RID: 5X2FVFFV013 Job Title:Protein Sequence Program: BLASTP Database: swissprot Non-redundant UniProtKB/SwissProt sequences Query #1: unnamed protein product Query ID: lcl|Query_87749 Length: 105 Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Structural polyprotein; Contains: RecName:... Japanese enc... NA 2555554 220 220 100% 2e-68 100.00 1198 P0DOK8.1 RecName: Full=Structural polyprotein; Contains: RecName:... Japanese enc... NA 11074 218 218 100% 1e-67 98.10 1198 P0DOH9.1 RecName: Full=Structural polyprotein; Contains: RecName:... Japanese enc... NA 11073 218 218 100% 1e-67 98.10 1198 P0DOH7.1 RecName: Full=Structural polyprotein; Contains: RecName:... Japanese enc... NA 11075 218 218 100% 2e-67 98.10 1198 P0DOH8.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Japanese enc... NA 2555554 212 212 100% 2e-65 100.00 3432 G3FEX6.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Japanese enc... NA 11074 209 209 100% 1e-64 98.10 3432 P19110.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Japanese enc... NA 11075 209 209 100% 1e-64 98.10 3432 P32886.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Japanese enc... NA 11073 209 209 100% 1e-64 98.10 3432 P27395.1 RecName: Full=Genome polyprotein; Contains: RecName:... Usutu virus NA 64286 179 179 99% 9e-54 80.77 3434 Q5WPU5.1 RecName: Full=Genome polyprotein; Contains: RecName:... Murray valle... NA 301478 166 166 91% 3e-49 80.21 3434 P05769.2 RecName: Full=Genome polyprotein; Contains: RecName:... West Nile vi... NA 1968826 159 159 100% 7e-47 67.62 3433 Q9Q6P4.2 RecName: Full=Genome polyprotein; Contains: RecName:... Kunjin virus... NA 11078 159 159 100% 7e-47 68.57 3433 P14335.1 RecName: Full=Genome polyprotein; Contains: RecName:... West Nile virus NA 11082 158 158 100% 2e-46 67.62 3430 P06935.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... St. Louis en... NA 11081 144 144 97% 2e-41 63.73 3412 P09732.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Kokobera virus NA 44024 106 106 97% 2e-28 52.43 3410 Q32ZD5.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Ilheus virus NA 59563 106 106 97% 3e-28 51.96 3424 Q32ZD7.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Rocio virus NA 64315 101 101 97% 1e-26 52.94 3425 Q32ZD4.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Bussuquara v... NA 64304 89.4 89.4 99% 2e-22 45.71 3429 Q32ZE0.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Zika virus Z... NA 2316109 83.2 83.2 97% 3e-20 43.14 3423 A0A142I5B9.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Zika virus Z... NA 2043570 83.2 83.2 97% 3e-20 43.14 3423 A0A024B7W1.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Zika virus NA 64320 83.2 83.2 89% 3e-20 45.74 3419 Q32ZE1.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 408693 74.7 74.7 93% 3e-17 42.42 3390 Q5UB51.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 408691 74.7 74.7 93% 3e-17 42.42 3390 Q6YMS3.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 408690 74.7 74.7 93% 3e-17 42.42 3390 Q99D35.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 408870 74.7 74.7 93% 3e-17 42.42 3390 P27915.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 408692 73.6 73.6 93% 8e-17 41.41 3390 Q6YMS4.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 413041 72.8 72.8 85% 2e-16 37.36 3391 P14337.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 31635 72.4 72.4 85% 2e-16 37.36 3391 P29991.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 31634 72.4 72.4 85% 2e-16 37.36 3391 P29990.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 11059 72.4 72.4 93% 2e-16 38.38 3392 P17763.2 RecName: Full=Genome polyprotein; Contains: RecName:... Dengue virus... NA 408685 72.0 72.0 93% 3e-16 38.38 3392 P27909.