REM -------------------------------------------------------------------- 132L REM 132L REM STRIDE: Knowledge-based secondary structure assignment 132L REM Please cite: D.Frishman & P.Argos, Proteins XX, XXX-XXX, 1995 132L REM 132L REM Residue accessible surface area calculation 132L REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 132L REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 132L REM 132L REM ------------------------ General information ----------------------- 132L REM 132L HDR HYDROLASE(O-GLYCOSYL) 02-JUN-93 132L 132L CMP MOL_ID: 1; 132L CMP MOLECULE: HEN EGG WHITE LYSOZYME; 132L CMP CHAIN: A; 132L CMP EC: 3.2.1.17; 132L CMP ENGINEERED: YES 132L SRC MOL_ID: 1; 132L SRC ORGANISM_SCIENTIFIC: GALLUS GALLUS; 132L SRC ORGANISM_COMMON: CHICKEN; 132L SRC ORGANISM_TAXID: 9031; 132L SRC TISSUE: EGG WHITE 132L AUT I.RAYMENT,W.R.RYPNIEWSKI,H.M.HOLDEN 132L REM 132L REM -------------------- Secondary structure summary ------------------- 132L REM 132L CHN /home/proj/stride/tmp/tmp3PClDepdb A 132L REM 132L REM . . . . . 132L SEQ 1 VFGRCELAAAMRHGLDNYRGYSLGNWVCAAFESNFNTQATNRNTDGSTDY 50 132L STR HHHHHHHGGG TTTGGG HHHHHHHGGGTTTTTTTEEETTTT EEE 132L REM 132L REM . . . . . 132L SEQ 51 GILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKIVSDGNG 100 132L STR TTTTEETTTTEETTTTTTT TTTTEEGGGGGTTTHHHHHHHGGGGG TT 132L REM 132L REM . . 132L SEQ 101 MNAWVAWRNRCGTDVQAWIRGCRL 124 132L STR TTTTHHHHHHHTT GGGGGTTT 132L REM 132L REM 132L REM 132L LOC AlphaHelix ARG 5 A ALA 11 A 132L LOC AlphaHelix LEU 25 A ALA 31 A 132L LOC AlphaHelix ILE 88 A CYS 94 A 132L LOC AlphaHelix VAL 109 A CYS 115 A 132L LOC 310Helix MET 12 A HIS 15 A 132L LOC 310Helix TYR 20 A GLY 22 A 132L LOC 310Helix ALA 32 A GLU 35 A 132L LOC 310Helix CYS 80 A LEU 84 A 132L LOC 310Helix ALA 95 A SER 100 A 132L LOC 310Helix VAL 120 A ILE 124 A 132L LOC Strand THR 43 A ARG 45 A 132L LOC Strand THR 51 A TYR 53 A 132L LOC Strand ILE 58 A ASN 59 A 132L LOC Strand CYS 64 A ASN 65 A 132L LOC Strand ILE 78 A PRO 79 A 132L LOC TurnII LEU 17 A TYR 20 A 132L LOC TurnI' SER 36 A ASN 39 A 132L LOC TurnI ASN 39 A ALA 42 A 132L LOC TurnI ASN 46 A GLY 49 A 132L LOC TurnI GLY 54 A GLN 57 A 132L LOC TurnI ASN 59 A TRP 62 A 132L LOC TurnI SER 60 A TRP 63 A 132L LOC TurnIV ASP 66 A THR 69 A 132L LOC TurnII THR 69 A SER 72 A 132L LOC TurnI ASN 74 A ASN 77 A 132L LOC TurnVIII SER 85 A ILE 88 A 132L LOC TurnII' ASN 103 A ASN 106 A 132L LOC TurnI GLY 104 A ALA 107 A 132L LOC TurnI MET 105 A TRP 108 A 132L LOC TurnVIII ASN 106 A VAL 109 A 132L LOC TurnII ILE 124 A CYS 127 A 132L LOC GammaClassic CYS 115 A THR 118 A 132L LOC Disulfide CYS 6 A CYS 127 A PDB 132L LOC Disulfide CYS 30 A CYS 115 A PDB 132L LOC Disulfide CYS 64 A CYS 80 A PDB 132L LOC Disulfide CYS 76 A CYS 94 A PDB 132L REM 132L REM --------------- Detailed secondary structure assignment------------- 132L REM 132L REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 132L ASG VAL A 2 1 C Coil 360.00 116.45 121.6 132L ASG PHE A 3 2 C Coil -82.47 162.89 35.7 132L