1.1 Филогенетические деревья

Расшифровка

Таблица 1. Выбранные виды
Название Мнемоника
Bacillus anthracis BACAN Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group
Clostridium botulinum CLOBA Bacteria; Terrabacteria group; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium
Enterococcus faecalis ENTFA Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Geobacillus kaustophilus GEOKA Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Bacillaceae; Geobacillus; Geobacillus thermoleovorans group
Listeria monocytogenes serovar 1/2a LISMO Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria; Listeria monocytogenes
Moorella thermoacetica MOOTA Bacteria; Terrabacteria group; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Moorella
Streptococcus pyogenes serotype M1 STRP1 Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus pyogenes

А. Дерево в стррочном формате newick

(((STRP1, ENTFA), (LISMO, (GEOKA, BACAN))), (MOOTA, CLOBA));

B. Изображение дерева

image

Нетривиальные ветви

  1. {GEOKA, BACAN} vs {STRP1, ENTFA, LISMO, MOOTA, CLOBA} - family Bacillaceae
  2. {STRP1, ENTFA} vs {GEOKA, BACAN, LISMO, MOOTA, CLOBA} - order Lactobacillales;
  3. {MOOTA, CLOBA} vs {GEOKA, BACAN, LISMO, STRP1, ENTFA} - class Clostridia vs class Bacilli
  4. {GEOKA, BACAN, LISMO} vs {STRP1, ENTFA, MOOTA, CLOBA} - order Bacilliales

Выравнивание белка RL2 image

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