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 11065 71.6 71.6 85% 4e-16 36.26 3391 P14340.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 408694 71.6 71.6 85% 4e-16 36.26 3391 Q9WDA6.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 11066 71.6 71.6 85% 4e-16 36.26 3388 P12823.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 11064 69.7 69.7 85% 2e-15 35.16 3391 P07564.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 33741 68.9 68.9 83% 3e-15 38.20 3391 P33478.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 11058 65.9 65.9 91% 3e-14 39.18 791 P27913.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Japanese enc... NA 11076 65.5 65.5 29% 5e-14 96.77 1440 P14403.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 31636 61.6 61.6 85% 1e-12 30.77 1127 P30026.1 Alignments: >RecName: Full=Structural polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1'; Short=NS1' [Japanese encephalitis virus strain M28] Sequence ID: P0DOK8.1 Length: 1198 Range 1: 1 to 105 Score:220 bits(560), Expect:2e-68, Method:Composition-based stats., Identities:105/105(100%), Positives:105/105(100%), Gaps:0/105(0%) Query 1 MTKKPGGPGKNRAINMLKRGLPRVFPLVGVKRVVMSLLDGRGPVRFVLALITFFKFTALA 60 MTKKPGGPGKNRAINMLKRGLPRVFPLVGVKRVVMSLLDGRGPVRFVLALITFFKFTALA Sbjct 1 MTKKPGGPGKNRAINMLKRGLPRVFPLVGVKRVVMSLLDGRGPVRFVLALITFFKFTALA 60 Query 61 PTKALLGRWRAVEKSVAMKHLTSFKRELGTLIDAVNKRGKKQNKR 105 PTKALLGRWRAVEKSVAMKHLTSFKRELGTLIDAVNKRGKKQNKR Sbjct 61 PTKALLGRWRAVEKSVAMKHLTSFKRELGTLIDAVNKRGKKQNKR 105 >RecName: Full=Structural polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1'; Short=NS1' [Japanese encephalitis virus strain SA(V)] Sequence ID: P0DOH9.1 Length: 1198 Range 1: 1 to 105 Score:218 bits(555), Expect:1e-67, Method:Composition-based stats., Identities:103/105(98%), Positives:105/105(100%), Gaps:0/105(0%) Query 1 MTKKPGGPGKNRAINMLKRGLPRVFPLVGVKRVVMSLLDGRGPVRFVLALITFFKFTALA 60 MTKKPGGPGKNRAINMLKRGLPRVFPLVGVKRVVMSLLDGRGPVRFVLALITFFKFTALA Sbjct 1 MTKKPGGPGKNRAINMLKRGLPRVFPLVGVKRVVMSLLDGRGPVRFVLALITFFKFTALA 60 Query 61 PTKALLGRWRAVEKSVAMKHLTSFKRELGTLIDAVNKRGKKQNKR 105 PTKALLGRW+AVEKSVAMKHLTSFKRELGTLIDAVNKRG+KQNKR Sbjct 61 PTKALLGRWKAVEKSVAMKHLTSFKRELGTLIDAVNKRGRKQNKR 105 >RecName: Full=Structural polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1'; Short=NS1' [Japanese encephalitis virus strain SA-14] Sequence ID: P0DOH7.1 Length: 1198 Range 1: 1 to 105 Score:218 bits(555), Expect:1e-67, Method:Composition-based stats., Identities:103/105(98%), Positives:105/105(100%), Gaps:0/105(0%) Query 1 MTKKPGGPGKNRAINMLKRGLPRVFPLVGVKRVVMSLLDGRGPVRFVLALITFFKFTALA 60 MTKKPGGPGKNRAINMLKRGLPRVFPLVGVKRVVMSLLDGRGPVRFVLALITFFKFTALA Sbjct 1 MTKKPGGPGKNRAINMLKRGLPRVFPLVGVKRVVMSLLDGRGPVRFVLALITFFKFTALA 60 Query 61 PTKALLGRWRAVEKSVAMKHLTSFKRELGTLIDAVNKRGKKQNKR 105 PTKALLGRW+AVEKSVAMKHLTSFKRELGTLIDAVNKRG+KQNKR Sbjct 61 PTKALLGRWKAVEKSVAMKHLTSFKRELGTLIDAVNKRGRKQNKR 105 >RecName: Full=Structural polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1'; Short=NS1' [Japanese encephalitis virus strain JAOARS982] Sequence ID: P0DOH8.1 Length: 1198 Range 1: 1 to 105 Score:218 bits(554), Expect:2e-67, Method:Composition-based stats., Identities:103/105(98%), Positives:105/105(100%), Gaps:0/105(0%) Query 1 MTKKPGGPGKNRAINMLKRGLPRVFPLVGVKRVVMSLLDGRGPVRFVLALITFFKFTALA 60 MTKKPGGPGKNRAINMLKRGLPRVFPLVGVKRVVMSLLDGRGPVRFVLALITFFKFTALA Sbjct 1 MTKKPGGPGKNRAINMLKRGLPRVFPLVGVKRVVMSLLDGRGPVRFVLALITFFKFTALA 60 Query 61 PTKALLGRWRAVEKSVAMKHLTSFKRELGTLIDAVNKRGKKQNKR 105 PTKALLGRW+AVEKSVAMKHLTSFKRELGTLIDAVNKRG+KQNKR Sbjct 61 PTKALLGRWKAVEKSVAMKHLTSFKRELGTLIDAVNKRGRKQNKR 105 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Japanese encephalitis virus