BLASTP 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: my_bacs.fasta 22,502 sequences; 6,601,678 total letters Query= sp|P50866|CLPX_BACSU ATP-dependent Clp protease ATP-binding subunit ClpX OS=Bacillus subtilis (strain 168) GN=clpX PE=2 SV=3 Length=420 Score E Sequences producing significant alignments: (Bits) Value sp|P50866|CLPX_BACSU ATP-dependent Clp protease ATP-binding sub... 840 0.0 sp|Q81LB9|CLPX_BACAN ATP-dependent Clp protease ATP-binding sub... 733 0.0 sp|Q8Y7K9|CLPX_LISMO ATP-dependent Clp protease ATP-binding sub... 683 0.0 sp|A7X396|CLPX_STAA1 ATP-dependent Clp protease ATP-binding sub... 607 0.0 sp|Q8GJP6|CLPX_LACLM ATP-dependent Clp protease ATP-binding sub... 566 0.0 tr|B0S2N5|B0S2N5_FINM2 ATP-dependent Clp protease ATP-binding s... 560 0.0 tr|Q5FKR6|Q5FKR6_LACAC ATP-dependent Clp protease ATP-binding s... 548 0.0 sp|P63793|CLPX_STRP1 ATP-dependent Clp protease ATP-binding sub... 547 0.0 sp|Q5FKD8|HSLU_LACAC ATP-dependent protease ATPase subunit HslU... 104 1e-24 sp|P39778|CLPY_BACSU ATP-dependent protease ATPase subunit ClpY... 100 4e-23 sp|A7X1N1|HSLU_STAA1 ATP-dependent protease ATPase subunit HslU... 98.6 2e-22 sp|Q81WK6|HSLU_BACAN ATP-dependent protease ATPase subunit HslU... 97.8 2e-22 sp|Q8Y7J8|HSLU_LISMO ATP-dependent protease ATPase subunit HslU... 97.8 2e-22 tr|Q81VV9|Q81VV9_BACAN ATP-dependent Clp protease, ATP-binding ... 60.5 5e-10 sp|P37571|CLPC_BACSU Negative regulator of genetic competence C... 56.6 9e-09 tr|A7X6Q9|A7X6Q9_STAA1 ATP-dependent Clp proteinase chain OS=St... 55.8 2e-08 sp|O31673|CLPE_BACSU ATP-dependent Clp protease ATP-binding sub... 54.7 3e-08 tr|A2RIW9|A2RIW9_LACLM ATP-dependent Clp protease ATP-binding s... 53.9 5e-08 tr|A7WYU0|A7WYU0_STAA1 Endopeptidase OS=Staphylococcus aureus (... 53.9 7e-08 tr|Q8Y8B1|Q8Y8B1_LISMO ATP-dependent protease OS=Listeria monoc... 52.4 2e-07 tr|Q8YAB6|Q8YAB6_LISMO Endopeptidase Clp ATP-binding chain C OS... 52.4 2e-07 tr|B0S3X9|B0S3X9_FINM2 ATP-dependent protease Clp ATP-binding s... 51.2 4e-07 tr|B0S0E3|B0S0E3_FINM2 ATP-dependent zinc metalloprotease FtsH ... 50.4 6e-07 tr|Q5FM98|Q5FM98_LACAC ATPase OS=Lactobacillus acidophilus (str... 47.0 1e-05 tr|Q99XR9|Q99XR9_STRP1 Negative regulator of genetic competence... 46.2 2e-05 tr|Q5FHW6|Q5FHW6_LACAC ATP-dependent protease OS=Lactobacillus ... 45.8 2e-05 tr|Q9A200|Q9A200_STRP1 ATP-dependent zinc metalloprotease FtsH ... 45.1 3e-05 tr|B0S3J0|B0S3J0_FINM2 ATP-dependent protease Clp ATP-binding s... 45.1 4e-05 tr|A7X289|A7X289_STAA1 Uncharacterized protein OS=Staphylococcu... 42.0 2e-04 tr|Q81VX5|Q81VX5_BACAN ATP-dependent zinc metalloprotease FtsH ... 41.6 4e-04 tr|Q8YAC6|Q8YAC6_LISMO ATP-dependent zinc metalloprotease FtsH ... 41.6 5e-04 sp|Q8Y6Z8|RUVB_LISMO Holliday junction ATP-dependent DNA helica... 40.8 5e-04 tr|Q5FMA3|Q5FMA3_LACAC ATP-dependent zinc metalloprotease FtsH ... 40.8 7e-04 tr|Q5FLA7|Q5FLA7_LACAC ATP-dependent Clp protease, ATP-binding ... 40.8 7e-04 tr|B0S222|B0S222_FINM2 ATP-dependent zinc metalloprotease FtsH ... 40.8 8e-04 tr|A2RH93|A2RH93_LACLM ATP-dependent zinc metalloprotease FtsH ... 40.4 0.001 > sp|P50866|CLPX_BACSU ATP-dependent Clp protease ATP-binding subunit ClpX OS=Bacillus subtilis (strain 168) GN=clpX PE=2 SV=3 Length=420 Score = 840 bits (2171), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/420 (100%), Positives = 420/420 (100%), Gaps = 0/420 (0%) Query 1 MFKFNEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKD 60 MFKFNEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKD Sbjct 1 MFKFNEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKD 60 Query 61 VPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGS 120 VPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGS Sbjct 61 VPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGS 120 Query 121 GKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYI 180 GKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYI Sbjct 121 GKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYI 180 Query 181 DEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI 240 DEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI Sbjct 181 DEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI 240 Query 241 LFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPEFIG 300 LFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPEFIG Sbjct 241 LFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPEFIG 300 Query 301 RLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERK 360 RLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERK Sbjct 301 RLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERK 360 Query 361 TGARGLRSIIEGIMLDVMFELPSRDDIEKCVITGATVTHGEPPRLLLKDGTEVSQDKTSA 420 TGARGLRSIIEGIMLDVMFELPSRDDIEKCVITGATVTHGEPPRLLLKDGTEVSQDKTSA Sbjct 361 TGARGLRSIIEGIMLDVMFELPSRDDIEKCVITGATVTHGEPPRLLLKDGTEVSQDKTSA 420 > sp|Q81LB9|CLPX_BACAN ATP-dependent Clp protease ATP-binding subunit ClpX OS=Bacillus anthracis GN=clpX PE=3 SV=1 Length=419 Score = 733 bits (1891), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/420 (87%), Positives = 393/420 (94%), Gaps = 1/420 (0%) Query 1 MFKFNEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKD 60 MFKFN+EKGQLKCSFCGKTQ QVRKLVAGPGVYICDECIELCTEIV+EEL +EEVEFKD Sbjct 1 MFKFNDEKGQLKCSFCGKTQTQVRKLVAGPGVYICDECIELCTEIVQEELAKDEEVEFKD 60 Query 61 VPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGS 120 VPKP EIREIL+EYVIGQD AKK+LAVAVYNHYKRINSNSK+DDVEL+KSNI+LIGPTGS Sbjct 61 VPKPVEIREILDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELAKSNIALIGPTGS 120 Query 121 GKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYI 180 GKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYI Sbjct 121 GKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYI 180 Query 181 DEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI 240 DEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI Sbjct 181 DEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI 240 Query 241 LFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPEFIG 300 LFICGGAFDGIE IIKRRLG+KVIGFG++ K AD+ ++ +LS VLPEDLLRFGLIPEFIG Sbjct 241 LFICGGAFDGIEPIIKRRLGEKVIGFGSEKKNADVNEKHVLSHVLPEDLLRFGLIPEFIG 300 Query 301 RLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERK 360 RLPVIA+LE LDE+ALV ILTKPKNALVKQF+K+LELD+VELEFEE AL EIAKKAIERK Sbjct 301 RLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEGALIEIAKKAIERK 360 Query 361 TGARGLRSIIEGIMLDVMFELPSRDDIEKCVITGATVTHGEPPRLLLKDGTEVSQDKTSA 420 TGARGLRSIIEG+ML+VMFELPSR DIEKC++T TV P+L+L+DGT V KTSA Sbjct 361 TGARGLRSIIEGLMLEVMFELPSRKDIEKCILTKETVADNAAPKLVLQDGT-VLDTKTSA 419 > sp|Q8Y7K9|CLPX_LISMO ATP-dependent Clp protease ATP-binding subunit ClpX OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=clpX PE=3 SV=1 Length=419 Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/421 (82%), Positives = 381/421 (90%), Gaps = 3/421 (1%) Query 1 MFKFNEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKD 60 MFKFN+EKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELC EI+EEELG E V+F + Sbjct 1 MFKFNDEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCNEIIEEELGISEFVDFGE 60 Query 61 VPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSN-SKVDDVELSKSNISLIGPTG 119 VPKPQEIR IL++YVIGQ++AKK+LAVAVYNHYKRINSN +K D+VELSKSNI LIGPTG Sbjct 61 VPKPQEIRHILSDYVIGQERAKKALAVAVYNHYKRINSNETKEDEVELSKSNICLIGPTG 120 Query 120 SGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIY 179 SGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQ+ADYDVEKAEKGIIY Sbjct 121 SGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQSADYDVEKAEKGIIY 180 Query 180 IDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTN 239 IDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQE IQIDT N Sbjct 181 IDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQELIQIDTGN 240 Query 240 ILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPEFI 299 ILFI GGAFDGIEQI+K R+G+KVIGFG DN A + E LS+V+PEDLL+FGLIPEFI Sbjct 241 ILFIVGGAFDGIEQIVKNRMGEKVIGFGTDN-AKLKDDETYLSRVVPEDLLKFGLIPEFI 299 Query 300 GRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIER 359 GRLPVIA+LE+LDE ALV+ILT+PKNALVKQ+K+MLELD+VELEFE AL EIAK+AIER Sbjct 300 GRLPVIATLEQLDEAALVSILTEPKNALVKQYKRMLELDDVELEFEPTALIEIAKEAIER 359 Query 360 KTGARGLRSIIEGIMLDVMFELPSRDDIEKCVITGATVTHGEPPRLLLKDGTEVSQDKTS 419 KTGARGLRSIIE IML+VMFE+PSRDDI KC+IT E P+L L+DG+ + KTS Sbjct 360 KTGARGLRSIIEQIMLEVMFEIPSRDDITKCIITEKAARGEEEPQLQLEDGS-IIPIKTS 418 Query 420 A 420 A Sbjct 419 A 419 > sp|A7X396|CLPX_STAA1 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=clpX PE=3 SV=1 Length=420 Score = 607 bits (1566), Expect = 0.0, Method: Compositional matrix adjust. Identities = 301/421 (71%), Positives = 356/421 (85%), Gaps = 2/421 (0%) Query 1 MFKFNEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKD 60 MFKFNE++ LKCSFCGK QDQV+KLVAG GVYIC+ECIELC+EIVEEEL + Sbjct 1 MFKFNEDEENLKCSFCGKDQDQVKKLVAGSGVYICNECIELCSEIVEEELAQNTSEAMTE 60 Query 61 VPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINS-NSKVDDVELSKSNISLIGPTG 119 +P P+EI + LNEYVIGQ++AKKSLAVAVYNHYKRI K DDVEL KSNI+LIGPTG Sbjct 61 LPTPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPKEDDVELQKSNIALIGPTG 120 Query 120 SGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIY 179 SGKTLLAQTLA+ LNVPFAIADATSLTEAGYVG+DVENILL+LIQAAD+D++KAEKGIIY Sbjct 121 SGKTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAADFDIDKAEKGIIY 180 Query 180 IDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTN 239 +DEIDK+ARKSEN SITRDVSGEGVQQALLKILEGT ASVPPQGGRKHP+QE IQIDTTN Sbjct 181 VDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEMIQIDTTN 240 Query 240 ILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPEFI 299 ILFI GGAFDGIE++IKRRLG+KVIGF + N+A +++ LL+++ PEDL +GLIPEFI Sbjct 241 ILFILGGAFDGIEEVIKRRLGEKVIGFSS-NEADKYDEQALLAQIRPEDLQAYGLIPEFI 299 Query 300 GRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIER 359 GR+P++A+LE LD AL ILT+PKNALVKQ+ KMLELD+V+LEF EEALS I++KAIER Sbjct 300 GRVPIVANLETLDVTALKNILTQPKNALVKQYTKMLELDDVDLEFTEEALSAISEKAIER 359 Query 360 KTGARGLRSIIEGIMLDVMFELPSRDDIEKCVITGATVTHGEPPRLLLKDGTEVSQDKTS 419 KTGARGLRSIIE ++D+MF++PS +++ K VIT T+ P L +G ++ KTS Sbjct 360 KTGARGLRSIIEESLIDIMFDVPSNENVTKVVITAQTINEETEPELYDAEGNLINNSKTS 419 Query 420 A 420 A Sbjct 420 A 420 > sp|Q8GJP6|CLPX_LACLM ATP-dependent Clp protease ATP-binding subunit ClpX OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=clpX PE=3 SV=1 Length=411 Score = 566 bits (1458), Expect = 0.0, Method: Compositional matrix adjust. Identities = 278/405 (69%), Positives = 346/405 (85%), Gaps = 5/405 (1%) Query 5 NEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKDVPKP 64 N + ++CSFCGK+QD V+K++AG VYIC+ECIEL T I+EEEL E++ E +V P Sbjct 3 NTQNPNIQCSFCGKSQDDVKKMIAGSDVYICNECIELSTRILEEELKEEQDSEMLEVKTP 62 Query 65 QEIREILNEYVIGQDQAKKSLAVAVYNHYKRIN-SNSKV-DDVELSKSNISLIGPTGSGK 122 +E+ + LNEYVIGQ++AK++LAVAVYNHYKRIN + SK+ +D+EL KSNI LIGPTGSGK Sbjct 63 KEMFDHLNEYVIGQEKAKRALAVAVYNHYKRINFTASKIAEDIELQKSNILLIGPTGSGK 122 Query 123 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDE 182 T LAQTLA+ LNVPFAIADATSLTEAGYVGEDVENILLKL+QA+D+++E+AE+GIIYIDE Sbjct 123 TFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLLQASDFNIERAERGIIYIDE 182 Query 183 IDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILF 242 IDK+A+KSEN SITRDVSGEGVQQALLKI+EGTVASVPPQGGRKHP+QE IQIDT NILF Sbjct 183 IDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTKNILF 242 Query 243 ICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKED-LLSKVLPEDLLRFGLIPEFIGR 301 I GGAFDGIE+I+K+RLG+K+IGFGA+NK L ED + +++ ED+ +FGLIPEFIGR Sbjct 243 IVGGAFDGIEEIVKQRLGEKIIGFGANNKK--LSDEDSYMQEIIAEDIQKFGLIPEFIGR 300 Query 302 LPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERKT 361 LP++A+LE+L EE L+ ILT+PKNAL+KQ+K++L DNVELEF++ AL IAKKAIERKT Sbjct 301 LPIVAALERLTEEDLIQILTEPKNALIKQYKQLLLFDNVELEFKDGALMAIAKKAIERKT 360 Query 362 GARGLRSIIEGIMLDVMFELPSRDDIEKCVITGATVTHGEPPRLL 406 GARGLRSIIE +M+D+MFE+PS ++I K +IT A V P ++ Sbjct 361 GARGLRSIIEEVMMDIMFEVPSHEEITKVIITEAVVDGKAEPEMI 405 > tr|B0S2N5|B0S2N5_FINM2 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Finegoldia magna (strain ATCC 29328) GN=clpX PE=3 SV=1 Length=411 Score = 560 bits (1442), Expect = 0.0, Method: Compositional matrix adjust. Identities = 266/402 (66%), Positives = 343/402 (85%), Gaps = 2/402 (0%) Query 9 GQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFK-DVPKPQEI 67 Q KCSFCGK+QD+V+KL+AGPGV+ICDEC+ LC I+EEE + ++ + D+PKP EI Sbjct 6 NQYKCSFCGKSQDEVKKLIAGPGVFICDECVSLCNSIIEEEFKDVDNIQERIDLPKPIEI 65 Query 68 REILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQ 127 +++L++YVI Q++ KK+LAVAVYNHYKRINSN +DVEL KSNI L+GPTGSGKTLLA+ Sbjct 66 KDVLDDYVIKQEEGKKALAVAVYNHYKRINSNLMNNDVELQKSNILLVGPTGSGKTLLAE 125 Query 128 TLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDEIDKVA 187 TLA+IL+VPFAIADATSLTEAGYVGEDVEN++LKLIQAADYD+EKAE+GIIYIDEIDK+ Sbjct 126 TLAKILDVPFAIADATSLTEAGYVGEDVENVILKLIQAADYDIEKAEQGIIYIDEIDKIT 185 Query 188 RKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGA 247 RKSENPSITRDVSGEGVQQALLKI+EGT+ +VPPQGGRKHP+QE+IQ+DT NILFI GGA Sbjct 186 RKSENPSITRDVSGEGVQQALLKIVEGTICNVPPQGGRKHPNQEYIQVDTRNILFIVGGA 245 Query 248 FDGIEQIIKRRLGQKVIGFGADNKAADLEK-EDLLSKVLPEDLLRFGLIPEFIGRLPVIA 306 F+G+E+II+RR K IGFGAD + +K +L PEDL++FGLIPEF+GR+PV+ Sbjct 246 FEGLEKIIERRTETKSIGFGADLGDNEHKKISELFKDFRPEDLIKFGLIPEFVGRIPVLV 305 Query 307 SLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERKTGARGL 366 +L++LDE+AL+ IL +PKNA++KQ++++ ++D+VELEF+E+AL IAK A +RKTGARGL Sbjct 306 TLDELDEQALIRILLEPKNAVIKQYQELFKMDDVELEFDEDALKAIAKLAYDRKTGARGL 365 Query 367 RSIIEGIMLDVMFELPSRDDIEKCVITGATVTHGEPPRLLLK 408 R+IIE ++++MFELPSR DI K ++T +V G+ P+L+ K Sbjct 366 RTIIEKSLMNIMFELPSRQDISKVILTKESVLEGKDPKLVFK 407 > tr|Q5FKR6|Q5FKR6_LACAC ATP-dependent Clp protease ATP-binding subunit ClpX OS=Lactobacillus acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM) GN=clpX PE=3 SV=1 Length=420 Score = 548 bits (1411), Expect = 0.0, Method: Compositional matrix adjust. Identities = 259/404 (64%), Positives = 330/404 (82%), Gaps = 0/404 (0%) Query 10 QLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKDVPKPQEIRE 69 ++KC+FCGKTQDQV+K++AG GVYIC+EC++L +I+++EL + ++PKP EI++ Sbjct 10 EIKCAFCGKTQDQVKKMIAGNGVYICNECVDLAKKIIDDELRADSLKTASELPKPVEIKK 69 Query 70 ILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQTL 129 L++YVIGQD+AKK L+VAVYNHYKRI+ EL KSNI++IGPTGSGKT LAQTL Sbjct 70 QLDQYVIGQDRAKKVLSVAVYNHYKRISQMDVDSSTELQKSNIAMIGPTGSGKTYLAQTL 129 Query 130 ARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDEIDKVARK 189 ARILNVPFAIADAT+LTEAGYVGEDVENILLKL+Q ADYD+E+A++GIIYIDEIDK+++K Sbjct 130 ARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDLERAQRGIIYIDEIDKISKK 189 Query 190 SENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGAFD 249 SEN SITRDVSGEGVQQ+LLKILEGT+ASVPPQGGRKHP QE I++DTTNILFI GGAFD Sbjct 190 SENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQEMIKMDTTNILFIVGGAFD 249 Query 250 GIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPEFIGRLPVIASLE 309 GIEQI+K RLG+K IGFGA+N+ ++ +D + DL++FG+IPEFIGR+P+I +L+ Sbjct 250 GIEQIVKSRLGKKTIGFGAENEVNKVDADDWTRHLTTADLVKFGMIPEFIGRIPIITTLD 309 Query 310 KLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERKTGARGLRSI 369 KLD + LV +LT+PKNALVKQ+KK+L LD VEL+F + AL IA AI+R GARGLR+I Sbjct 310 KLDNKDLVRVLTEPKNALVKQYKKLLSLDGVELKFTDGALKAIADLAIQRNMGARGLRTI 369 Query 370 IEGIMLDVMFELPSRDDIEKCVITGATVTHGEPPRLLLKDGTEV 413 IE ++D+M+E PS +DIE +T +T PR+ K+ EV Sbjct 370 IENSIMDIMYETPSEEDIESVEVTKDVITRHAQPRITRKNAEEV 413 > sp|P63793|CLPX_STRP1 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Streptococcus pyogenes serotype M1 GN=clpX PE=3 SV=1 Length=409 Score = 547 bits (1409), Expect = 0.0, Method: Compositional matrix adjust. Identities = 264/398 (66%), Positives = 332/398 (83%), Gaps = 3/398 (1%) Query 10 QLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKDVPKPQEIRE 69 ++ CSFCGK+QD V+K++AG V+IC+EC+ L EI++EEL E + +VPKP+E+ + Sbjct 10 KVYCSFCGKSQDDVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLTEVPKPKELLD 69 Query 70 ILNEYVIGQDQAKKSLAVAVYNHYKRIN--SNSKVDDVELSKSNISLIGPTGSGKTLLAQ 127 +LN+YV+GQD+AK++L+VAVYNHYKR++ + DDV+L KSNI +IGPTGSGKT LAQ Sbjct 70 VLNQYVVGQDRAKRALSVAVYNHYKRVSFTESRDDDDVDLQKSNILMIGPTGSGKTFLAQ 129 Query 128 TLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDEIDKVA 187 TLA+ LNVPFAIADATSLTEAGYVGEDVENILLKLIQAADY+VE+AE+GIIY+DEIDK+A Sbjct 130 TLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAERGIIYVDEIDKIA 189 Query 188 RKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGA 247 +K EN SITRDVSGEGVQQALLKI+EGTVASVPPQGGRKHP+QE IQIDT NILFI GGA Sbjct 190 KKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTKNILFIVGGA 249 Query 248 FDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPEFIGRLPVIAS 307 FDGIE+I+K+RLG+KVIGFG +++ D + + +++ ED+ +FGLIPEFIGRLPV+A+ Sbjct 250 FDGIEEIVKQRLGEKVIGFGQNSRKID-DNASYMQEIISEDIQKFGLIPEFIGRLPVVAA 308 Query 308 LEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERKTGARGLR 367 LE+L+ L+ ILT+P+NALVKQ++ +L D VEL F++EAL IA KAIERKTGARGLR Sbjct 309 LEQLNTSDLIQILTEPRNALVKQYQALLSYDGVELAFDKEALEAIANKAIERKTGARGLR 368 Query 368 SIIEGIMLDVMFELPSRDDIEKCVITGATVTHGEPPRL 405 SIIE MLD+MFE+PS++D+ K IT A V P L Sbjct 369 SIIEETMLDIMFEIPSQEDVTKVRITKAAVEGKSKPVL 406 > sp|Q5FKD8|HSLU_LACAC ATP-dependent protease ATPase subunit HslU OS=Lactobacillus acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM) GN=hslU PE=3 SV=1 Length=466 Score = 104 bits (259), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 58/142 (41%), Positives = 89/142 (63%), Gaps = 14/142 (10%) Query 64 PQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKT 123 P+EI +ILNEY+IGQD+AKKS+A+A+YN Y+R+ ++ E++ N+ + GPTG GKT Sbjct 6 PKEIVKILNEYIIGQDEAKKSVAIALYNRYRRMQLPKQMQR-EITPKNLLMAGPTGVGKT 64 Query 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDEI 183 +A+ LA I+ PF +AT TE GYVG DVE+++ L+ A + ++E Sbjct 65 EIARRLATIVEAPFVKVEATKFTEVGYVGRDVESMVRDLVGEA-----------VRMEEK 113 Query 184 DKVARKSENPSITRDVSGEGVQ 205 D+ AR P T++ + E V+ Sbjct 114 DQFARVK--PQATKEANKELVR 133 Score = 90.5 bits (223), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 75/239 (31%), Positives = 119/239 (50%), Gaps = 66/239 (28%) Query 167 DYD------VEKAEK-GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASV 219 DYD +E+++ GII+IDEIDK+ + N + +VS EGVQ+ +L I+EG+ + Sbjct 258 DYDTIYQRAIERSQNNGIIFIDEIDKII--AGNKRNSGEVSREGVQRDILPIVEGSTVNT 315 Query 220 PPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKED 279 ++ + T +ILFI GAF A++K +D Sbjct 316 -----------KYGPVSTDHILFIAAGAF-------------------AESKPSD----- 340 Query 280 LLSKVLPEDLLRFGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDN 339 LIPE GR P+ L L ++ V IL P+N+L+KQ+ +L+ D Sbjct 341 --------------LIPELQGRFPIRVELNALTKDDFVKILKDPQNSLLKQYIALLKADG 386 Query 340 VELEFEEEALSEIAKKAIE-----RKTGARGLRSIIEGIMLDVMFELPSRDDIEKCVIT 393 ++L F +EA+ +IA+ A + GAR L +I+E ++ DV++E P D+E IT Sbjct 387 IKLIFTQEAVDKIAEIAFDVNQGTDNIGARRLSTILEKLLEDVLYEGP---DMEMGEIT 442 > sp|P39778|CLPY_BACSU ATP-dependent protease ATPase subunit ClpY OS=Bacillus subtilis (strain 168) GN=clpY PE=1 SV=1 Length=467 Score = 100 bits (248), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 79/230 (34%), Positives = 119/230 (52%), Gaps = 57/230 (25%) Query 170 VEKAEK-GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHP 228 V++AE+ GII+IDEIDK+A K+ S + DVS EGVQ+ +L I+EG+ Sbjct 267 VQRAEESGIIFIDEIDKIA-KNGGASSSADVSREGVQRDILPIVEGSTVVT--------- 316 Query 229 HQEFIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPED 288 ++ + T ++LFI GAF ++K P D Sbjct 317 --KYGSVKTDHVLFIAAGAFH-------------------------------MAK--PSD 341 Query 289 LLRFGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEA 348 L IPE GR P+ L KL + V IL +P NAL+KQ++ +L+ + + LEF +EA Sbjct 342 L-----IPELQGRFPIRVELNKLTVDDFVRILVEPDNALLKQYQALLQTEGISLEFSDEA 396 Query 349 LSEIAKKA--IERKT---GARGLRSIIEGIMLDVMFELPSRDDIEKCVIT 393 + +IA+ A + + T GAR L +I+E ++ D+ FE P +EK IT Sbjct 397 IHKIAEVAYHVNQDTDNIGARRLHTILERLLEDLSFEAPDV-TMEKITIT 445 Score = 90.5 bits (223), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 51/134 (38%), Positives = 86/134 (64%), Gaps = 6/134 (4%) Query 64 PQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKT 123 P++I + L++Y++GQ AKK++AVA+ N Y+R + K+ D E+ NI ++GPTG GKT Sbjct 8 PRQIVDRLDQYIVGQQNAKKAVAVALRNRYRRSLLDEKLKD-EVVPKNILMMGPTGVGKT 66 Query 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDEI 183 +A+ +A++ PF +AT TE GYVG DVE+++ L++ + + K EK ++E+ Sbjct 67 EIARRIAKLSGAPFIKIEATKFTEVGYVGRDVESMVRDLVETS-VRLIKEEK----MNEV 121 Query 184 DKVARKSENPSITR 197 + A ++ N I R Sbjct 122 KEQAEENANKRIVR 135 > sp|A7X1N1|HSLU_STAA1 ATP-dependent protease ATPase subunit HslU OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=hslU PE=3 SV=1 Length=467 Score = 98.6 bits (244), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 72/213 (34%), Positives = 108/213 (51%), Gaps = 56/213 (26%) Query 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235 GII+IDEIDKVA + N +DVS +GVQ+ +L ILEG+V ++ + Sbjct 275 GIIFIDEIDKVATNNHNSG--QDVSRQGVQRDILPILEGSVI-----------QTKYGTV 321 Query 236 DTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLI 295 +T ++LFI GAF +SK P DL I Sbjct 322 NTEHMLFIGAGAFH-------------------------------VSK--PSDL-----I 343 Query 296 PEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKK 355 PE GR P+ L+ L E V ILT+PK +L+KQ++ +L+ + V + F +EA++ +A+ Sbjct 344 PELQGRFPIRVELDSLSVEDFVRILTEPKLSLIKQYEALLQTEEVTVNFTDEAITRLAEI 403 Query 356 AIE-----RKTGARGLRSIIEGIMLDVMFELPS 383 A + GAR L +I+E ++ D+ FE PS Sbjct 404 AYQVNQDTDNIGARRLHTILEKMLEDLSFEAPS 436 Score = 93.2 bits (230), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 48/117 (41%), Positives = 77/117 (66%), Gaps = 5/117 (4%) Query 64 PQEIREILNEYVIGQDQAKKSLAVAVYNHYKR--INSNSKVDDVELSKSNISLIGPTGSG 121 P+EI LNEY++GQ+ AK+ +A+A+ N Y+R ++ SK E+S NI +IGPTG G Sbjct 10 PKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLDEESKQ---EISPKNILMIGPTGVG 66 Query 122 KTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGII 178 KT +A+ +A+++ PF +AT TE GYVG DVE+++ L+ + V+ +K ++ Sbjct 67 KTEIARRMAKVVGAPFIKVEATKFTELGYVGRDVESMVRDLVDVSVRLVKAQKKSLV 123 > sp|Q81WK6|HSLU_BACAN ATP-dependent protease ATPase subunit HslU OS=Bacillus anthracis GN=hslU PE=3 SV=1 Length=463 Score = 97.8 bits (242), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 81/230 (35%), Positives = 115/230 (50%), Gaps = 59/230 (26%) Query 170 VEKAEK-GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHP 228 V +AE+ GII+IDEIDK+A K N + DVS EGVQ+ +L I+EG+ +V + G Sbjct 265 VYRAEQLGIIFIDEIDKIAGKQSN---SVDVSREGVQRDILPIVEGS--NVATKYG---- 315 Query 229 HQEFIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPED 288 + T ILF+ GAF +SK P D Sbjct 316 -----SVKTDYILFVAAGAFH-------------------------------MSK--PSD 337 Query 289 LLRFGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEA 348 L IPE GR P+ L KL + V IL +P NAL+KQ+ +L + +E+EF +EA Sbjct 338 L-----IPELQGRFPIRVELTKLSTDDFVKILIEPDNALIKQYMALLATEGIEIEFSDEA 392 Query 349 LSEIAKKAIE-----RKTGARGLRSIIEGIMLDVMFELPSRDDIEKCVIT 393 + +IA+ A + GAR L +I+E ++ D+ FE S +EK IT Sbjct 393 IRKIAEIAYQVNQDTDNIGARRLHTIMEKLLEDLSFE-ASEITLEKITIT 441 Score = 93.6 bits (231), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 45/103 (44%), Positives = 71/103 (69%), Gaps = 1/103 (1%) Query 64 PQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKT 123 P++I E L++Y+IGQ AKK++AVA+ N Y+R + D E++ NI +IGPTG GKT Sbjct 7 PRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRD-EIAPKNILMIGPTGVGKT 65 Query 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166 +A+ +A+++ PF +AT TE GYVG DVE+++ L++ + Sbjct 66 EVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETS 108 > sp|Q8Y7J8|HSLU_LISMO ATP-dependent protease ATPase subunit HslU OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=hslU PE=3 SV=1 Length=469 Score = 97.8 bits (242), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 86/261 (33%), Positives = 128/261 (49%), Gaps = 61/261 (23%) Query 161 KLIQA---ADYDVEKAEK-GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTV 216 KLI A A + +AE+ G+I+IDEIDK+A K + VS EGVQ+ +L I+EG+ Sbjct 258 KLIDADELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNA--QVSREGVQRDILPIVEGSQ 315 Query 217 ASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLE 276 S ++ ++T ILFI GAF Sbjct 316 IST-----------KYGTVNTEYILFIAAGAFH--------------------------- 337 Query 277 KEDLLSKVLPEDLLRFGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLE 336 +SK P DL IPE GR P+ L+KL +E ILT+P NAL+KQ+K +L+ Sbjct 338 ----MSK--PSDL-----IPELQGRFPIRIELDKLTQEDFYKILTEPDNALIKQYKALLK 386 Query 337 LDNVELEFEEEALSEIAKKAIE-----RKTGARGLRSIIEGIMLDVMFELPSRDDIEKCV 391 + ++L F +EA+ IA+ A + GAR L +I+E ++ D++FE P ++E Sbjct 387 TEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRLHTILEKLLEDLLFEAPE-INMESIK 445 Query 392 ITGATVTHGEPPRLLLKDGTE 412 +T V P + KD T+ Sbjct 446 