Your results are being filtered to match entrez query: txid2759 [ORGN].

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Format for	PSI-BLAST with inclusion threshold: [?] Format for PSI-BLAST: The Position-Specific Iterated BLAST (PSI-BLAST) program performs iterative searches with a protein query, in which sequences found in one round of search are used to build a custom score model for the next round. more... Inclusion Threshold: This sets the statistical significance threshold for including a sequence in the model used by PSI-BLAST to create the PSSM on the next iteration.

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Alignment Text XML ASN.1 Hit Table(text) Hit Table(csv)	Search Strategies ASN.1	PssmWithParameters ASN.1	[?]

The Download link provides BLAST output that may be used as input to another program. This includes parseable formats such as the tabular report or XML as well as the Search Strategy files read by the BLAST+ applications. More details on the parseable (XML, tabular, and ASN.1) reports can be found at http://www.ncbi.nlm.nih.gov/books/NBK21097/

The following formats are offered under the Alignment section:
1). "Text". Non-HTML standard BLAST report.
2). "XML". XML report based upon the DTD at http://www.ncbi.nlm.nih.gov/data_specs/dtd/NCBI_BlastOutput.dtd
3). "ASN.1" Alignment. This is the alignment written out in Abstract Syntax Notation 1.
4). "Hit Table(text)". The tabular report as text.
5). "Hit Table(csv)". The tabular report ready for import into spread-sheet programs like Excel.

The following report is offered under the Search Strategy section:
1). "ASN.1" Search Strategy. A record of the parameters, query, and database used in the search. This file can be used to start a stand-alone BLAST search, see http://www.ncbi.nlm.nih.gov/books/NBK1763/#CmdLineAppsManual.I455_BLAST_search_stra

PSI blast Iteration 4

ref|XP_006521491.1| (164 letters)

Skip to the first new sequence

RID: REWED1AJ01R (Expires on 05-18 22:27 pm)

Query ID: gi|568993400|ref|XP_006521491.1|; gi|568993400|ref|XP_006521491.1|
Description: PREDICTED: tumor necrosis factor receptor superfamily member 13C isoform X1 [Mus musculus]
Molecule type: amino acid
Query Length: 164


Database Name: refseq_protein
Description: NCBI Protein Reference Sequences See details
Program: BLASTP 2.2.29+ Citation

Reference

Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.

Reference - composition-based statistics starting in round 2

Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.

Other reports: Search Summary [Distance tree of results] [Multiple alignment]

Search Parameters
Search parameter name	Search parameter value
Program	blastp
Word size	3
Expect value	10
Hitlist size	500
Gapcosts	11,1
Matrix	BLOSUM62
Filter string	F
Genetic Code	1
Window Size	40
Threshold	11
Composition-based stats	1

Database
Database parameter name	Database parameter value
Posted date	May 15, 2014 4:49 AM
Number of letters	10,543,566,134
Number of sequences	29,268,900
Entrez query	none

Karlin-Altschul statistics
Params	Ungapped	Gapped
Lambda	0.313986	0.267
K	0.128777	0.0371302
H	0.389274	0.14
Alpha	0.7916	1.9
Alpha_v	4.96466	42.6028
Sigma		43.6362

Descriptions

Run PSI-Blast iteration 5 with max

, Reading indexes 1-5, displaying indexes 1-5, Reading indexes 6-10, displaying indexes 6-10, Reading indexes 11-15, displaying indexes 11-15, Reading indexes 16-20, displaying indexes 16-20, Reading indexes 21-25, displaying indexes 21-25

Sequences producing significant alignments with E-value BETTER than threshold

Select:All None Selected:0 Yellow: sequences scoring below threshold on previous iteration

