Analysis of large genomic rearrangements

Task 1. Select 3 genome sequences of a same organism

Organism: Helicobacter pylori

NCBI Links:

First

Second

Third

Task 2. Calculate Identity and Coverage (homological regions)

First-Third: Identity 96%, Coverage 96%
First-Second: Identity 97%, Coverage 96%
Second-Third: Identity 97%, Coverage 95%
(Required data was received from blast2seq result pages)

Data received from NPG explorer (kodomo)
	all blocks	s-blocks	h-blocks	r-blocks	m-blocks
Amount	619	261	220	138	440
Min identity	0.7866	0.7866	0.8138	0.8305	0
Max identity	1	0.9787	1	1	1
Avg identity	0.9301	0.9349	0.9342	0.9145	0.6867
Med identity	0.9397	0.9492	0.9391	0.9044	0.8355
Coverage, %	89.24	79.41%	7.3%	2.52%	0.75%

Task 3. Analyse some large genomic rearrangements

Received images :
	Inversion example (480K-900K, axis x) Inversion example (100K-140K, axis x)
	Inversion example (480K-900K, axis x) Inversion + translocation example (20K-60K, axis x)
	Inversion + translocation example (20K-60K, axis x) Translocation example (280K-320K, axis x)

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