TBLASTN 2.2.15 [Oct-15-2006]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= RL7_ECOLI 50S ribosomal protein L7/L12                      
         (121 letters)

Database: all 
           884 sequences; 12,243,887 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE008894 AE006468 |AE008894| Salmonella typhimurium LT2, section...   145   2e-36
embl|AE006211|AE006211 Pasteurella multocida subsp. multocida st...   122   2e-29
AE012187 AE008922 |AE012187| Xanthomonas campestris pv. campestr...    97   1e-21

>AE008894 AE006468 |AE008894| Salmonella typhimurium LT2, section 198
            of 220 of the complete genome.
          Length = 23650

 Score =  145 bits (367), Expect = 2e-36
 Identities = 82/100 (82%), Positives = 83/100 (83%)
 Frame = +1

Query: 1    MSITKDQIIEAVAAMSVMDVVELISAMEEKFGVSXXXXXXXXXXXXXXXXXKTEFDVILK 60
            MSITKDQIIEAV+AMSVMDVVELISAMEEKFGVS                 KTEFDVILK
Sbjct: 2236 MSITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILK 2415

Query: 61   AAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVS 100
            AAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVS
Sbjct: 2416 AAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVS 2535


>embl|AE006211|AE006211 Pasteurella multocida subsp. multocida str.
            Pm70 section 178 of 204 of the complete genome.
          Length = 10859

 Score =  122 bits (307), Expect = 2e-29
 Identities = 68/101 (67%), Positives = 77/101 (76%), Gaps = 1/101 (0%)
 Frame = -1

Query: 1    MSITKDQIIEAVAAMSVMDVVELISAMEEKFGVSXXXXXXXXXXXXXXXXX-KTEFDVIL 59
            MS+T +QIIEA+A+ SV ++VELI+AMEEKFGVS                  KTEFDV+L
Sbjct: 4757 MSLTNEQIIEAIASKSVTEIVELIAAMEEKFGVSAAAAAVAVAAGPAEAAEEKTEFDVVL 4578

Query: 60   KAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVS 100
              AGANKVAVIKAVRGATGLGLKEAKDLVESAPA LKEG+S
Sbjct: 4577 AGAGANKVAVIKAVRGATGLGLKEAKDLVESAPAVLKEGIS 4455


>AE012187 AE008922 |AE012187| Xanthomonas campestris pv. campestris
            str. ATCC 33913,  section 95 of 460 of the complete
            genome.
          Length = 11375

 Score = 97.1 bits (240), Expect = 1e-21
 Identities = 56/101 (55%), Positives = 69/101 (68%), Gaps = 1/101 (0%)
 Frame = +2

Query: 1    MSITKDQIIEAVAAMSVMDVVELISAMEEKFGVSXXXXXXXXXXXXXXXXXK-TEFDVIL 59
            MS+T +QI++A+A  S+M+V+EL+ A+EEKFGVS                 + TEF V+L
Sbjct: 6524 MSLTNEQIVDAIAEKSLMEVMELVKAIEEKFGVSAAAPVAAAAAGPAAVVEEQTEFTVVL 6703

Query: 60   KAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVS 100
             + GANKVA IKAVRG TGLGLKEAKDL E A   LKEGVS
Sbjct: 6704 TSPGANKVAAIKAVRGVTGLGLKEAKDLTE-AGGILKEGVS 6823


  Database: all
    Posted date:  Oct 28, 2008 10:42 PM
  Number of letters in database: 12,243,887
  Number of sequences in database:  884
  
Lambda     K      H
   0.312    0.127    0.314 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 884
Number of Hits to DB: 579,016
Number of extensions: 3492
Number of successful extensions: 18
Number of sequences better than 1.0e-03: 3
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 3
Length of query: 121
Length of database: 4,081,295
Length adjustment: 81
Effective length of query: 40
Effective length of database: 4,009,691
Effective search space: 160387640
Effective search space used: 160387640
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 43 (21.2 bits)