Sequences producing significant alignments with E-value BETTER than threshold
Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1Select seq ref\|XP_006521491.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C isoform X1 [Mus musculus]	156	156	100%	5e-45	100%	XP_006521491.1(scored below threshold on previous iteration)
2Select seq ref\|NP_082351.1\|	tumor necrosis factor receptor superfamily member 13C [Mus musculus]	151	151	100%	5e-43	93%	NP_082351.1(scored below threshold on previous iteration)
3Select seq ref\|XP_576316.2\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C-like [Rattus norvegicus] >ref\|XP_001077542.1\| PREDICTED: tumor necrosis factor receptor superfamily member 13C-like [Rattus norvegicus]	147	147	88%	2e-41	80%	XP_576316.2(scored below threshold on previous iteration)
4Select seq ref\|XP_005067089.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C [Mesocricetus auratus]	144	144	100%	3e-40	56%	XP_005067089.1(scored below threshold on previous iteration)
5Select seq ref\|XP_003512388.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C [Cricetulus griseus] >ref\|XP_007618644.1\| PREDICTED: tumor necrosis factor receptor superfamily member 13C [Cricetulus griseus]	143	143	100%	1e-39	54%	XP_003512388.1(scored below threshold on previous iteration)
6Select seq ref\|XP_004897796.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C [Heterocephalus glaber]	129	129	100%	2e-34	46%	XP_004897796.1(scored below threshold on previous iteration)
7Select seq ref\|XP_006980269.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C [Peromyscus maniculatus bairdii]	127	127	91%	9e-34	56%	XP_006980269.1(scored below threshold on previous iteration)
8Select seq ref\|XP_004642638.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C [Octodon degus]	125	125	98%	8e-33	41%	XP_004642638.1(scored below threshold on previous iteration)
9Select seq ref\|XP_006934224.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C [Felis catus]	124	124	100%	1e-32	40%	XP_006934224.1(scored below threshold on previous iteration)
10Select seq ref\|XP_004845557.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C [Heterocephalus glaber]	124	124	98%	2e-32	46%	XP_004845557.1(scored below threshold on previous iteration)
11Select seq ref\|XP_005354557.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C [Microtus ochrogaster]	123	123	100%	3e-32	53%	XP_005354557.1(scored below threshold on previous iteration)
12Select seq ref\|XP_003470572.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C [Cavia porcellus]	122	122	98%	5e-32	43%	XP_003470572.1(scored below threshold on previous iteration)
13Select seq ref\|XP_004437976.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C [Ceratotherium simum simum]	122	122	98%	1e-31	44%	XP_004437976.1(scored below threshold on previous iteration)
14Select seq ref\|XP_002831258.2\|	PREDICTED: uncharacterized protein LOC100456696 [Pongo abelii]	120	120	88%	2e-29	39%	XP_002831258.2(scored below threshold on previous iteration)
15Select seq ref\|XP_007974121.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C isoform X1 [Chlorocebus sabaeus]	114	114	98%	1e-28	37%	XP_007974121.1(scored below threshold on previous iteration)
16Select seq ref\|NP_001180121.1\|	tumor necrosis factor receptor superfamily member 13C [Bos taurus]	112	112	97%	5e-28	43%	NP_001180121.1(scored below threshold on previous iteration)
17Select seq ref\|XP_004380101.1\|	PREDICTED: uncharacterized protein LOC101359471 [Trichechus manatus latirostris]	115	115	97%	6e-28	42%	XP_004380101.1(scored below threshold on previous iteration)
18Select seq ref\|XP_003783197.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C [Otolemur garnettii]	111	111	98%	1e-27	42%	XP_003783197.1(scored below threshold on previous iteration)
19Select seq ref\|XP_005606750.1\|	PREDICTED: LOW QUALITY PROTEIN: tumor necrosis factor receptor superfamily member 13C [Equus caballus]	111	111	98%	2e-27	37%	XP_005606750.1(scored below threshold on previous iteration)
20Select seq ref\|XP_006150780.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C [Tupaia chinensis]	111	111	91%	2e-27	37%	XP_006150780.1(scored below threshold on previous iteration)
21Select seq ref\|XP_006866978.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C [Chrysochloris asiatica]	109	109	98%	5e-27	38%	XP_006866978.1(scored below threshold on previous iteration)
22Select seq ref\|XP_007974122.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C isoform X2 [Chlorocebus sabaeus]	109	109	98%	8e-27	39%	XP_007974122.1(scored below threshold on previous iteration)
23Select seq ref\|XP_002763949.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C [Callithrix jacchus]	109	109	98%	1e-26	48%	XP_002763949.1(scored below threshold on previous iteration)
24Select seq ref\|XP_005379434.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C isoform X2 [Chinchilla lanigera]	110	110	99%	1e-26	42%	XP_005379434.1(scored below threshold on previous iteration)
25Select seq ref\|XP_005515007.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C [Columba livia]	109	109	97%	2e-26	24%	XP_005515007.1(scored below threshold on previous iteration)
26Select seq ref\|XP_005379433.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C isoform X1 [Chinchilla lanigera]	109	109	99%	2e-26	42%	XP_005379433.1(scored below threshold on previous iteration)
27Select seq ref\|XP_005567183.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C isoform X1 [Macaca fascicularis]	108	108	98%	3e-26	36%	XP_005567183.1(scored below threshold on previous iteration)
28Select seq ref\|XP_004650677.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C [Jaculus jaculus]	107	107	95%	4e-26	41%	XP_004650677.1(scored below threshold on previous iteration)
29Select seq ref\|NP_001232906.1\|	tumor necrosis factor receptor superfamily member 13C [Equus caballus]	107	107	98%	5e-26	42%	NP_001232906.1(scored below threshold on previous iteration)
30Select seq ref\|XP_003419857.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C-like [Loxodonta africana]	107	107	98%	7e-26	39%	XP_003419857.1(scored below threshold on previous iteration)
31Select seq ref\|XP_004813971.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C [Mustela putorius furo]	106	106	100%	7e-26	38%	XP_004813971.1(scored below threshold on previous iteration)
32Select seq ref\|XP_005322468.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C [Ictidomys tridecemlineatus]	107	107	98%	7e-26	37%	XP_005322468.1(scored below threshold on previous iteration)
33Select seq ref\|XP_005907254.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C [Bos mutus]	105	105	97%	9e-26	39%	XP_005907254.1(scored below threshold on previous iteration)
34Select seq ref\|XP_007939975.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C [Orycteropus afer afer]	106	106	98%	9e-26	42%	XP_007939975.1(scored below threshold on previous iteration)
35Select seq ref\|XP_004397517.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C [Odobenus rosmarus divergens]	106	106	100%	1e-25	45%	XP_004397517.1(scored below threshold on previous iteration)
36Select seq ref\|XP_002721429.1\|	PREDICTED: BAFF receptor-like [Oryctolagus cuniculus]	106	106	90%	1e-25	47%	XP_002721429.1(scored below threshold on previous iteration)
37Select seq ref\|XP_007079578.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C [Panthera tigris altaica]	104	104	100%	2e-25	38%	XP_007079578.1(scored below threshold on previous iteration)
38Select seq ref\|NP_443177.1\|	tumor necrosis factor receptor superfamily member 13C [Homo sapiens]	105	105	98%	4e-25	39%	NP_443177.1(scored below threshold on previous iteration)
39Select seq ref\|XP_006069000.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C [Bubalus bubalis]	103	103	97%	6e-25	38%	XP_006069000.1(scored below threshold on previous iteration)
40Select seq ref\|XP_005237495.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C [Falco peregrinus] >ref\|XP_005441399.1\| PREDICTED: tumor necrosis factor receptor superfamily member 13C [Falco cherrug]	105	105	82%	7e-25	28%	XP_005237495.1(scored below threshold on previous iteration)
41Select seq ref\|XP_001101623.2\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C-like [Macaca mulatta] >ref\|XP_005567184.1\| PREDICTED: tumor necrosis factor receptor superfamily member 13C isoform X2 [Macaca fascicularis]	103	103	98%	2e-24	38%	XP_001101623.2(scored below threshold on previous iteration)
42Select seq ref\|XP_004589522.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C [Ochotona princeps]	103	103	98%	2e-24	46%	XP_004589522.1(scored below threshold on previous iteration)
43Select seq ref\|XP_004063616.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C [Gorilla gorilla gorilla]	103	103	98%	2e-24	33%	XP_004063616.1(scored below threshold on previous iteration)
44Select seq ref\|XP_006890241.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C [Elephantulus edwardii]	102	102	93%	3e-24	41%	XP_006890241.1(scored below threshold on previous iteration)
45Select seq ref\|XP_004315226.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C [Tursiops truncatus]	102	102	91%	4e-24	41%	XP_004315226.1(scored below threshold on previous iteration)
46Select seq ref\|XP_005488807.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C [Zonotrichia albicollis]	102	102	97%	5e-24	23%	XP_005488807.1(scored below threshold on previous iteration)
47Select seq ref\|XP_006207250.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C [Vicugna pacos]	98.7	98.7	90%	4e-23	36%	XP_006207250.1(scored below threshold on previous iteration)
48Select seq ref\|XP_005040004.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C [Ficedula albicollis]	100	100	96%	4e-23	23%	XP_005040004.1(scored below threshold on previous iteration)
49Select seq ref\|NP_001032917.1\|	tumor necrosis factor receptor superfamily, member 13C [Gallus gallus]	99.9	99.9	95%	6e-23	22%	NP_001032917.1(scored below threshold on previous iteration)
50Select seq ref\|XP_006259961.1\|	PREDICTED: uncharacterized protein LOC102561983 [Alligator mississippiensis]	99.9	99.9	89%	6e-23	25%	XP_006259961.1(scored below threshold on previous iteration)
51Select seq ref\|XP_002192624.2\|	PREDICTED: uncharacterized protein LOC100226292 [Taeniopygia guttata]	99.9	99.9	97%	7e-23	23%	XP_002192624.2(scored below threshold on previous iteration)
52Select seq ref\|XP_003264675.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C [Nomascus leucogenys]	99.5	99.5	98%	9e-23	34%	XP_003264675.1(scored below threshold on previous iteration)
53Select seq ref\|XP_006027737.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C [Alligator sinensis]	99.1	99.1	89%	1e-22	25%	XP_006027737.1(scored below threshold on previous iteration)
54Select seq ref\|XP_007523491.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C [Erinaceus europaeus]	98.0	98.0	91%	2e-22	40%	XP_007523491.1(scored below threshold on previous iteration)
55Select seq ref\|XP_007454156.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C [Lipotes vexillifer]	98.0	98.0	90%	2e-22	41%	XP_007454156.1(scored below threshold on previous iteration)
56Select seq ref\|XP_007189364.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C [Balaenoptera acutorostrata scammoni]	96.8	96.8	90%	4e-22	44%	XP_007189364.1(scored below threshold on previous iteration)
57Select seq ref\|XP_004279694.1\|	PREDICTED: uncharacterized protein LOC101276202 [Orcinus orca]	99.5	99.5	97%	4e-22	40%	XP_004279694.1(scored below threshold on previous iteration)
58Select seq ref\|XP_006917430.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C [Pteropus alecto]	96.8	96.8	98%	5e-22	39%	XP_006917430.1(scored below threshold on previous iteration)
59Select seq ref\|XP_849061.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C isoform 2 [Canis lupus familiaris]	94.9	94.9	89%	4e-21	44%	XP_849061.1(scored below threshold on previous iteration)
60Select seq ref\|XP_003202364.1\|	PREDICTED: hypothetical protein LOC100547247 [Meleagris gallopavo]	94.5	94.5	95%	8e-21	21%	XP_003202364.1(scored below threshold on previous iteration)
61Select seq ref\|XP_004676483.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C [Condylura cristata]	92.6	92.6	96%	3e-20	44%	XP_004676483.1(scored below threshold on previous iteration)
62Select seq ref\|XP_007099994.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C [Physeter catodon]	92.6	92.6	90%	3e-20	37%	XP_007099994.1(scored below threshold on previous iteration)
63Select seq ref\|XP_004771280.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C isoform X3 [Mustela putorius furo]	91.4	91.4	100%	6e-20	43%	XP_004771280.1(scored below threshold on previous iteration)
64Select seq ref\|XP_004771279.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C isoform X2 [Mustela putorius furo]	91.0	91.0	100%	9e-20	43%	XP_004771279.1(scored below threshold on previous iteration)
65Select seq ref\|XP_005527798.1\|	PREDICTED: uncharacterized protein LOC102103626 [Pseudopodoces humilis]	91.0	91.0	97%	1e-19	23%	XP_005527798.1(scored below threshold on previous iteration)
66Select seq ref\|XP_003221050.1\|	PREDICTED: hypothetical protein LOC100552660 [Anolis carolinensis]	90.6	90.6	92%	2e-19	21%	XP_003221050.1(scored below threshold on previous iteration)
67Select seq ref\|XP_004771278.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C isoform X1 [Mustela putorius furo]	90.3	90.3	100%	2e-19	43%	XP_004771278.1(scored below threshold on previous iteration)
68Select seq ref\|XP_003814704.1\|	PREDICTED: uncharacterized protein LOC100968929 [Pan paniscus]	87.6	87.6	71%	1e-17	35%	XP_003814704.1(scored below threshold on previous iteration)
69Select seq ref\|XP_005422009.1\|	PREDICTED: protein shisa-6 homolog [Geospiza fortis]	86.4	86.4	97%	3e-17	23%	XP_005422009.1(scored below threshold on previous iteration)
70Select seq ref\|XP_001154286.1\|	PREDICTED: uncharacterized protein LOC746611 [Pan troglodytes]	85.6	85.6	76%	4e-17	34%	XP_001154286.1(scored below threshold on previous iteration)
71Select seq ref\|XP_006120590.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C [Pelodiscus sinensis]	79.5	79.5	85%	2e-15	26%	XP_006120590.1(scored below threshold on previous iteration)
72Select seq ref\|XP_006174789.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C [Camelus ferus]	75.6	118	69%	8e-15	47%	XP_006174789.1(scored below threshold on previous iteration)
73Select seq ref\|XP_002926730.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C-like [Ailuropoda melanoleuca]	74.1	74.1	100%	3e-14	35%	XP_002926730.1(scored below threshold on previous iteration)
74Select seq ref\|XP_005681248.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C [Capra hircus]	74.5	74.5	74%	9e-14	34%	XP_005681248.1(scored below threshold on previous iteration)
75Select seq ref\|XP_006740425.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C [Leptonychotes weddellii]	72.1	72.1	39%	1e-13	48%	XP_006740425.1(scored below threshold on previous iteration)
76Select seq ref\|XP_005984806.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C [Pantholops hodgsonii]	71.8	125	85%	2e-13	47%	XP_005984806.1(scored below threshold on previous iteration)
77Select seq ref\|XP_004700749.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C [Echinops telfairi]	68.7	123	97%	3e-12	39%	XP_004700749.1(scored below threshold on previous iteration)
78Select seq ref\|XP_004023694.1\|	PREDICTED: LOW QUALITY PROTEIN: tumor necrosis factor receptor superfamily member 13C-like [Ovis aries]	70.6	70.6	83%	3e-12	34%	XP_004023694.1(scored below threshold on previous iteration)
79Select seq ref\|XP_003933016.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C [Saimiri boliviensis boliviensis]	68.7	68.7	68%	4e-12	36%	XP_003933016.1(scored below threshold on previous iteration)
80Select seq ref\|XP_002688013.2\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C [Bos taurus]	68.3	68.3	72%	6e-12	41%	XP_002688013.2(scored below threshold on previous iteration)
81Select seq ref\|XP_003905674.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C-like [Papio anubis]	65.2	65.2	42%	1e-10	51%	XP_003905674.1(scored below threshold on previous iteration)
82Select seq ref\|XP_003905673.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C-like [Papio anubis]	55.6	55.6	48%	9e-08	34%	XP_003905673.1(scored below threshold on previous iteration)
83Select seq ref\|XP_004484190.1\|	PREDICTED: tumor necrosis factor receptor superfamily member 13C [Dasypus novemcinctus]	55.2	106	72%	2e-07	28%	XP_004484190.1(scored below threshold on previous iteration)

