVIVELMAYENANPECQSA 491 Query 185 LQ 186 ++ Sbjct 492 IK 493 >RecName: Full=Endogenous retrovirus group K member 6 Gag polyprotein; AltName: Full=HERV-K(C7) Gag protein; AltName: Full=HERV-K(HML-2.HOM) Gag protein; AltName: Full=HERV-K108 Gag protein; AltName: Full=HERV-K_7p22.1 provirus ancestral Gag polyprotein; Short=Gag polyprotein [Homo sapiens] Sequence ID: Q7LDI9.3 Length: 666 Range 1: 433 to 493 Score:43.5 bits(101), Expect:7e-04, Method:Compositional matrix adjust., Identities:23/62(37%), Positives:35/62(56%), Gaps:1/62(1%) Query 125 PGNTRDPSWAAILQGLEEPYCAFVERLNVALDNGLPEGTPKEPILRSLAYSNANKECQKI 184 PG+T PS+ + QG +EPY FV RL + + ++ I+ +AY NAN ECQ Sbjct 433 PGST-CPSFNTVRQGSKEPYPDFVARLQDVAQKSIADEKARKVIVELMAYENANPECQSA 491 Query 185 LQ 186 ++ Sbjct 492 IK 493 >RecName: Full=Endogenous retrovirus group K member 9 Gag polyprotein; AltName: Full=HERV-K(C6) Gag protein; AltName: Full=HERV-K109 Gag protein; AltName: Full=HERV-K_6q14.1 provirus ancestral Gag polyprotein; Short=Gag polyprotein [Homo sapiens] Sequence ID: P63126.2 Length: 666 Range 1: 433 to 493 Score:43.5 bits(101), Expect:7e-04, Method:Compositional matrix adjust., Identities:23/62(37%), Positives:35/62(56%), Gaps:1/62(1%) Query 125 PGNTRDPSWAAILQGLEEPYCAFVERLNVALDNGLPEGTPKEPILRSLAYSNANKECQKI 184 PG+T PS+ + QG +EPY FV RL + + ++ I+ +AY NAN ECQ Sbjct 433 PGST-CPSFNTVRQGSKEPYPDFVARLQDVAQKSIADEKARKVIVELMAYENANPECQSA 491 Query 185 LQ 186 ++ Sbjct 492 IK 493 >RecName: Full=Endogenous retrovirus group K member 8 Gag polyprotein; AltName: Full=HERV-K115 Gag protein; AltName: Full=HERV-K_8p23.1 provirus ancestral Gag polyprotein; Short=Gag polyprotein [Homo sapiens] Sequence ID: P62685.2 Length: 647 Range 1: 433 to 493 Score:43.5 bits(101), Expect:7e-04, Method:Compositional matrix adjust., Identities:23/62(37%), Positives:35/62(56%), Gaps:1/62(1%) Query 125 PGNTRDPSWAAILQGLEEPYCAFVERLNVALDNGLPEGTPKEPILRSLAYSNANKECQKI 184 PG+T PS+ + QG +EPY FV RL + + ++ I+ +AY NAN ECQ Sbjct 433 PGST-CPSFNTVRQGSKEPYPDFVARLQDVAQKSIADEKARKVIVELMAYENANPECQSA 491 Query 185 LQ 186 ++ Sbjct 492 IK 493 >RecName: Full=Endogenous retrovirus group K member 9 Pol protein; AltName: Full=HERV-K(C6) Gag-Pol protein; AltName: Full=HERV-K109 Gag-Pol protein; AltName: Full=HERV-K_6q14.1 provirus ancestral Gag-Pol polyprotein; Includes: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Includes: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=p66 RT [Homo sapiens] Sequence ID: P63128.3 Length: 1117 Range 1: 433 to 493 Score:43.1 bits(100), Expect:0.001, Method:Compositional matrix adjust., Identities:23/62(37%), Positives:35/62(56%), Gaps:1/62(1%) Query 125 PGNTRDPSWAAILQGLEEPYCAFVERLNVALDNGLPEGTPKEPILRSLAYSNANKECQKI 184 PG+T