strain M28] Sequence ID: G3FEX6.1 Length: 3432 Range 1: 1 to 105 Score:212 bits(539), Expect:2e-65, Method:Compositional matrix adjust., Identities:105/105(100%), Positives:105/105(100%), Gaps:0/105(0%) Query 1 MTKKPGGPGKNRAINMLKRGLPRVFPLVGVKRVVMSLLDGRGPVRFVLALITFFKFTALA 60 MTKKPGGPGKNRAINMLKRGLPRVFPLVGVKRVVMSLLDGRGPVRFVLALITFFKFTALA Sbjct 1 MTKKPGGPGKNRAINMLKRGLPRVFPLVGVKRVVMSLLDGRGPVRFVLALITFFKFTALA 60 Query 61 PTKALLGRWRAVEKSVAMKHLTSFKRELGTLIDAVNKRGKKQNKR 105 PTKALLGRWRAVEKSVAMKHLTSFKRELGTLIDAVNKRGKKQNKR Sbjct 61 PTKALLGRWRAVEKSVAMKHLTSFKRELGTLIDAVNKRGKKQNKR 105 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Japanese encephalitis virus strain SA(V)] Sequence ID: P19110.1 Length: 3432 Range 1: 1 to 105 Score:209 bits(533), Expect:1e-64, Method:Compositional matrix adjust., Identities:103/105(98%), Positives:105/105(100%), Gaps:0/105(0%) Query 1 MTKKPGGPGKNRAINMLKRGLPRVFPLVGVKRVVMSLLDGRGPVRFVLALITFFKFTALA 60 MTKKPGGPGKNRAINMLKRGLPRVFPLVGVKRVVMSLLDGRGPVRFVLALITFFKFTALA Sbjct 1 MTKKPGGPGKNRAINMLKRGLPRVFPLVGVKRVVMSLLDGRGPVRFVLALITFFKFTALA 60 Query 61 PTKALLGRWRAVEKSVAMKHLTSFKRELGTLIDAVNKRGKKQNKR 105 PTKALLGRW+AVEKSVAMKHLTSFKRELGTLIDAVNKRG+KQNKR Sbjct 61 PTKALLGRWKAVEKSVAMKHLTSFKRELGTLIDAVNKRGRKQNKR 105 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Japanese encephalitis virus strain JAOARS982] Sequence ID: P32886.1 Length: 3432 Range 1: 1 to 105 Score:209 bits(533), Expect:1e-64, Method:Compositional matrix adjust., Identities:103/105(98%), Positives:105/105(100%), Gaps:0/105(0%) Query 1 MTKKPGGPGKNRAINMLKRGLPRVFPLVGVKRVVMSLLDGRGPVRFVLALITFFKFTALA 60 MTKKPGGPGKNRAINMLKRGLPRVFPLVGVKRVVMSLLDGRGPVRFVLALITFFKFTALA Sbjct 1 MTKKPGGPGKNRAINMLKRGLPRVFPLVGVKRVVMSLLDGRGPVRFVLALITFFKFTALA 60 Query 61 PTKALLGRWRAVEKSVAMKHLTSFKRELGTLIDAVNKRGKKQNKR 105 PTKALLGRW+AVEKSVAMKHLTSFKRELGTLIDAVNKRG+KQNKR Sbjct 61 PTKALLGRWKAVEKSVAMKHLTSFKRELGTLIDAVNKRGRKQNKR 105 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Japanese encephalitis virus strain SA-14] Sequence ID: P27395.1 Length: 3432 Range 1: 1 to 105 Score:209 bits(533), Expect:1e-64, Method:Compositional matrix adjust., Identities:103/105(98%), Positives:105/105(100%), Gaps:0/105(0%) Query 1 MTKKPGGPGKNRAINMLKRGLPRVFPLVGVKRVVMSLLDGRGPVRFVLALITFFKFTALA 60 MTKKPGGPGKNRAINMLKRGLPRVFPLVGVKRVVMSLLDGRGPVRFVLALITFFKFTALA Sbjct 1 MTKKPGGPGKNRAINMLKRGLPRVFPLVGVKRVVMSLLDGRGPVRFVLALITFFKFTALA 60 Query 61 PTKALLGRWRAVEKSVAMKHLTSFKRELGTLIDAVNKRGKKQNKR 105 PTKALLGRW+AVEKSVAMKHLTSFKRELGTLIDAVNKRG+KQNKR Sbjct 61 PTKALLGRWKAVEKSVAMKHLTSFKRELGTLIDAVNKRGRKQNKR 105 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Usutu virus] Sequence ID: Q5WPU5.1 Length: 3434 Range 1: 1 to 104 Score:179 bits(453), Expect:9e-54, Method:Compositional matrix adjust., Identities:84/104(81%), Positives:96/104(92%), Gaps:0/104(0%) Query 1 MTKKPGGPGKNRAINMLKRGLPRVFPLVGVKRVVMSLLDGRGPVRFVLALITFFKFTALA 60 M+KKPGGPG+NRAINMLKRG+PRVFPLVGVKRVVM LLDGRGPVRFVLAL+TFFKFTALA Sbjct 1 MSKKPGGPGRNRAINMLKRGIPRVFPLVGVKRVVMGLLDGRGPVRFVLALMTFFKFTALA 60 Query 61 PTKALLGRWRAVEKSVAMKHLTSFKRELGTLIDAVNKRGKKQNK 104 PTKALLGRW+ + K+ AMKHLTSFK+ELGT+I+ VN RG K+ + Sbjct 61 PTKALLGRWKRINKTTAMKHLTSFKKELGTMINVVNNRGTKKKR 104 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Murray valley encephalitis virus (strain MVE-1-51)] Sequence ID: P05769.2 Length: 3434 Range 1: 1 to 96 Score:166 bits(419), Expect:3e-49, Method:Compositional matrix adjust., Identities:77/96(80%), Positives:89/96(92%), Gaps:0/96(0%) Query 1 MTKKPGGPGKNRAINMLKRGLPRVFPLVGVKRVVMSLLDGRGPVRFVLALITFFKFTALA 60 M+KKPGGPGK R +NMLKRG+PRVFPLVGVKRVVM+LLDGRGP+RFVLAL+ FF+FTALA Sbjct 1 MSKKPGGPGKPRVVNMLKRGIPRVFPLVGVKRVVMNLLDGRGPIRFVLALLAFFRFTALA 60 Query 61 PTKALLGRWRAVEKSVAMKHLTSFKRELGTLIDAVN 96 PTKAL+ RW++V K+ AMKHLTSFK+ELGTLID VN Sbjct 61 PTKALMRRWKSVNKTTAMKHLTSFKKELGTLIDVVN 96 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease/Helicase NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=NS5 [West Nile virus strain NY-99] Sequence ID: Q9Q6P4.2 Length: 3433 Range 1: 1 to 105 Score:159 bits(402), Expect:7e-47, Method:Compositional matrix adjust., Identities:71/105(68%), Positives:90/105(85%), Gaps:0/105(0%) Query 1 MTKKPGGPGKNRAINMLKRGLPRVFPLVGVKRVVMSLLDGRGPVRFVLALITFFKFTALA 60 M+KKPGGPGK+RA+NMLKRG+PRV L+G+KR ++SL+DG+GP+RFVLAL+ FF+FTA+A Sbjct 1 MSKKPGGPGKSRAVNMLKRGMPRVLSLIGLKRAMLSLIDGKGPIRFVLALLAFFRFTAIA 60 Query 61 PTKALLGRWRAVEKSVAMKHLTSFKRELGTLIDAVNKRGKKQNKR 105 PT+A+L RWR V K AMKHL SFK+ELGTL A+N+R KQ KR Sbjct 61 PTRAVLDRWRGVNKQTAMKHLLSFKKELGTLTSAINRRSSKQKKR 105 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease/Helicase NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=NS5 [Kunjin virus (STRAIN MRM61C)] Sequence ID: P14335.1 Length: 3433 Range 1: 1 to 105 Score:159 bits(402), Expect:7e-47, Method:Compositional matrix adjust., Identities:72/105(69%), Positives:89/105(84%), Gaps:0/105(0%) Query 1 MTKKPGGPGKNRAINMLKRGLPRVFPLVGVKRVVMSLLDGRGPVRFVLALITFFKFTALA 60 M+KKPGGPGK+RA+NMLKRG+PRV L G+KR ++SL+DGRGP RFVLAL+ FF+FTA+A Sbjct 1 MSKKPGGPGKSRAVNMLKRGMPRVLSLTGLKRAMLSLIDGRGPTRFVLALLAFFRFTAIA 60 Query 61 PTKALLGRWRAVEKSVAMKHLTSFKRELGTLIDAVNKRGKKQNKR 105 PT+A+L RWR+V K AMKHL SFK+ELGTL A+N+R KQ KR Sbjct 61 PTRAVLDRWRSVNKQTAMKHLLSFKKELGTLTSAINRRSSKQKKR 105 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease/Helicase NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=NS5 [West Nile virus] Sequence ID: P06935.2 Length: 3430 Range 1: 1 to 105 Score:158 bits(399), Expect:2e-46, Method:Compositional matrix adjust., Identities:71/105(68%), Positives:89/105(84%), Gaps:0/105(0%) Query 1 MTKKPGGPGKNRAINMLKRGLPRVFPLVGVKRVVMSLLDGRGPVRFVLALITFFKFTALA 60 M+KKPGGPGKNRA+NMLKRG+PR L+G+KR ++SL+DG+GP+RFVLAL+ FF+FTA+A Sbjct 1 MSKKPGGPGKNRAVNMLKRGMPRGLSLIGLKRAMLSLIDGKGPIRFVLALLAFFRFTAIA 60 Query 61 PTKALLGRWRAVEKSVAMKHLTSFKRELGTLIDAVNKRGKKQNKR 105 PT+A+L RWR V K AMKHL SFK+ELGTL A+N+R KQ KR Sbjct 61 PTRAVLDRWRGVNKQTAMKHLLSFKKELGTLTSAINRRSTKQKKR 105 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=NS5 [St. Louis encephalitis virus (strain MS1-7)] Sequence ID: P09732.2 Length: 3412 Range 1: 1 to 102 Score:144 bits(362), Expect:2e-41, Method:Compositional matrix adjust., Identities:65/102(64%), Positives:86/102(84%), Gaps:0/102(0%) Query 1 MTKKPGGPGKNRAINMLKRGLPRVFPLVGVKRVVMSLLDGRGPVRFVLALITFFKFTALA 60 M+KKPG PG+NR +NMLKRG+ RV PL G+KR++ SLLDGRGPVRF+LA++TFF+FTAL Sbjct 1 MSKKPGKPGRNRVVNMLKRGVSRVNPLTGLKRILGSLLDGRGPVRFILAILTFFRFTALQ 60 Query 61 PTKALLGRWRAVEKSVAMKHLTSFKRELGTLIDAVNKRGKKQ 102 PT+AL RWRAV+K A+KHL FKR+LG+++D +N+R K+ Sbjct 61 PTEALKRRWRAVDKRTALKHLNGFKRDLGSMLDTINRRPSKK 102 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=NS5 [Kokobera virus] Sequence ID: Q32ZD5.1 Length: 3410 Range 1: 1 to 103 Score:106 bits(265), Expect:2e-28, Method:Compositional matrix adjust., Identities:54/103(52%), Positives:73/103(70%), Gaps:1/103(0%) Query 1 MTKKPGGPGKNRAINMLKRGLPRVF-PLVGVKRVVMSLLDGRGPVRFVLALITFFKFTAL 59 MTKKPG PG+NRA+NMLKRG R P++ +KR++ LLDGRGP+R VLA++ FF+FTAL Sbjct 1 MTKKPGRPGRNRAVNMLKRGASRALGPMIKLKRMLFGLLDGRGPLRMVLAILAFFRFTAL 60 Query 60 APTKALLGRWRAVEKSVAMKHLTSFKRELGTLIDAVNKRGKKQ 102 PT LL RW ++K A+ L FK++L ++ D V+ KK Sbjct 61 KPTAGLLKRWGMMDKVHALSLLKGFKKDLASMTDFVHLPKKKS 103 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Ilheus virus] Sequence ID: Q32ZD7.1 Length: 3424 Range 1: 1 to 100 Score:106 bits(264), Expect:3e-28, Method:Composition-based stats., Identities:53/102(52%), Positives:72/102(70%), Gaps:2/102(1%) Query 