Sequences with E-value WORSE than threshold

Select:All None Selected:0 Yellow: sequences scoring below threshold on previous iteration

Sequences with E-value WORSE than threshold
Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession	Select for PSI blast	Used to build PSSM

Run PSI-Blast iteration 5 with max

Alignments

Download GenPept Graphics Next Previous Descriptions

PREDICTED: tumor necrosis factor receptor superfamily member 13C isoform X1 [Mus musculus]

Sequence ID: ref|XP_006521491.1|Length: 164Number of Matches: 1

See 2 more title(s)

Related Information

Gene-associated gene details

Identical Proteins-Proteins identical to the subject

Range 1: 1 to 164GenPept Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Method	Identities	Positives	Gaps	Frame
156 bits(393)	5e-45()	Composition-based stats.	164/164(100%)	164/164(100%)	0/164(0%)

Query  1    MGARRLRVRSQRSRDSSVPTQCNQTECFDPLVRNCVSCELFHTPDTGHTSSLEPGTALQP  60
            MGARRLRVRSQRSRDSSVPTQCNQTECFDPLVRNCVSCELFHTPDTGHTSSLEPGTALQP
Sbjct  1    MGARRLRVRSQRSRDSSVPTQCNQTECFDPLVRNCVSCELFHTPDTGHTSSLEPGTALQP  60

Query  61   QEGSALRPDVALLVGAPALLGLILALTLVGLVSLVSWRWRQQLRTASPDTSEGVQQETPH  120
            QEGSALRPDVALLVGAPALLGLILALTLVGLVSLVSWRWRQQLRTASPDTSEGVQQETPH
Sbjct  61   QEGSALRPDVALLVGAPALLGLILALTLVGLVSLVSWRWRQQLRTASPDTSEGVQQETPH  120

Query  121  ASAPTWPPLKEDADSALPRHSVPVPATELGSTELVTTKTAGPEQ  164
            ASAPTWPPLKEDADSALPRHSVPVPATELGSTELVTTKTAGPEQ
Sbjct  121  ASAPTWPPLKEDADSALPRHSVPVPATELGSTELVTTKTAGPEQ  164

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tumor necrosis factor receptor superfamily member 13C [Mus musculus]

Sequence ID: ref|NP_082351.1|Length: 175Number of Matches: 1

Related Information

Gene-associated gene details

UniGene-clustered expressed sequence tags

Map Viewer-aligned genomic context

Range 1: 1 to 175GenPept Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Method	Identities	Positives	Gaps	Frame
151 bits(381)	5e-43()	Composition-based stats.	162/175(93%)	162/175(92%)	11/175(6%)

Query  1    MGARRLRVRSQRSRDSSVPTQCNQTECFDPLVRNCVSCELFHTPDTGHTSSLEPGTALQP  60
            MGARRLRVRSQRSRDSSVPTQCNQTECFDPLVRNCVSCELFHTPDTGHTSSLEPGTALQP
Sbjct  1    MGARRLRVRSQRSRDSSVPTQCNQTECFDPLVRNCVSCELFHTPDTGHTSSLEPGTALQP  60

Query  61   QEGSALRPDVALLVGAPALLGLILALTLVGLVSLVSWRWRQQLRTASPDTSEGV------  114
            QEGSALRPDVALLVGAPALLGLILALTLVGLVSLVSWRWRQQLRTASPDTSEGV      
Sbjct  61   QEGSALRPDVALLVGAPALLGLILALTLVGLVSLVSWRWRQQLRTASPDTSEGVQQESLE  120

