RID: B0ENEPVP014 Job Title:R1AB_CVHSA P0C6X7 Helicase (Hel) (3.6.4.12)... Program: BLASTP Query: R1AB_CVHSA P0C6X7 Helicase (Hel) (3.6.4.12) (3.6.4.13) (nsp13) ID: lcl|Query_66872(amino acid) Length: 601 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Max Total Query E Per. Description Score Score cover Value Ident Accession RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 1259 1259 100% 0.0 100.00 P0C6X7.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 1256 1256 100% 0.0 99.50 P0C6W6.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 1252 1252 100% 0.0 99.50 P0C6V9.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 1249 1249 100% 0.0 99.00 P0C6W2.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 973 973 98% 0.0 75.00 P0C6W5.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 924 924 98% 0.0 72.13 P0C6W4.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 922 922 98% 0.0 72.13 K9N7C7.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 918 918 98% 0.0 71.28 P0C6W1.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 916 916 98% 0.0 71.28 P0C6W3.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 878 878 98% 0.0 68.62 P0C6W9.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 877 877 98% 0.0 68.62 P0C6X0.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 877 877 98% 0.0 68.62 P0C6W8.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 877 877 98% 0.0 68.62 P0C6W7.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 875 875 98% 0.0 68.46 P0C6X6.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 866 866 100% 0.0 67.33 P0C6X9.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 865 865 100% 0.0 67.16 P0C6X8.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 847 847 100% 0.0 66.33 P0C6Y0.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 845 845 99% 0.0 65.73 P0C6X3.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 845 845 99% 0.0 65.45 P0C6X2.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 845 845 99% 0.0 65.45 P0C6X4.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 786 786 98% 0.0 61.99 P0C6Y5.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 781 781 98% 0.0 61.66 Q98VG9.2 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 767 767 100% 0.0 60.80 P0C6X5.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 766 766 99% 0.0 60.77 P0C6W0.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 762 762 98% 0.0 62.06 P0C6Y4.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 761 761 98% 0.0 60.20 P0C6X1.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 742 742 99% 0.0 58.54 P0C6Y3.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 740 740 98% 0.0 58.85 P0C6Y1.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 740 740 98% 0.0 58.85 P0C6Y2.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 51.6 51.6 28% 9e-07 27.27 P0C6V8.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 50.4 50.4 49% 2e-06 21.85 Q008X6.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 45.4 45.4 28% 7e-05 26.14 P0C6V7.1 RecName: Full=Replication protein E1; AltName:... 32.7 32.7 7% 0.38 36.17 Q82007.1 RecName: Full=Replication protein E1; AltName:... 32.3 32.3 7% 0.63 34.04 P50765.1 RecName: Full=Replication protein E1; AltName:... 32.0 32.0 7% 0.83 35.56 P36725.1 RecName: Full=Replication protein E1; AltName:... 30.4 30.4 7% 2.3 34.04 Q81020.1 RecName: Full=Replication protein E1; AltName:... 30.0 30.0 7% 2.8 35.56 P24829.1 RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab... 29.6 29.6 51% 4.6 22.93 Q8B912.3 RecName: Full=Uncharacterized protein R530 [Acanthamoeba... 28.9 28.9 7% 6.7 34.78 Q5UQ92.1 RecName: Full=Replication protein E1; AltName:... 28.5 28.5 7% 8.2 34.04 P22154.1 RecName: Full=Replication protein E1; AltName:... 28.5 28.5 7% 9.8 35.56 P26544.1 RecName: Full=Replication protein E1; AltName:... 28.5 28.5 4% 9.9 44.00 P36722.1 Alignments: >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; AltName: Full=SARS coronavirus main proteinase; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Severe acute respiratory syndrome-related coronavirus] Sequence ID: P0C6X7.1 Length: 7073 Range 1: 5302 to 5902 Score:1259 bits(3257), Expect:0.0, Method:Compositional matrix adjust., Identities:601/601(100%), Positives:601/601(100%), Gaps:0/601(0%) Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV Sbjct 5302 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 5361 Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY Sbjct 5362 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 5421 Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY Sbjct 5422 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 5481 Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL Sbjct 5482 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 5541 Query 241 VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP 300 VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP Sbjct 5542 VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP 5601 Query 301 SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV 360 SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV Sbjct 5602 SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV 5661 Query 361 NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE 420 NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE Sbjct 5662 NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE 5721 Query 421 YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVI 480 YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVI Sbjct 5722 YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVI 5781 Query 481 THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE 540 THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE Sbjct 5782 THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE 5841 Query 541 YDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIMSDRDLYDKLQFTSLEIPRRNVATL 600 YDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIMSDRDLYDKLQFTSLEIPRRNVATL Sbjct 5842 YDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIMSDRDLYDKLQFTSLEIPRRNVATL 5901 Query 601 Q 601 Q Sbjct 5902 Q 5902 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bat SARS CoV Rp3/2004] Sequence ID: P0C6W6.1 Length: 7071 Range 1: 5300 to 5900 Score:1256 bits(3249), Expect:0.0, Method:Compositional matrix adjust., Identities:598/601(99%), Positives:601/601(100%), Gaps:0/601(0%) Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV Sbjct 5300 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 5359 Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY Sbjct 5360 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 5419 Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY Sbjct 5420 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 5479 Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLN+GDYFVLTSHTVMPLSAPTL Sbjct 5480 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNIGDYFVLTSHTVMPLSAPTL 5539 Query 241 VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP 300 VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP Sbjct 5540 VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP 5599 Query 301 SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV 360 SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV Sbjct 5600 SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV 5659 Query 361 NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE 420 NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE Sbjct 5660 NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE 5719 Query 421 YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVI 480 YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHK+KSAQCFKMFYKGVI Sbjct 5720 YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKEKSAQCFKMFYKGVI 5779 Query 481 THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE 540 THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE Sbjct 5780 THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE 5839 Query 541 YDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIMSDRDLYDKLQFTSLEIPRRNVATL 600 YDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIMSDRDLYDKLQFTSLE+PRRNVATL Sbjct 5840 YDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIMSDRDLYDKLQFTSLEVPRRNVATL 5899 Query 601 Q 601 Q Sbjct 5900 Q 5900 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bat CoV 279/2005] Sequence ID: P0C6V9.1 Length: 7079 Range 1: 5308 to 5908 Score:1252 bits(3240), Expect:0.0, Method:Compositional matrix adjust., Identities:598/601(99%), Positives:600/601(99%), Gaps:0/601(0%) Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV Sbjct 5308 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 5367 Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120 TQLYLGGMSYYCK HKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY Sbjct 5368 TQLYLGGMSYYCKLHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 5427 Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY Sbjct 5428 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 5487 Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL Sbjct 5488 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 5547 Query 241 VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP 300 VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP Sbjct 5548 VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP 5607 Query 301 SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV 360 SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV Sbjct 5608 SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV 5667 Query 361 NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE 420 NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE Sbjct 5668 NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE 5727 Query 421 YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVI 480 YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHK+KSAQCFKMFYKGVI Sbjct 5728 YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKEKSAQCFKMFYKGVI 5787 Query 481 THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE 540 THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE Sbjct 5788 THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE 5847 Query 541 YDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIMSDRDLYDKLQFTSLEIPRRNVATL 600 YDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIMSDRDLYDKLQFTSLE+PRRNVATL Sbjct 5848 YDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIMSDRDLYDKLQFTSLEVPRRNVATL 5907 