1 MTKKPGGPGKNRAINMLKRGLPRVFPLVGVKRVVMSLLDGRGPVRFVLALITFFKFTALA 60 M+KKPG R +NMLKR L V P G +R + +LD RG R +LAL+ FF+F A+ Sbjct 1 MSKKPGKSAAKRTVNMLKR-LASVSPSRG-RRTIRRMLDVRGAPRLILALMAFFRFAAIK 58 Query 61 PTKALLGRWRAVEKSVAMKHLTSFKRELGTLIDAVNKRGKKQ 102 PT L RWR+V K+VA+KHLT+FK+EL T++D+VNKR +K+ Sbjct 59 PTLGLKKRWRSVNKTVAVKHLTNFKKELTTMLDSVNKRKEKK 100 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Rocio virus] Sequence ID: Q32ZD4.1 Length: 3425 Range 1: 1 to 101 Score:101 bits(251), Expect:1e-26, Method:Composition-based stats., Identities:54/102(53%), Positives:75/102(73%), Gaps:1/102(0%) Query 1 MTKKPGGPGKNRAINMLKRGLPRVFPLVGVKRVVMSLLDGRGPVRFVLALITFFKFTALA 60 M+KKPGGP R +NMLKR V P+ G+KR++ +L DGRGP+R VLA I FF+F A+ Sbjct 1 MSKKPGGPAGRRVVNMLKRP-ASVSPIKGIKRLIGNLTDGRGPLRVVLAFIAFFRFAAIM 59 Query 61 PTKALLGRWRAVEKSVAMKHLTSFKRELGTLIDAVNKRGKKQ 102 PT+ LL RWR + KS A+KHLTSFK+E+ +++ +N+R K+ Sbjct 60 PTQGLLRRWRVMNKSEALKHLTSFKKEISNMLNIINRRKAKR 101 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=NS5 [Bussuquara virus] Sequence ID: Q32ZE0.1 Length: 3429 Range 1: 1 to 104 Score:89.4 bits(220), Expect:2e-22, Method:Compositional matrix adjust., Identities:48/105(46%), Positives:69/105(65%), Gaps:2/105(1%) Query 1 MTKKPGGPGKNRAINMLKRGLPRV-FPLVGVKRVVMSLLDGRGPVRFVLALITFFKFTAL 59 M +KPG PG NR +NMLKR PL KR++ GRGP+R +LA++ FF+FTA+ Sbjct 1 MARKPGRPGGNRVVNMLKRTAANAASPLGLAKRLLGDAFAGRGPLRVILAVVAFFRFTAI 60 Query 60 APTKALLGRWRAVEKSVAMKHLTSFKRELGTLIDAVNKRGKKQNK 104 + ALL +W VEK A+ + SFK+E+G+++D V +R K +NK Sbjct 61 KMSPALLKKWGTVEKGAAIAIMKSFKKEIGSMLDVVARR-KTKNK 104 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Capsid protein; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; AltName: Full=Precursor membrane protein; Contains: RecName: Full=Peptide pr; AltName: Full=Peptide precursor; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=NS5 [Zika virus ZIKV/Human/Cambodia/FSS13025/2010] Sequence ID: A0A142I5B9.1 Length: 3423 Range 1: 6 to 104 Score:83.2 bits(204), Expect:3e-20, Method:Compositional matrix adjust., Identities:44/102(43%), Positives:66/102(64%), Gaps:3/102(2%) Query 3 KKPGGPGKNRAINMLKRGLPRVFPLVGVKRVVMSLLDGRGPVRFVLALITFFKFTALAPT 62 KK GG R +NMLKRG+ RV P G+KR+ LL G GP+R VLA++ F +FTA+ P+ Sbjct 6 KKSGG---FRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPIRMVLAILAFLRFTAIKPS 62 Query 63 KALLGRWRAVEKSVAMKHLTSFKRELGTLIDAVNKRGKKQNK 104 L+ RW +V K AM+ + FK++L ++ +N R +K+ + Sbjct 63 LGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKKRR 104 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Capsid protein; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; AltName: Full=Precursor membrane protein; Contains: RecName: Full=Peptide pr; AltName: Full=Peptide precursor; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=NS5 [Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013] Sequence ID: A0A024B7W1.1 Length: 3423 Range 1: 6 to 104 Score:83.2 bits(204), Expect:3e-20, Method:Compositional matrix adjust., Identities:44/102(43%), Positives:66/102(64%), Gaps:3/102(2%) Query 3 KKPGGPGKNRAINMLKRGLPRVFPLVGVKRVVMSLLDGRGPVRFVLALITFFKFTALAPT 62 KK GG R +NMLKRG+ RV P G+KR+ LL G GP+R VLA++ F +FTA+ P+ Sbjct 6 KKSGG---FRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPIRMVLAILAFLRFTAIKPS 62 Query 63 KALLGRWRAVEKSVAMKHLTSFKRELGTLIDAVNKRGKKQNK 104 L+ RW +V K AM+ + FK++L ++ +N R +K+ + Sbjct 63 LGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKKRR 104 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Capsid protein; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; AltName: Full=Precursor membrane protein; Contains: RecName: Full=Peptide pr; AltName: Full=Peptide precursor; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=NS5 [Zika virus] Sequence ID: Q32ZE1.1 Length: 3419 Range 1: 12 to 103 Score:83.2 bits(204), Expect:3e-20, Method:Compositional matrix adjust., Identities:43/94(46%), Positives:63/94(67%), Gaps:2/94(2%) Query 12 RAINMLKRGLPRVFPLVGVKRVVMSLLDGRGPVRFVLALITFFKFTALAPTKALLGRWRA 71 R +NMLKRG+ RV PL G+KR+ LL G GP+R VLA++ F +FTA+ P+ L+ RW + Sbjct 12 RIVNMLKRGVARVNPLGGLKRLPAGLLLGHGPIRMVLAILAFLRFTAIKPSLGLINRWGS 71 Query 72 VEKSVAMKHLTSFKRELGTLIDAVNKRGKKQNKR 105 V K AM+ + FK++L ++ +N R K+ KR Sbjct 72 VGKKEAMEIIKKFKKDLAAMLRIINAR--KERKR 103 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 3 Singapore/8120/1995] Sequence ID: Q5UB51.1 Length: 3390 Range 1: 6 to 100 Score:74.7 bits(182), Expect:3e-17, Method:Composition-based stats., Identities:42/99(42%), Positives:59/99(59%), Gaps:5/99(5%) Query 3 KKPGGPGKNRAINMLKRGLPRVFPLVGV-KRVVMSLLDGRGPVRFVLALITFFKFTALAP 61 KK G P +INMLKR RV + KR LL+G+GP++ V+A I F +F A+ P Sbjct 6 KKTGKP----SINMLKRVRNRVSTGSQLAKRFSRGLLNGQGPMKLVMAFIAFLRFLAIPP 61 Query 62 TKALLGRWRAVEKSVAMKHLTSFKRELGTLIDAVNKRGK 100 T +L RW +KS A+K L FK+E+ ++ +NKR K Sbjct 62 TAGVLARWGTFKKSGAIKVLKGFKKEISNMLSIINKRKK 100 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 3 Martinique/1243/1999] Sequence ID: Q6YMS3.1 Length: 3390 Range 1: 6 to 100 Score:74.7 bits(182), Expect:3e-17, Method:Composition-based stats., Identities:42/99(42%), Positives:59/99(59%), Gaps:5/99(5%) Query 3 KKPGGPGKNRAINMLKRGLPRVFPLVGV-KRVVMSLLDGRGPVRFVLALITFFKFTALAP 61 KK G P +INMLKR RV + KR LL+G+GP++ V+A I F +F A+ P Sbjct 6 KKTGKP----SINMLKRVRNRVSTGSQLAKRFSKGLLNGQGPMKLVMAFIAFLRFLAIPP 61 Query 62 TKALLGRWRAVEKSVAMKHLTSFKRELGTLIDAVNKRGK 100 T +L RW +KS A+K L FK+E+ ++ +NKR K Sbjct 62 TAGVLARWGTFKKSGAIKVLKGFKKEISNMLSIINKRKK 100 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 3 China/80-2/1980] Sequence ID: Q99D35.1 Length: 3390 Range 1: 6 to 100 Score:74.7 bits(182), Expect:3e-17, Method:Composition-based stats., Identities:42/99(42%), Positives:59/99(59%), Gaps:5/99(5%) Query 3 KKPGGPGKNRAINMLKRGLPRVFPLVGV-KRVVMSLLDGRGPVRFVLALITFFKFTALAP 61 KK G P +INMLKR RV + KR LL+G+GP++ V+A I F +F A+ P Sbjct 6 KKTGKP----SINMLKRVRNRVSTGSQLAKRFSRGLLNGQGPMKLVMAFIAFLRFLAIPP 61 Query 62 TKALLGRWRAVEKSVAMKHLTSFKRELGTLIDAVNKRGK 100 T +L RW +KS A+K L FK+E+ ++ +NKR K Sbjct 62 TAGVLARWGTFKKSGAIKVLKGFKKEISNMLSIINKRKK 100 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 3 Philippines/H87/1956] Sequence ID: P27915.1 Length: 3390 Range 1: 6 to 100 Score:74.7 bits(182), Expect:3e-17, Method:Composition-based stats., Identities:42/99(42%), Positives:59/99(59%), Gaps:5/99(5%) Query 3 KKPGGPGKNRAINMLKRGLPRVFPLVGV-KRVVMSLLDGRGPVRFVLALITFFKFTALAP 61 KK G P +INMLKR RV + KR LL+G+GP++ V+A I F +F A+ P Sbjct 6 KKTGKP----SINMLKRVRNRVSTGSQLAKRFSRGLLNGQGPMKLVMAFIAFLRFLAIPP 61 Query 62 TKALLGRWRAVEKSVAMKHLTSFKRELGTLIDAVNKRGK 100 T +L RW +KS A+K L FK+E+ ++ +NKR K Sbjct 62 TAGVLARWGTFKKSGAIKVLKGFKKEISNMLSIINKRKK 100 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 3 Sri Lanka/1266/2000] Sequence ID: Q6YMS4.1 Length: 3390 Range 1: 6 to 100 Score:73.6 bits(179), Expect:8e-17, Method:Composition-based stats., Identities:41/99(41%), Positives:59/99(59%), Gaps:5/99(5%) Query 3 KKPGGPGKNRAINMLKRGLPRVFPLVGV-KRVVMSLLDGRGPVRFVLALITFFKFTALAP 61 KK G P +INMLKR RV + KR LL+G+GP++ V+A I F +F A+ P Sbjct 6 KKTGKP----SINMLKRVRNRVSTGSQLAKRFSKGLLNGQGPMKLVMAFIAFLRFLAIPP 61 Query 62 TKALLGRWRAVEKSVAMKHLTSFKRELGTLIDAVNKRGK 100 T +L RW +KS A+K L FK+E+ ++ +N+R K Sbjct 62 TAGVLARWGTFKKSGAIKVLKGFKKEISNMLSIINQRKK 100 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 2 Thailand/0168/1979] Sequence ID: P14337.2 Length: 3391 Range 1: 8 to 98 Score:72.8 bits(177), Expect:2e-16, Method:Composition-based