Query  115  -----QQETPHASAPTWPPLKEDADSALPRHSVPVPATELGSTELVTTKTAGPEQ  164
                   ETPHASAPTWPPLKEDADSALPRHSVPVPATELGSTELVTTKTAGPEQ
Sbjct  121  NVFVPSSETPHASAPTWPPLKEDADSALPRHSVPVPATELGSTELVTTKTAGPEQ  175

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PREDICTED: tumor necrosis factor receptor superfamily member 13C-like [Rattus norvegicus]

Sequence ID: ref|XP_576316.2|Length: 175Number of Matches: 1

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Related Information

Gene-associated gene details

Map Viewer-aligned genomic context

Identical Proteins-Proteins identical to the subject

Range 1: 20 to 175GenPept Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Method	Identities	Positives	Gaps	Frame
147 bits(370)	2e-41()	Composition-based stats.	125/156(80%)	130/156(83%)	11/156(7%)

Query  20   TQCNQTECFDPLVRNCVSCELFHTPDTGHTSSLEPGTALQPQEGSALRPDVALLVGAPAL  79
            TQCNQTECFDPLVRNCVSCELF+TP+T H SSLEPGTALQPQEGS LRPDVALL GAPAL
Sbjct  20   TQCNQTECFDPLVRNCVSCELFYTPETRHASSLEPGTALQPQEGSGLRPDVALLFGAPAL  79

Query  80   LGLILALTLVGLVSLVSWRWRQQLRTASPDTSEGV-----------QQETPHASAPTWPP  128
            LGL+LALTLVGLVSLV WRWRQQ RTAS DTSEGV             ET HASAP WPP
Sbjct  80   LGLVLALTLVGLVSLVGWRWRQQRRTASLDTSEGVQQESLENVFVPPSETLHASAPNWPP  139

Query  129  LKEDADSALPRHSVPVPATELGSTELVTTKTAGPEQ  164
             KEDAD+ L  HS+PVPATELGSTELVTTKTAGPEQ
Sbjct  140  FKEDADNILSCHSIPVPATELGSTELVTTKTAGPEQ  175

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PREDICTED: tumor necrosis factor receptor superfamily member 13C [Mesocricetus auratus]

Sequence ID: ref|XP_005067089.1|Length: 179Number of Matches: 1

Related Information

Gene-associated gene details

Map Viewer-aligned genomic context

Range 1: 1 to 179GenPept Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Method	Identities	Positives	Gaps	Frame
144 bits(363)	3e-40()	Composition-based stats.	100/179(56%)	117/179(65%)	15/179(8%)

Query  1    MGARRLRVRSQRSRDSSVPTQCNQTECFDPLVRNCVSCELFHTPDTGHTSSLEPGTALQP  60
            MGAR+   RS+RSRDS +PT C QT CFDPLVR+CV+C L  TPD  H SS  PGTALQP
Sbjct  1    MGARKREARSRRSRDSPMPTPCVQTLCFDPLVRHCVACNLLRTPDPLHASSQAPGTALQP  60

Query  61   QEGSALRPDVALLVGAPALLGL----ILALTLVGLVSLVSWRWRQQLRTASPDTSEGVQQ  116
            QE           +  P LL      +  +  + LV+LV+WRWRQQ R ASP T +GVQ+
Sbjct  61   QESVGTGAGPDARLPLPGLLFGAPALLGLMLALALVALVTWRWRQQRRMASPGTPDGVQE  120

Query  117  ETPH-----------ASAPTWPPLKEDADSALPRHSVPVPATELGSTELVTTKTAGPEQ  164
            E+             ASAP WP  KEDAD+ LP HS+PVPATELGSTELVTTKTAGPE+
Sbjct  121  ESLDNVFVSSSETLHASAPIWPTPKEDADTTLPGHSIPVPATELGSTELVTTKTAGPEE  179

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PREDICTED: tumor necrosis factor receptor superfamily member 13C [Cricetulus griseus]

Sequence ID: ref|XP_003512388.1|Length: 179Number of Matches: 1

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Related Information

Gene-associated gene details

Map Viewer-aligned genomic context

Identical Proteins-Proteins identical to the subject

Range 1: 1 to 179GenPept Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Method	Identities	Positives	Gaps	Frame
143 bits(359)	1e-39()	Composition-based stats.	97/179(54%)	115/179(64%)	15/179(8%)

Query  1    MGARRLRVRSQRSRDSSVPTQCNQTECFDPLVRNCVSCELFHTPDTGHTSSLEPGTALQP  60
            MGAR+   +S+RSRDS + T C QT CFDPLVR+CV+C L  TPD  H SS  PGTALQP
Sbjct  1    MGARKREAKSRRSRDSPMTTPCVQTLCFDPLVRHCVACNLLRTPDPLHASSHAPGTALQP  60

Query  61   QEGSALRPDVALLVGAPALLGL----ILALTLVGLVSLVSWRWRQQLRTASPDTSEGVQQ  116
            QE     P     +  P LL      +  +  + LV+LV+WRW QQ R ASP T +GVQ+
Sbjct  61   QESVGTGPGPDTTLPLPGLLFGAPALLGLMLALALVALVTWRWWQQRRMASPGTPDGVQE  120

Query  117  ETPH-----------ASAPTWPPLKEDADSALPRHSVPVPATELGSTELVTTKTAGPEQ  164
            E+             ASAP WP  KED D+ LP HS+PVPATELGSTELVTTKTAGPE+
Sbjct  121  ESLDNVFVSSSETLHASAPIWPTPKEDVDTTLPGHSIPVPATELGSTELVTTKTAGPEE  179

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PREDICTED: tumor necrosis factor receptor superfamily member 13C [Heterocephalus glaber]

Sequence ID: ref|XP_004897796.1|Length: 181Number of Matches: 1

Related Information

Gene-associated gene details

Map Viewer-aligned genomic context

Range 1: 4 to 180GenPept Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Method	Identities	Positives	Gaps	Frame
129 bits(324)	2e-34()	Composition-based stats.	81/177(46%)	97/177(54%)	13/177(7%)

Query  1    MGARRLRVRSQRSRDSSVPTQCNQTECFDPLVRNCVSCELFHTPDTG--HTSSLEPGTAL  58
            +    LR RS +     VPT+C Q ECFD LVR+CV+C L  T +      SS  PGT L
Sbjct  4    LSTMGLRGRSLKGMSGPVPTRCIQAECFDHLVRHCVACSLLRTAEPRAVGASSQAPGTVL  63

Query  59   QPQEGSALR----PDVALLVGAPALLGLILALTLVGLVSLVSWRWRQQL-------RTAS  107
            QPQE   +     P   LL GAP +LGL LAL LV +  +     +++        +   
Sbjct  64   QPQESVGVGATGLPLPGLLFGAPVVLGLALALALVLVALVSWRWRQRRTLEAPEGSQEEP  123

Query  108  PDTSEGVQQETPHASAPTWPPLKEDADSALPRHSVPVPATELGSTELVTTKTAGPEQ  164
             D        TP ASAP WP  +E   +  P HSVPVPATELGSTELVTTKTAGPEQ
Sbjct  124  LDNVYVPSPGTPDASAPVWPEPREHPATTPPSHSVPVPATELGSTELVTTKTAGPEQ  180

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PREDICTED: tumor necrosis factor receptor superfamily member 13C [Peromyscus maniculatus bairdii]

Sequence ID: ref|XP_006980269.1|Length: 179Number of Matches: 1

Related Information

Gene-associated gene details

Range 1: 15 to 179GenPept Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Method	Identities	Positives	Gaps	Frame
127 bits(319)	9e-34()	Composition-based stats.	93/165(56%)	104/165(63%)	15/165(9%)

