RID: A4Z6S5C101N Job Title:POLN_AURAV Q86924 mature protein 1..539 Program: BLASTP Query: POLN_AURAV Q86924 mature protein 1..539 mRNA-capnzyme nsP1 (2.1.1.- {ECO:0000250|UniProtKB:P27282}) (2.7.7.- {ECO:0000250|UniProtKB:P03317}) (Non-structural protein 1) (Protease nsP2) (3.1.3.33 {ECO:0000250|UniProtKB:P08411}) (3.4.22.- {ECO:0000250|UniProtKB:Q8JUX6}) (3.6.1.15 {ECO:0000250|UniProtKB:Q8JUX6}) (3.6.4.13 {ECO:0000250|UniProtKB:Q8JUX6}) (Non-structural protein 2) (nsP2) (Non-structural protein 3 ID: lcl|Query_42011(amino acid) Length: 536 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Aura virus NA 44158 1119 1119 100% 0.0 100.00 2499 Q86924.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Ockelbo virus NA 31699 872 872 100% 0.0 76.35 2515 P27283.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sindbis virus NA 11034 868 868 100% 0.0 75.79 2513 P03317.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Semliki Fore... NA 11033 716 716 98% 0.0 63.14 2432 P08411.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Getah virus NA 59300 692 692 87% 0.0 67.16 2467 Q5Y389.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sagiyama virus NA 59303 691 691 87% 0.0 67.16 2467 Q9JGL0.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Ross river v... NA 11031 680 680 88% 0.0 64.98 2480 P13887.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Mayaro virus... NA 374990 677 677 98% 0.0 61.06 2437 Q8QZ73.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... O'nyong-nyon... NA 11028 669 669 98% 0.0 60.53 2514 P13886.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... O'nyong-nyon... NA 374989 667 667 98% 0.0 60.34 2513 O90368.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Igbo Ora virus NA 79899 666 666 98% 0.0 60.15 2513 O90370.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Chikungunya ... NA 371095 661 661 97% 0.0 61.22 2474 Q5XXP4.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36385 657 657 96% 0.0 59.96 2493 P36328.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 11038 656 656 96% 0.0 60.15 2493 P27282.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36382 654 654 96% 0.0 59.77 2485 P36327.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Chikungunya ... NA 371094 654 654 97% 0.0 60.65 2474 Q8JUX6.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Barmah Fores... NA 11020 649 649 96% 0.0 59.54 2411 P87515.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36384 647 647 98% 0.0 57.95 2499 Q9WJC7.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 376610 644 644 98% 0.0 57.58 2497 Q8V294.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Western equi... NA 11039 643 643 99% 0.0 60.37 2467 P13896.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374597 640 640 96% 0.0 61.20 2474 Q306W8.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374598 639 639 96% 0.0 61.15 2494 Q4QXJ8.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374596 637 637 96% 0.0 61.00 2471 Q306W6.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sleeping dis... NA 78540 407 407 98% 4e-125 42.96 2593 Q8QL53.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Salmon pancr... NA 84589 405 405 95% 2e-124 42.75 2601 Q8JJX1.1 Alignments: >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Aura virus] Sequence ID: Q86924.3 Length: 2499 Range 1: 1 to 536 Score:1119 bits(2895), Expect:0.0, Method:Compositional matrix adjust., Identities:536/536(100%), Positives:536/536(100%), Gaps:0/536(0%) Query 1 MEKPTVHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPTS 60 MEKPTVHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPTS Sbjct 1 MEKPTVHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPTS 60 Query 61 VTILDIGSAPARRMYSEHKYHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLAD 120 VTILDIGSAPARRMYSEHKYHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLAD Sbjct 61 VTILDIGSAPARRMYSEHKYHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLAD 120 Query 121 LKSVLESPDAETGTICFHNDVICRTTAEVSVMQNVYINAPSTIYHQALKGVRKLYWIGFD 180 LKSVLESPDAETGTICFHNDVICRTTAEVSVMQNVYINAPSTIYHQALKGVRKLYWIGFD Sbjct 121 LKSVLESPDAETGTICFHNDVICRTTAEVSVMQNVYINAPSTIYHQALKGVRKLYWIGFD 180 Query 181 TTQFMFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTNV 240 TTQFMFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTNV Sbjct 181 TTQFMFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTNV 240 Query 241 YFSVGSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGITGR 300 YFSVGSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGITGR Sbjct 241 YFSVGSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGITGR 300 Query 301 VNRYTVTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDAQKLL 360 VNRYTVTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDAQKLL Sbjct 301 VNRYTVTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDAQKLL 360 Query 361 VGLNQRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKLAFGC 420 VGLNQRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKLAFGC Sbjct 361 VGLNQRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKLAFGC 420 Query 421 LWAFKTKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTTSLPMSLRQKVKLLLVKKTNKP 480 LWAFKTKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTTSLPMSLRQKVKLLLVKKTNKP Sbjct 421 LWAFKTKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTTSLPMSLRQKVKLLLVKKTNKP 480 Query 481 VVTITDTAVKNAQEAYNEAVETAEAEEKAKALPPLKPTAPPVAEDVKCEVTDLVDD 536 VVTITDTAVKNAQEAYNEAVETAEAEEKAKALPPLKPTAPPVAEDVKCEVTDLVDD Sbjct 481 VVTITDTAVKNAQEAYNEAVETAEAEEKAKALPPLKPTAPPVAEDVKCEVTDLVDD 536 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ockelbo virus] Sequence ID: P27283.2 Length: 2515 Range 1: 1 to 537 Score:872 bits(2254), Expect:0.0, Method:Compositional matrix adjust., Identities:410/537(76%), Positives:460/537(85%), Gaps:1/537(0%) Query 1 MEKPTVHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPTS 60 MEKP V+VDVDPQSPFV+QLQKSFPQFE+VAQQ TPNDHANARAFSHLASKLIE E+PT+ Sbjct 1 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQATPNDHANARAFSHLASKLIELEVPTT 60 Query 61 VTILDIGSAPARRMYSEHKYHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLAD 120 TILDIGSAPARRM+SEH+YHCVCPMRSPEDPDR+M YAS+LA+KA +ITNK LH+K+ D Sbjct 61 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD 120 Query 121 LKSVLESPDAETGTICFHNDVICRTTAEVSVMQNVYINAPSTIYHQALKGVRKLYWIGFD 180 L++VL++PDAET ++CFHNDV C T AE SVMQ+VYINAP TIYHQA+KGVR LYWIGFD Sbjct 121 LRTVLDTPDAETPSLCFHNDVTCNTRAEYSVMQDVYINAPGTIYHQAMKGVRTLYWIGFD 180 Query 181 TTQFMFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTNV 240 TTQFMFS+MAGSYP+YNTNWADE+VLEARNIGLCSTKL EG GKLS RKK LKPG+ V Sbjct 181 TTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRV 240 Query 241 YFSVGSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGITGR 300 YFSVGSTLYPE+RA LQSWHLPSVFHLKGKQS+TCRCDT V+CEGYVVKKITISPGITG Sbjct 241 YFSVGSTLYPEHRASLQSWHLPSVFHLKGKQSYTCRCDTVVSCEGYVVKKITISPGITGE 300 Query 301 VNRYTVTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDAQKLL 360 Y VTNNSEGFLLCK+TDTVKGERVSFPVCTYIP +ICDQMTGI+ATDI P+DAQKLL Sbjct 301 TVGYAVTNNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLL 360 Query 361 VGLNQRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKLAFGC 420 VGLNQRIV+NGKTNRNTNTMQNYLLP +A G SKWAKERK D +EK L RERKL +GC Sbjct 361 VGLNQRIVINGKTNRNTNTMQNYLLPTIAQGFSKWAKERKEDLDNEKMLGTRERKLTYGC 420 Query 421 LWAFKTKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTTSLPMSLRQKVKLLLVKKTNKP 480 LWAF+TKK+HSFYRPPGTQT VKV A FSAFPMSSVWTTSLPMSLRQK+KL L K + Sbjct 421 LWAFRTKKVHSFYRPPGTQTSVKVPASFSAFPMSSVWTTSLPMSLRQKMKLALQPKKEEK 480 Query 481 VVTITDTAVKNAQEAYNEAVETAEAEEKAKALPPLKPTAP-PVAEDVKCEVTDLVDD 536 ++ + + V A+ A+ +A E A AE+ +ALPPL A +V CEV L D Sbjct 481 LLQVPEELVMEAKAAFEDAQEEARAEKLREALPPLVADKDIEAAAEVVCEVEGLQAD 537 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; AltName: Full=p270 nonstructural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sindbis virus] Sequence ID: P03317.2 Length: 2513 Range 1: 1 to 537 Score:868 bits(2244), Expect:0.0, Method:Compositional matrix adjust., Identities:407/537(76%), Positives:460/537(85%), Gaps:1/537(0%) Query 1 MEKPTVHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPTS 60 MEKP V+VDVDPQSPFV+QLQKSFPQFE+VAQQVTPNDHANARAFSHLASKLIE E+PT+ Sbjct 1 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTT 60 Query 61 VTILDIGSAPARRMYSEHKYHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLAD 120 TILDIGSAPARRM+SEH+YHCVCPMRSPEDPDR+M YAS+LA+KA +ITNK LH+K+ D Sbjct 61 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD 120 Query 121 LKSVLESPDAETGTICFHNDVICRTTAEVSVMQNVYINAPSTIYHQALKGVRKLYWIGFD 180 L++VL++PDAET ++CFHNDV C AE SVMQ+VYINAP TIYHQA+KGVR LYWIGFD Sbjct 121 LRTVLDTPDAETPSLCFHNDVTCNMRAEYSVMQDVYINAPGTIYHQAMKGVRTLYWIGFD 180 Query 181 TTQFMFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTNV 240 TTQFMFS+MAGSYP+YNTNWADE+VLEARNIGLCSTKL EG GKLS RKK LKPG+ V Sbjct 181 TTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRV 240 Query 241 YFSVGSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGITGR 300 YFSVGSTLYPE+RA LQSWHLPSVFHL GKQS+TCRCDT V+CEGYVVKKITISPGITG Sbjct 241 YFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITGE 300 Query 301 VNRYTVTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDAQKLL 360 Y VT+NSEGFLLCK+TDTVKGERVSFPVCTYIP +ICDQMTGI+ATDI P+DAQKLL Sbjct 301 TVGYAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLL 360 Query 361 VGLNQRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKLAFGC 420 VGLNQRIV+NG+TNRNTNTMQNYLLP +A G SKWAKERK D +EK L RERKL +GC Sbjct 361 VGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYGC 420 Query 421 LWAFKTKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTTSLPMSLRQKVKLLLVKKTNKP 480 LWAF+TKK+HSFYRPPGTQT VKV A FSAFPMSSVWTTSLPMSLRQK+KL L K + Sbjct 421 LWAFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEEK 480 Query 481 VVTITDTAVKNAQEAYNEAVETAEAEEKAKALPPL-KPTAPPVAEDVKCEVTDLVDD 536 ++ +++ V A+ A+ +A E A AE+ +ALPPL A +V CEV L D Sbjct 481 LLQVSEELVMEAKAAFEDAQEEARAEKLREALPPLVADKGIEAAAEVVCEVEGLQAD 537 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Semliki Forest virus] Sequence ID: P08411.2 Length: 2432 Range 1: 5 to 531 Score:716 bits(1847), Expect:0.0, Method:Compositional matrix adjust., Identities:334/529(63%), Positives:414/529(78%), Gaps:3/529(0%) Query 6 VHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPTSVTILD 65 VHVD++ SPF+ LQK+FP FE+ + QVTPNDHANARAFSHLA+KLIE E ILD Sbjct 5 VHVDIEADSPFIKSLQKAFPSFEVESLQVTPNDHANARAFSHLATKLIEQETDKDTLILD 64 Query 66 IGSAPARRMYSEHKYHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLADLKSVL 125 IGSAP+RRM S HKYHCVCPMRS EDP+RL+ YA +LA +G++ ++ + K+ DL++V+ Sbjct 65 IGSAPSRRMMSTHKYHCVCPMRSAEDPERLVCYAKKLAAASGKVLDREIAGKITDLQTVM 124 Query 126 ESPDAETGTICFHNDVICRTTAEVSVMQNVY-INAPSTIYHQALKGVRKLYWIGFDTTQF 184 +PDAE+ T C H DV CRT AEV+V Q+VY ++AP+++YHQA+KGVR YWIGFDTT F Sbjct 125 ATPDAESPTFCLHTDVTCRTAAEVAVYQDVYAVHAPTSLYHQAMKGVRTAYWIGFDTTPF 184 Query 185 MFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTNVYFSV 244 MF ++AG+YP+Y TNWADE+VL+ARNIGLC+ L EG +GKLS RKK LKP V FSV Sbjct 185 