PS+ + QG +EPY FV RL + + ++ I+ +AY NAN ECQ Sbjct 433 PGST-CPSFNTVRQGSKEPYPDFVARLQDVAQKSIADEKARKVIVELMAYENANPECQSA 491 Query 185 LQ 186 ++ Sbjct 492 IK 493 >RecName: Full=Endogenous retrovirus group K member 24 Gag polyprotein; AltName: Full=HERV-K101 Gag protein; AltName: Full=HERV-K_22q11.21 provirus ancestral Gag polyprotein; Short=Gag polyprotein [Homo sapiens] Sequence ID: P63145.2 Length: 666 Range 1: 438 to 493 Score:42.7 bits(99), Expect:0.001, Method:Compositional matrix adjust., Identities:20/56(36%), Positives:31/56(55%), Gaps:0/56(0%) Query 131 PSWAAILQGLEEPYCAFVERLNVALDNGLPEGTPKEPILRSLAYSNANKECQKILQ 186 PS+ + QG +EPY FV RL + + ++ I+ +AY NAN ECQ ++ Sbjct 438 PSFNTVRQGSKEPYPDFVARLQDVAQKSIADEKARKVIVELMAYENANPECQSAIK 493 >RecName: Full=Gag polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=p1; Contains: RecName: Full=Nucleocapsid protein p13; Short=NC [Feline immunodeficiency virus (isolate San Diego)] Sequence ID: P19027.1 Length: 450 Range 1: 253 to 346 Score:42.4 bits(98), Expect:0.002, Method:Compositional matrix adjust., Identities:29/95(31%), Positives:46/95(48%), Gaps:2/95(2%) Query 110 RREYQNLWLAAFSTLPG-NTRDPSWAAILQGLEEPYCAFVERLNVALDNGLPEGTPKEPI 168 R + + +L A L + P + QG +E Y +F++RL +D K + Sbjct 253 RMQCRAWYLEALGKLAAIKAKSPRAVQLRQGAKEDYSSFIDRLFAQIDQEQNTAEVKLYL 312 Query 169 LRSLAYSNANKECQKILQARGHTNSPLGEMLRTCQ 203 +SL+ +NAN EC+K + + S L E LR CQ Sbjct 313 KQSLSIANANAECKKAM-SHLKPESTLEEKLRACQ 346 >RecName: Full=Endogenous retrovirus group K member 10 Gag polyprotein; AltName: Full=HERV-K10 Gag protein; AltName: Full=HERV-K107 Gag protein; AltName: Full=HERV-K_5q33.3 provirus ancestral Gag polyprotein; Short=Gag polyprotein [Homo sapiens] Sequence ID: P87889.4 Length: 666 Range 1: 433 to 493 Score:42.4 bits(98), Expect:0.002, Method:Compositional matrix adjust., Identities:23/62(37%), Positives:34/62(54%), Gaps:1/62(1%) Query 125 PGNTRDPSWAAILQGLEEPYCAFVERLNVALDNGLPEGTPKEPILRSLAYSNANKECQKI 184 PG+T PS+ + QG +EPY FV RL + + + I+ +AY NAN ECQ Sbjct 433 PGST-CPSFNTVRQGSKEPYPDFVARLQDVAQKSIADEKAGKVIVELMAYENANPECQSA 491 Query 185 LQ 186 ++ Sbjct 492 IK 493 >RecName: Full=Gag polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=p1; Contains: RecName: Full=Nucleocapsid protein p13; Short=NC [Feline immunodeficiency virus (isolate Petaluma)] Sequence ID: P16087.1 Length: 450 Range 1: 253 to 346 Score:41.2 bits(95), Expect:0.004, Method:Compositional matrix adjust., Identities:28/95(29%), Positives:46/95(48%), Gaps:2/95(2%) Query 110 RREYQNLWLAAFSTLPG-NTRDPSWAAILQGLEEPYCAFVERLNVALDNGLPEGTPKEPI 168 R + + +L A L + P + QG +E Y +F++RL +D K + Sbjct 253 RMQCRAWYLEALGKLAAIKAKSPRAVQLRQGAKEDYSSFIDRLFAQIDQEQNTAEVKLYL 312 Query 169 LRSLAYSNANKECQKILQARGHTNSPLGEMLRTCQ 