stats., Identities:34/91(37%), Positives:56/91(61%), Gaps:1/91(1%) Query 9 GKNRAINMLKRGLPRVFPLVGV-KRVVMSLLDGRGPVRFVLALITFFKFTALAPTKALLG 67 KN NMLKR RV + + KR + +L GRGP++ +AL+ F +F + PT +L Sbjct 8 AKNTPFNMLKRERNRVSTVQQLTKRFSLGMLQGRGPLKLFMALVAFLRFLTIPPTAGILK 67 Query 68 RWRAVEKSVAMKHLTSFKRELGTLIDAVNKR 98 RW ++KS A+ L F++E+G +++ +N+R Sbjct 68 RWGTIKKSKAINVLRGFRKEIGRMLNILNRR 98 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 2 16681-PDK53] Sequence ID: P29991.1 Length: 3391 Range 1: 8 to 98 Score:72.4 bits(176), Expect:2e-16, Method:Composition-based stats., Identities:34/91(37%), Positives:56/91(61%), Gaps:1/91(1%) Query 9 GKNRAINMLKRGLPRVFPLVGV-KRVVMSLLDGRGPVRFVLALITFFKFTALAPTKALLG 67 KN NMLKR RV + + KR + +L GRGP++ +AL+ F +F + PT +L Sbjct 8 AKNTPFNMLKRERNRVSTVQQLTKRFSLGMLQGRGPLKLYMALVAFLRFLTIPPTAGILK 67 Query 68 RWRAVEKSVAMKHLTSFKRELGTLIDAVNKR 98 RW ++KS A+ L F++E+G +++ +N+R Sbjct 68 RWGTIKKSKAINVLRGFRKEIGRMLNILNRR 98 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 2 Thailand/16681/84] Sequence ID: P29990.1 Length: 3391 Range 1: 8 to 98 Score:72.4 bits(176), Expect:2e-16, Method:Composition-based stats., Identities:34/91(37%), Positives:56/91(61%), Gaps:1/91(1%) Query 9 GKNRAINMLKRGLPRVFPLVGV-KRVVMSLLDGRGPVRFVLALITFFKFTALAPTKALLG 67 KN NMLKR RV + + KR + +L GRGP++ +AL+ F +F + PT +L Sbjct 8 AKNTPFNMLKRERNRVSTVQQLTKRFSLGMLQGRGPLKLYMALVAFLRFLTIPPTAGILK 67 Query 68 RWRAVEKSVAMKHLTSFKRELGTLIDAVNKR 98 RW ++KS A+ L F++E+G +++ +N+R Sbjct 68 RWGTIKKSKAINVLRGFRKEIGRMLNILNRR 98 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Capsid protein; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; AltName: Full=Precursor membrane protein; Contains: RecName: Full=Peptide pr; AltName: Full=Peptide precursor; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 1 Nauru/West Pac/1974] Sequence ID: P17763.2 Length: 3392 Range 1: 6 to 100 Score:72.4 bits(176), Expect:2e-16, Method:Composition-based stats., Identities:38/99(38%), Positives:60/99(60%), Gaps:5/99(5%) Query 3 KKPGGPGKNRAINMLKRGLPRVFPLVGV-KRVVMSLLDGRGPVRFVLALITFFKFTALAP 61 KK G P + NMLKR RV + + KR LL G+GP++ V+A I F +F A+ P Sbjct 6 KKTGRP----SFNMLKRARNRVSTVSQLAKRFSKGLLSGQGPMKLVMAFIAFLRFLAIPP 61 Query 62 TKALLGRWRAVEKSVAMKHLTSFKRELGTLIDAVNKRGK 100 T +L RW + +K+ A+K L FK+E+ +++ +N+R + Sbjct 62 TAGILARWGSFKKNGAIKVLRGFKKEISNMLNIMNRRKR 100 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Non-structural protein 2A-alpha; Short=NS2A-alpha; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 1 Brazil/97-11/1997] Sequence ID: P27909.2 Length: 3392 Range 1: 6 to 100 Score:72.0 bits(175), Expect:3e-16, Method:Composition-based stats., Identities:38/99(38%), Positives:60/99(60%), Gaps:5/99(5%) Query 3 KKPGGPGKNRAINMLKRGLPRVFPLVGV-KRVVMSLLDGRGPVRFVLALITFFKFTALAP 61 KK G P + NMLKR RV + KR LL G+GP++ V+A I F +F A+ P Sbjct 6 KKTGRP----SFNMLKRARNRVSTGSQLAKRFSKGLLSGQGPMKLVMAFIAFLRFLAIPP 61 Query 62 TKALLGRWRAVEKSVAMKHLTSFKRELGTLIDAVNKRGK 100 T +L RW + +K+ A+K L FK+E+ ++++ +N+R + Sbjct 62 TAGILARWSSFKKNGAIKVLRGFKKEISSMLNIMNRRKR 100 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 2 Thailand/NGS-C/1944] Sequence ID: P14340.2 Length: 3391 Range 1: 8 to 98 Score:71.6 bits(174), Expect:4e-16, Method:Composition-based stats., Identities:33/91(36%), Positives:56/91(61%), Gaps:1/91(1%) Query 9 GKNRAINMLKRGLPRVFPLVGV-KRVVMSLLDGRGPVRFVLALITFFKFTALAPTKALLG 67 +N NMLKR RV + + KR + +L GRGP++ +AL+ F +F + PT +L Sbjct 8 ARNTPFNMLKRERNRVSTVQQLTKRFSLGMLQGRGPLKLFMALVAFLRFLTIPPTAGILK 67 Query 68 RWRAVEKSVAMKHLTSFKRELGTLIDAVNKR 98 RW ++KS A+ L F++E+G +++ +N+R Sbjct 68 RWGTIKKSKAINVLRGFRKEIGRMLNILNRR 98 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 2 Peru/IQT2913/1996] Sequence ID: Q9WDA6.1 Length: 3391 Range 1: 8 to 98 Score:71.6 