VTENYVNEKLAPIMQNKDLTQ 466 Score = 96.3 bits (238), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 47/103 (46%), Positives = 73/103 (71%), Gaps = 1/103 (1%) Query 64 PQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKT 123 P++I E L++Y+IGQ+ AKKS+AVA+ N Y+R + + D E+ NI +IGPTG GKT Sbjct 12 PKQIVEKLDQYIIGQNGAKKSVAVALRNRYRRQLMDESIRD-EIIPKNILMIGPTGVGKT 70 Query 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166 +A+ +A+I+ PF+ +AT TE GYVG DVE+++ L++ + Sbjct 71 EIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVS 113 > tr|Q81VV9|Q81VV9_BACAN ATP-dependent Clp protease, ATP-binding subunit ClpC OS=Bacillus anthracis GN=clpC PE=3 SV=1 Length=811 Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 93/334 (28%), Positives = 150/334 (45%), Gaps = 64/334 (19%) Query 70 ILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQTL 129 IL++ VIGQD+A ++A AV + + + D + + +GPTG GKT LA+ L Sbjct 506 ILHDRVIGQDEAVVAVAKAVRR------ARAGLKDPKRPIGSFIFLGPTGVGKTELARAL 559 Query 130 A-----------RILNVPFAIADATSL---TEAGYVGEDVENILLKLIQAADYDVEKAEK 175 A RI + +TS + GYVG + L + ++ Y V Sbjct 560 AESMFGDEDAMIRIDMSEYMEKHSTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSV----- 614 Query 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235 + +DE++K +P + LL++LE + GR + I I Sbjct 615 --VLLDEVEKA-----HPDVF---------NILLQVLED--GRLTDSKGRTVDFRNTIVI 656 Query 236 DTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLI 295 T+N+ GA + +KR K +GF +++ D D+ KV+ E L+ Sbjct 657 MTSNV-----GA-----EALKR---NKHLGFNVQDESRDYS--DMKGKVMDE--LKKAFR 699 Query 296 PEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKK 355 PEF+ R+ I L+++ + I+T N LV + K+ +EL E A+S IA K Sbjct 700 PEFLNRIDEIIVFHMLEKKHIQEIVTLMVNQLVNRLKEQ----EIELHLTEGAISAIADK 755 Query 356 AIERKTGARGLRSIIEGIMLDVMFELPSRDDIEK 389 +R+ GAR LR I+ + D + E + IEK Sbjct 756 GFDREYGARPLRRAIQKHVEDRLSEELLKGAIEK 789 > sp|P37571|CLPC_BACSU Negative regulator of genetic competence ClpC/MecB OS=Bacillus subtilis (strain 168) GN=clpC PE=1 SV=1 Length=810 Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 76/290 (26%), Positives = 130/290 (45%), Gaps = 58/290 (20%) Query 114 LIGPTGSGKTLLAQTLA-----------RILNVPFAIADATSL---TEAGYVGEDVENIL 159 +GPTG GKT LA+ LA RI + +TS + GYVG D L Sbjct 543 FLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSRLVGSPPGYVGYDEGGQL 602 Query 160 LKLIQAADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASV 219 + ++ Y V + +DEI+K +P + LL++LE + Sbjct 603 TEKVRRKPYSV-------VLLDEIEKA-----HPDVF---------NILLQVLED--GRL 639 Query 220 PPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKED 279 GR + I I T+N+ GA + +KR K +GF ++ + +D Sbjct 640 TDSKGRTVDFRNTILIMTSNV-----GASE-----LKR---NKYVGFNVQDETQN--HKD 684 Query 280 LLSKVLPEDLLRFGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDN 339 + KV+ E L+ PEFI R+ I L+++ L I++ + L K+ K+ + Sbjct 685 MKDKVMGE--LKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQ----D 738 Query 340 VELEFEEEALSEIAKKAIERKTGARGLRSIIEGIMLDVMFELPSRDDIEK 389 + +E + A +++A++ ++ + GAR LR I+ + D + E R +I K Sbjct 739 LSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIHK 788 > tr|A7X6Q9|A7X6Q9_STAA1 ATP-dependent Clp proteinase chain OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=clpL PE=4 SV=1 Length=701 Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 82/333 (25%), Positives = 142/333 (43%), Gaps = 83/333 (25%) Query 55 EVEFKDVPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISL 114 +++ D+ + + I L +IGQDQA + ++ A+ + + DD + Sbjct 402 QMDDNDIERLKNISNRLRSKIIGQDQAVEMVSRAIRRN------RAGFDDGNRPIGSFLF 455 Query 115 IGPTGSGKTLLAQTLA--------RILNVPFA-IADATSL-----TEAGYVG-EDVENIL 159 +GPTG GKT LA+ LA ++ + + +D T++ T AGYVG +D N L Sbjct 456 VGPTGVGKTELAKQLAIDLFGNKDALIRLDMSEYSDTTAVSKMIGTTAGYVGYDDNSNTL 515 Query 160 LKLIQAADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKIL-EGTVAS 218 + ++ Y V I DEI+K NP I LL+++ +G + Sbjct 516 TEKVRRNPYSV-------ILFDEIEKA-----NPQIL---------TLLLQVMDDGNLTD 554 Query 219 VPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKE 278 QG I+ N + IC GFG N D E++ Sbjct 555 --GQGN---------VINFKNTIIICTSN----------------AGFGNGN---DAEEK 584 Query 279 DLLSKVLPEDLLRFGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELD 338 D++ ++ +F PEF+ R I LD++AL I+ N L+ + L+ Sbjct 585 DIM-----HEMKKF-FRPEFLNRFNGIVEFLHLDKDALQDIV----NLLLDDVQVTLDKK 634 Query 339 NVELEFEEEALSEIAKKAIERKTGARGLRSIIE 371 + ++ ++A + ++ + + GAR LR I+E Sbjct 635 GITMDVSQDAKDWLIEEGYDEELGARPLRRIVE 667 > sp|O31673|CLPE_BACSU ATP-dependent Clp protease ATP-binding subunit ClpE OS=Bacillus subtilis (strain 168) GN=clpE PE=1 SV=1 Length=699 Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 92/360 (26%), Positives = 150/360 (42%), Gaps = 77/360 (21%) Query 40 ELCTEIVEEELGTE-EEVEFKDVPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINS 98 E EIVE++ G +++ + K +E+ L+E VIGQ+ A + +A AV + S Sbjct 375 EHIQEIVEQKTGIPVGKLQADEQTKMKELEAKLHERVIGQEAAVQKVAKAVRRSRAGLKS 434 Query 99 NSKVDDVELSKSNISLIGPTGSGKTLLAQTLARILNVPFAIADAT---SLTE-------- 147 ++ + +GPTG GKT L++TLA L F DA ++E Sbjct 435 KNR------PVGSFLFVGPTGVGKTELSKTLADEL---FGTKDAIIRLDMSEYMEKHAVS 485 Query 148 ------AGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSG 201 GYVG + L + ++ Y I+ +DEI+K +P Sbjct 486 KIIGSPPGYVGHEEAGQLTEKVRRNPY-------SIVLLDEIEKA-----HPD------- 526 Query 202 EGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEQIIKRRLGQ 261 VQ L+I+E + GR ++ + I T+N GA + Q Sbjct 527 --VQHMFLQIMED--GRLTDSQGRTVSFKDTVIIMTSN-----AGAGE----------KQ 567 Query 262 KVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPEFIGRLPVIASLEKLDEEALVAILT 321 +GF +D+ +E++ L+ D L PEF+ R I L++E LV I++ Sbjct 568 TKVGFQSDDSV--IEEQTLI------DSLSMFFKPEFLNRFDSIIEFRSLEKEHLVKIVS 619 Query 322 KPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERKTGARGLRSIIEGIMLDVMFEL 381 L + + + L +EA +IA+ GAR LR I+ + D M +L Sbjct 620 LLLGELEETLAER----GISLNVTDEAKEKIAELGYHPSFGARPLRRTIQEWVEDEMTDL 675 > tr|A2RIW9|A2RIW9_LACLM ATP-dependent Clp protease ATP-binding subunit OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=clpC PE=3 SV=1 Length=816 Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 85/327 (26%), Positives = 142/327 (43%), Gaps = 70/327 (21%) Query 71 LNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQTLA 130 L++ V+GQ++A +++ A+ + S V D + +GPTG GKT LA+ LA Sbjct 515 LHKRVVGQEEAISAVSRAIRR------ARSGVADSRRPMGSFMFLGPTGVGKTELAKALA 568 Query 131 -----------RILNVPFAIADATSL---TEAGYVGEDVENILLKLIQAADYDVEKAEKG 176 R+ F +TS GYVG D L + ++ Y V Sbjct 569 DSVFGSEDNMIRVDMSEFMEKHSTSRLIGAPPGYVGYDEGGQLTERVRNKPYSV------ 622 Query 177 IIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQID 236 + +DE++K + V +L+IL+ V GRK + I I Sbjct 623 -VLLDEVEK--------------AHLDVFNIMLQILDDGF--VTDTKGRKVDFRNTIIIM 665 Query 237 TTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIP 296 T+N+ GA K +GFGA N AD + S++L E L+ P Sbjct 666 TSNL-----GA--------TALRDDKTVGFGAKNITADYSA--MQSRILEE--LKRHYRP 708 Query 297 EFIGRLP---VIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIA 353 EF+ R+ V SLE + E +V I++K +L+K+ + ++ ++ A+ IA Sbjct 709 EFLNRIDENIVFHSLESQEIEQIVKIMSK---SLIKRLAE----QDIHVKLTPSAIKLIA 761 Query 354 KKAIERKTGARGLRSIIEGIMLDVMFE 380 + + + GAR LR ++ + D++ E Sbjct 762 EVGFDPEYGARPLRKALQKEVEDLLSE 788 > tr|A7WYU0|A7WYU0_STAA1 Endopeptidase OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=clpC PE=3 SV=1 Length=818 Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 85/329 (26%), Positives = 136/329 (41%), Gaps = 64/329 (19%) Query 67 IREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLA 126 + + L+E VIGQ A S++ AV + + + D + + +GPTG GKT LA Sbjct 502 LEDTLHERVIGQKDAVNSISKAVRR------ARAGLKDPKRPIGSFIFLGPTGVGKTELA 555 Query 127 QTLA-----------RILNVPFAIADATSL---TEAGYVGEDVENILLKLIQAADYDVEK 172 + LA R+ F A S GYVG D L + ++ Y V Sbjct 556 RALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSV-- 613 Query 173 AEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEF 232 I DEI+K +P V LL++L+ + GR + Sbjct 614 -----ILFDEIEKA-----HPD---------VFNILLQVLDD--GHLTDTKGRTVDFRNT 652 Query 233 IQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRF 292 I I T+N+ G +++ +R GFG + D E + +L E L+ Sbjct 653 IIIMTSNV---------GAQELQDQRFA----GFGGSSDGQDYET--IRKTMLKE--LKN 695 Query 293 GLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEI 352 PEF+ R+ I KL +E L I+T +V + L N+ + ++A +I Sbjct 696 SFRPEFLNRVDDIIVFHKLTKEELKEIVT----MMVNKLTNRLSEQNINIIVTDKAKDKI 751 Query 353 AKKAIERKTGARGLRSIIEGIMLDVMFEL 381 A++ + + GAR L I+ + D + EL Sbjct 752 AEEGYDPEYGARPLIRAIQKTIEDNLSEL 780 > tr|Q8Y8B1|Q8Y8B1_LISMO ATP-dependent protease OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=clpE PE=3 SV=1 Length=724 Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 81/321 (25%), Positives = 132/321 (41%), Gaps = 74/321 (23%) Query 75 VIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQTLARILN 134 VIGQ+ A K +A A+ R+ SK + + +GPTG GKT L +TLAR L Sbjct 430 VIGQEDAVKKVAKAI--RRSRVGLKSKNRPI----GSFLFVGPTGVGKTELGRTLAREL- 482 Query 135 VPFAIADAT---SLTE--------------AGYVGEDVENILLKLIQAADYDVEKAEKGI 177 F ++A ++E GYVG + L + ++ Y I Sbjct 483 --FGTSEAMIRLDMSEFMEKHSISKLIGSPPGYVGHEEAGQLTEKVRRNPY-------SI 533 Query 178 IYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDT 237 I +DEI+K +P VQ L+ILE + GR ++ + I T Sbjct 534 ILLDEIEKA-----HPD---------VQHMFLQILED--GRLTDSQGRTVSFKDTVIIMT 577 Query 238 TNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPE 297 +N GA D + +GF + + D+L+K L PE Sbjct 578 SN-----AGATD----------TEASVGFNTTTETKLEKGSDILAK------LGAYFKPE 616 Query 298 FIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAI 357 F+ RL + + L+++ LV I+ + ++ +ML + V ++ +E + Sbjct 617 FLNRLDSVIEFKSLEKDDLVQII----DLMLVDLNEMLAQEGVTIDVSKEVKEHLIDLGY 672 Query 358 ERKTGARGLRSIIEGIMLDVM 378 + K GAR LR I+ + D + Sbjct 673 DPKFGARPLRRTIQEHLEDTI 693 > tr|Q8YAB6|Q8YAB6_LISMO Endopeptidase Clp ATP-binding chain C OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=clpC PE=3 SV=1 Length=820 Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 87/339 (26%), Positives = 148/339 (44%), Gaps = 70/339 (21%) Query 67 IREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLA 126 + ++L+E VIGQD A K++++AV + + + D + + +GPTG GKT LA Sbjct 501 MEKLLHERVIGQDAAVKAVSLAVRR------ARAGLKDPKRPIGSFIFLGPTGVGKTELA 554 Query 127 QTLARILNVPFAIADAT---SLTE--------------AGYVGEDVENILLKLIQAADYD 169 + LA + F D+ ++E GYVG + L + ++ Y Sbjct 555 RALAESM---FGDEDSMIRIDMSEYMEKFSTARLVGAPPGYVGYEEGGQLTEKVRQKPYS 611 Query 170 VEKAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPH 229 V + +DEI+K +P + LL++L+ + GR Sbjct 612 V-------VLLDEIEKA-----HPDVF---------NMLLQVLDD--GRLTDSKGRVVDF 648 Query 230 QEFIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDL 289 + + I T+NI GA Q +K+ K +GF + D + + +VL + Sbjct 649 RNTVIIMTSNI-----GA-----QEMKQ---DKSMGFNVTDPLKD--HKAMEHRVLQD-- 691 Query 290 LRFGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEAL 349 L+ PEFI R+ L E+ L I+T L Q K L ++ ++ E A Sbjct 692 LKQAFRPEFINRIDETIVFHSLQEKELKQIVT----LLTAQLTKRLAERDIHVKLTEGAK 747 Query 350 SEIAKKAIERKTGARGLRSIIEGIMLDVMFELPSRDDIE 388 S+IAK + + GAR L+ I+ + D++ E R +I+ Sbjct 748 SKIAKDGYDPEYGARPLKRAIQKEVEDMLSEELLRGNIK 786 > tr|B0S3X9|B0S3X9_FINM2 ATP-dependent protease Clp ATP-binding subunit ClpC OS=Finegoldia magna (strain ATCC 29328) GN=FMG_0335 PE=3 SV=1 Length=806 Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 85/320 (27%), Positives = 138/320 (43%), Gaps = 74/320 (23%) Query 71 LNEYVIGQDQAKKSLAVAVYNHYKRI-----NSNSKVDDVELSKSNISLIGPTGSGKTLL 125 L + VIGQD+A S++ A+ KR N N + + +GPTG GKT L Sbjct 495 LKKVVIGQDKAIDSISNAI----KRARVGLKNPNKPI-------GSFVFVGPTGVGKTYL 543 Query 126 AQTLAR-ILNVPFAI--ADATSLTEA-----------GYVGEDVENILLKLIQAADYDVE 171 A+ LA+ + N A+ D T E GYVG D L +++ Y V Sbjct 544 AKKLAKELFNDENAMIRIDMTEYMEKHSVSKLIGSPPGYVGHDDGGQLTDMVRTKPYSV- 602 Query 172 KAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQE 231 I DEI+K +P V LL++L+ + GR ++ Sbjct 603 ------ILFDEIEKA-----HPD---------VFNTLLQVLDD--GRLTDSKGRVVNFKD 640 Query 232 FIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDL-LSKVLPEDLL 290 + I T+NI GA + +E + VIGF N A D+E ++ +K + + Sbjct 641 TVIIMTSNI-----GASE-LE-------SKNVIGF---NTAEDVEVDEYNRNKETINNAM 684 Query 291 RFGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALS 350 + PEF+ RL + L++E + I + LV + K +++ + ++E+ L Sbjct 685 KSMFKPEFMNRLDDVIVFSNLNKENVKEIAGLMMDELVDRMAK----NDLIISYDEKILD 740 Query 351 EIAKKAIERKTGARGLRSII 370 + K ++K GAR L +I Sbjct 741 YLVDKGYDKKFGARPLERLI 