Query  15   DSSVPTQCNQTECFDPLVRNCVSCELFHTPDTGHTSSLEPGTALQPQEGSALRPDVALLV  74
            DS VPT C QT CFDPLVR+CV+CEL  TPD        PGTALQPQE   + P     +
Sbjct  15   DSPVPTPCVQTLCFDPLVRHCVACELLRTPDPPRHGKQAPGTALQPQESVGMGPGTDATL  74

Query  75   GAPALLGLIL----ALTLVGLVSLVSWRWRQQLRTASPDTSEGV-----------QQETP  119
              P LL         + LV LV+LV+WRW QQ R ASPD  +GV             ET 
Sbjct  75   PLPGLLFGAPALLGLVLLVLLVALVTWRWWQQRRMASPDIPDGVQEESLDNVYVSSPETL  134

Query  120  HASAPTWPPLKEDADSALPRHSVPVPATELGSTELVTTKTAGPEQ  164
            HASAP WP  KEDAD+ LP HS+PVPATELGSTELVTTKTAGPE+
Sbjct  135  HASAPVWPTPKEDADTTLPGHSIPVPATELGSTELVTTKTAGPEE  179

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PREDICTED: tumor necrosis factor receptor superfamily member 13C [Octodon degus]

Sequence ID: ref|XP_004642638.1|Length: 183Number of Matches: 1

Related Information

Gene-associated gene details

Map Viewer-aligned genomic context

Range 1: 1 to 182GenPept Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Method	Identities	Positives	Gaps	Frame
125 bits(313)	8e-33()	Composition-based stats.	75/183(41%)	91/183(49%)	23/183(12%)

Query  4    RRLRVRSQRSRDSSVPTQCNQTECFDPLVRNCVSCELFHTPDTG--HTSSLEPGTALQPQ  61
                 R  +  +   PT C Q +CFD LVR+CV C+L  TP+      SS  PGTALQPQ
Sbjct  1    MGQGARGLQGMNGPGPTHCVQAKCFDQLVRHCVDCKLLRTPEPRAAGASSQAPGTALQPQ  60

Query  62   EGSALRPDVALLVGAPALLGLILALTLVGLVSLV------SWRWRQQLRTA---------  106
            E          ++  P LL  +  L  + L+  +      SW+WRQ+             
Sbjct  61   ESVGAGT-PQAVLPLPGLLFGVPVLLGLALLLALVLVALVSWKWRQRRTLEALERSQDGE  119

Query  107  -----SPDTSEGVQQETPHASAPTWPPLKEDADSALPRHSVPVPATELGSTELVTTKTAG  161
                  PD        TP ASAP WP  +ED  +    HSVPVPATELGSTELVTTKTAG
Sbjct  120  SHVGKPPDNIYIPSSGTPDASAPVWPAPREDPAATPSSHSVPVPATELGSTELVTTKTAG  179

Query  162  PEQ  164
            PEQ
Sbjct  180  PEQ  182

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PREDICTED: tumor necrosis factor receptor superfamily member 13C [Felis catus]

Sequence ID: ref|XP_006934224.1|Length: 165Number of Matches: 1

Related Information

Gene-associated gene details

Range 1: 1 to 164GenPept Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Method	Identities	Positives	Gaps	Frame
124 bits(311)	1e-32()	Composition-based stats.	66/164(40%)	80/164(48%)	0/164(0%)

Query  1    MGARRLRVRSQRSRDSSVPTQCNQTECFDPLVRNCVSCELFHTPDTGHTSSLEPGTALQP  60
            MG+RR   RS R R+ + PT+C   +CFDPLVR CV C L  TP+ G   S     A Q 
Sbjct  1    MGSRRRGARSLRGREGAAPTKCVVDKCFDPLVRKCVDCRLLRTPEPGPGKSRPALPAGQR  60

Query  61   QEGSALRPDVALLVGAPALLGLILALTLVGLVSLVSWRWRQQLRTASPDTSEGVQQETPH  120
                      A          L     + G  + +      +      D       +   
Sbjct  61   GSPGEGEEVPATAAPPLPEPQLPEQEGVGGYDATLILYSLPRPPPEPLDDVIIHPPKPLD  120

Query  121  ASAPTWPPLKEDADSALPRHSVPVPATELGSTELVTTKTAGPEQ  164
            A+AP WPP +ED  +  P HSVPVPATELGSTELVTTKTAGPEQ
Sbjct  121  ATAPVWPPPREDPANTPPAHSVPVPATELGSTELVTTKTAGPEQ  164

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PREDICTED: tumor necrosis factor receptor superfamily member 13C [Heterocephalus glaber]

Sequence ID: ref|XP_004845557.1|Length: 175Number of Matches: 1

Related Information

Gene-associated gene details

Map Viewer-aligned genomic context

Range 1: 1 to 174GenPept Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Method	Identities	Positives	Gaps	Frame
124 bits(310)	2e-32()	Composition-based stats.	80/174(46%)	95/174(54%)	13/174(7%)

Query  4    RRLRVRSQRSRDSSVPTQCNQTECFDPLVRNCVSCELFHTPDTG--HTSSLEPGTALQPQ  61
              L  RS +     VPT+C Q ECFD LVR+CV+C L  T +      SS  PGT LQPQ
Sbjct  1    MGLGGRSLKGMSGPVPTRCIQAECFDHLVRHCVACSLLRTAEPRAVGASSQAPGTVLQPQ  60

Query  62   EGSALR----PDVALLVGAPALLGLILALTLVGLVSLVSWRWRQQL-------RTASPDT  110
            E   +     P   LL GAP +LGL LAL LV +  +     +++        +    D 
Sbjct  61   ESVGVGATGLPLPGLLFGAPVVLGLALALALVLVALVSWRWRQRRTLEAPEGSQEEPLDN  120

Query  111  SEGVQQETPHASAPTWPPLKEDADSALPRHSVPVPATELGSTELVTTKTAGPEQ  164
                   TP ASAP WP  +E   +  P HSVPVPATELGSTELVTTKTAGPEQ
Sbjct  121  VYVPSPGTPDASAPVWPEPREHPATTPPSHSVPVPATELGSTELVTTKTAGPEQ  174

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PREDICTED: tumor necrosis factor receptor superfamily member 13C [Microtus ochrogaster]

Sequence ID: ref|XP_005354557.1|Length: 176Number of Matches: 1

Related Information

Gene-associated gene details

Map Viewer-aligned genomic context

Range 1: 1 to 176GenPept Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Method	Identities	Positives	Gaps	Frame
123 bits(308)	3e-32()	Composition-based stats.	95/179(53%)	110/179(61%)	18/179(10%)

Query  1    MGARRLRVRSQRSRDSSVPTQCNQTECFDPLVRNCVSCELFHTPDTGHTSSLEPGTALQP  60
            MGAR+   RS+RSRDS +PT C Q  CFDPLVR C+ C L  TPD        PGTALQP
Sbjct  1    MGARKRGTRSRRSRDSPMPTPCIQALCFDPLVRRCLECNLLRTPDPPRH---APGTALQP  57

Query  61   QEGSALRPDVALLVGAPALLGLILALTLVGLVSLVS----WRWRQQLRTASPDTSEGVQQ  116
            QE     P     +  P LL    AL  + LV ++     WRW +Q R ASPDT +GVQ+
Sbjct  58   QESVGTGPGPDATLPLPGLLFGAPALLGLVLVLVLVALVIWRWWRQRRMASPDTPDGVQE  117

Query  117  ETPH-----------ASAPTWPPLKEDADSALPRHSVPVPATELGSTELVTTKTAGPEQ  164
            E+             ASAP WP  KEDAD+ LP HS+PVPATELGSTELVTTKTAGPE+
Sbjct  118  ESLDNVFVSSSETPPASAPIWPTPKEDADATLPSHSIPVPATELGSTELVTTKTAGPEE  176

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PREDICTED: tumor necrosis factor receptor superfamily member 13C [Cavia porcellus]