bits(174), Expect:4e-16, Method:Composition-based stats., Identities:33/91(36%), Positives:56/91(61%), Gaps:1/91(1%) Query 9 GKNRAINMLKRGLPRVFPLVGV-KRVVMSLLDGRGPVRFVLALITFFKFTALAPTKALLG 67 +N NMLKR RV + + KR + +L GRGP++ +AL+ F +F + PT +L Sbjct 8 ARNTPFNMLKRERNRVSTVQQLTKRFSLGMLQGRGPLKLFMALVAFLRFLTIPPTAGILK 67 Query 68 RWRAVEKSVAMKHLTSFKRELGTLIDAVNKR 98 RW ++KS A+ L F++E+G +++ +N+R Sbjct 68 RWGTIKKSKAINVLRGFRKEIGRMLNILNRR 98 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 2 Puerto Rico/PR159-S1/1969] Sequence ID: P12823.1 Length: 3388 Range 1: 8 to 98 Score:71.6 bits(174), Expect:4e-16, Method:Composition-based stats., Identities:33/91(36%), Positives:56/91(61%), Gaps:1/91(1%) Query 9 GKNRAINMLKRGLPRVFPLVGV-KRVVMSLLDGRGPVRFVLALITFFKFTALAPTKALLG 67 +N NMLKR RV + + KR + +L GRGP++ +AL+ F +F + PT +L Sbjct 8 ARNTPFNMLKRERNRVSTVQQLTKRFSLGMLQGRGPLKLFMALVAFLRFLTIPPTAGILK 67 Query 68 RWRAVEKSVAMKHLTSFKRELGTLIDAVNKR 98 RW ++KS A+ L F++E+G +++ +N+R Sbjct 68 RWGTIKKSKAINVLRGFRKEIGRMLNILNRR 98 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 2 Jamaica/1409/1983] Sequence ID: P07564.2 Length: 3391 Range 1: 8 to 98 Score:69.7 bits(169), Expect:2e-15, Method:Composition-based stats., Identities:32/91(35%), Positives:56/91(61%), Gaps:1/91(1%) Query 9 GKNRAINMLKRGLPRVFPLVGV-KRVVMSLLDGRGPVRFVLALITFFKFTALAPTKALLG 67 ++ NMLKR RV + + KR + +L GRGP++ +AL+ F +F + PT +L Sbjct 8 ARSTPFNMLKRERNRVSTVQQLTKRFSLGMLQGRGPLKLFMALVAFLRFLTIPPTAGILK 67 Query 68 RWRAVEKSVAMKHLTSFKRELGTLIDAVNKR 98 RW ++KS A+ L F++E+G +++ +N+R Sbjct 68 RWGTIKKSKAINVLRGFRKEIGRMLNILNRR 98 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 1 Singapore/S275/1990] Sequence ID: P33478.2 Length: 3391 Range 1: 12 to 100 Score:68.9 bits(167), Expect:3e-15, Method:Composition-based stats., Identities:34/89(38%), Positives:55/89(61%), Gaps:1/89(1%) Query 13 AINMLKRGLPRVFPLVGV-KRVVMSLLDGRGPVRFVLALITFFKFTALAPTKALLGRWRA 71 + NMLKR RV + KR LL G+GP++ V+A I F +F A+ PT +L RW + Sbjct 12 SFNMLKRARNRVSTGSQLAKRFSKGLLSGQGPMKLVMAFIAFLRFLAIPPTAGILARWGS 71 Query 72 VEKSVAMKHLTSFKRELGTLIDAVNKRGK 100 +K+ A+K L FK+E+ +++ +N+R + Sbjct 72 FKKNGAIKVLRGFKKEISNMLNIMNRRKR 100 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1 [Dengue virus 1 Jamaica/CV1636/1977] Sequence ID: P27913.1 Length: 791 Range 1: 6 to 98 Score:65.9 bits(159), Expect:3e-14, Method:Compositional matrix adjust., Identities:38/97(39%), Positives:59/97(60%), Gaps:5/97(5%) Query 3 KKPGGPGKNRAINMLKRGLPRVFPLVGV-KRVVMSLLDGRGPVRFVLALITFFKFTALAP 61 KK G P + NMLKR RV + KR LL G+GP++ V+A I F +F A+ P Sbjct 6 KKTGRP----SFNMLKRARNRVSTGSQLAKRFSKGLLSGQGPMKLVMAFIAFLRFLAIPP 61 Query 62 TKALLGRWRAVEKSVAMKHLTSFKRELGTLIDAVNKR 98 T +L RW + +K+ A+K L FK+E+ ++++ +N+R Sbjct 62 TAGILARWSSFKKNGAIKVLRGFKKEISSMLNIMNRR 98 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3 [Japanese encephalitis virus strain Nakayama] Sequence ID: P14403.1 Length: 1440 Range 1: 1 to 31 Score:65.5 bits(158), Expect:5e-14, Method:Composition-based stats., Identities:30/31(97%), Positives:31/31(100%), Gaps:0/31(0%) Query 75 SVAMKHLTSFKRELGTLIDAVNKRGKKQNKR 105 SVAMKHLTSFKRELGTLIDAVNKRG+KQNKR Sbjct 1 SVAMKHLTSFKRELGTLIDAVNKRGRKQNKR 31 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1 [Dengue virus 2 China/D2-04] Sequence ID: P30026.1 Length: 1127 Range 1: 8 to 98 Score:61.6 bits(148), Expect:1e-12, Method:Composition-based stats., Identities:28/91(31%), Positives:54/91(59%), Gaps:1/91(1%) Query 9 GKNRAINMLKRGLPRVFPLVGV-KRVVMSLLDGRGPVRFVLALITFFKFTALAPTKALLG 67 ++ NML+R RV + + KR + +L GRGP++ +AL+ +F + PT +L Sbjct 8 ARSTPFNMLRRERNRVSTVQQLTKRFSLGMLQGRGPLKLFMALVALPRFLTIPPTAGILK 67 Query 68 RWRAVEKSVAMKHLTSFKRELGTLIDAVNKR 98 RW ++KS A+ + ++E+G +++ +N+R Sbjct 68 RWGTIKKSKAINDVRGCRKEIGRMLNILNRR 98