760 > tr|B0S0E3|B0S0E3_FINM2 ATP-dependent zinc metalloprotease FtsH OS=Finegoldia magna (strain ATCC 29328) GN=ftsH PE=3 SV=1 Length=628 Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/142 (34%), Positives = 69/142 (49%), Gaps = 13/142 (9%) Query 75 VIGQDQAKKSL--AVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQTLARI 132 V GQ++AK +L V + KR N V L K + L+GP G+GKTLLAQ +A Sbjct 165 VAGQEEAKDALLEVVDFLHDPKRYNEIGAV----LPKG-VLLVGPPGTGKTLLAQAVAGE 219 Query 133 LNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDEIDKVARKSEN 192 VPF + E +VG + QAAD KA I++IDEID + ++ + Sbjct 220 AKVPFFSMSGSEFVEM-FVGLGASKVRDLFKQAAD----KA-PCIVFIDEIDAIGKRRDT 273 Query 193 PSITRDVSGEGVQQALLKILEG 214 I+ + E LL ++G Sbjct 274 AGISGNDEREQTLNQLLNEMDG 295 > tr|Q5FM98|Q5FM98_LACAC ATPase OS=Lactobacillus acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM) GN=clpC PE=3 SV=1 Length=825 Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 79/327 (24%), Positives = 143/327 (44%), Gaps = 67/327 (20%) Query 70 ILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQTL 129 IL++ VIGQD+A ++A A+ S S + D + +GPTG GKT LA+++ Sbjct 515 ILHKRVIGQDKAVSAVARAIRR------SRSGIKDERRPIGSFLFLGPTGVGKTELAKSV 568 Query 130 A--------RILNVPFA-----IADATSLTEA-GYVGEDVENILLKLIQAADYDVEKAEK 175 A ++ + + IA + + A GYVG + L + ++ Y V Sbjct 569 AAAMFGSEDNLIRLDMSEYMDQIASSKLIGSAPGYVGYEEGGQLSEQVRRHPYSV----- 623 Query 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKIL-EGTVASVPPQGGRKHPHQEFIQ 234 + +DE++K +P + LL++L EG + GRK + I Sbjct 624 --VLLDEVEKA-----HPDVF---------NLLLQVLDEGFMTD---SKGRKVDFRNTII 664 Query 235 IDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGL 294 I T+N+ FDG +GF AD +++ + + + + +F Sbjct 665 IMTSNLG--SRSLFDG-----------NAVGFNADK----IDQAKVRQAKVQQAIKQF-F 706 Query 295 IPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAK 354 PEF+ R+ ++L ++ L I++ N LV + L+ + L+ AL +I + Sbjct 707 RPEFLNRIDETIVFDELTKKQLRNIVSLLTNKLVVR----LQRKGITLKLSRAALDKIVQ 762 Query 355 KAIERKTGARGLRSIIEGIMLDVMFEL 381 + + GAR L+ I+ + D + E+ Sbjct 763 DGYDPENGARPLKRAIQNDVEDKVAEM 789 > tr|Q99XR9|Q99XR9_STRP1 Negative regulator of genetic competence OS=Streptococcus pyogenes serotype M1 GN=clpC PE=3 SV=1 Length=814 Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 82/328 (25%), Positives = 137/328 (42%), Gaps = 70/328 (21%) Query 71 LNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQTLA 130 L++ VIGQD A +++ A+ + I + + + +GPTG GKT LA+ LA Sbjct 514 LHKRVIGQDAAVTAISRAIRRNQSGIRTGKR------PIGSFMFLGPTGVGKTELAKALA 567 Query 131 RILN------VPFAIAD------ATSLTEA--GYVGEDVENILLKLIQAADYDVEKAEKG 176 +L + F +++ A+ L A GYVG D L + ++ Y V Sbjct 568 EVLFDDEAALIRFDMSEYMEKFAASRLNGAPPGYVGYDEGGELTQKVRNKPYSV------ 621 Query 177 IIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQID 236 + DE++K +P I LL++L+ + + GRK I I Sbjct 622 -LLFDEVEKA-----HPDIF---------NVLLQVLDDGI--LTDSRGRKVDFSNTIIIM 664 Query 237 TTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIP 296 T+N+ GA K +GFG + D + + ++L E LR P Sbjct 665 TSNL-----GA--------TALRDDKTVGFGVKDIHQD--HQAMEKRILEE--LRKTYRP 707 Query 297 EFIGRLP---VIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIA 353 EFI R+ V SL + + +V I+ +P L + L+ + AL ++ Sbjct 708 EFINRIDEKVVFHSLTQDNMRDVVKIMVQP-------LITTLAEKGITLKIQPLALKHLS 760 Query 354 KKAIERKTGARGLRSIIEGIMLDVMFEL 381 + + GAR LR ++ + D + EL Sbjct 761 EVGYDEHMGARPLRRTLQTEIEDKLSEL 788 > tr|Q5FHW6|Q5FHW6_LACAC ATP-dependent protease OS=Lactobacillus acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM) GN=clpE PE=4 SV=1 Length=709 Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 87/349 (25%), Positives = 142/349 (41%), Gaps = 83/349 (24%) Query 37 ECIELCTEIVEEELGTEEEVEFKDVPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRI 96 + IE T+I EL +E + D+ K L + VI QD+A + A+ K+I Sbjct 370 QIIEQKTKIPMSELHADEAQKNLDLAKK------LKKNVIDQDRAIDVITDAIAR--KQI 421 Query 97 NSNSKVDDVELSKSNISLIGPTGSGKTLLAQTLA--------RILNVPFA-IADATSLTE 147 D + + L GPTG GKT LA+ LA ++ + + D ++ + Sbjct 422 -----FKDSDRPTGSFLLTGPTGVGKTELAKQLAIQLFGNKEHLIRLDMSEYQDEMAVNK 476 Query 148 -----AGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSGE 202 GYVG L + ++ Y +I DEI+K NP + Sbjct 477 LIGSAPGYVGYGEGGQLTEKVRHQPY-------SLILFDEIEKA-----NPQVF------ 518 Query 203 GVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEQIIKRRLGQK 262 ALL+I++ + GR ++ I I T+N F DG Sbjct 519 ---NALLQIMDD--GRLTDAQGRTVSFKDTILIMTSNAGFSDKLLEDG------------ 561 Query 263 VIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPEFIGRLPVIASLEKLDEEALVAILTK 322 ++++ L+S + E+ R PEF+ RL I L E+ + I+ Sbjct 562 -----------KVDQDKLISAL--ENYFR----PEFLNRLDAIVPFNSLTEQDMGKII-- 602 Query 323 PKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERKTGARGLRSIIE 371 N +K+ +L V +E +EA +A+K ++K GAR LR ++E Sbjct 603 --NIYLKKMSHVLAKKGVTVEVSDEAKEFLAEKGYDKKFGARPLRRVVE 649 > tr|Q9A200|Q9A200_STRP1 ATP-dependent zinc metalloprotease FtsH OS=Streptococcus pyogenes serotype M1 GN=ftsH PE=3 SV=1 Length=659 Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/77 (38%), Positives = 43/77 (56%), Gaps = 6/77 (8%) Query 110 SNISLIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYD 169 + + L GP G+GKTLLA+ +A VPF + E +VG + +++ D Sbjct 221 AGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG-----VGASRVRSLFED 274 Query 170 VEKAEKGIIYIDEIDKV 186 +KAE+ II+IDEID V Sbjct 275 AKKAERAIIFIDEIDAV 291 > tr|B0S3J0|B0S3J0_FINM2 ATP-dependent protease Clp ATP-binding subunit OS=Finegoldia magna (strain ATCC 29328) GN=FMG_1512 PE=3 SV=1 Length=861 Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 80/318 (25%), Positives = 128/318 (40%), Gaps = 70/318 (22%) Query 69 EILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQT 128 ++L++ V+GQD+A ++ A+ I + S + + + +GPTG GKT LA+ Sbjct 565 KLLHKRVVGQDEAVTAVTDAI------IRARSGLKSLNRPIGSFIFLGPTGVGKTELAKA 618 Query 129 LA-----------RILNVPFAIADATSL---TEAGYVGEDVENILLKLIQAADYDVEKAE 174 L RI + A S GYVG D L + ++ Y V Sbjct 619 LTENMFDDEKNLIRIDMSEYMEKHAVSRLVGAPPGYVGYDEGGQLTEAVRRKPYSV---- 674 Query 175 KGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQ 234 I DEI+K +P V LL++L+ + GR + I Sbjct 675 ---ILFDEIEKA-----HPD---------VFNILLQVLDD--GRLTDNKGRTVDFKNTII 715 Query 235 IDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGL 294 I T+NI G+ D IE G + +D + ++ D L+ Sbjct 716 IMTSNI-----GSMDLIE------------GIDDNGNISDESRNSVM------DELKSRF 752 Query 295 IPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAK 354 PEF+ R+ I + L ++ + I+ K + L KQ LE + +E +E A I Sbjct 753 KPEFLNRIDDIVMFKPLTKDDIYKIIEKQVSLLQKQ----LEDRQITIEIDESAEDLIID 808 Query 355 KAIERKTGARGLRSIIEG 372 KA + GAR ++ IE Sbjct 809 KAYDVLYGARPVKRFIES 826 > tr|A7X289|A7X289_STAA1 Uncharacterized protein OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=SAHV_1397 PE=4 SV=1 Length=263 Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 53/162 (33%), Positives = 77/162 (48%), Gaps = 44/162 (27%) Query 92 HYKRINSNSKVDD-----VELSKSNISLIGPTGSGKTLLAQTLARILNVPFAIADATSLT 146 HYK NS+S V + +L+K NI L GPTGSGKT LA+TL+ +++ P + + Sbjct 5 HYK--NSDSTVFNDAKALFDLNK-NILLKGPTGSGKTKLAETLSEVVDTPMHQVNCS--- 58 Query 147 EAGYVGEDVENIL-LKLIQA----------ADYDVEKA--EKGIIYIDEIDKVARKSENP 193 V D E++L K I+ D V KA E I+YIDEI+ +A+ P Sbjct 59 ----VDLDTESLLGFKTIKTNAEGQQEIVFVDGPVIKAMKEGHILYIDEIN-MAKPETLP 113 Query 194 ----------SITRDVSGEGVQ-----QALLKILEGTVASVP 220 IT +GE ++ + I EG V ++P Sbjct 114 VLNGVLDYRRQITNPYTGEVIKAVPGFNVIAAINEGYVGTLP 155 > tr|Q81VX5|Q81VX5_BACAN ATP-dependent zinc metalloprotease FtsH OS=Bacillus anthracis GN=ftsH PE=3 SV=1 Length=633 Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 40/76 (53%), Gaps = 6/76 (8%) Query 114 LIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKA 173 L+GP G+GKTLLA+ +A VPF + E +VG + L + A +K Sbjct 200 LVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENA----KKN 253 Query 174 EKGIIYIDEIDKVARK 189 II+IDEID V R+ Sbjct 254 APCIIFIDEIDAVGRQ 269 > tr|Q8YAC6|Q8YAC6_LISMO ATP-dependent zinc metalloprotease FtsH OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=ftsH PE=3 SV=1 Length=691 Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 40/76 (53%), Gaps = 6/76 (8%) Query 114 LIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKA 173 L+GP G+GKTLLA+ +A VPF + E +VG + L + A +K Sbjct 218 LVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENA----KKN 271 Query 174 EKGIIYIDEIDKVARK 189 II+IDEID V R+ Sbjct 272 APCIIFIDEIDAVGRQ 287 > sp|Q8Y6Z8|RUVB_LISMO Holliday junction ATP-dependent DNA helicase RuvB OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=ruvB PE=3 SV=1 Length=335 Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 65/148 (44%), Gaps = 31/148 (21%) Query 45 IVEEELGTEEEVEFKDVPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDD 104 I+ E EEV F+ +PQ L++Y IGQD+ K +L V + R N +D Sbjct 5 IISSETVDAEEVSFETSLRPQN----LSQY-IGQDKVKNNLTVFIEAATLR---NEALD- 55 Query 105 VELSKSNISLIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQ 164 ++ L GP G GKT LA +A + ++ G D+ IL L Sbjct 56 ------HVLLYGPPGLGKTTLAMVIASEMGSQIKTTSGPAIERPG----DLATILTSL-- 103 Query 165 AADYDVEKAEKG-IIYIDEIDKVARKSE 191 E G +++IDEI +++R E Sbjct 104 ---------EPGDVLFIDEIHRLSRAIE 122 > tr|Q5FMA3|Q5FMA3_LACAC ATP-dependent zinc metalloprotease FtsH OS=Lactobacillus acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM) GN=ftsH PE=3 SV=1 Length=718 Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 40/77 (52%), Gaps = 6/77 (8%) Query 110 SNISLIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYD 169 S + L GP G+GKTLLA+ +A NVPF + E +VG + ++ + Sbjct 227 SGVLLEGPPGTGKTLLARAVAGEANVPFYSISGSDFVEM-FVG-----VGASRVRDLFSN 280 Query 170 VEKAEKGIIYIDEIDKV 186 +K II+IDEID + Sbjct 281 AKKNAPSIIFIDEIDAI 297 > tr|Q5FLA7|Q5FLA7_LACAC ATP-dependent Clp protease, ATP-binding subunit OS=Lactobacillus acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM) GN=clpE PE=3 SV=1 Length=728 Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 80/350 (23%), Positives = 148/350 (42%), Gaps = 77/350 (22%) Query 40 ELCTEIVEEELGTE-EEVEFKDVPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINS 98 ++ +IVEE+ G +++ ++ + Q + L VIGQD+A + +A A+ + RI Sbjct 401 KIMNKIVEEKTGIPVGDIQKQEENQLQNLASDLKSNVIGQDKAVEKVARAIRRN--RIGF 458 Query 99 NSKVDDVELSKSNISLIGPTGSGKTLLAQTLARILNVPFAIADAT---SLTE-------- 147 N + + +GPTG GKT LA+ LA+ + F DA ++E Sbjct 459 NKSGRPI----GSFLFVGPTGVGKTELAKQLAKQM---FGSEDAMIRFDMSEYMEQYSVS 511 Query 148 ------AGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSG 201 GYVG + L + ++ Y +I +DEI+K +P + Sbjct 512 KLIGSAPGYVGYEEAGQLTEQVRHNPY-------SLILLDEIEKA-----HPDVL----- 554 Query 202 EGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEQIIKRRLGQ 261 L+IL+ + GR ++ I I T+N A GI+ Sbjct 555 ----NLFLQILDD--GRLTDSQGRTVSFKDTIIIMTSN-------AGQGIK--------N 593 Query 262 KVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPEFIGRLPVIASLEKLDEEALVAILT 321 +GF A+N +D S+ ++ +F PEF+ RL + +L + L+ I+ Sbjct 594 ASVGFTAEN-------DDESSESARNNMSQF-FKPEFLNRLDDVIEFNELTKPDLLEIV- 644 Query 322 KPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERKTGARGLRSIIE 371 + +++ M++ + ++ A +++ ++ GAR LR I+ Sbjct 645 ---DLMLQNTNNMVKDQGLHIDVTSAAKNKLVEEGFNPALGARPLRRTIQ 691 > tr|B0S222|B0S222_FINM2 ATP-dependent zinc metalloprotease FtsH OS=Finegoldia magna (strain ATCC 29328) GN=ftsH PE=3 SV=1 Length=631 Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 28/76 (37%), Positives = 38/76 (50%), Gaps = 6/76 (8%) Query 114 LIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKA 173 L+GP G+GKT L++ +A VPF + E +VG + QA +K Sbjct 201 LVGPPGTGKTYLSRAVAGEAKVPFFSISGSDFVEM-FVGVGASRVRDLFEQA-----KKN 254 Query 174 EKGIIYIDEIDKVARK 189 II+IDEID V RK Sbjct 255 APCIIFIDEIDAVGRK 270 > tr|A2RH93|A2RH93_LACLM ATP-dependent zinc metalloprotease FtsH OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=ftsH PE=3 SV=1 Length=695 Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 6/80 (8%) Query 110 SNISLIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYD 169 + + L GP G+GKTLLA+ +A VPF + E +VG + L + A Sbjct 227 AGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASRV-RDLFENA--- 281 Query 170 VEKAEKGIIYIDEIDKVARK 189 +K II+IDEID V R+ Sbjct 282 -KKTAPSIIFIDEIDAVGRQ 300 Lambda K H a alpha 0.315 0.136 0.374 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 1427331832 Database: my_bacs.fasta Posted date: Mar 12, 2015 11:28 PM Number of letters in database: 6,601,678 Number of sequences in database: 22,502 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40