TBLASTN 2.2.25+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: gt_genome.fasta
           1 sequences; 3,550,319 total letters



Query= sp|P37552|RIDA_BACSU Enamine/imine deaminase OS=Bacillus subtilis
(strain 168) GN=yabJ PE=1 SV=3

Length=125
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  CP000557 CP000557.1 Geobacillus thermodenitrificans NG80-2, com...   204    1e-54


> CP000557 CP000557.1 Geobacillus thermodenitrificans NG80-2, complete 
genome.
Length=3550319

 Score =  204 bits (520),  Expect = 1e-54, Method: Compositional matrix adjust.
 Identities = 97/124 (79%), Positives = 106/124 (86%), Gaps = 0/124 (0%)
 Frame = +3

Query  1      MTKAVHTKHAPAAIGPYSQGIIVNNMFYSSGQIPLTPSGEMVNGDIKEQTHQVFSNLKAV  60
              + + V TK+AP AIGPYSQGIIVNNMFYSSGQIPLTP GE+V GDI+ QTHQVF NLKAV
Sbjct  52089  LMRKVETKNAPQAIGPYSQGIIVNNMFYSSGQIPLTPEGELVKGDIQAQTHQVFQNLKAV  52268

Query  61     LEEAGASFETVVKATVFIADMEQFAEVNEVYGQYFDTHKPARSCVEVARLPKDALVEIEV  120
              LE AGAS ETVVK TVFI +M+ FA +NEVY QYF  HKPARSCVEVARLPKD LVEIEV
Sbjct  52269  LEAAGASLETVVKTTVFIKNMDDFAAMNEVYSQYFPNHKPARSCVEVARLPKDVLVEIEV  52448

Query  121    IALV  124
              +ALV
Sbjct  52449  VALV  52460



Lambda     K      H
   0.316    0.131    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 60351615


  Database: gt_genome.fasta
    Posted date:  Oct 20, 2012  5:52 PM
  Number of letters in database: 3,550,319
  Number of sequences in database:  1



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40