203 +SL+ +NAN +C+K + + S L E LR CQ Sbjct 313 KQSLSIANANADCKKAM-SHLKPESTLEEKLRACQ 346 >RecName: Full=Gag polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=p1; Contains: RecName: Full=Nucleocapsid protein p13; Short=NC [Feline immunodeficiency virus (isolate wo)] Sequence ID: Q05313.1 Length: 450 Range 1: 253 to 346 Score:40.8 bits(94), Expect:0.004, Method:Compositional matrix adjust., Identities:28/95(29%), Positives:46/95(48%), Gaps:2/95(2%) Query 110 RREYQNLWLAAFSTLPG-NTRDPSWAAILQGLEEPYCAFVERLNVALDNGLPEGTPKEPI 168 R + + +L A L + P + QG +E Y +F++RL +D K + Sbjct 253 RMQCRAWYLEALGKLAAIKAKSPRAVQLRQGAKEDYSSFIDRLFAQIDQEQNTAEVKLYL 312 Query 169 LRSLAYSNANKECQKILQARGHTNSPLGEMLRTCQ 203 +SL+ +NAN +C+K + + S L E LR CQ Sbjct 313 KQSLSIANANADCKKAM-SHLKPESTLEEKLRACQ 346 >RecName: Full=Endogenous retrovirus group K member 21 Gag polyprotein; AltName: Full=HERV-K_12q14.1 provirus ancestral Gag polyprotein; Short=Gag polyprotein [Homo sapiens] Sequence ID: P62683.2 Length: 666 Range 1: 433 to 493 Score:40.8 bits(94), Expect:0.005, Method:Compositional matrix adjust., Identities:22/62(35%), Positives:34/62(54%), Gaps:1/62(1%) Query 125 PGNTRDPSWAAILQGLEEPYCAFVERLNVALDNGLPEGTPKEPILRSLAYSNANKECQKI 184 PG+T PS+ + Q +EPY FV RL + + ++ I+ +AY NAN ECQ Sbjct 433 PGST-CPSFNTVRQSSKEPYPDFVARLQDVAQKSIADEKARKVIVELMAYENANPECQSA 491 Query 185 LQ 186 ++ Sbjct 492 IK 493 >RecName: Full=Endogenous retrovirus group K member 19 Gag polyprotein; AltName: Full=HERV-K(C19) Gag protein; AltName: Full=HERV-K_19q11 provirus ancestral Gag polyprotein; Short=Gag polyprotein [Homo sapiens] Sequence ID: Q9YNA8.3 Length: 666 Range 1: 433 to 493 Score:39.7 bits(91), Expect:0.013, Method:Compositional matrix adjust., Identities:22/62(35%), Positives:33/62(53%), Gaps:1/62(1%) Query 125 PGNTRDPSWAAILQGLEEPYCAFVERLNVALDNGLPEGTPKEPILRSLAYSNANKECQKI 184 PG+T PS+ + QG +EPY FV RL + ++ I+ +AY N N ECQ Sbjct 433 PGST-CPSFNTVRQGSKEPYPDFVARLQDVAQKSIAIEKARKVIVELMAYENPNPECQSA 491 Query 185 LQ 186 ++ Sbjct 492 IK 493 >RecName: Full=Gag polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=p1; Contains: RecName: Full=Nucleocapsid protein p13; Short=NC [Feline immunodeficiency virus (isolate TM2)] Sequence ID: P31821.1 Length: 449 Range 1: 253 to 346 Score:39.3 bits(90), Expect:0.014, Method:Compositional matrix adjust., Identities:27/95(28%), Positives:46/95(48%), Gaps:2/95(2%) Query 110 RREYQNLWLAAFSTLPG-NTRDPSWAAILQGLEEPYCAFVERLNVALDNGLPEGTPKEPI 168 R + + +L A L + P + QG +E Y +F++RL +D K + Sbjct 253 RMQCRAWYLEALGKLAAIKAKSPRAVQLKQGAKEDYSSFIDRLFAQIDQEQNTAEVKLYL 312 Query 169 LRSLAYSNANKECQKILQARGHTNSPLGEMLRTCQ 203 +SL+ +NAN +C++ + + S L E LR CQ Sbjct 313 KQSLSIANANPDCKRAM-SHLKPESTLEEKLRACQ 346