Sequence ID: ref|XP_003470572.1|Length: 179Number of Matches: 1

Related Information

Gene-associated gene details

Map Viewer-aligned genomic context

Range 1: 1 to 178GenPept Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Method	Identities	Positives	Gaps	Frame
122 bits(307)	5e-32()	Composition-based stats.	77/179(43%)	92/179(51%)	19/179(10%)

Query  4    RRLRVRSQRSRDSSVPTQCNQTECFDPLVRNCVSCELFHTPDTG--HTSSLEPGTALQPQ  61
                 RS +      PT+C QTECFD LVR+CVSC L  TP+      SS  PGT LQPQ
Sbjct  1    MGPGSRSLKGMSGPAPTRCVQTECFDHLVRHCVSCRLLRTPEPRAAGASSQAPGTVLQPQ  60

Query  62   EGSALRPDVALLVGAPALLGLILALTLVGLVSLV------SWRWRQQL----------RT  105
            E          ++  P LL     L  + L+  +      SW+WRQ+             
Sbjct  61   ESVGAGT-PEAMLPMPGLLFGAPVLLGLALLLALVLVALVSWKWRQRRTQEALEKSQDAP  119

Query  106  ASPDTSEGVQQETPHASAPTWPPLKEDADSALPRHSVPVPATELGSTELVTTKTAGPEQ  164
               D+   +   TP ASAP WP  +ED  +    HSVPVPATELGSTELVTTKTAGPEQ
Sbjct  120  EPLDSVYILSSGTPDASAPDWPTPREDPATTPSSHSVPVPATELGSTELVTTKTAGPEQ  178

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PREDICTED: tumor necrosis factor receptor superfamily member 13C [Ceratotherium simum simum]

Sequence ID: ref|XP_004437976.1|Length: 184Number of Matches: 1

Related Information

Gene-associated gene details

Map Viewer-aligned genomic context

Range 1: 1 to 183GenPept Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Method	Identities	Positives	Gaps	Frame
122 bits(305)	1e-31()	Composition-based stats.	81/183(44%)	93/183(50%)	22/183(12%)

Query  4    RRLRVRSQRSRDSSVPTQCNQTECFDPLVRNCVSCELFHTPDTGHT--SSLEPGTALQPQ  61
             R   RS + RD S PTQC Q ECFDPLVRNCV+C L  TP+      SSL PGTALQP+
Sbjct  1    MRRGARSLKGRDGSAPTQCVQAECFDPLVRNCVACRLLRTPEPRPAAGSSLAPGTALQPE  60

Query  62   EGSALR-PDVALLVGAPALLGLILALTL-------------------VGLVSLVSWRWRQ  101
            E       +    +  PALL    A                      +G V+        
Sbjct  61   ESVGAGVAEAEATLPLPALLFGAPAGLGLALALVLVGLVSWRWRRRRLGGVAAPEAPDGD  120

Query  102  QLRTASPDTSEGVQQETPHASAPTWPPLKEDADSALPRHSVPVPATELGSTELVTTKTAG  161
            Q   ++ D    V      A  P WPP +ED D+  P HSVPVPATELGSTELVTTKTAG
Sbjct  121  QDGESALDNVIIVSPGLLDAKTPVWPPPREDPDATPPAHSVPVPATELGSTELVTTKTAG  180

Query  162  PEQ  164
            PEQ
Sbjct  181  PEQ  183

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PREDICTED: uncharacterized protein LOC100456696 [Pongo abelii]

Sequence ID: ref|XP_002831258.2|Length: 399Number of Matches: 1

Related Information

Gene-associated gene details

Map Viewer-aligned genomic context

Range 1: 232 to 398GenPept Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Method	Identities	Positives	Gaps	Frame
120 bits(301)	2e-29()	Composition-based stats.	66/168(39%)	74/168(44%)	24/168(14%)

Query  20   TQCNQTECFDPLVRNCVSCELFHTPDTGHT--SSLEPGTALQPQEGSALRPDVALLVGAP  77
            T C   ECFD LVR+CV+C L  TP       SS  P TALQPQE           +  P
Sbjct  232  TPCIPAECFDLLVRHCVACGLLRTPRPKPAGASSPAPRTALQPQESVGAGAG-EAALPLP  290

Query  78   ALLGLILALTLVGL---------------------VSLVSWRWRQQLRTASPDTSEGVQQ  116
             LL    AL  + L                      S        +      D    +  
Sbjct  291  GLLFGAPALLGLALVLALVLVGLLSRRRRQRRLRGASSAEAPDGDKDAPEPLDKVIILSP  350

Query  117  ETPHASAPTWPPLKEDADSALPRHSVPVPATELGSTELVTTKTAGPEQ  164
                A+AP WPP   D  +  P HSVPVPATELGSTELVTTKTAGPEQ
Sbjct  351  GISDATAPAWPPPGADPGTTPPGHSVPVPATELGSTELVTTKTAGPEQ  398

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PREDICTED: tumor necrosis factor receptor superfamily member 13C isoform X1 [Chlorocebus sabaeus]

Sequence ID: ref|XP_007974121.1|Length: 185Number of Matches: 1

Related Information

Range 1: 1 to 184GenPept Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Method	Identities	Positives	Gaps	Frame
114 bits(285)	1e-28()	Composition-based stats.	68/184(37%)	80/184(43%)	23/184(12%)

Query  4    RRLRVRSQRSRDSSVPTQCNQTECFDPLVRNCVSCELFHTPDTGHTSSLEPG---TALQP  60
             +   RS R RD+  PT C   ECFD LVR+CV+C L  TP     +        TALQP
Sbjct  1    MKRGPRSLRGRDAPAPTPCVPAECFDLLVRHCVACGLLRTPRPKPAAPASSPAPRTALQP  60

Query  61   QEGSALRPDVALL--------------------VGAPALLGLILALTLVGLVSLVSWRWR  100
            QE        A L                    +    L         +   S       
Sbjct  61   QESVGAGAGEAALSLPGLLFGAPALLGLALVLALVLVGLASWRRRQRRLRGASFAEAPDG  120

Query  101  QQLRTASPDTSEGVQQETPHASAPTWPPLKEDADSALPRHSVPVPATELGSTELVTTKTA  160
             + +    D    +      A+APTWPP  ED  +  P HSVPVPATELGSTELVTTKTA
Sbjct  121  DKDKDEPLDKVIILSPGISDAAAPTWPPPGEDPGTTPPGHSVPVPATELGSTELVTTKTA  180

Query  161  GPEQ  164
            GPEQ
Sbjct  181  GPEQ  184

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tumor necrosis factor receptor superfamily member 13C [Bos taurus]

Sequence ID: ref|NP_001180121.1|Length: 185Number of Matches: 1

Related Information

Gene-associated gene details

UniGene-clustered expressed sequence tags

Map Viewer-aligned genomic context

Range 1: 1 to 183GenPept Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Method	Identities	Positives	Gaps	Frame
112 bits(281)	5e-28()	Composition-based stats.	78/183(43%)	89/183(48%)	23/183(12%)

Query  4    RRLRVRSQRSRDSSVPTQCNQTECFDPLVRNCVSCELFHTPDTG---HTSSLEPGTALQP  60
             +   RS R +D   PTQC QT+CFDPLVRNCV+C L  T         SSL PGTALQP
Sbjct  1    MQRGRRSLRGKDRPAPTQCLQTQCFDPLVRNCVACSLLRTTGPRLAGDRSSLAPGTALQP  60

Query  61   QEGSALRPDVALLVGAPALLGLILALTLVGLVS-------LVSWRWRQQLR---------  104
            QE +            P    L  A  L+GL         +   R R+Q           
Sbjct  61   QESAGPGTPAEAEAALPLPALLFGAPALLGLALALALLGLVTWKRRRRQPGAAVVPEAPE  120

