bg_color white

fetch 5m65
fetch 5m65, type=2fofc

hide everything, resn HOH or resn EDO
hide cartoon, all
show stick, polymer

select ligand, chain A and (resn NAD or resn ADE or resn NA)
select site, byres polymer and not ligand within 6 of ligand
select trash, byres all beyond 15 of ligand
select site, (sidechain or name CA) and site

show sticks, site
isomesh site_mesh, 5m65_2fofc, 1, site, carve=2
set mesh_color, blue, site_mesh
isomesh ligand_mesh, 5m65_2fofc, 1, ligand, carve=2
set mesh_color, red, ligand_mesh

set_bond stick_radius, 0.1, not ligand
color gray70, elem C
color gray30, elem C and chain B
color tv_green, elem C and ligand

hide everything, trash

set_view (\
     0.366293699,   -0.407885402,    0.836282015,\
    -0.678728878,   -0.731914997,   -0.059710618,\
     0.636460483,   -0.545772016,   -0.544973552,\
    -0.000041443,    0.000396097,  -56.153579712,\
    16.434064865,    0.380558848,   -3.865852833,\
    48.708053589,   82.131317139,  -20.000000000 )

set ray_shadows, 0
set ray_opaque_background, 1
set ray_trace_mode, 0
png mesh.png, ray=1, dpi=300