Query 601 Q 601 Q Sbjct 5908 Q 5908 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bat SARS coronavirus HKU3] Sequence ID: P0C6W2.1 Length: 7067 Range 1: 5296 to 5896 Score:1249 bits(3233), Expect:0.0, Method:Compositional matrix adjust., Identities:595/601(99%), Positives:601/601(100%), Gaps:0/601(0%) Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV Sbjct 5296 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 5355 Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY Sbjct 5356 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 5415 Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDREL+LSWEVGKPRPPLNRNY Sbjct 5416 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELYLSWEVGKPRPPLNRNY 5475 Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL Sbjct 5476 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 5535 Query 241 VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP 300 VPQEHYVRITGLYPTLNIS+EFSSNVANYQK+GMQKYSTLQGPPGTGKSHFAIGLALYYP Sbjct 5536 VPQEHYVRITGLYPTLNISNEFSSNVANYQKIGMQKYSTLQGPPGTGKSHFAIGLALYYP 5595 Query 301 SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV 360 SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV Sbjct 5596 SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV 5655 Query 361 NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE 420 NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE Sbjct 5656 NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE 5715 Query 421 YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVI 480 YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHK+KSAQCFKM+YKGVI Sbjct 5716 YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKEKSAQCFKMYYKGVI 5775 Query 481 THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE 540 THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE Sbjct 5776 THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE 5835 Query 541 YDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIMSDRDLYDKLQFTSLEIPRRNVATL 600 YDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIMSDRDLYDKLQFTSLE+PRRNVATL Sbjct 5836 YDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIMSDRDLYDKLQFTSLEVPRRNVATL 5895 Query 601 Q 601 Q Sbjct 5896 Q 5896 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Rousettus bat coronavirus HKU9] Sequence ID: P0C6W5.1 Length: 6930 Range 1: 5166 to 5757 Score:973 bits(2515), Expect:0.0, Method:Compositional matrix adjust., Identities:444/592(75%), Positives:518/592(87%), Gaps:0/592(0%) Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60 +VG CV+CNSQTSLRCG CIRRPFLCCKCCYDHV+ST+HKLVLSV PYVCN P CDV DV Sbjct 5166 SVGTCVVCNSQTSLRCGGCIRRPFLCCKCCYDHVVSTTHKLVLSVTPYVCNNPSCDVADV 5225 Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120 TQLYLGGMSYYC+ H+PPISFPLCANGQVFGLYKN C GS +V DFN++ATCDW+N+ DY Sbjct 5226 TQLYLGGMSYYCRDHRPPISFPLCANGQVFGLYKNICTGSPDVADFNSLATCDWSNSKDY 5285 Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180 +LANT TERLKLFAAETL+ATEE K +Y A V+EVLSDREL LSWE GK RPPLNRNY Sbjct 5286 VLANTATERLKLFAAETLRATEENAKQAYASAVVKEVLSDRELVLSWETGKTRPPLNRNY 5345 Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240 VFTG+ +TKNSKVQ+GEY FEKGDYGD V YR +TTYKL VGDYFVLTSH+V PLS+PTL Sbjct 5346 VFTGFHITKNSKVQLGEYIFEKGDYGDVVNYRSSTTYKLQVGDYFVLTSHSVQPLSSPTL 5405 Query 241 VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP 300 +PQE Y ++ GLYP +N+ + F+SNV +YQ+VGM +Y+T+QGPPGTGKSH +IGLALYYP Sbjct 5406 LPQERYTKLVGLYPAMNVPESFASNVVHYQRVGMSRYTTVQGPPGTGKSHLSIGLALYYP 5465 Query 301 SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV 360 SA+IVYTACSHAAVDALCEKA K LPI++CSRI+PA+ARVECF KFKVN QYVF T+ Sbjct 5466 SAKIVYTACSHAAVDALCEKAHKNLPINRCSRIVPAKARVECFSKFKVNDVGAQYVFSTI 5525 Query 361 NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE 420 NALPETTADI+V DE+SM TNYDLS++NAR+RAKH VY+GDPAQLPAPRTLLTKGTL PE Sbjct 5526 NALPETTADILVVDEVSMCTNYDLSMINARVRAKHIVYVGDPAQLPAPRTLLTKGTLAPE 5585 Query 421 YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVI 480 +FNSVCRLM +GPD+FL TC RCP EIVDTVSALVYD KLKA+K + +C+K +YKG + Sbjct 5586 HFNSVCRLMVAVGPDIFLATCYRCPKEIVDTVSALVYDKKLKANKVTTGECYKCYYKGSV 5645 Query 481 THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE 540 THD SSAIN+PQ+G+V+EFL +NP W+ AVFISPYNSQN+VA ++LGL TQTVDSSQGSE Sbjct 5646 THDSSSAINKPQLGLVKEFLIKNPKWQSAVFISPYNSQNSVARRMLGLQTQTVDSSQGSE 5705 Query 541 YDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIMSDRDLYDKLQFTSLEI 592 +DYVI+ QT++TAH+ NVNRFNVAITRAK GILC+MSD LY+ L+FT L++ Sbjct 5706 FDYVIYCQTSDTAHALNVNRFNVAITRAKKGILCVMSDSTLYESLEFTPLDV 5757 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Pipistrellus bat coronavirus HKU5] Sequence ID: P0C6W4.1 Length: 7182 Range 1: 5402 to 5993 Score:924 bits(2387), Expect:0.0, Method:Compositional matrix adjust., Identities:427/592(72%), Positives:501/592(84%), Gaps:0/592(0%) Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60 AVG+CV+C+SQTSLRCG CIRRPFLCCKCCYDHVI+T HK+VLSV+PYVCNAPGCDV DV Sbjct 5402 AVGSCVVCHSQTSLRCGTCIRRPFLCCKCCYDHVIATPHKMVLSVSPYVCNAPGCDVADV 5461 Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120 T+LYLGGMSY+C H+P SFPLCANG VFGLYKN C GS +VT+FN +ATCDWT +GDY Sbjct 5462 TKLYLGGMSYFCIDHRPVCSFPLCANGLVFGLYKNMCTGSPSVTEFNRLATCDWTESGDY 5521 Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180 LANT TE LKLFAAETL+ATEE K SY IAT++E++ +REL L WE GK +PPLNRNY Sbjct 5522 TLANTTTEPLKLFAAETLRATEEASKQSYAIATIKEIVGERELLLVWEAGKAKPPLNRNY 5581 Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240 VFTGY +TKNSKVQ+GEY FE+ DY DAV Y+ +TTYKL VGD FVLTSH+V L APT+ Sbjct 5582 VFTGYHITKNSKVQLGEYVFERIDYSDAVSYKSSTTYKLAVGDIFVLTSHSVATLQAPTI 5641 Query 241 VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP 300 V QE YV+ITGLYPTL + +EF+++VAN+QK G K+ T+QGPPGTGKSHFAIGLA+YYP Sbjct 5642 VNQERYVKITGLYPTLTVPEEFANHVANFQKAGFSKFVTVQGPPGTGKSHFAIGLAIYYP 5701 Query 301 SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV 360 +AR+VYTACSHAAVDALCEKA KYL I KCSRIIPA+ARVEC+D+FKVN T QY+F T+ Sbjct 5702 TARVVYTACSHAAVDALCEKAFKYLNIAKCSRIIPAKARVECYDQFKVNETNSQYLFSTI 5761 Query 361 NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE 420 NALPET+ADI+V DE+SM TNYDLSV+NAR++AKH VY+GDPAQLPAPRTLLT+GTLEPE Sbjct 5762 NALPETSADILVVDEVSMCTNYDLSVINARIKAKHIVYVGDPAQLPAPRTLLTRGTLEPE 5821 Query 421 YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVI 480 FNSV RLM +GPD+FL C RCP EIV+TVSALVY+NKL A K S QCFK+ YKG + Sbjct 5822 NFNSVTRLMCNLGPDIFLSVCYRCPEEIVNTVSALVYNNKLVAKKPASGQCFKILYKGSV 5881 Query 481 THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE 540 THD SSAINRPQ+ V+ F+ NP W KAVFISPYNSQNAVA +LGL TQTVDSSQGSE Sbjct 5882 THDASSAINRPQLNFVKSFIAANPNWSKAVFISPYNSQNAVARSVLGLTTQTVDSSQGSE 5941 Query 541 YDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIMSDRDLYDKLQFTSLEI 592 Y YVIF QT +TAH+ N+NRFNVA+TRA+ GILC+M+ + L+D L+F + + Sbjct 5942 YPYVIFCQTADTAHANNINRFNVAVTRAQKGILCVMTSQALFDSLEFAEVSL 5993 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Betacoronavirus England 1] Sequence ID: K9N7C7.1 Length: 7078 Range 1: 5311 to 5902 Score:922 bits(2383), Expect:0.0, Method:Compositional matrix adjust., Identities:427/592(72%), Positives:503/592(84%), Gaps:0/592(0%) Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60 AVG+CV+C+SQTSLRCG CIRRPFLCCKCCYDHVI+T HK+VLSV+PYVCNAPGC V+DV Sbjct 5311 AVGSCVVCHSQTSLRCGTCIRRPFLCCKCCYDHVIATPHKMVLSVSPYVCNAPGCGVSDV 5370 Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120 T+LYLGGMSY+C H+P SFPLCANG VFGLYKN C GS ++ +FN +ATCDWT +GDY Sbjct 5371 TKLYLGGMSYFCVDHRPVCSFPLCANGLVFGLYKNMCTGSPSIVEFNRLATCDWTESGDY 5430 Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180 LANT TE LKLFAAETL+ATEE K SY IAT++E++ +R+L L WE GK +PPLNRNY Sbjct 5431 TLANTTTEPLKLFAAETLRATEEASKQSYAIATIKEIVGERQLLLVWEAGKSKPPLNRNY 5490 Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240 VFTGY +TKNSKVQ+GEY FE+ DY DAV Y+ +TTYKL VGD FVLTSH+V L+APT+ Sbjct 5491 VFTGYHITKNSKVQLGEYIFERIDYSDAVSYKSSTTYKLTVGDIFVLTSHSVATLTAPTI 5550 Query 241 VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP 300 V QE YV+ITGLYPT+ + +EF+S+VAN+QK G KY T+QGPPGTGKSHFAIGLA+YYP Sbjct 5551 VNQERYVKITGLYPTITVPEEFASHVANFQKSGYSKYVTVQGPPGTGKSHFAIGLAIYYP 5610 Query 301 SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV 360 +AR+VYTACSHAAVDALCEKA KYL I KCSRIIPA+ARVEC+D+FKVN T QY+F T+ Sbjct 5611 TARVVYTACSHAAVDALCEKAFKYLNIAKCSRIIPAKARVECYDRFKVNETNSQYLFSTI 5670 Query 361 NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE 420 NALPET+ADI+V DE+SM TNYDLS++NAR++AKH VY+GDPAQLPAPRTLLT+GTLEPE Sbjct 5671 NALPETSADILVVDEVSMCTNYDLSIINARIKAKHIVYVGDPAQLPAPRTLLTRGTLEPE 5730 Query 421 YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVI 480 FNSV RLM +GPD+FL C RCP EIV TVSALVY+NKL A K+ S QCFK+ YKG + Sbjct 5731 NFNSVTRLMCNLGPDIFLSMCYRCPKEIVSTVSALVYNNKLLAKKELSGQCFKILYKGNV 5790 Query 481 THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE 540 THD SSAINRPQ+ V+ F+T NPAW KAVFISPYNSQNAVA +LGL TQTVDSSQGSE Sbjct 5791 THDASSAINRPQLTFVKNFITANPAWSKAVFISPYNSQNAVARSMLGLTTQTVDSSQGSE 5850 Query 541 YDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIMSDRDLYDKLQFTSLEI 592 Y YVIF QT +TAH+ N+NRFNVAITRA+ GILC+M+ + L++ L+FT L Sbjct 5851 YQYVIFCQTADTAHANNINRFNVAITRAQKGILCVMTSQALFESLEFTELSF 5902 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bat coronavirus (BtCoV/133/2005)] Sequence ID: P0C6W1.1 Length: 7126 Range 1: 5362 to 5953 Score:918 bits(2372), Expect:0.0, Method:Compositional matrix adjust., Identities:422/592(71%), Positives:502/592(84%), Gaps:0/592(0%) Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60 AVG+CV+C+SQTSLRCG CIRRPFLCCKCCYDHVI+T+HK+VLSV+PYVCNAPGCDV+DV Sbjct 5362 AVGSCVVCHSQTSLRCGTCIRRPFLCCKCCYDHVIATTHKMVLSVSPYVCNAPGCDVSDV 5421 Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120 T+LYLGGMSYYC H+P SFPLCANG VFGLYKN C GS ++ +FN +ATCDW+++GDY Sbjct 5422 TKLYLGGMSYYCNDHRPVCSFPLCANGLVFGLYKNMCTGSSSIMEFNRLATCDWSDSGDY 5481 Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180 LANT TE LKLFAAETL+ATEE K SY IAT++E++ +REL L WEVGK +PPLNRNY Sbjct 5482 TLANTTTEPLKLFAAETLRATEEASKQSYAIATIKEIVGERELILVWEVGKSKPPLNRNY 5541 Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240 VFTGY +TKNSKVQ+GEY FE+ DY DAV Y+ +TTYKL VGD FVLTSH+V LSAPT+ Sbjct 5542 VFTGYHLTKNSKVQLGEYVFERIDYSDAVSYKSSTTYKLAVGDIFVLTSHSVATLSAPTI 5601 Query 241 VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP 300 V QE Y++ITG+YPT+ + +EF+++V N+QK G KY T+QGPPGTGKSHFAIGLA+YYP Sbjct 5602 VNQERYLKITGIYPTITVPEEFANHVVNFQKAGFSKYVTVQGPPGTGKSHFAIGLAIYYP 5661 Query 301 SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV 360 +ARIVYTACSHAAVDALC KA KYL I KCSRIIPA+ARVEC+D+FKVN T QY+F TV Sbjct 5662 TARIVYTACSHAAVDALCAKAFKYLNIAKCSRIIPAKARVECYDRFKVNDTNAQYLFSTV 5721 Query 361 NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE 420 NALPE + DI+V DE+SM TNYDLS++N+R++AKH VY+GDPAQLPAPRTLLT+GTLEPE Sbjct 5722 NALPEISVDILVVDEVSMCTNYDLSIINSRVKAKHIVYVGDPAQLPAPRTLLTRGTLEPE 5781 Query 421 YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVI 480 FNSV RLM +GPD+FL C RCP EIV+TVSALVY+NKL A KD S QCFK+ +KG + Sbjct 5782 NFNSVTRLMCNLGPDIFLSVCYRCPKEIVNTVSALVYNNKLSAKKDASGQCFKILFKGSV 5841 Query 481 THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE 540 THD SSAINRPQ+ V+ F+ NP W KAVFISPYNSQNAVA +LGL TQTVDSSQGSE Sbjct 5842 THDASSAINRPQLNFVKTFIAANPNWSKAVFISPYNSQNAVARSMLGLTTQTVDSSQGSE 5901 Query 541 YDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIMSDRDLYDKLQFTSLEI 592 Y YVIF QT +TAH+ N+NRFNVA+TRA+ GILC+M+ + L+D L+F L + Sbjct 5902 YPYVIFCQTADTAHANNLNRFNVAVTRAQKGILCVMTSQVLFDSLEFAELSL 5953 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Tylonycteris bat coronavirus HKU4] Sequence ID: P0C6W3.1 Length: 7119 Range 1: 5355 to 5946 Score:916 bits(2368), Expect:0.0, Method:Compositional matrix adjust., Identities:422/592(71%), Positives:500/592(84%), Gaps:0/592(0%) Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60 AVG+CV+C+SQTSLRCG CIRRPFLCCKCCYDHVI+T HK+VLSV+PYVCNAPGCDV+DV Sbjct 5355 AVGSCVVCHSQTSLRCGTCIRRPFLCCKCCYDHVIATPHKMVLSVSPYVCNAPGCDVSDV 5414 Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120 T+LYLGGMSYYC H+P SFPLCANG VFGLYKN C GS ++ +FN +ATCDW+++GDY Sbjct 5415 TKLYLGGMSYYCNDHRPVCSFPLCANGLVFGLYKNMCTGSSSIMEFNRLATCDWSDSGDY 5474 Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180 LANT TE LKLFAAETL+ATEE K SY IAT++E++ +REL L WEVGK +PPLNRNY Sbjct 5475 TLANTTTEPLKLFAAETLRATEEASKQSYAIATIKEIVGERELILVWEVGKSKPPLNRNY 5534 Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240 VFTGY +TKNSKVQ+GEY FE+ DY DAV Y+ +TTYKL VGD FVLTSH+V LSAPT+ Sbjct 5535 VFTGYHLTKNSKVQLGEYVFERIDYSDAVSYKSSTTYKLAVGDIFVLTSHSVATLSAPTI 5594 Query 241 VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP 300 V QE Y++ITG+YPT+ + +EF+++V N+QK G KY T+QGPPGTGKSHFAIGLA+YYP Sbjct 5595 VNQERYLKITGIYPTITVPEEFANHVVNFQKAGFSKYVTVQGPPGTGKSHFAIGLAIYYP 5654 Query 301 SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV 360 +ARIVYTACSHAAVDALCEKA KYL I KCSRIIPA+ARVEC+D+FKVN T QY+F TV Sbjct 5655 TARIVYTACSHAAVDALCEKAFKYLNIAKCSRIIPAKARVECYDRFKVNDTNSQYLFSTV 5714 Query 361 NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE 420 NALPE + DI+V DE+SM TNYDLS++N+R++AKH VY+GDPAQLPAPRTLL +GTLEPE Sbjct 5715 NALPEISVDILVVDEVSMCTNYDLSIINSRVKAKHIVYVGDPAQLPAPRTLLIRGTLEPE 5774 Query 421 YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVI 480 FNSV RLM +GPD+FL C RCP EIV TVSALVY+NKL A KD S QCFK+ +KG + Sbjct 5775 NFNSVTRLMCNLGPDIFLSVCYRCPKEIVSTVSALVYNNKLSAKKDASGQCFKILFKGSV 5834 Query 481 THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE 540 THD SSAINRPQ+ V+ F+ NP W KAVFISPYNSQNAVA +LGL TQTVDSSQGSE Sbjct 5835 THDASSAINRPQLNFVKTFIAANPNWSKAVFISPYNSQNAVARSMLGLTTQTVDSSQGSE 5894 Query 541 YDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIMSDRDLYDKLQFTSLEI 592 Y YVIF QT +TAH+ N+NRFNVA+TRA+ GILC+M+ + L+D L+F L + Sbjct 5895 YPYVIFCQTADTAHANNLNRFNVAVTRAQKGILCVMTSQVLFDSLEFAELSL 5946 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bovine coronavirus Mebus] Sequence ID: P0C6W9.1 Length: 7094 Range 1: 5298 to 5890 Score:878 bits(2268), Expect:0.0, Method:Compositional matrix adjust., Identities:409/596(69%), Positives:490/596(82%), Gaps:5/596(0%) Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60 +VGACV+C+SQTSLRCG+CIR+P LCCKCCYDHV++T HK VLSV+PYVCNAPGCDV DV Sbjct 5298 SVGACVVCSSQTSLRCGSCIRKPLLCCKCCYDHVMATDHKYVLSVSPYVCNAPGCDVNDV 5357 Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120 T+LYLGGMSYYC+ HKP SF L NG VFGLYK +C GS + DFN IA+C WT+ DY Sbjct 5358 TKLYLGGMSYYCEDHKPQYSFKLVMNGMVFGLYKQSCTGSPYIDDFNRIASCKWTDVDDY 5417 Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180 ILAN CTERLKLFAAET KATEE FK SY AT++E++S+REL LSWE+GK +PPLN+NY Sbjct 5418 ILANECTERLKLFAAETQKATEEAFKQSYASATIQEIVSERELILSWEIGKVKPPLNKNY 5477 Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240 VFTGY TKN K +GEY F+K + + V YR TTTYKL+VGD FVLTSH+V LSAPTL Sbjct 5478 VFTGYHFTKNGKTVLGEYVFDKSELTNGVYYRATTTYKLSVGDVFVLTSHSVANLSAPTL 5537 Query 241 VPQEHY--VRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALY 298 VPQE+Y +R +Y L + F +NV NYQ +GM++Y T+QGPPGTGKSH AIGLA+Y Sbjct 5538 VPQENYSSIRFASVYSVL---ETFQNNVVNYQHIGMKRYCTVQGPPGTGKSHLAIGLAVY 5594 Query 299 YPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFC 358 Y +AR+VYTA SHAAVDALCEKA K+L I+ C+RI+PA+ RVEC+DKFK+N T +YVF Sbjct 5595 YCTARVVYTAASHAAVDALCEKAYKFLNINDCTRIVPAKVRVECYDKFKINDTTRKYVFT 5654 Query 359 TVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLE 418 T+NALPE DIVV DE+SM TNY+LSV+NAR+RAKHYVYIGDPAQLPAPR LL+KGTLE Sbjct 5655 TINALPEMVTDIVVVDEVSMLTNYELSVINARIRAKHYVYIGDPAQLPAPRVLLSKGTLE 5714 Query 419 PEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKG 478 P+YFN+V +LM +GPD+FLGTC RCP EIVDTVSALVY+NKLKA + S+ CFK++YKG Sbjct 5715 PKYFNTVTKLMCCLGPDIFLGTCYRCPKEIVDTVSALVYENKLKAKNESSSLCFKVYYKG 5774 Query 479 VITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQG 538 V TH+ SSA+N QI ++ +FL NP W KAVFISPYNSQN A ++LGL TQTVDS+QG Sbjct 5775 VTTHESSSAVNMQQIYLINKFLKANPLWHKAVFISPYNSQNFAARRVLGLQTQTVDSAQG 5834 Query 539 SEYDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIMSDRDLYDKLQFTSLEIPR 594 SEYDYVI++QT ETAHS NVNRFNVAITRAK GILC+MS+ L++ LQFT+L + + Sbjct 5835 SEYDYVIYSQTAETAHSVNVNRFNVAITRAKKGILCVMSNMQLFEALQFTTLTVDK 5890 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bovine coronavirus strain Quebec] Sequence ID: P0C6X0.1 Length: 7059 Range 1: 5298 to 5890 Score:877 bits(2267), Expect:0.0, Method:Compositional matrix adjust., Identities:409/596(69%), Positives:490/596(82%), Gaps:5/596(0%) Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60 +VGACV+C+SQTSLRCG+CIR+P LCCKCCYDHV++T HK VLSV+PYVCNAPGCDV DV Sbjct 5298 SVGACVVCSSQTSLRCGSCIRKPLLCCKCCYDHVMATDHKYVLSVSPYVCNAPGCDVNDV 5357 Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120 T+LYLGGMSYYC+ HKP SF L NG VFGLYK +C GS + DFN IA+C WT+ DY Sbjct 5358 TKLYLGGMSYYCEDHKPQYSFKLVMNGMVFGLYKQSCTGSPYIDDFNRIASCKWTDVDDY 5417 Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180 ILAN CTERLKLFAAET KATEE FK SY AT++E++S+REL LSWE+GK +PPLN+NY Sbjct 5418 ILANECTERLKLFAAETQKATEEAFKQSYASATIQEIVSERELILSWEIGKVKPPLNKNY 5477 Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240 VFTGY TKN K +GEY F+K + + V YR TTTYKL+VGD FVLTSH+V LSAPTL Sbjct 5478 VFTGYHFTKNGKTVLGEYVFDKSELTNGVYYRATTTYKLSVGDVFVLTSHSVANLSAPTL 5537 Query 241 VPQEHY--VRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALY 298 VPQE+Y +R +Y L + F +NV NYQ +GM++Y T+QGPPGTGKSH AIGLA+Y Sbjct 5538 VPQENYSSIRFASVYSVL---ETFQNNVVNYQHIGMKRYCTVQGPPGTGKSHLAIGLAVY 5594 Query 299 YPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFC 358 Y +AR+VYTA SHAAVDALCEKA K+L I+ C+RI+PA+ RVEC+DKFK+N T +YVF Sbjct 5595 YCTARVVYTAASHAAVDALCEKAYKFLNINDCTRIVPAKVRVECYDKFKINDTTRKYVFT 5654 Query 359 TVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLE 418 T+NALPE DIVV DE+SM TNY+LSV+NAR+RAKHYVYIGDPAQLPAPR LL+KGTLE Sbjct 5655 TINALPEMVTDIVVVDEVSMLTNYELSVINARIRAKHYVYIGDPAQLPAPRVLLSKGTLE 5714 Query 419 PEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKG 478 P+YFN+V +LM +GPD+FLGTC RCP EIVDTVSALVY+NKLKA + S+ CFK++YKG Sbjct 5715 PKYFNTVTKLMCCLGPDIFLGTCYRCPKEIVDTVSALVYENKLKAKNESSSLCFKVYYKG 5774 Query 479 VITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQG 538 V TH+ SSA+N QI ++ +FL NP W KAVFISPYNSQN A ++LGL TQTVDS+QG Sbjct 5775 VTTHESSSAVNMQQIYLINKFLKANPLWHKAVFISPYNSQNFAAKRVLGLQTQTVDSAQG 5834 Query 539 SEYDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIMSDRDLYDKLQFTSLEIPR 594 SEYDYVI++QT ETAHS NVNRFNVAITRAK GILC+MS+ L++ LQFT+L + + Sbjct 5835 SEYDYVIYSQTAETAHSVNVNRFNVAITRAKKGILCVMSNMQLFEALQFTTLTVDK 5890 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bovine respiratory coronavirus (strain 98TXSF-110-LUN)] Sequence ID: P0C6W8.1 Length: 7094 Range 1: 5298 to 5890 Score:877 bits(2267), Expect:0.0, Method:Compositional matrix adjust., Identities:409/596(69%), Positives:490/596(82%), Gaps:5/596(0%) Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60 +VGACV+C+SQTSLRCG+CIR+P LCCKCCYDHV++T HK VLSV+PYVCNAPGCDV DV Sbjct 5298 SVGACVVCSSQTSLRCGSCIRKPLLCCKCCYDHVMATDHKYVLSVSPYVCNAPGCDVNDV 5357 Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120 T+LYLGGMSYYC+ HKP SF L NG VFGLYK +C GS + DFN IA+C WT+ DY Sbjct 5358 TKLYLGGMSYYCEDHKPQYSFKLVMNGMVFGLYKQSCTGSPYIDDFNRIASCKWTDVDDY 5417 Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180 ILAN CTERLKLFAAET KATEE FK SY AT++E++S+REL LSWE+GK +PPLN+NY Sbjct 5418 ILANECTERLKLFAAETQKATEEAFKQSYASATIQEIVSERELILSWEIGKVKPPLNKNY 5477 Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240 VFTGY TKN K +GEY F+K + + V YR TTTYKL+VGD FVLTSH+V LSAPTL Sbjct 5478 VFTGYHFTKNGKTVLGEYVFDKSELTNGVYYRATTTYKLSVGDVFVLTSHSVANLSAPTL 5537 Query 241 VPQEHY--VRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALY 298 VPQE+Y +R +Y L + F +NV NYQ +GM++Y T+QGPPGTGKSH AIGLA+Y Sbjct 5538 VPQENYSSIRFASVYSVL---ETFQNNVVNYQHIGMKRYCTVQGPPGTGKSHLAIGLAVY 5594 Query 299 YPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFC 358 Y +AR+VYTA SHAAVDALCEKA K+L I+ C+RI+PA+ RVEC+DKFK+N T +YVF Sbjct 5595 YCTARVVYTAASHAAVDALCEKAYKFLNINDCTRIVPAKVRVECYDKFKINDTTRKYVFT 5654 Query 359 TVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLE 418 T+NALPE DIVV DE+SM TNY+LSV+NAR+RAKHYVYIGDPAQLPAPR LL+KGTLE Sbjct 5655 TINALPEMVTDIVVVDEVSMLTNYELSVINARIRAKHYVYIGDPAQLPAPRVLLSKGTLE 5714 Query 419 PEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKG 478 P+YFN+V +LM +GPD+FLGTC RCP EIVDTVSALVY+NKLKA + S+ CFK++YKG Sbjct 5715 PKYFNTVTKLMCCLGPDIFLGTCYRCPKEIVDTVSALVYENKLKAKNESSSLCFKVYYKG 5774 Query 479 VITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQG 538 V TH+ SSA+N QI ++ +FL NP W KAVFISPYNSQN A ++LGL TQTVDS+QG Sbjct 5775 VTTHESSSAVNMQQIYLINKFLKANPLWHKAVFISPYNSQNFAAKRVLGLQTQTVDSAQG 5834 Query 539 SEYDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIMSDRDLYDKLQFTSLEIPR 594 SEYDYVI++QT ETAHS NVNRFNVAITRAK GILC+MS+ L++ LQFT+L + + Sbjct 5835 SEYDYVIYSQTAETAHSVNVNRFNVAITRAKKGILCVMSNMQLFEALQFTTLTLDK 5890 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bovine enteric coronavirus (strain 98TXSF-110-ENT)] Sequence ID: P0C6W7.1 Length: 7094 Range 1: 