ASG GLY A 4 3 C Coil -90.63 156.49 32.1 132L ASG ARG A 5 4 H AlphaHelix -51.96 -59.53 89.7 132L ASG CYS A 6 5 H AlphaHelix -68.14 -32.15 40.7 132L ASG GLU A 7 6 H AlphaHelix -60.57 -44.10 114.6 132L ASG LEU A 8 7 H AlphaHelix -69.51 -42.43 0.0 132L ASG ALA A 9 8 H AlphaHelix -53.07 -48.39 1.8 132L ASG ALA A 10 9 H AlphaHelix -62.70 -45.18 28.8 132L ASG ALA A 11 10 H AlphaHelix -60.90 -42.96 6.6 132L ASG MET A 12 11 G 310Helix -67.75 360.00 4.0 132L ASG ARG A 14 12 G 310Helix 360.00 -34.18 211.5 132L ASG HIS A 15 13 G 310Helix -87.69 8.25 73.6 132L ASG GLY A 16 14 C Coil 75.41 32.64 51.0 132L ASG LEU A 17 15 T Turn -86.85 -18.74 6.4 132L ASG ASP A 18 16 T Turn -62.50 114.89 89.7 132L ASG ASN A 19 17 T Turn 67.26 15.88 93.6 132L ASG TYR A 20 18 G 310Helix -63.78 127.28 72.0 132L ASG ARG A 21 19 G 310Helix 54.30 26.79 152.1 132L ASG GLY A 22 20 G 310Helix 90.13 1.22 61.9 132L ASG TYR A 23 21 C Coil -100.59 110.78 53.1 132L ASG SER A 24 22 C Coil -59.52 155.21 35.4 132L ASG LEU A 25 23 H AlphaHelix -46.93 -42.86 11.4 132L ASG GLY A 26 24 H AlphaHelix -54.02 -34.24 0.7 132L ASG ASN A 27 25 H AlphaHelix -55.38 -50.42 18.4 132L ASG TRP A 28 26 H AlphaHelix -65.02 -37.58 0.0 132L ASG VAL A 29 27 H AlphaHelix -66.75 -48.81 0.5 132L ASG CYS A 30 28 H AlphaHelix -58.92 -42.83 0.2 132L ASG ALA A 31 29 H AlphaHelix -58.02 -52.13 0.0 132L ASG ALA A 32 30 G 310Helix -59.36 360.00 0.0 132L ASG PHE A 34 31 G 310Helix 360.00 -24.31 86.1 132L ASG GLU A 35 32 G 310Helix -79.61 -45.96 35.1 132L ASG SER A 36 33 T Turn -130.44 -1.56 11.1 132L ASG ASN A 37 34 T Turn 61.05 33.49 133.8 132L ASG PHE A 38 35 T Turn 66.38 19.96 30.7 132L ASG ASN A 39 36 T Turn -99.79 120.32 56.5 132L ASG THR A 40 37 T Turn -70.07 -17.70 15.0 132L ASG GLN A 41 38 T Turn -96.73 -3.32 120.6 132L ASG ALA A 42 39 T Turn -60.23 138.22 22.7 132L ASG THR A 43 40 E Strand -142.32 148.62 69.4 132L ASG ASN A 44 41 E Strand -141.14 126.42 77.5 132L ASG ARG A 45 42 E Strand -82.92 135.47 180.5 132L ASG ASN A 46 43 T Turn -109.25 153.67 53.7 132L ASG THR A 47 44 T Turn -59.79 -30.09 157.4 132L ASG ASP A 48 45 T Turn -75.62 5.39 65.6 132L ASG GLY A 49 46 T Turn 94.87 -11.69 27.7 132L ASG SER A 50 47 C Coil -85.81 170.12 0.0 132L ASG THR A 51 48 E Strand -138.02 147.81 1.0 132L ASG ASP A 52 49 E Strand -101.39 127.54 30.5 132L ASG TYR A 53 50 E Strand -115.97 132.00 18.4 132L ASG GLY A 54 51 T Turn 78.53 -169.41 0.0 132L ASG ILE A 55 52 T Turn -52.93 -34.01 3.6 132L ASG LEU A 56 53 T Turn -109.36 11.66 0.4 132L ASG GLN A 57 54 T Turn 47.32 53.47 9.9 132L ASG ILE A 58 55 E Strand -74.43 126.26 1.5 132L ASG ASN A 59 56 E Strand -80.15 136.62 25.3 132L ASG SER A 60 57 T Turn -76.32 -7.66 0.0 132L ASG ARG A 61 58 T Turn -77.16 -44.02 95.0 132L ASG TRP A 62 59 T Turn -104.14 -39.56 91.4 132L ASG TRP A 63 60 T Turn -93.52 -46.23 37.5 132L ASG CYS A 64 61 E Strand -129.92 161.81 0.0 132L ASG ASN A 65 62 E Strand -104.82 127.64 62.1 132L ASG ASP A 66 63 T Turn -111.01 9.64 30.3 132L ASG GLY A 67 64 T Turn 68.03 4.21 66.1 