Query  105  ----TASPDTSEGVQQETPHASAPTWPPLKEDADSALPRHSVPVPATELGSTELVTTKTA  160
                  S D    +   T  A+AP W    ED  +  P HSVPVPATELGSTELVTTKTA
Sbjct  121  AAEVPESLDVDTTLSPGTLDATAPIWLLPSEDPAATPPTHSVPVPATELGSTELVTTKTA  180

Query  161  GPE  163
            GPE
Sbjct  181  GPE  183

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PREDICTED: uncharacterized protein LOC101359471 [Trichechus manatus latirostris]

Sequence ID: ref|XP_004380101.1|Length: 350Number of Matches: 1

Related Information

Gene-associated gene details

Map Viewer-aligned genomic context

Range 1: 174 to 349GenPept Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Method	Identities	Positives	Gaps	Frame
115 bits(288)	6e-28()	Composition-based stats.	74/177(42%)	83/177(46%)	18/177(10%)

Query  5    RLRVRSQRSRDSSVPTQCNQTECFDPLVRNCVSCELFHT---PDTGHTSSLEPGTALQPQ  61
             L  RS   RD   PT C Q ECFD L+R CV+C LF T         SS   GTALQPQ
Sbjct  174  ELGARSMGGRDGPEPTLCGQAECFDRLLRLCVACNLFRTPEPSPAASASSPATGTALQPQ  233

Query  62   EGSALRPDVALLVGAPALLGLILALTLVGLV--------------SLVSWRWRQQLRTAS  107
            E           +  PALL    AL  + L                 V      + R  +
Sbjct  234  ESVGAGAFPQGALPLPALLFGAPALLALALALGLVGLLSWRRRRRGAVPLEAPDRDRNGT  293

Query  108  PDTSEGVQQETPHASAPTWPPLKEDADSALPRHSVPVPATELGSTELVTTKTAGPEQ  164
            PD    +      A+ P W P  ED  +  P HSVPVPATELGSTELVTTKTAGPEQ
Sbjct  294  PDNVIILSPGPIDATTPVWSPP-EDPATTPPGHSVPVPATELGSTELVTTKTAGPEQ  349

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PREDICTED: tumor necrosis factor receptor superfamily member 13C [Otolemur garnettii]

Sequence ID: ref|XP_003783197.1|Length: 183Number of Matches: 1

Related Information

Gene-associated gene details

Map Viewer-aligned genomic context

Range 1: 1 to 182GenPept Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Method	Identities	Positives	Gaps	Frame
111 bits(278)	1e-27()	Composition-based stats.	77/182(42%)	91/182(50%)	21/182(11%)

Query  4    RRLRVRSQRSRDSSVPTQCNQTECFDPLVRNCVSCELFHTPDTGHT--SSLEPGTALQPQ  61
             +   R  R RD  VPT C   +CFDPL+R CV CELF TP+      SS+ PGTALQPQ
Sbjct  1    MQRGARRPRGRDGPVPTSCYPAQCFDPLLRLCVDCELFRTPEARPAGLSSVVPGTALQPQ  60

Query  62   EGSALRPDVALL-----VGAPALLGLILALTLVGLVSLVSWRWRQQL-------------  103
            E        A L     +     L  +     + LV LVSWR+R+               
Sbjct  61   ESVGAGGSEAALPLSGLLLGAPALLGLALALALALVGLVSWRYRRLRGAASPQAPNEGQH  120

Query  104  RTASPDTSEGVQQETPHASAPTWPPLK-EDADSALPRHSVPVPATELGSTELVTTKTAGP  162
                 D    +   T   +AP WP  + ED  +  P HSVPVPATELGSTELVTTKTAG 
Sbjct  121  APEPLDNVIVLSPGTIDTTAPVWPLPREEDPGTTPPGHSVPVPATELGSTELVTTKTAGL  180

Query  163  EQ  164
            EQ
Sbjct  181  EQ  182

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PREDICTED: LOW QUALITY PROTEIN: tumor necrosis factor receptor superfamily member 13C [Equus caballus]

Sequence ID: ref|XP_005606750.1|Length: 179Number of Matches: 1

Related Information

Gene-associated gene details

Map Viewer-aligned genomic context

Range 1: 1 to 178GenPept Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Method	Identities	Positives	Gaps	Frame
111 bits(277)	2e-27()	Composition-based stats.	67/179(37%)	83/179(46%)	19/179(10%)

Query  4    RRLRVRSQRSRDSSVPTQCNQTECFDPLVRNCVSCELFHTPDTGHTSSLEPGTALQPQEG  63
             R   RS R RD + PTQC   +CFDPLVR CV+  L  TP+   ++SL PG+AL  QE 
Sbjct  1    MRRPARSLRGRDGTAPTQCAPAQCFDPLVRKCVAWHLLRTPEP-GSASLAPGSALHLQES  59

Query  64   SALRPDVA------------------LLVGAPALLGLILALTLVGLVSLVSWRWRQQLRT  105
                   A                  L +    +           L    +     + + 
Sbjct  60   VEPALTEAEVXLKSFPMLFGAPAGLGLALALVLVGLASWRWRRRRLRGAAALEAPDRDQD  119

Query  106  ASPDTSEGVQQETPHASAPTWPPLKEDADSALPRHSVPVPATELGSTELVTTKTAGPEQ  164
             + D    +         P WPP +ED D+  P HSVPVPATELGSTELVTTKTAGPEQ
Sbjct  120  EALDNVIVLTPGLLDVKTPVWPPPREDPDATPPAHSVPVPATELGSTELVTTKTAGPEQ  178

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PREDICTED: tumor necrosis factor receptor superfamily member 13C [Tupaia chinensis]

Sequence ID: ref|XP_006150780.1|Length: 186Number of Matches: 1

Related Information

Gene-associated gene details

Range 1: 12 to 185GenPept Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Method	Identities	Positives	Gaps	Frame
111 bits(277)	2e-27()	Composition-based stats.	64/174(37%)	78/174(44%)	24/174(13%)

Query  15   DSSVPTQCNQTECFDPLVRNCVSCELFHTPDTGHT--SSLEPGTALQPQEGSALRPDVAL  72
            +   PT C + ECFD L+R+CV+C+L  TP+      SSL P T LQPQE          
Sbjct  12   EGPAPTPCGRAECFDLLLRHCVACKLLRTPEPRPAGASSLVPRTVLQPQESVGAGAGPEG  71

Query  73   LVGAPALLGLILALTL----------------------VGLVSLVSWRWRQQLRTASPDT  110
            ++    LL     L                           V+        Q    S D 
Sbjct  72   VLPLHGLLFSAPLLLGLALVLALVGLVSWGWQQRRKQRCPGVASPEAPDTDQDAPESLDN  131

Query  111  SEGVQQETPHASAPTWPPLKEDADSALPRHSVPVPATELGSTELVTTKTAGPEQ  164
               +      A+AP WP   ED  +  P H+VPVPATELGSTELVTTKTAGPEQ
Sbjct  132  VIVLSPIALDATAPVWPSPAEDPGTTPPGHNVPVPATELGSTELVTTKTAGPEQ  185

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PREDICTED: tumor necrosis factor receptor superfamily member 13C [Chrysochloris asiatica]

Sequence ID: ref|XP_006866978.1|Length: 178Number of Matches: 1

Related Information

Gene-associated gene details

Range 1: 1 to 177GenPept Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Method	Identities	Positives	Gaps	Frame
109 bits(273)	5e-27()	Composition-based stats.	68/178(38%)	78/178(43%)	18/178(10%)

Query  4    RRLRVRSQRSRDSSVPTQCNQTECFDPLVRNCVSCELFHTPD---TGHTSSLEPGTALQP  60
                 RS   RD   P QC Q +CFD L+R CV+C LF TP+       SS   GTA QP
Sbjct  1    MARGARSMGGRDGPAPPQCGQGKCFDSLLRACVACRLFRTPEPSPAAGASSSASGTAPQP  60