5298 to 5890 Score:877 bits(2267), Expect:0.0, Method:Compositional matrix adjust., Identities:409/596(69%), Positives:490/596(82%), Gaps:5/596(0%) Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60 +VGACV+C+SQTSLRCG+CIR+P LCCKCCYDHV++T HK VLSV+PYVCNAPGCDV DV Sbjct 5298 SVGACVVCSSQTSLRCGSCIRKPLLCCKCCYDHVMATDHKYVLSVSPYVCNAPGCDVNDV 5357 Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120 T+LYLGGMSYYC+ HKP SF L NG VFGLYK +C GS + DFN IA+C WT+ DY Sbjct 5358 TKLYLGGMSYYCEDHKPQYSFKLVMNGMVFGLYKQSCTGSPYIDDFNRIASCKWTDVDDY 5417 Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180 ILAN CTERLKLFAAET KATEE FK SY AT++E++S+REL LSWE+GK +PPLN+NY Sbjct 5418 ILANECTERLKLFAAETQKATEEAFKQSYASATIQEIVSERELILSWEIGKVKPPLNKNY 5477 Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240 VFTGY TKN K +GEY F+K + + V YR TTTYKL+VGD FVLTSH+V LSAPTL Sbjct 5478 VFTGYHFTKNGKTVLGEYVFDKSELTNGVYYRATTTYKLSVGDVFVLTSHSVANLSAPTL 5537 Query 241 VPQEHY--VRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALY 298 VPQE+Y +R +Y L + F +NV NYQ +GM++Y T+QGPPGTGKSH AIGLA+Y Sbjct 5538 VPQENYSSIRFASVYSVL---ETFQNNVVNYQHIGMKRYCTVQGPPGTGKSHLAIGLAVY 5594 Query 299 YPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFC 358 Y +AR+VYTA SHAAVDALCEKA K+L I+ C+RI+PA+ RVEC+DKFK+N T +YVF Sbjct 5595 YCTARVVYTAASHAAVDALCEKAYKFLNINDCTRIVPAKVRVECYDKFKINDTTRKYVFT 5654 Query 359 TVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLE 418 T+NALPE DIVV DE+SM TNY+LSV+NAR+RAKHYVYIGDPAQLPAPR LL+KGTLE Sbjct 5655 TINALPEMVTDIVVVDEVSMLTNYELSVINARIRAKHYVYIGDPAQLPAPRVLLSKGTLE 5714 Query 419 PEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKG 478 P+YFN+V +LM +GPD+FLGTC RCP EIVDTVSALVY+NKLKA + S+ CFK++YKG Sbjct 5715 PKYFNTVTKLMCCLGPDIFLGTCYRCPKEIVDTVSALVYENKLKAKNESSSLCFKVYYKG 5774 Query 479 VITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQG 538 V TH+ SSA+N QI ++ +FL NP W KAVFISPYNSQN A ++LGL TQTVDS+QG Sbjct 5775 VTTHESSSAVNMQQIYLINKFLKANPLWHKAVFISPYNSQNFAAKRVLGLQTQTVDSAQG 5834 Query 539 SEYDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIMSDRDLYDKLQFTSLEIPR 594 SEYDYVI++QT ETAHS NVNRFNVAITRAK GILC+MS+ L++ LQFT+L + + Sbjct 5835 SEYDYVIYSQTAETAHSVNVNRFNVAITRAKKGILCVMSNMQLFEALQFTTLTLDK 5890 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Human coronavirus OC43] Sequence ID: P0C6X6.1 Length: 7095 Range 1: 5298 to 5890 Score:875 bits(2260), Expect:0.0, Method:Compositional matrix adjust., Identities:408/596(68%), Positives:489/596(82%), Gaps:5/596(0%) Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60 +VGACV+C+SQTSLRCG+CIR+P LCCKCCYDHV++T HK VLSV+PYVCNAPGCDV DV Sbjct 5298 SVGACVVCSSQTSLRCGSCIRKPLLCCKCCYDHVMATDHKYVLSVSPYVCNAPGCDVNDV 5357 Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120 T+LYLGGMSYYC+ HKP SF L NG VFGLYK +C GS + DFN IA+C WT+ DY Sbjct 5358 TKLYLGGMSYYCEDHKPQYSFKLVMNGLVFGLYKQSCTGSPYIDDFNRIASCKWTDVDDY 5417 Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180 ILAN CTERLKLFAAET KATEE FK SY AT++E++S+REL LSWE+GK +PPLN+NY Sbjct 5418 ILANECTERLKLFAAETQKATEEAFKQSYASATIQEIVSERELILSWEIGKVKPPLNKNY 5477 Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240 VFTGY TKN K +GEY F+K + + V YR TTTYKL+VGD FVLTSH+V LSAPTL Sbjct 5478 VFTGYHFTKNGKTVLGEYVFDKSELTNGVYYRATTTYKLSVGDVFVLTSHSVANLSAPTL 5537 Query 241 VPQEHY--VRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALY 298 VPQE+Y +R +Y L + F +NV NYQ +GM++Y T+QGPPGTGKSH AIGLA++ Sbjct 5538 VPQENYSSIRFASVYSVL---ETFQNNVVNYQHIGMKRYCTVQGPPGTGKSHLAIGLAVF 5594 Query 299 YPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFC 358 Y +AR+VYTA SHAAVDALCEKA K+L I+ C+RI+PA+ RVEC+DKFK+N T +YVF Sbjct 5595 YCTARVVYTAASHAAVDALCEKAYKFLNINDCTRIVPAKVRVECYDKFKINDTTRKYVFT 5654 Query 359 TVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLE 418 T+NALPE DIVV DE+SM TNY+LSV+NAR+RAKHYVYIGDPAQLPAPR LL+KGTLE Sbjct 5655 TINALPEMVTDIVVVDEVSMLTNYELSVINARIRAKHYVYIGDPAQLPAPRVLLSKGTLE 5714 Query 419 PEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKG 478 P+YFN+V +LM +GPD+FLGTC RCP EIVDTVSALVY+NKLKA + S CFK++YKG Sbjct 5715 PKYFNTVTKLMCCLGPDIFLGTCYRCPKEIVDTVSALVYENKLKAKNESSLLCFKVYYKG 5774 Query 479 VITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQG 538 V TH+ SSA+N QI ++ +FL NP W KAVFISPYNSQN A ++LGL TQTVDS+QG Sbjct 5775 VTTHESSSAVNMQQIYLINKFLKANPLWHKAVFISPYNSQNFAAKRVLGLQTQTVDSAQG 5834 Query 539 SEYDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIMSDRDLYDKLQFTSLEIPR 594 SEYDYVI++QT ETAHS NVNRFNVAITRAK GILC+MS+ L++ LQFT+L + + Sbjct 5835 SEYDYVIYSQTAETAHSVNVNRFNVAITRAKKGILCVMSNMQLFEALQFTTLTLDK 5890 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Murine hepatitis virus strain A59] Sequence ID: P0C6X9.1 Length: 7176 Range 1: 5383 to 5982 Score:866 bits(2238), Expect:0.0, Method:Compositional matrix adjust., Identities:406/603(67%), Positives:485/603(80%), Gaps:5/603(0%) Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60 +VGACV+C+SQTSLRCG+CIR+P LCCKC YDHV+ST HK VLSV+PYVCN+PGCDV DV Sbjct 5383 SVGACVVCSSQTSLRCGSCIRKPLLCCKCAYDHVMSTDHKYVLSVSPYVCNSPGCDVNDV 5442 Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120 T+LYLGGMSYYC+ HKP SF L NG VFGLYK +C GS + DFN IA+C WT DY Sbjct 5443 TKLYLGGMSYYCEDHKPQYSFKLVMNGMVFGLYKQSCTGSPYIEDFNKIASCKWTEVDDY 5502 Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180 +LAN CTERLKLFAAET KATEE FK Y AT+RE++SDREL LSWE+GK RPPLN+NY Sbjct 5503 VLANECTERLKLFAAETQKATEEAFKQCYASATIREIVSDRELILSWEIGKVRPPLNKNY 5562 Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240 VFTGY T N K +GEY F+K + + V YR TTTYKL+VGD F+LTSH V LSAPTL Sbjct 5563 VFTGYHFTNNGKTVLGEYVFDKSELTNGVYYRATTTYKLSVGDVFILTSHAVSSLSAPTL 5622 Query 241 VPQEHY--VRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALY 298 VPQE+Y +R +Y ++ + F +NV NYQ +GM++Y T+QGPPGTGKSH AIGLA+Y Sbjct 5623 VPQENYTSIRFASVY---SVPETFQNNVPNYQHIGMKRYCTVQGPPGTGKSHLAIGLAVY 5679 Query 299 YPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFC 358 Y +AR+VYTA SHAAVDALCEKA K+L I+ C+RI+PA+ RV+C+DKFKVN T +YVF Sbjct 5680 YCTARVVYTAASHAAVDALCEKAHKFLNINDCTRIVPAKVRVDCYDKFKVNDTTRKYVFT 5739 Query 359 TVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLE 418 T+NALPE DI+V DE+SM TNY+LSV+N+R+RAKHYVYIGDPAQLPAPR LL KGTLE Sbjct 5740 TINALPELVTDIIVVDEVSMLTNYELSVINSRVRAKHYVYIGDPAQLPAPRVLLNKGTLE 5799 Query 419 PEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKG 478 P YFNSV +LM +GPD+FLGTC RCP EIVDTVSALVY+NKLKA D S+ CFK++YKG Sbjct 5800 PRYFNSVTKLMCCLGPDIFLGTCYRCPKEIVDTVSALVYNNKLKAKNDNSSMCFKVYYKG 5859 Query 479 VITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQG 538 TH+ SSA+N QI ++ +FL NP+W AVFISPYNSQN VA ++LGL TQTVDS+QG Sbjct 5860 QTTHESSSAVNMQQIHLISKFLKANPSWSNAVFISPYNSQNYVAKRVLGLQTQTVDSAQG 5919 Query 539 SEYDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIMSDRDLYDKLQFTSLEIPRRNVA 598 SEYD+VI++QT ETAHS NVNRFNVAITRAK GILC+MS L++ L FT+L + + N Sbjct 5920 SEYDFVIYSQTAETAHSVNVNRFNVAITRAKKGILCVMSSMQLFESLNFTTLTLDKINNP 5979 Query 599 TLQ 601 LQ Sbjct 5980 RLQ 5982 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Murine hepatitis virus strain 2] Sequence ID: P0C6X8.1 Length: 7124 Range 1: 5331 to 5930 Score:865 bits(2234), Expect:0.0, Method:Compositional matrix adjust., Identities:405/603(67%), Positives:485/603(80%), Gaps:5/603(0%) Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60 +VGACV+C+SQTSLRCG+CIR+P LCCKC YDHV+ST HK VLSV+PYVCN+PGCDV DV Sbjct 5331 SVGACVVCSSQTSLRCGSCIRKPLLCCKCAYDHVMSTDHKYVLSVSPYVCNSPGCDVNDV 5390 Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120 T+LYLGGMSYYC+ HKP SF L NG VFGLYK +C GS + DFN IA+C WT DY Sbjct 5391 TKLYLGGMSYYCEDHKPQYSFKLVMNGMVFGLYKQSCTGSPYIEDFNKIASCKWTEVDDY 5450 Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180 +LAN CTERLKLFAAET KATEE+FK Y AT+RE++SDREL LSWE+GK RPPLN+NY Sbjct 5451 VLANECTERLKLFAAETQKATEESFKQCYASATIREIVSDRELILSWEIGKVRPPLNKNY 5510 Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240 VFTGY T N K +GEY F+K + + V YR TTTYKL+VGD F+LTSH V LSAPTL Sbjct 5511 VFTGYHFTSNGKTVLGEYVFDKSELTNGVYYRATTTYKLSVGDVFILTSHAVSSLSAPTL 5570 Query 241 VPQEHY--VRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALY 298 VPQE+Y +R +Y ++ + F +NV NYQ +GM++Y T+QGPPGTGKSH AIGLA+Y Sbjct 5571 VPQENYTSIRFASVY---SVPETFQNNVPNYQHIGMKRYCTVQGPPGTGKSHLAIGLAVY 5627 Query 299 YPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFC 358 Y +AR+VYTA SHAAVDALCEKA K+L I+ C+RI+PA+ RV+C+DKFKVN T +YVF Sbjct 5628 YCTARVVYTAASHAAVDALCEKAYKFLNINDCTRIVPAKVRVDCYDKFKVNDTTRKYVFT 5687 Query 359 TVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLE 418 T+NALPE DI+V DE+SM TNY+LSV+N+R+RAKHYVYIGDPAQLPAPR LL KGTLE Sbjct 5688 TINALPELVTDIIVVDEVSMLTNYELSVINSRVRAKHYVYIGDPAQLPAPRVLLNKGTLE 5747 Query 419 PEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKG 478 P YFNSV +LM +GPD+FLGTC RCP EIVDTVSALVY NKLKA D S+ CFK++YKG Sbjct 5748 PRYFNSVTKLMCCLGPDIFLGTCYRCPKEIVDTVSALVYHNKLKAKNDNSSMCFKVYYKG 5807 Query 479 VITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQG 538 TH+ SSA+N QI ++ +FL NP+W AVFISPYNSQN VA ++LGL TQTVDS+QG Sbjct 5808 QTTHESSSAVNMQQIYLISKFLKANPSWSNAVFISPYNSQNYVAKRVLGLQTQTVDSAQG 5867 Query 539 SEYDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIMSDRDLYDKLQFTSLEIPRRNVA 598 SEYD+VI++QT ETAHS NVNRFNVAITRAK GILC+MS L++ L F++L + + N Sbjct 5868 SEYDFVIYSQTAETAHSVNVNRFNVAITRAKKGILCVMSSMQLFESLNFSTLTLDKINNP 5927 Query 599 TLQ 601 LQ Sbjct 5928 RLQ 5930 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyl transferase; AltName: Full=nsp16 [Murine hepatitis virus strain JHM] Sequence ID: P0C6Y0.1 Length: 7180 Range 1: 5389 to 5988 Score:847 bits(2189), Expect:0.0, Method:Compositional matrix adjust., Identities:400/603(66%), Positives:477/603(79%), Gaps:5/603(0%) Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60 +VGACV+C+SQTSLRCG+CIR+P LCCKC YDHV+ST HK VLSV+PYVCN+PGCDV DV Sbjct 5389 SVGACVVCSSQTSLRCGSCIRKPLLCCKCAYDHVMSTDHKYVLSVSPYVCNSPGCDVNDV 5448 Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120 T+LYLGGMSYYC++HKP SF L NG VFGLYK +C GS + DFN IA+C WT DY Sbjct 5449 TKLYLGGMSYYCEAHKPQYSFKLVMNGMVFGLYKQSCTGSPYIEDFNKIASCKWTEVDDY 5508 Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180 +LAN CTERLKLFAAET KATEE FK Y AT+RE++SDREL LSWE+GK RPPLN+NY Sbjct 5509 VLANECTERLKLFAAETQKATEEAFKQCYASATIREIVSDRELILSWEIGKVRPPLNKNY 5568 Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240 VFTGY T N K +GEY F+K + + V YR TTTYKL+VGD F+LTSH V LSAPTL Sbjct 5569 VFTGYHFTNNGKTVLGEYVFDKSELTNGVYYRATTTYKLSVGDVFILTSHAVSSLSAPTL 5628 Query 241 VPQEHY--VRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALY 298 VPQE+Y VR Y ++ + F +NV NYQ +G+++Y T+QGPPGTGKSH AIG A+Y Sbjct 5629 VPQENYTSVRFASAY---SVPETFQNNVPNYQHIGIKRYCTVQGPPGTGKSHLAIGHAVY 5685 Query 299 YPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFC 358 Y +AR+VYTA SHAAVDALCEKA K+L I+ C+RI+PA+ RV+C+DKF VN T +YVF Sbjct 5686 YCTARVVYTAASHAAVDALCEKAHKFLNINDCARIVPAKLRVDCYDKFNVNDTTRKYVFT 5745 Query 359 TVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLE 418 T+NALPE DI+V DE+SM TNY+LSV+N+R+RAKHYVYIGDPAQLPAPR LL KGTLE Sbjct 5746 TINALPELVTDIIVVDEVSMLTNYELSVINSRVRAKHYVYIGDPAQLPAPRVLLNKGTLE 5805 Query 419 PEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKG 478 P YFNSV +LM +GPD+FLGTC RCP EIVDTVSALVY+NKLKA D SA CFK++YKG Sbjct 5806 PRYFNSVTKLMCCLGPDIFLGTCYRCPKEIVDTVSALVYNNKLKAKNDNSAMCFKVYYKG 5865 Query 479 VITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQG 538 TH+ SSA+N QI ++ + L NP+W AVFISPYNSQN VA ++LGL TQT DS+QG Sbjct 5866 QTTHESSSAVNMQQIHLISKLLKANPSWSNAVFISPYNSQNYVAKRVLGLQTQTADSAQG 5925 Query 539 SEYDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIMSDRDLYDKLQFTSLEIPRRNVA 598 S YD+VI++QT +TAHS NVNRFNVAITRAK GILC+MS L FT+L + + N Sbjct 5926 SAYDFVIYSQTAQTAHSVNVNRFNVAITRAKKGILCVMSSMQLIGVFNFTTLTLDKINNP 5985 Query 599 TLQ 601 LQ Sbjct 5986 RLQ 5988 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Human coronavirus HKU1 (isolate N2)] Sequence ID: P0C6X3.1 Length: 7152 Range 1: 5356 to 5954 Score:845 bits(2183), Expect:0.0, Method:Compositional matrix adjust., Identities:397/604(66%), Positives:484/604(80%), Gaps:9/604(1%) Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60 +VGACV+C+SQTSLRCG+CIR+P LCCKCCYDHV++T+HK VLSV+PYVCNAP CDV+DV Sbjct 5356 SVGACVVCSSQTSLRCGSCIRKPLLCCKCCYDHVMATNHKYVLSVSPYVCNAPNCDVSDV 5415 Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120 T+LYLGGMSYYC++HKP SF L NG VFGLYK +C GS + DFN IA+C WT DY Sbjct 5416 TKLYLGGMSYYCENHKPHYSFKLVMNGMVFGLYKQSCTGSPYIDDFNKIASCKWTEVDDY 5475 Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180 +LAN C ERLKLFAAET KATEE FK SY AT++E++SDRE+ L WE GK +PPLN+NY Sbjct 5476 VLANECIERLKLFAAETQKATEEAFKQSYASATIQEIVSDREIILCWETGKVKPPLNKNY 5535 Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240 VFTGY T K +GEY F+K + + V YR TTTYKL++GD FVLTSH+V LSAPTL Sbjct 5536 VFTGYHFTSTGKTVLGEYVFDKSELTNGVYYRATTTYKLSIGDVFVLTSHSVANLSAPTL 5595 Query 241 VPQEHY--VRITGLY--PTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLA 296 VPQE+Y +R + +Y P L F +NVANYQ +GM++Y T+QGPPGTGKSH AIGLA Sbjct 5596 VPQENYASIRFSSVYSVPLL-----FQTNVANYQHIGMKRYCTVQGPPGTGKSHLAIGLA 5650 Query 297 LYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYV 356 +YY +AR+VYTA SHAAVDALCEKA K+L I+ C+RIIPA+ RV+C+DKFK+N T +YV Sbjct 5651 VYYYTARVVYTAASHAAVDALCEKAYKFLNINDCTRIIPAKVRVDCYDKFKINDTTCKYV 5710 Query 357 FCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGT 416 F T+NALPE DIVV DE+SM TNY+LSV+NAR++AKHYVYIGDPAQLPAPR LL+KG+ Sbjct 5711 FTTINALPELVTDIVVVDEVSMLTNYELSVINARVKAKHYVYIGDPAQLPAPRVLLSKGS 5770 Query 417 LEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFY 476 LEP +FNS+ ++M +GPD+FLG C RCP EIV+TVSALVYDNKLKA D S+ CFK+++ Sbjct 5771 LEPRHFNSITKIMCCLGPDIFLGNCYRCPKEIVETVSALVYDNKLKAKNDNSSLCFKVYF 5830 Query 477 KGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSS 536 KG TH+ SSA+N QI ++ +FL NP W AVFISPYNSQN VA +ILG+ TQTVDS+ Sbjct 5831 KGQTTHESSSAVNIQQIYLISKFLKANPVWNSAVFISPYNSQNYVAKRILGVQTQTVDSA 5890 Query 537 QGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIMSDRDLYDKLQFTSLEIPRRN 596 QGSEYDYVI++QT ETAHS NVNRFNVAITRAK GI C+MS+ L++ L F +L + + Sbjct 5891 QGSEYDYVIYSQTAETAHSINVNRFNVAITRAKKGIFCVMSNMQLFESLNFITLPLDKIQ 5950 Query 597 VATL 600 TL Sbjct 5951 NQTL 5954 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Human coronavirus HKU1 (isolate N1)] Sequence ID: P0C6X2.1 Length: 7182 Range 1: 5386 to 5984 Score:845 bits(2182), Expect:0.0, Method:Compositional matrix adjust., Identities:394/602(65%), Positives:484/602(80%), Gaps:5/602(0%) Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60 +VGACV+C+SQTSLRCG+CIR+P LCCKCCYDHV++T+HK VLSV+PYVCNAP CDV+DV Sbjct 5386 SVGACVVCSSQTSLRCGSCIRKPLLCCKCCYDHVMATNHKYVLSVSPYVCNAPNCDVSDV 5445 Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120 T+LYLGGMSYYC++HKP SF L NG VFGLYK +C GS + DFN IA+C WT DY Sbjct 5446 TKLYLGGMSYYCENHKPHYSFKLVMNGMVFGLYKQSCTGSPYIDDFNKIASCKWTEVDDY 5505 Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180 +LAN C ERLKLFAAET KATEE FK SY AT++E++SDRE+ L WE GK +PPLN+NY Sbjct 5506 VLANECIERLKLFAAETQKATEEAFKQSYASATIQEIVSDREVILCWETGKVKPPLNKNY 5565 Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240 VFTGY T K +GEY F+K + + V YR TTTYKL++GD FVLTSH+V LSAPTL Sbjct 5566 VFTGYHFTSTGKTVLGEYVFDKSELTNGVYYRATTTYKLSIGDVFVLTSHSVASLSAPTL 5625 Query 241 VPQEHY--VRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALY 298 VPQE+Y +R + +Y ++ F +NVANYQ +GM++Y T+QGPPGTGKSH AIGLA+Y Sbjct 5626 VPQENYASIRFSSVY---SVPLVFQNNVANYQHIGMKRYCTVQGPPGTGKSHLAIGLAVY 5682 Query 299 YPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFC 358 Y +AR+VYTA SHAAVDALCEKA K+L I+ C+RIIPA+ RV+C+DKFK+N T +YVF Sbjct 5683 YYTARVVYTAASHAAVDALCEKAYKFLNINDCTRIIPAKVRVDCYDKFKINDTTCKYVFT 5742 Query 359 TVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLE 418 T+NALPE DIVV DE+SM TNY+LSV+NAR++AKHYVYIGDPAQLPAPR LL+KG+LE Sbjct 5743 TINALPELVTDIVVVDEVSMLTNYELSVINARIKAKHYVYIGDPAQLPAPRVLLSKGSLE 5802 Query 419 PEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKG 478 P +FNS+ ++M +GPD+FLG C RCP EIV+TVSALVYDNKLKA D S+ CFK+++KG Sbjct 5803 PRHFNSITKIMCCLGPDIFLGNCYRCPKEIVETVSALVYDNKLKAKNDNSSLCFKVYFKG 5862 Query 479 VITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQG 538 TH+ SSA+N QI ++ +FL NP W AVFISPYNSQN VA ++LG+ TQTVDS+QG Sbjct 5863 QTTHESSSAVNIQQIYLISKFLKANPVWNSAVFISPYNSQNYVAKRVLGVQTQTVDSAQG 5922 Query 539 SEYDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIMSDRDLYDKLQFTSLEIPRRNVA 598 SEYDYVI++QT ETAHS NVNRFNVAITRAK GI C+MS+ L++ L F +L + + Sbjct 5923 SEYDYVIYSQTAETAHSVNVNRFNVAITRAKKGIFCVMSNMQLFESLNFITLPLDKIQNQ 5982 Query 599 TL 600 TL Sbjct 5983 TL 5984 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Human coronavirus HKU1 (isolate N5)] Sequence ID: P0C6X4.1 Length: 7132 Range 1: 5336 to 5934 Score:845 bits(2182), Expect:0.0, Method:Compositional matrix adjust., Identities:394/602(65%), Positives:484/602(80%), Gaps:5/602(0%) Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60 +VGACV+C+SQTSLRCG+CIR+P LCCKCCYDHV++T+HK VLSV+PYVCNAP CDV+DV Sbjct 5336 SVGACVVCSSQTSLRCGSCIRKPLLCCKCCYDHVMATNHKYVLSVSPYVCNAPNCDVSDV 5395 Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120 T+LYLGGMSYYC++HKP SF L NG VFGLYK +C GS + DFN IA+C WT DY Sbjct 5396 TKLYLGGMSYYCENHKPHYSFKLVMNGMVFGLYKQSCTGSPYIDDFNKIASCKWTEVDDY 5455 Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180 +LAN C ERLKLFAAET KATEE FK SY AT++E++SDRE+ L WE GK +PPLN+NY Sbjct 5456 VLANECIERLKLFAAETQKATEEAFKQSYASATIQEIVSDREVILCWETGKVKPPLNKNY 5515 Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240 VFTGY T K +GEY F+K + + V YR TTTYKL++GD FVLTSH+V LSAPTL Sbjct 5516 VFTGYHFTSTGKTVLGEYVFDKSELTNGVYYRATTTYKLSIGDVFVLTSHSVASLSAPTL 5575 Query 241 VPQEHY--VRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALY 298 VPQE+Y +R + +Y ++ F +NVANYQ +GM++Y T+QGPPGTGKSH AIGLA+Y Sbjct 5576 VPQENYASIRFSSVY---SVPLVFQNNVANYQHIGMKRYCTVQGPPGTGKSHLAIGLAVY 5632 Query 299 YPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFC 358 Y +AR+VYTA SHAAVDALCEKA K+L I+ C+RIIPA+ RV+C+DKFK+N T +YVF Sbjct 5633 YYTARVVYTAASHAAVDALCEKAYKFLNINDCTRIIPAKVRVDCYDKFKINDTTCKYVFT 5692 Query 359 TVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLE 418 T+NALPE DIVV DE+SM TNY+LSV+NAR++AKHYVYIGDPAQLPAPR LL+KG+LE Sbjct 5693 TINALPELVTDIVVVDEVSMLTNYELSVINARIKAKHYVYIGDPAQLPAPRVLLSKGSLE 5752 Query 419 PEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKG 478 P +FNS+ ++M +GPD+FLG C RCP EIV+TVSALVYDNKLKA D S+ CFK+++KG Sbjct 5753 PRHFNSITKIMCCLGPDIFLGNCYRCPKEIVETVSALVYDNKLKAKNDNSSLCFKVYFKG 5812 Query 479 VITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQG 538 TH+ SSA+N QI ++ +FL NP W AVFISPYNSQN VA ++LG+ TQTVDS+QG Sbjct 5813 QTTHESSSAVNIQQIYLISKFLKANPVWNSAVFISPYNSQNYVAKRVLGVQTQTVDSAQG 5872 Query 539 SEYDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIMSDRDLYDKLQFTSLEIPRRNVA 598 SEYDYVI++QT ETAHS NVNRFNVAITRAK GI C+MS+ L++ L F +L + + Sbjct 5873 SEYDYVIYSQTAETAHSVNVNRFNVAITRAKKGIFCVMSNMQLFESLNFITLPLDKIQNQ 5932 Query 599 TL 600 TL Sbjct 5933 TL 5934 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p41; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Porcine transmissible gastroenteritis coronavirus strain Purdue] Sequence ID: P0C6Y5.1 Length: 6684 Range 1: 4928 to 5519 Score:786 bits(2030), Expect:0.0, Method:Compositional matrix adjust., Identities:367/592(62%), Positives:455/592(76%), Gaps:1/592(0%) Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60 A G CV+C SQT LRCG C+RRP LC KC YDHV+ T HK ++S+ PYVC+ GC+V DV Sbjct 4928 AAGMCVVCGSQTVLRCGDCLRRPLLCTKCAYDHVMGTKHKFIMSITPYVCSFNGCNVNDV 4987 Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120 T+L+LGG+SYYC +HKP +SFPLCANG VFGLYK++ VGS+ V DFN +A DWTN DY Sbjct 4988 TKLFLGGLSYYCMNHKPQLSFPLCANGNVFGLYKSSAVGSEAVEDFNKLAVSDWTNVEDY 5047 Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180 LAN E LK+FAAET+KA EE+ K Y A ++EV+ +E+ L WE K +PPLNRN Sbjct 5048 KLANNVKESLKIFAAETVKAKEESVKSEYAYAVLKEVIGPKEIVLQWEASKTKPPLNRNS 5107 Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYG-DAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPT 239 VFT ++++K++K+Q+GE+ FE+ +YG D+V Y+ T+TYKL G FVLTSH V PL AP Sbjct 5108 VFTCFQISKDTKIQLGEFVFEQSEYGSDSVYYKSTSTYKLTPGMIFVLTSHNVSPLKAPI 5167 Query 240 LVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYY 299 LV QE Y I+ LYP NI++ +++ V YQ +G QK++T+QGPPG+GKSH IGL LYY Sbjct 5168 LVNQEKYNTISKLYPVFNIAEAYNTLVPYYQMIGKQKFTTIQGPPGSGKSHCVIGLGLYY 5227 Query 300 PSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCT 359 P ARIVYTACSHAAVDALCEKA K +D+CSRIIP R RV+C+ FK N+T QY+FCT Sbjct 5228 PQARIVYTACSHAAVDALCEKAAKNFNVDRCSRIIPQRIRVDCYTGFKPNNTNAQYLFCT 5287 Query 360 VNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEP 419 VNALPE + DIVV DE+SM TNYDLSV+N+RL KH VY+GDP QLPAPRTL+ KG L+P Sbjct 5288 VNALPEASCDIVVVDEVSMCTNYDLSVINSRLSYKHIVYVGDPQQLPAPRTLINKGVLQP 5347 Query 420 EYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGV 479 + +N V + M T+GPD+FL C RCPAEIV TVSALVY+NK +S QCFKMF KG Sbjct 5348 QDYNVVTKRMCTLGPDVFLHKCYRCPAEIVKTVSALVYENKFVPVNPESKQCFKMFVKGQ 5407 Query 480 ITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGS 539 + + +S+IN Q+ VV+ FL NP WRKAVFISPYNSQN VA ++LGL TQTVDS+QGS Sbjct 5408 VQIESNSSINNKQLEVVKAFLAHNPKWRKAVFISPYNSQNYVARRLLGLQTQTVDSAQGS 5467 Query 540 EYDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIMSDRDLYDKLQFTSLE 591 EYDYVI+TQT++T H+ NVNRFNVAITRAK+GILCIM DR +Y+ L F L+ Sbjct 5468 EYDYVIYTQTSDTQHATNVNRFNVAITRAKVGILCIMCDRTMYENLDFYELK 5519 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; Contains: RecName: Full=Non-structural protein 11; Short=nsp11; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Feline infectious peritonitis virus (strain 79-1146)] Sequence ID: Q98VG9.2 Length: 6709 Range 1: 4953 to 5544 Score:781 bits(2017), Expect:0.0, Method:Compositional matrix adjust., Identities:365/592(62%), Positives:454/592(76%), Gaps:1/592(0%) Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60 A G CV+C SQT LRCG C+RRP LC KC YDHV+ T HK ++S+ PYVC+ GC+V DV Sbjct 4953 AAGMCVVCGSQTVLRCGDCLRRPLLCTKCAYDHVMGTKHKFIMSITPYVCSFNGCNVNDV 5012 Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120 T+L+LGG+SYYC HKP +SFPLCANG VFGLYK++ VGS++V DFN +A DWTN DY Sbjct 5013 TKLFLGGLSYYCMDHKPQLSFPLCANGNVFGLYKSSAVGSEDVEDFNKLAVSDWTNVEDY 5072 Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180 LAN E LK+FAAET+KA EE+ K Y A ++EV+ +E+ L WE K +PPLNRN Sbjct 5073 KLANNVKESLKIFAAETVKAKEESVKSEYAYAILKEVIGPKEIVLQWEASKTKPPLNRNS 5132 Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYG-DAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPT 239 VFT ++++K++K+Q+GE+ FE+ +YG D+V Y+ T+TYKL G FVLTSH V PL A Sbjct 5133 VFTCFQISKDTKIQLGEFVFEQSEYGSDSVYYKSTSTYKLTPGMIFVLTSHNVSPLKATI 5192 Query 240 LVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYY 299 LV QE Y I+ LYP NI++ +++ V YQ +G QK++T+QGPPG+GKSH IGL LYY Sbjct 5193 LVNQEKYNTISKLYPVFNIAEAYNTLVPYYQMIGKQKFTTIQGPPGSGKSHCVIGLGLYY 5252 Query 300 PSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCT 359 P ARIVYTACSHAAVDALCEKA K +D+CSRIIP R RV+C+ FK N+T QY+FCT Sbjct 5253 PQARIVYTACSHAAVDALCEKAAKNFNVDRCSRIIPQRIRVDCYTGFKPNNTNAQYLFCT 5312 Query 360 VNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEP 419 VNALPE + DIVV DE+SM TNYDLSV+N+RL KH VY+GDP QLPAPRTL+ KG L+P Sbjct 5313 VNALPEASCDIVVVDEVSMCTNYDLSVINSRLSYKHIVYVGDPQQLPAPRTLINKGVLQP 5372 Query 420 EYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGV 479 + +N V + + T+GPD+FL C RCPAEIV TVSALVY+NK +S QCFKMF KG Sbjct 5373 QDYNVVTQRVCTLGPDVFLHKCYRCPAEIVKTVSALVYENKFVPVNPESKQCFKMFVKGQ 5432 Query 480 ITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGS 539 + + +S+IN Q+ VV+ FL NP WRKAVFISPYNSQN VA ++LGL TQTVDS+QGS Sbjct 5433 VQIESNSSINNKQLEVVKAFLAHNPKWRKAVFISPYNSQNYVARRLLGLQTQTVDSAQGS 5492 Query 540 EYDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIMSDRDLYDKLQFTSLE 591 EYDYVI+TQT++T H+ NVNRFNVAITRAK+GILCIM DR +Y+ L F L+ Sbjct 5493 EYDYVIYTQTSDTQHATNVNRFNVAITRAKVGILCIMCDRTMYENLDFYELK 5544 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p41; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Human coronavirus NL63] Sequence ID: P0C6X5.1 Length: 6729 Range 1: 4971 to 5570 Score:767 bits(1981), Expect:0.0, Method:Compositional matrix adjust., Identities:366/602(61%), Positives:452/602(75%), Gaps:3/602(0%) Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60 A G CV+C SQT LRCG C+R+P LC KC YDHV T HK +L++ PYVCNA GC V+DV Sbjct 4971 AAGLCVVCGSQTVLRCGDCLRKPMLCTKCAYDHVFGTDHKFILAITPYVCNASGCGVSDV 5030 Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120 +LYLGG++YYC +HKP +SFPLC+ G +FGLYKN+ GS +V FN +AT DWT+ DY Sbjct 5031 KKLYLGGLNYYCTNHKPQLSFPLCSAGNIFGLYKNSATGSLDVEVFNRLATSDWTDVRDY 5090 Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180 LAN + L+LFAAET+KA EE+ K SY AT++EV+ +EL LSWE GK +PPLNRN Sbjct 5091 KLANDVKDTLRLFAAETIKAKEESVKSSYAFATLKEVVGPKELLLSWESGKVKPPLNRNS 5150 Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYG-DAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPT 239 VFT ++++K+SK QIGE+ FEK +YG D V Y+ T T KL G FVLTSH V PL APT Sbjct 5151 VFTCFQISKDSKFQIGEFIFEKVEYGSDTVTYKSTVTTKLVPGMIFVLTSHNVQPLRAPT 5210 Query 240 LVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYY 299 + QE Y I L+P N+SD +++ V YQ +G QK +T+QGPPG+GKSH +IGL LYY Sbjct 5211 IANQEKYSSIYKLHPAFNVSDAYANLVPYYQLIGKQKITTIQGPPGSGKSHCSIGLGLYY 5270 Query 300 PSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCT 359 P ARIV+ AC+HAAVD+LC KA+ IDKC+RIIPARARVEC+ FK N+T QY+F T Sbjct 5271 PGARIVFVACAHAAVDSLCAKAMTVYSIDKCTRIIPARARVECYSGFKPNNTSAQYIFST 5330 Query 360 VNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEP 419 VNALPE ADIVV DE+SM TNYDLSV+N RL KH VY+GDP QLPAPR ++TKG +EP Sbjct 5331 VNALPECNADIVVVDEVSMCTNYDLSVINQRLSYKHIVYVGDPQQLPAPRVMITKGVMEP 5390 Query 420 EYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGV 479 +N V + M IGPD+FL C RCPAEIV+TVS LVY+NK K S QCFK+F+KG Sbjct 5391 VDYNVVTQRMCAIGPDVFLHKCYRCPAEIVNTVSELVYENKFVPVKPASKQCFKVFFKGN 5450 Query 480 ITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGS 539 + D S+INR Q+ +V+ FL +NP+W KAVFISPYNSQN VAS+ LGL QTVDSSQGS Sbjct 5451 VQVDNGSSINRKQLEIVKLFLVKNPSWSKAVFISPYNSQNYVASRFLGLQIQTVDSSQGS 5510 Query 540 EYDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIMSDRDLYDKLQFTSLEIPRRNVAT 599 EYDYVI+ QT++TAH+CNVNRFNVAITRAK GI C+M D+ L+D L+F EI ++ + Sbjct 5511 EYDYVIYAQTSDTAHACNVNRFNVAITRAKKGIFCVMCDKTLFDSLKF--FEIKHADLHS 5568 Query 600 LQ 601 Q Sbjct 5569 SQ 5570 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Scotophilus bat coronavirus 512] Sequence ID: P0C6W0.1 Length: 6793 Range 1: 5039 to 5637 Score:766 bits(1978), Expect:0.0, Method:Compositional matrix adjust., Identities:364/599(61%), Positives:452/599(75%), Gaps:1/599(0%) Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60 + G CV+C+SQT LRCG CIRRP LC KC YDHV+STSHK +L++ PYVC + GC V+DV Sbjct 5039 SAGLCVVCSSQTVLRCGDCIRRPMLCTKCAYDHVVSTSHKFILAITPYVCCSSGCGVSDV 5098 Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120 T+LYLGG+SY+C HKP +SFPLC++G VFGLYKN+ GS +V DFN +AT DWT+ DY Sbjct 5099 TKLYLGGLSYWCVDHKPRLSFPLCSSGNVFGLYKNSATGSPDVDDFNTLATSDWTDVKDY 5158 Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180 LAN + L+LFAAET+KA EE+ K SY AT+ EV+ +EL L WEVGKPRPPL+RN Sbjct 5159 KLANDVKDSLRLFAAETIKAKEESVKSSYACATIHEVVGPKELVLKWEVGKPRPPLSRNS 5218 Query 181 VFTGYRVTKNSKVQIGEYTFEKGDY-GDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPT 239 VFT Y +TKN+K Q+GE+TFEK DY DAV Y+ T T KL G FVLTSH V PL APT Sbjct 5219 VFTCYHITKNTKFQVGEFTFEKLDYDNDAVSYKSTATTKLVPGMVFVLTSHNVQPLRAPT 5278 Query 240 LVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYY 299 ++ QE Y + L P NI +++S+ + YQ +G QK +T+QGPPG+GKSH IGL LY+ Sbjct 5279 IINQERYSTLHKLRPAFNIHEDYSNLIPYYQLIGKQKLTTIQGPPGSGKSHCVIGLGLYF 5338 Query 300 PSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCT 359 P ARIV+TACSHAAVD+LC KA D+CSRIIP +AR+EC+D FK N+T QY+F T Sbjct 5339 PGARIVFTACSHAAVDSLCVKAATAYSSDRCSRIIPQKARIECYDGFKSNNTSAQYLFST 5398 Query 360 VNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEP 419 VNALPE ADI V DE+SM TNYDLSV+N R+ +H VY+GDP QLPAPR ++T+G L P Sbjct 5399 VNALPEVNADICVVDEVSMCTNYDLSVINQRVNYRHIVYVGDPQQLPAPRVMITRGVLVP 5458 Query 420 EYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGV 479 E +N V R M + PD+FL C RCPAEIV+TVS +VY+N+ K +S +CFK++ +G Sbjct 5459 EDYNVVTRRMCVLKPDIFLHKCYRCPAEIVNTVSEMVYENQFVPVKSESKECFKIYCRGN 5518 Query 480 ITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGS 539 + D S+INR Q+ VVR FL +NP W KAVFISPYNSQN VA ++LGL QTVDSSQGS Sbjct 5519 VQVDNGSSINRRQLEVVRMFLAKNPKWAKAVFISPYNSQNYVAGRVLGLQIQTVDSSQGS 5578 Query 540 EYDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIMSDRDLYDKLQFTSLEIPRRNVA 598 EYDYVI+TQT++TAH+ NVNRFNVAITRAK GILCIM DR+L+D L+F L++ V Sbjct 5579 EYDYVIYTQTSDTAHASNVNRFNVAITRAKKGILCIMCDRELFDILKFYELKLSDLQVG 5637 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Porcine epidemic diarrhea virus CV777] Sequence ID: P0C6Y4.1 Length: 6781 Range 1: 5028 to 5620 Score:762 bits(1967), Expect:0.0, Method:Compositional matrix adjust., Identities:368/593(62%), Positives:443/593(74%), Gaps:1/593(0%) Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60 + G CV+C SQT LRCG C+RRP LC KC YDHVI T+HK +L++ PYVC A C V DV Sbjct 5028 SAGLCVVCGSQTVLRCGDCLRRPMLCTKCAYDHVIGTTHKFILAITPYVCCASDCGVNDV 5087 Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120 T+LYLGG+SY+C HKP ++FPLC+ G VFGLYKN+ GS +V DFN IAT DWT+ DY Sbjct 5088 TKLYLGGLSYWCHEHKPRLAFPLCSAGNVFGLYKNSATGSPDVEDFNRIATSDWTDVSDY 5147 Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180 LAN + L+LFAAET+KA EE+ K SY AT+ EV+ +EL L WEVG+P+PPLNRN Sbjct 5148 RLANDVKDSLRLFAAETIKAKEESVKSSYACATLHEVVGPKELLLKWEVGRPKPPLNRNS 5207 Query 181 VFTGYRVTKNSKVQIGEYTFEKGDY-GDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPT 239 VFT Y +TKN+K QIGE+ FEK +Y DAV Y+ T T KL G FVLTSH V PL APT Sbjct 5208 VFTCYHITKNTKFQIGEFVFEKAEYDNDAVTYKTTATTKLVPGMVFVLTSHNVQPLRAPT 5267 Query 240 LVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYY 299 + QE Y I L+P NI + +SS V YQ +G QK +T+QGPPG+GKSH IGL LYY Sbjct 5268 IANQERYSTIHKLHPAFNIPEAYSSLVPYYQLIGKQKITTIQGPPGSGKSHCVIGLGLYY 5327 Query 300 PSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCT 359 P ARIV+TACSHAAVD+LC KA DKCSRIIP RARVEC+D FK N+T QY+F T Sbjct 5328 PGARIVFTACSHAAVDSLCVKASTAYSNDKCSRIIPQRARVECYDGFKSNNTSAQYLFST 5387 Query 360 VNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEP 419 VNALPE ADIVV DE+SM TNYDLSV+N R+ +H VY+GDP QLPAPR ++++GTLEP Sbjct 5388 VNALPECNADIVVVDEVSMCTNYDLSVINQRISYRHVVYVGDPQQLPAPRVMISRGTLEP 5447 Query 420 EYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGV 479 + +N V + M + PD+FL C RCPAEIV TVS +VY+N+ S QCFK+F KG Sbjct 5448 KDYNVVTQRMCALKPDVFLHKCYRCPAEIVRTVSEMVYENQFIPVHPDSKQCFKIFCKGN 5507 Query 480 ITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGS 539 + D S+INR Q+ VVR FL +NP W KAVFISPYNSQN VAS++LGL QTVDSSQGS Sbjct 5508 VQVDNGSSINRRQLDVVRMFLAKNPRWSKAVFISPYNSQNYVASRLLGLQIQTVDSSQGS 5567 Query 540 EYDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIMSDRDLYDKLQFTSLEI 592 EYDYVI+ QT++TAH+ NVNRFNVAITRAK GILCIM DR L+D L+F L++ Sbjct 5568 EYDYVIYAQTSDTAHASNVNRFNVAITRAKKGILCIMCDRSLFDLLKFFELKL 5620 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p41; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Human coronavirus 229E] Sequence ID: P0C6X1.1 Length: 6758 Range 1: 4996 to 5588 Score:761 bits(1965), Expect:0.0, Method:Compositional matrix adjust., Identities:357/593(60%), Positives:448/593(75%), Gaps:1/593(0%) Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60 A G CV+C SQT LRCG C+RRP LC KC YDHV T HK +L++ PYVCN GC+V DV Sbjct 4996 