132L ASG ARG A 68 65 T Turn -140.18 13.51 123.3 132L ASG THR A 69 66 T Turn -110.84 117.27 10.7 132L ASG PRO A 70 67 T Turn -68.88 139.08 92.3 132L ASG GLY A 71 68 T Turn 78.07 28.44 56.5 132L ASG SER A 72 69 T Turn -67.62 128.74 40.0 132L ASG ARG A 73 70 C Coil -103.33 -25.13 165.6 132L ASG ASN A 74 71 T Turn 49.20 53.25 41.3 132L ASG LEU A 75 72 T Turn -68.29 -18.86 71.2 132L ASG CYS A 76 73 T Turn -89.00 -9.54 10.3 132L ASG ASN A 77 74 T Turn 58.94 44.01 124.5 132L ASG ILE A 78 75 E Strand -144.09 152.70 41.3 132L ASG PRO A 79 76 E Strand -70.62 139.84 72.8 132L ASG CYS A 80 77 G 310Helix -58.60 -29.52 0.4 132L ASG SER A 81 78 G 310Helix -54.63 -33.43 91.0 132L ASG ALA A 82 79 G 310Helix -64.74 -23.16 35.4 132L ASG LEU A 83 80 G 310Helix -83.77 2.41 2.2 132L ASG LEU A 84 81 G 310Helix -107.06 14.43 40.2 132L ASG SER A 85 82 T Turn -74.38 155.45 55.1 132L ASG SER A 86 83 T Turn -73.69 -15.95 94.3 132L ASG ASP A 87 84 T Turn -92.11 124.27 95.2 132L ASG ILE A 88 85 H AlphaHelix -79.30 -4.46 7.5 132L ASG THR A 89 86 H AlphaHelix -45.78 -54.50 44.7 132L ASG ALA A 90 87 H AlphaHelix -59.05 -42.63 28.8 132L ASG SER A 91 88 H AlphaHelix -62.22 -45.30 4.0 132L ASG VAL A 92 89 H AlphaHelix -65.58 -45.30 8.8 132L ASG ASN A 93 90 H AlphaHelix -60.20 -41.63 104.9 132L ASG CYS A 94 91 H AlphaHelix -68.07 -38.28 3.4 132L ASG ALA A 95 92 G 310Helix -59.94 360.00 2.5 132L ASG LYS A 97 93 G 310Helix 360.00 -46.25 93.2 132L ASG ILE A 98 94 G 310Helix -55.08 -51.98 7.5 132L ASG VAL A 99 95 G 310Helix -69.83 -29.95 7.2 132L ASG SER A 100 96 G 310Helix -74.74 -27.00 45.7 132L ASG ASP A 101 97 C Coil -89.43 19.22 98.7 132L ASG GLY A 102 98 C Coil 160.51 -113.29 61.8 132L ASG ASN A 103 99 T Turn -67.07 8.94 108.2 132L ASG GLY A 104 100 T Turn 64.00 -127.61 7.3 132L ASG MET A 105 101 T Turn -85.95 1.97 0.0 132L ASG ASN A 106 102 T Turn -65.37 -16.86 50.0 132L ASG ALA A 107 103 T Turn -60.64 -24.83 48.2 132L ASG TRP A 108 104 T Turn -98.48 110.59 6.4 132L ASG VAL A 109 105 H AlphaHelix -57.49 -46.12 70.0 132L ASG ALA A 110 106 H AlphaHelix -62.97 -32.52 5.0 132L ASG TRP A 111 107 H AlphaHelix -67.21 -51.51 38.3 132L ASG ARG A 112 108 H AlphaHelix -60.58 -38.82 125.5 132L ASG ASN A 113 109 H AlphaHelix -85.00 -32.75 124.5 132L ASG ARG A 114 110 H AlphaHelix -117.67 -9.40 137.8 132L ASG CYS A 115 111 H AlphaHelix -113.31 360.00 5.6 132L ASG GLY A 117 112 T Turn 360.00 -6.99 117.8 132L ASG THR A 118 113 T Turn -110.32 170.85 79.8 132L ASG ASP A 119 114 C Coil -77.52 91.68 106.6 132L ASG VAL A 120 115 G 310Helix -71.76 -19.15 16.1 132L ASG GLN A 121 116 G 310Helix -62.50 -19.65 128.0 132L ASG ALA A 122 117 G 310Helix -63.20 -21.78 29.0 132L ASG TRP A 123 118 G 310Helix -71.08 -21.14 71.4 132L ASG ILE A 124 119 G 310Helix -108.48 6.46 31.0 132L ASG ARG A 125 120 T Turn -60.06 128.96 166.9 132L ASG GLY A 126 121 T Turn 79.70 9.70 50.7 132L ASG CYS A 127 122 T Turn -82.06 -31.00 22.3 132L ASG ARG A 128 123 C Coil -89.32 -39.38 149.8 132L ASG LEU A 129 124 C Coil -93.41 360.00 214.1 132L