Query  61   QEGSALRPDVALLVGAPALLGLILALTLVGL--------------VSLVSWRWRQQLRTA  106
            QE           +  P LL    AL  + L                             
Sbjct  61   QESVGADAGPQGALPLPGLLFGAPALLGLALALVLVCLVHWRRQRGGAAPPETPDCDGNE  120

Query  107  SPDTSEGVQQETPHASAPTWPPLKEDADSALPRHSVPVPATELGSTELVTTKTAGPEQ  164
              D    +   +   +AP WPP  ED  +  P HSVPVPATELGSTELVTTKT GPEQ
Sbjct  121  PLDNVIVLSPGSTDVTAPIWPPP-EDPATTPPGHSVPVPATELGSTELVTTKTMGPEQ  177

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PREDICTED: tumor necrosis factor receptor superfamily member 13C isoform X2 [Chlorocebus sabaeus]

Sequence ID: ref|XP_007974122.1|Length: 184Number of Matches: 1

Related Information

Range 1: 1 to 183GenPept Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Method	Identities	Positives	Gaps	Frame
109 bits(272)	8e-27()	Composition-based stats.	71/183(39%)	82/183(44%)	22/183(12%)

Query  4    RRLRVRSQRSRDSSVPTQCNQTECFDPLVRNCVSCELFHTPDTGHT--SSLEPGTALQPQ  61
             +   RS R RD+  PT C   ECFD LVR+CV+C L  TP       SS  P TALQPQ
Sbjct  1    MKRGPRSLRGRDAPAPTPCVPAECFDLLVRHCVACGLLRTPRPKPAPASSPAPRTALQPQ  60

Query  62   EGSALRPDVALL--------------------VGAPALLGLILALTLVGLVSLVSWRWRQ  101
            E        A L                    +    L         +   S        
Sbjct  61   ESVGAGAGEAALSLPGLLFGAPALLGLALVLALVLVGLASWRRRQRRLRGASFAEAPDGD  120

Query  102  QLRTASPDTSEGVQQETPHASAPTWPPLKEDADSALPRHSVPVPATELGSTELVTTKTAG  161
            + +    D    +      A+APTWPP  ED  +  P HSVPVPATELGSTELVTTKTAG
Sbjct  121  KDKDEPLDKVIILSPGISDAAAPTWPPPGEDPGTTPPGHSVPVPATELGSTELVTTKTAG  180

Query  162  PEQ  164
            PEQ
Sbjct  181  PEQ  183

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PREDICTED: tumor necrosis factor receptor superfamily member 13C [Callithrix jacchus]

Sequence ID: ref|XP_002763949.1|Length: 184Number of Matches: 1

Related Information

Gene-associated gene details

Map Viewer-aligned genomic context

Range 1: 1 to 184GenPept Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Method	Identities	Positives	Gaps	Frame
109 bits(271)	1e-26()	Composition-based stats.	88/184(48%)	98/184(53%)	23/184(12%)

Query  4    RRLRVRSQRSRDSSVPTQCNQTECFDPLVRNCVSCELFHT--PDTGHTSSLEPGTALQPQ  61
             R   RS R RD+ VPT C  TEC+D LVR CV C L     P T   SS  PGTALQPQ
Sbjct  1    MRRGPRSLRGRDAPVPTPCVPTECYDLLVRKCVDCRLLRRSPPKTAGASSPAPGTALQPQ  60

Query  62   EGSALR------PDVALLVGAPALLGLILALTLVGLVSLVSWRWRQQLR-----------  104
            E           P   LL GAPALLGL+L L LV +  +   R +Q+LR           
Sbjct  61   ESVGPGAGEVSLPVPRLLFGAPALLGLVLVLALVLVGLVSWRRRQQRLRGAASSEAPDDG  120

Query  105  ----TASPDTSEGVQQETPHASAPTWPPLKEDADSALPRHSVPVPATELGSTELVTTKTA  160
                    D    +   T  A+A  WPP  ED  +  P HSVPVPATELGSTELVTTKTA
Sbjct  121  DEAAPEPLDKLIILSPGTTDATASAWPPPGEDPGTTPPGHSVPVPATELGSTELVTTKTA  180

Query  161  GPEQ  164
            GPEQ
Sbjct  181  GPEQ  184

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PREDICTED: tumor necrosis factor receptor superfamily member 13C isoform X2 [Chinchilla lanigera]

Sequence ID: ref|XP_005379434.1|Length: 229Number of Matches: 1

Related Information

Gene-associated gene details

Map Viewer-aligned genomic context

Range 1: 51 to 228GenPept Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Method	Identities	Positives	Gaps	Frame
110 bits(274)	1e-26()	Composition-based stats.	75/178(42%)	89/178(50%)	15/178(8%)

Query  2    GARRLRVRSQRSRDSSVPTQCNQTECFDPLVRNCVSCELFHTPDTG--HTSSLEPGTALQ  59
                   RS +      PT+C Q ECFD LVR+CV+C L  TP+      SS  PGTALQ
Sbjct  51   STMGPGARSLKGVSGPGPTRCVQAECFDQLVRHCVACRLLRTPEPRAAGASSQAPGTALQ  110

Query  60   PQEGSALR------PDVALLVGAPALLGLILALTLVGLVSLVSWRWRQQL-------RTA  106
            PQE           P   LL G P LLGL L L LV +  +     +++        +  
Sbjct  111  PQESVGPGAPQPMLPLPGLLFGIPTLLGLALLLALVLVALVSWKWRQRRTLEALERNQEE  170

Query  107  SPDTSEGVQQETPHASAPTWPPLKEDADSALPRHSVPVPATELGSTELVTTKTAGPEQ  164
              +        TP  SAP  P   ED  +  P HSVPVPATELG T+LVTTKTAGPEQ
Sbjct  171  PLENVYIPSSGTPDTSAPVCPAPGEDPATTPPSHSVPVPATELGPTQLVTTKTAGPEQ  228

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PREDICTED: tumor necrosis factor receptor superfamily member 13C [Columba livia]

Sequence ID: ref|XP_005515007.1|Length: 215Number of Matches: 1

Related Information

Gene-associated gene details

Range 1: 4 to 206GenPept Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Method	Identities	Positives	Gaps	Frame
109 bits(272)	2e-26()	Composition-based stats.	49/206(24%)	78/206(37%)	49/206(23%)

Query  1    MGARRLRVRSQRSRDSSVPTQCNQTECFDPLVRNCVSCELFHTPDTGHTSSLEPGTALQP  60
            +G+R     S   +D+   + C  ++CFD L + CV C       T   +   P +A +P
Sbjct  4    LGSRSHSDMSSSGKDA---SSCLSSQCFDTLTKLCVECSDLLKDHTTEPTRAAPTSAQEP  60

Query  61   QEGSALRPDVALLVGAPALLGLILALTL-VGLVSLVSWRWRQQLRTASPDTSEGVQQETP  119
               S   P   L+ G PA++G IL L    G ++  + + R++ +    +T   V    P
Sbjct  61   TLPSVNLPSTLLIFGVPAMVGFILVLAALWGFLACKAGKQRRKRKAVDKETEANVDATGP  120

Query  120  ---------------------------------HASAPTWPPLKEDADSALP--------  138
                                             +A +   P  + D +  +         
Sbjct  121  LSSLGCQDTVMLEGDAALCLNLNGSLKMPGPPGNAGSKRRPCCQGDPNGDIVLLSAVYPR  180

Query  139  ----RHSVPVPATELGSTELVTTKTA  160
                 H  P+PATELG+T LVTTKT 
Sbjct  181  HEECNHGFPLPATELGATALVTTKTT  206

Basic Local Alignment Search Tool

ref|XP_006521491.1| (164 letters)

Graphic Summary

Distribution of 87 Blast Hits on the Query Sequence [?]

Descriptions

Sequences producing significant alignments with E-value BETTER than threshold

Sequences with E-value WORSE than threshold

Alignments

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