AAGLCVVCGSQTVLRCGDCLRRPMLCTKCAYDHVFGTDHKFILAITPYVCNTSGCNVNDV 5055 Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120 T+LYLGG++YYC HKP +SFPLC+ G VFGLYK++ +GS ++ FN ++T DW++ DY Sbjct 5056 TKLYLGGLNYYCVDHKPHLSFPLCSAGNVFGLYKSSALGSMDIDVFNKLSTSDWSDIRDY 5115 Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180 LAN E L+LFAAET+KA EE+ K SY AT++E++ +EL L WE GK +PPLNRN Sbjct 5116 KLANDAKESLRLFAAETVKAKEESVKSSYAYATLKEIVGPKELLLLWESGKAKPPLNRNS 5175 Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYG-DAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPT 239 VFT +++TK+SK Q+GE+ FEK DYG D V Y+ T T KL G F+LTSH V PL APT Sbjct 5176 VFTCFQITKDSKFQVGEFVFEKVDYGSDTVTYKSTATTKLVPGMLFILTSHNVAPLRAPT 5235 Query 240 LVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYY 299 + QE Y I L+P+ N+SD +++ V YQ +G Q+ +T+QGPPG+GKSH +IG+ +YY Sbjct 5236 MANQEKYSTIYKLHPSFNVSDAYANLVPYYQLIGKQRITTIQGPPGSGKSHCSIGIGVYY 5295 Query 300 PSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCT 359 P ARIV+TACSHAAVD+LC KA+ +DKC+RIIPARARVEC+ FK N+ QYVF T Sbjct 5296 PGARIVFTACSHAAVDSLCAKAVTAYSVDKCTRIIPARARVECYSGFKPNNNSAQYVFST 5355 Query 360 VNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEP 419 VNALPE ADIVV DE+SM TNYDLSV+N R+ KH VY+GDP QLPAPR L++KG +EP Sbjct 5356 VNALPEVNADIVVVDEVSMCTNYDLSVINQRISYKHIVYVGDPQQLPAPRVLISKGVMEP 5415 Query 420 EYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGV 479 +N V + M IGPD+FL C RCPAEIV+TVS LVY+NK K+ S QCFK+F +G Sbjct 5416 IDYNVVTQRMCAIGPDVFLHKCYRCPAEIVNTVSELVYENKFVPVKEASKQCFKIFERGS 5475 Query 480 ITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGS 539 + D S+INR Q+ VV+ F+ +N W KAVFISPYNSQN VA+++LGL TQTVDS+QGS Sbjct 5476 VQVDNGSSINRRQLDVVKRFIHKNSTWSKAVFISPYNSQNYVAARLLGLQTQTVDSAQGS 5535 Query 540 EYDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIMSDRDLYDKLQFTSLEI 592 EYDYVIF QT++TAH+CN NRFNVAITRAK GI CIMSDR L+D L+F + + Sbjct 5536 EYDYVIFAQTSDTAHACNANRFNVAITRAKKGIFCIMSDRTLFDALKFFEITM 5588 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p68; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; AltName: Full=p58; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p39; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16; AltName: Full=p35 [Avian infectious bronchitis virus (strain M41)] Sequence ID: P0C6Y3.1 Length: 6631 Range 1: 4873 to 5470 Score:742 bits(1915), Expect:0.0, Method:Compositional matrix adjust., Identities:353/603(59%), Positives:445/603(73%), Gaps:9/603(1%) Query 3 GACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDVTQ 62 G CV+CNSQT LRCG CIR+PFLCCKCCYDHV+ T HK VLS+NPY+C+ PGC DVT+ Sbjct 4873 GVCVVCNSQTILRCGNCIRKPFLCCKCCYDHVMHTDHKNVLSINPYICSQPGCGEADVTK 4932 Query 63 LYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDYIL 122 LYLGGMSY+C +HKP +S PL +NG VFG+Y+ C GS+NV DFN +AT +W+ YIL Sbjct 4933 LYLGGMSYFCGNHKPKLSIPLVSNGTVFGIYRANCAGSENVDDFNQLATTNWSTVEPYIL 4992 Query 123 ANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNYVF 182 AN C + L+ FAAET+KATEE K + A VREVLSDREL LSWE GK RPPLNRNYVF Sbjct 4993 ANRCVDSLRRFAAETVKATEELHKQQFASAEVREVLSDRELILSWEPGKTRPPLNRNYVF 5052 Query 183 TGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTLVP 242 TG+ T+ SKVQ+G++TFEKG+ D V YR T+T KL+VGD FVLTSH V+ L APTL P Sbjct 5053 TGFHFTRTSKVQLGDFTFEKGEGKDVVYYRATSTAKLSVGDIFVLTSHNVVSLIAPTLCP 5112 Query 243 QEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYPSA 302 Q+ + R L P + + F +N+ Y VG QK +T+QGPPG+GKSHFAIGLA Y+ +A Sbjct 5113 QQTFSRFVNLRPNVMVPACFVNNIPLYHLVGKQKRTTVQGPPGSGKSHFAIGLAAYFSNA 5172 Query 303 RIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTVNA 362 R+V+TACSHAAVDALCEKA K+L +D C+RI+P R ++CF KFK N T ++Y+F T+NA Sbjct 5173 RVVFTACSHAAVDALCEKAFKFLKVDDCTRIVPQRTTIDCFSKFKANDTGKKYIFSTINA 5232 Query 363 LPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYF 422 LPE + DI++ DE+SM TNY+LS +N ++ ++ VY+GDPAQLPAPRTLL G+L P+ + Sbjct 5233 LPEVSCDILLVDEVSMLTNYELSFINGKINYQYVVYVGDPAQLPAPRTLLN-GSLSPKDY 5291 Query 423 NSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGV--- 479 N V LM + PD+FL C RCP EIVDTVS LVYD K A+ +S QCFK+ Sbjct 5292 NVVTNLMVCVKPDIFLAKCYRCPKEIVDTVSTLVYDGKFIANNPESRQCFKVIVNNGNSD 5351 Query 480 ITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGS 539 + H+ SA N Q+ V++F+ RN WR+A FISPYN+ N A ++LGL QTVDSSQGS Sbjct 5352 VGHESGSAYNITQLEFVKDFVCRNKEWREATFISPYNAMNQRAYRMLGLNVQTVDSSQGS 5411 Query 540 EYDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIMSDRD-LYDKLQFTSLEIPRRNVA 598 EYDYVIF T ++ H+ N+NRFNVA+TRAK GIL +M RD LY L+F L+ +VA Sbjct 5412 EYDYVIFCVTADSQHALNINRFNVALTRAKRGILVVMRQRDELYSALKFIELD----SVA 5467 Query 599 TLQ 601 +LQ Sbjct 5468 SLQ 5470 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p68; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; AltName: Full=p58; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p39; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16; AltName: Full=p35 [Avian infectious bronchitis virus (strain Beaudette)] Sequence ID: P0C6Y1.1 Length: 6629 Range 1: 4871 to 5462 Score:740 bits(1910), Expect:0.0, Method:Compositional matrix adjust., Identities:349/593(59%), Positives:442/593(74%), Gaps:5/593(0%) Query 3 GACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDVTQ 62 G CV+CNSQT LRCG CIR+PFLCCKCCYDHV+ T HK VLS+NPY+C+ GC DVT+ Sbjct 4871 GVCVVCNSQTILRCGNCIRKPFLCCKCCYDHVMHTDHKNVLSINPYICSQLGCGEADVTK 4930 Query 63 LYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDYIL 122 LYLGGMSY+C +HKP +S PL +NG VFG+Y+ C GS+NV DFN +AT +W+ YIL Sbjct 4931 LYLGGMSYFCGNHKPKLSIPLVSNGTVFGIYRANCAGSENVDDFNQLATTNWSIVEPYIL 4990 Query 123 ANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNYVF 182 AN C++ L+ FAAET+KATEE K + A VREV SDREL LSWE GK RPPLNRNYVF Sbjct 4991 ANRCSDSLRRFAAETVKATEELHKQQFASAEVREVFSDRELILSWEPGKTRPPLNRNYVF 5050 Query 183 TGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTLVP 242 TGY T+ SKVQ+G++TFEKG+ D V Y+ T+T KL+VGD FVLTSH V+ L APTL P Sbjct 5051 TGYHFTRTSKVQLGDFTFEKGEGKDVVYYKATSTAKLSVGDIFVLTSHNVVSLVAPTLCP 5110 Query 243 QEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYPSA 302 Q+ + R L P + + + F +N+ Y VG QK +T+QGPPG+GKSHFAIGLA+Y+ SA Sbjct 5111 QQTFSRFVNLRPNVMVPECFVNNIPLYHLVGKQKRTTVQGPPGSGKSHFAIGLAVYFSSA 5170 Query 303 RIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTVNA 362 R+V+TACSHAAVDALCEKA K+L +D C+RI+P R V+CF KFK N T ++Y+F T+NA Sbjct 5171 RVVFTACSHAAVDALCEKAFKFLKVDDCTRIVPQRTTVDCFSKFKANDTGKKYIFSTINA 5230 Query 363 LPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYF 422 LPE + DI++ DE+SM TNY+LS +N ++ ++ VY+GDPAQLPAPRTLL G+L P+ + Sbjct 5231 LPEVSCDILLVDEVSMLTNYELSFINGKINYQYVVYVGDPAQLPAPRTLLN-GSLSPKDY 5289 Query 423 NSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGV--- 479 N V LM + PD+FL C RCP EIVDTVS LVYD K A+ +S +CFK+ Sbjct 5290 NVVTNLMVCVKPDIFLAKCYRCPKEIVDTVSTLVYDGKFIANNPESRECFKVIVNNGNSD 5349 Query 480 ITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGS 539 + H+ SA N Q+ V++F+ RN WR+A+FISPYN+ N A ++LGL QTVDSSQGS Sbjct 5350 VGHESGSAYNTTQLEFVKDFVCRNKQWREAIFISPYNAMNQRAYRMLGLNVQTVDSSQGS 5409 Query 540 EYDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIMSDRD-LYDKLQFTSLE 591 EYDYVIF T ++ H+ N+NRFNVA+TRAK GIL +M RD LY L+FT L+ Sbjct 5410 EYDYVIFCVTADSQHALNINRFNVALTRAKRGILVVMRQRDELYSALKFTELD 5462 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p68; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; AltName: Full=p58; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p39; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16; AltName: Full=p35 [Avian infectious bronchitis virus (strain Beaudette CK)] Sequence ID: P0C6Y2.1 Length: 6629 Range 1: 4871 to 5462 Score:740 bits(1910), Expect:0.0, Method:Compositional matrix adjust., Identities:349/593(59%), Positives:442/593(74%), Gaps:5/593(0%) Query 3 GACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDVTQ 62 G CV+CNSQT LRCG CIR+PFLCCKCCYDHV+ T HK VLS+NPY+C+ GC DVT+ Sbjct 4871 GVCVVCNSQTILRCGNCIRKPFLCCKCCYDHVMHTDHKNVLSINPYICSQLGCGEADVTK 4930 Query 63 LYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDYIL 122 LYLGGMSY+C +HKP +S PL +NG VFG+Y+ C GS+NV DFN +AT +W+ YIL Sbjct 4931 LYLGGMSYFCGNHKPKLSIPLVSNGTVFGIYRANCAGSENVDDFNQLATTNWSIVEPYIL 4990 Query 123 ANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNYVF 182 AN C++ L+ FAAET+KATEE K + A VREV SDREL LSWE GK RPPLNRNYVF Sbjct 4991 ANRCSDSLRRFAAETVKATEELHKQQFASAEVREVFSDRELILSWEPGKTRPPLNRNYVF 5050 Query 183 TGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTLVP 242 TGY T+ SKVQ+G++TFEKG+ D V Y+ T+T KL+VGD FVLTSH V+ L APTL P Sbjct 5051 TGYHFTRTSKVQLGDFTFEKGEGKDVVYYKATSTAKLSVGDIFVLTSHNVVSLVAPTLCP 5110 Query 243 QEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYPSA 302 Q+ + R L P + + + F +N+ Y VG QK +T+QGPPG+GKSHFAIGLA+Y+ SA Sbjct 5111 QQTFSRFVNLRPNVMVPECFVNNIPLYHLVGKQKRTTVQGPPGSGKSHFAIGLAVYFSSA 5170 Query 303 RIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTVNA 362 R+V+TACSHAAVDALCEKA K+L +D C+RI+P R V+CF KFK N T ++Y+F T+NA Sbjct 5171 RVVFTACSHAAVDALCEKAFKFLKVDDCTRIVPQRTTVDCFSKFKANDTGKKYIFSTINA 5230 Query 363 LPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYF 422 LPE + DI++ DE+SM TNY+LS +N ++ ++ VY+GDPAQLPAPRTLL G+L P+ + Sbjct 5231 LPEVSCDILLVDEVSMLTNYELSFINGKINYQYVVYVGDPAQLPAPRTLLN-GSLSPKDY 5289 Query 423 NSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGV--- 479 N V LM + PD+FL C RCP EIVDTVS LVYD K A+ +S +CFK+ Sbjct 5290 NVVTNLMVCVKPDIFLAKCYRCPKEIVDTVSTLVYDGKFIANNPESRECFKVIVNNGNSD 5349 Query 480 ITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGS 539 + H+ SA N Q+ V++F+ RN WR+A+FISPYN+ N A ++LGL QTVDSSQGS Sbjct 5350 VGHESGSAYNTTQLEFVKDFVCRNKQWREAIFISPYNAMNQRAYRMLGLNVQTVDSSQGS 5409 Query 540 EYDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIMSDRD-LYDKLQFTSLE 591 EYDYVIF T ++ H+ N+NRFNVA+TRAK GIL +M RD LY L+FT L+ Sbjct 5410 EYDYVIFCVTADSQHALNINRFNVALTRAKRGILVVMRQRDELYSALKFTELD 5462 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Papain-like proteinase; Short=PL-PRO; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; Contains: RecName: Full=3C-like serine proteinase; Short=3CLSP; AltName: Full=M-PRO; AltName: Full=nsp3; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=Non-structural protein 5; Short=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp10; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp11; AltName: Full=p67; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp12; Contains: RecName: Full=Non-structural protein 13; Short=nsp13; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp14; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp15 [Breda virus serotype 1] Sequence ID: P0C6V8.1 Length: 6733 Range 1: 5541 to 5703 Score:51.6 bits(122), Expect:9e-07, Method:Compositional matrix adjust., Identities:48/176(27%), Positives:79/176(44%), Gaps:15/176(8%) Query 280 LQGPPGTGKSHFAIG--LALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPAR 337 + GPPGTGK+ F L+ PS R VY A +H V + EK +D + Sbjct 5541 VMGPPGTGKTTFVYNTYLSKASPSNRFVYCAPTHRLVGDMDEK------VDGAVVVSAYN 5594 Query 338 ARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYV 397 R +K + + + + CT N LP + +++ DE+S+ + + + + K V Sbjct 5595 DRTYRNPVWKKDDSYD-VLLCTHNTLPFIKSAVLIVDEVSLIPPHVMIKI-LSMGFKKVV 5652 Query 398 YIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVS 453 +GDP QL +P K + + F L++ +L C RCP +I+ S Sbjct 5653 LLGDPFQL-SPVYKNHKVHFKYDTF----YLLQLATQKRYLTACYRCPPQILSAFS 5703 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; Contains: RecName: Full=3C-like serine proteinase; Short=3CLSP; AltName: Full=M-PRO; AltName: Full=nsp3; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=Non-structural protein 5; Short=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp9; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp10; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp11; Contains: RecName: Full=Non-structural protein 12; Short=nsp12; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp13; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp14 [White bream virus (strain DF24/00)] Sequence ID: Q008X6.1 Length: 6872 Range 1: 5641 to 5920 Score:50.4 bits(119), Expect:2e-06, Method:Compositional matrix adjust., Identities:66/302(22%), Positives:126/302(41%), Gaps:25/302(8%) Query 274 MQKYSTLQGPPGTGKSHFAIG--LALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCS 331 ++K + + GPPGTGK+ + + + P+ ++ Y A +H V ++ + Sbjct 5641 LKKATFIIGPPGTGKTTYVMKNFIDTASPANKVAYIAPTHKLVQSMDQAIWDKYNHTVSV 5700 Query 332 RIIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARL 391 ++ + ++ + +NS + + T A+ ++FDE++++ + + + Sbjct 5701 SVVKSELNNNKYN-YPLNSATKTIMLGTPGAVCTHAGCTLIFDEVTLSQLNTIINAISVV 5759 Query 392 RAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDT 451 + +++GDP QL P T + +L Y N L + L C RCP+ I Sbjct 5760 KPSQVIFLGDPLQL-GPVTHM--RSLSYSYTN--FPLFQFCNDSRVLSICYRCPSNI--- 5811 Query 452 VSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVF 511 ++ +K + D + + G VS + P + L RN + V Sbjct 5812 -----FNLWVKPYTDSNVRIDPHAAGGDAKIIVSDQCSNPDAYQYVQKLARNNPDK--VL 5864 Query 512 ISPYNSQNAVASKILGLPTQ-TVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKI 570 + Y I+GL T+DSSQG Y + I T + +NR VA++R+ Sbjct 5865 LCNYK------KPIIGLENAVTIDSSQGKTYKHTIVVLLGNTNFTQVINRAIVAMSRSTH 5918 Query 571 GI 572 I Sbjct 5919 SI 5920 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; Contains: RecName: Full=3C-like serine proteinase; Short=3CLSP; AltName: Full=M-PRO; AltName: Full=nsp3; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=Non-structural protein 5; Short=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp10; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp11; AltName: Full=p67; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp12; Contains: RecName: Full=Non-structural protein 13; Short=nsp13; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp14; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp15 [Berne virus] Sequence ID: P0C6V7.1 Length: 6857 Range 1: 5665 to 5827 Score:45.4 bits(106), Expect:7e-05, Method:Compositional matrix adjust., Identities:46/176(26%), Positives:75/176(42%), Gaps:15/176(8%) Query 280 LQGPPGTGKSHFAIGLALYYPSA--RIVYTACSHAAVDALCEKALKYLPIDKCSRIIPAR 337 + GPPGTGK+ F L S+ R VY A +H V + EK + + + Sbjct 5665 VMGPPGTGKTTFVYDTYLSKASSSNRFVYCAPTHRLVGDMDEKVDGAVVVSAYNDRTYRN 5724 Query 338 ARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYV 397 D + V + CT N LP + +++ DE+S+ + + + + K V Sbjct 5725 PVWNKDDSYGV-------LLCTHNTLPFIKSAVLIADEVSLIPPHVMIKI-LSMGFKKVV 5776 Query 398 YIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVS 453 +GDP QL +P K + + F L++ +L C RCP +I+ S Sbjct 5777 LLGDPFQL-SPVYKNHKVHFKYDTF----YLLQLATQKRYLTACYRCPPQILSAFS 5827 >RecName: Full=Replication protein E1; AltName: Full=ATP-dependent helicase E1 [Human papillomavirus type 73] Sequence ID: Q82007.1 Length: 650 Range 1: 476 to 522 Score:32.7 bits(73), Expect:0.38, Method:Compositional matrix adjust., Identities:17/47(36%), Positives:23/47(48%), Gaps:1/47(2%) Query 280 LQGPPGTGKSHFAIGLALYYPSARIVY-TACSHAAVDALCEKALKYL 325 L GPP TGKSHF + L + I Y + SH + L + + L Sbjct 476 LYGPPDTGKSHFGMSLIKFIQGVVISYVNSTSHFWLSPLADAKMALL 522 >RecName: Full=Replication protein E1; AltName: Full=ATP-dependent helicase E1 [Human papillomavirus type 70] Sequence ID: P50765.1 Length: 652 Range 1: 477 to 523 Score:32.3 bits(72), Expect:0.63, Method:Compositional matrix adjust., Identities:16/47(34%), Positives:25/47(53%), Gaps:1/47(2%) Query 280 LQGPPGTGKSHFAIGLALYYPSARIVY-TACSHAAVDALCEKALKYL 325 +QGPP TGKS+F + L + I Y + SH ++ L + + L Sbjct 477 IQGPPNTGKSYFCMSLMHFLQGTVISYVNSTSHFWLEPLADAKVAML 523 >RecName: Full=Replication protein E1; AltName: Full=ATP-dependent helicase E1 [Human papillomavirus type 34] Sequence ID: P36725.1 Length: 647 Range 1: 475 to 519 Score:32.0 bits(71), Expect:0.83, Method:Compositional matrix adjust., Identities:16/45(36%), Positives:22/45(48%), Gaps:1/45(2%) Query 282 GPPGTGKSHFAIGLALYYPSARIVY-TACSHAAVDALCEKALKYL 325 GPP TGKSHF + L + I Y + SH + L + + L Sbjct 475 GPPDTGKSHFGMSLMQFMQGVVISYVNSNSHFWLSPLADAKMALL 519 >RecName: Full=Replication protein E1; AltName: Full=ATP-dependent helicase E1 [Human papillomavirus type 54] Sequence ID: Q81020.1 Length: 633 Range 1: 458 to 504 Score:30.4 bits(67), Expect:2.3, Method:Compositional matrix adjust., Identities:16/47(34%), Positives:25/47(53%), Gaps:1/47(2%) Query 280 LQGPPGTGKSHFAIGLALYYPSARIVY-TACSHAAVDALCEKALKYL 325 L GPP TGKS+FA+ L + + Y + SH ++ L + + L Sbjct 458 LYGPPDTGKSNFAMSLISFLGGVVLSYVNSSSHFWLEPLADAKIAML 504 >RecName: Full=Replication protein E1; AltName: Full=ATP-dependent helicase E1 [Human papillomavirus type 39] Sequence ID: P24829.1 Length: 647 Range 1: 474 to 518 Score:30.0 bits(66), Expect:2.8, Method:Compositional matrix adjust., Identities:16/45(36%), Positives:22/45(48%), Gaps:1/45(2%) Query 282 GPPGTGKSHFAIGLALYYPSARIVY-TACSHAAVDALCEKALKYL 325 GP TGKSHF + L + I Y + SH ++ L + L L Sbjct 474 GPANTGKSHFCMSLMHFLQGTVISYVNSTSHFWLEPLADAKLAML 518 >RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Nsp1; Contains: RecName: Full=Nsp1-alpha papain-like cysteine proteinase; AltName: Full=PCP1-alpha; Contains: RecName: Full=Nsp1-beta papain-like cysteine proteinase; AltName: Full=PCP1-beta; Contains: RecName: Full=Nsp2 cysteine proteinase; AltName: Full=CP2; Short=CP; Contains: RecName: Full=Non-structural protein 3; Short=Nsp3; Contains: RecName: Full=3C-like serine proteinase; Short=3CLSP; AltName: Full=Nsp4; Contains: RecName: Full=Non-structural protein 5-6-7; Short=Nsp5-6-7; Contains: RecName: Full=Non-structural protein 5; Short=Nsp5; Contains: RecName: Full=Non-structural protein 6; Short=Nsp6; Contains: RecName: Full=Non-structural protein 7-alpha; Short=Nsp7-alpha; Contains: RecName: Full=Non-structural protein 7-beta; Short=Nsp7-beta; Contains: RecName: Full=Non-structural protein 8; Short=Nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=Nsp9; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=Nsp10; Contains: RecName: Full=Non-structural protein 11; Short=Nsp11; Contains: RecName: Full=Non-structural protein 12; Short=Nsp12 [PRRSV HB-1(sh)/2002] Sequence ID: Q8B912.3 Length: 3961 Range 1: 3293 to 3533 Score:29.6 bits(65), Expect:4.6, Method:Compositional matrix adjust., Identities:72/314(23%), Positives:110/314(35%), Gaps:75/314(23%) Query 282 GPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVE 341 GPPG GK+H+ L ++YT +D + +AL C +PA ++ Sbjct 3293 GPPGAGKTHW---LLQQVQDGDVIYTPTHQTMLDMI--RAL-----GTCRFNVPAGTTLQ 3342 Query 342 CFDKFKVNSTLEQYVFCTVNAL-PETTADIVVFDEISMATNYDLSVVNARLRAKHYVY-I 399 F S +V P + DE + + D+ RL +K + + Sbjct 3343 ----FPAPSRTGPWVRILAGGWCPGKNS---FLDEAAYCNHLDV----LRLLSKTTLTCL 3391 Query 400 GDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDN 459 GD Q L P F+S C + I P L T R I D + Sbjct 3392 GDFKQ------------LHPVGFDSHCYVFD-IMPQTQLKTIWRFGQNICDAIQ------ 3432 Query 460 KLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQN 519 ++DK + S +N ++ V + + R ++PY+ Sbjct 3433 --PDYRDK----------------LVSMVNTTRVTYVEKPV------RYGQVLTPYHRDR 3468 Query 520 AVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIMSDR 579 + T+DSSQG+ +D V T T S N R VAITRA+ I R Sbjct 3469 EDGAI-------TIDSSQGATFDVV--TLHLPTKDSLNRQRALVAITRARHAIFVYDPHR 3519 Query 580 DLYDKLQFTSLEIP 593 L + P Sbjct 3520 QLQSMFDLPAKGTP 3533 >RecName: Full=Uncharacterized protein R530 [Acanthamoeba polyphaga mimivirus] Sequence ID: Q5UQ92.1 Length: 494 Range 1: 120 to 165 Score:28.9 bits(63), Expect:6.7, Method:Compositional matrix adjust., Identities:16/46(35%), Positives:24/46(52%), Gaps:2/46(4%) Query 363 LPETTADIVVFDEISMATNYDLSVVNA--RLRAKHYVYIGDPAQLP 406 L + ++VV DE SM + + +N L +Y+GDP QLP Sbjct 120 LKNISKNLVVIDECSMISQEMVDELNKYINLYPIKIIYMGDPKQLP 165 >RecName: Full=Replication protein E1; AltName: Full=ATP-dependent helicase E1 [Alphapapillomavirus 12] Sequence ID: P22154.1 Length: 625 Range 1: 451 to 497 Score:28.5 bits(62), Expect:8.2, Method:Compositional matrix adjust., Identities:16/47(34%), Positives:24/47(51%), Gaps:1/47(2%) Query 280 LQGPPGTGKSHFAIGLALYYPSARIVY-TACSHAAVDALCEKALKYL 325 L GPP TGKS+F + L + + I Y + SH + L + + L Sbjct 451 LFGPPNTGKSYFGMSLIHFLQGSIISYVNSNSHFWLQPLADAKVAML 497 >RecName: Full=Replication protein E1; AltName: Full=ATP-dependent helicase E1 [Human papillomavirus type 51] Sequence ID: P26544.1 Length: 634 Range 1: 463 to 507 Score:28.5 bits(62), Expect:9.8, Method:Compositional matrix adjust., Identities:16/45(36%), Positives:23/45(51%), Gaps:1/45(2%) Query 282 GPPGTGKSHFAIGLALYYPSARIVY-TACSHAAVDALCEKALKYL 325 GPP TGKS FA+ L + + I Y + SH + L + + L Sbjct 463 GPPNTGKSLFAMSLMKFMQGSIISYVNSGSHFWLQPLEDAKIALL 507 >RecName: Full=Replication protein E1; AltName: Full=ATP-dependent helicase E1 [Human papillomavirus type 26] Sequence ID: P36722.1 Length: 638 Range 1: 467 to 491 Score:28.5 bits(62), Expect:9.9, Method:Compositional matrix adjust., Identities:11/25(44%), Positives:14/25(56%), Gaps:0/25(0%) Query 282 GPPGTGKSHFAIGLALYYPSARIVY 306 GPP TGKS FA+ + + I Y Sbjct 467 GPPNTGKSQFAMSFIKFMQGSVISY 491