MFDALAGAYPTYATNWADEQVLQARNIGLCAASLTEGRLGKLSILRKKQLKPCDTVMFSV 244 Query 245 GSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGITGRVNRY 304 GSTLY E+R L+SWHLPSVFHLKGKQSFTCRCDT V+CEGYVVKKIT+ PG+ G+ Y Sbjct 245 GSTLYTESRKLLRSWHLPSVFHLKGKQSFTCRCDTIVSCEGYVVKKITMCPGLYGKTVGY 304 Query 305 TVTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDAQKLLVGLN 364 VT ++EGFL+CK TDTVKGERVSFPVCTY+P +ICDQMTGILATD+ PEDAQKLLVGLN Sbjct 305 AVTYHAEGFLVCKTTDTVKGERVSFPVCTYVPSTICDQMTGILATDVTPEDAQKLLVGLN 364 Query 365 QRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKLAFGCLWAF 424 QRIVVNG+T RNTNTM+NYLLP VA SKWA+E KAD DEKPL VRER L CLWAF Sbjct 365 QRIVVNGRTQRNTNTMKNYLLPIVAVAFSKWAREYKADLDDEKPLGVRERSLTCCCLWAF 424 Query 425 KTKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTTSLPMSLRQKVKLLLVKKTNKPVVTI 484 KT+K+H+ Y+ P TQTIVKV +EF++F + S+W+T L + +R ++K+LL KKT + ++ + Sbjct 425 KTRKMHTMYKKPDTQTIVKVPSEFNSFVIPSLWSTGLAIPVRSRIKMLLAKKTKRELIPV 484 Query 485 TDTAVKNAQEAYNEAVETAEAEEKAKALPPLKPTAPPVAEDVKCEVTDL 533 D + +A++A E E EAE +ALPPL P AP V +V +L Sbjct 485 LDAS--SARDAEQEEKERLEAELTREALPPLVPIAPAETGVVDVDVEEL 531 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Getah virus] Sequence ID: Q5Y389.3 Length: 2467 Range 1: 3 to 471 Score:692 bits(1785), Expect:0.0, Method:Compositional matrix adjust., Identities:315/469(67%), Positives:383/469(81%), Gaps:1/469(0%) Query 6 VHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPTSVTILD 65 V VDV+ SPF+ LQK+FP FE+ +QQVTPNDHANARAFSHLA+KLIE E+PT VTILD Sbjct 3 VTVDVEADSPFLKALQKAFPAFEVESQQVTPNDHANARAFSHLATKLIEQEVPTGVTILD 62 Query 66 IGSAPARRMYSEHKYHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLADLKSVL 125 +GSAPARR+ S+H YHC+CPM+S EDP+RL NYA +LA +G + +K + K+ DL+ V+ Sbjct 63 VGSAPARRLMSDHTYHCICPMKSAEDPERLANYARKLAKASGTVLDKNVSGKITDLQDVM 122 Query 126 ESPDAETGTICFHNDVICRTTAEVSVMQNVY-INAPSTIYHQALKGVRKLYWIGFDTTQF 184 +PD E+ T C H D CRT AEV+V Q+VY ++AP+++YHQA+KGVR YWIGFDTT F Sbjct 123 ATPDLESPTFCLHTDETCRTRAEVAVYQDVYAVHAPTSLYHQAIKGVRTAYWIGFDTTPF 182 Query 185 MFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTNVYFSV 244 MF ++AG+YP+Y+TNWADE+VL+ARNIGLC+T L EG GKLS RKK L+P V FSV Sbjct 183 MFEALAGAYPAYSTNWADEQVLQARNIGLCATGLSEGRRGKLSIMRKKCLRPSDRVMFSV 242 Query 245 GSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGITGRVNRY 304 GSTLY E+R L+SWHLPSVFHLKGK SFTCRCDT V+CEGYVVKKITISPGI G+ Y Sbjct 243 GSTLYTESRKLLRSWHLPSVFHLKGKNSFTCRCDTVVSCEGYVVKKITISPGIYGKTVDY 302 Query 305 TVTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDAQKLLVGLN 364 VT+++EGFL+CKITDTV+GERVSFPVCTY+P +ICDQMTGILATD+ PEDAQKLLVGLN Sbjct 303 AVTHHAEGFLMCKITDTVRGERVSFPVCTYVPATICDQMTGILATDVTPEDAQKLLVGLN 362 Query 365 QRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKLAFGCLWAF 424 QRIVVNG+T RNTNTM+NYLLP VA SKWA+E +AD DEKPL RER L CLWAF Sbjct 363 QRIVVNGRTQRNTNTMKNYLLPVVAQAFSKWAREARADMEDEKPLGTRERTLTCCCLWAF 422 Query 425 KTKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTTSLPMSLRQKVKLLL 473 K+ KIH+ Y+ P TQTIVKV + F +F + S+W++SL M +RQ++KLLL Sbjct 423 KSHKIHTMYKRPETQTIVKVPSTFDSFVIPSLWSSSLSMGIRQRIKLLL 471 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sagiyama virus] Sequence ID: Q9JGL0.3 Length: 2467 Range 1: 3 to 471 Score:691 bits(1784), Expect:0.0, Method:Compositional matrix adjust., Identities:315/469(67%), Positives:383/469(81%), Gaps:1/469(0%) Query 6 VHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPTSVTILD 65 V VDV+ SPF+ LQK+FP FE+ +QQVTPNDHANARAFSHLA+KLIE E+PT VTILD Sbjct 3 VTVDVEADSPFLKALQKAFPAFEVESQQVTPNDHANARAFSHLATKLIEQEVPTGVTILD 62 Query 66 IGSAPARRMYSEHKYHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLADLKSVL 125 +GSAPARR+ S+H YHC+CPM+S EDP+RL NYA +LA +G + +K + K+ DL+ V+ Sbjct 63 VGSAPARRLMSDHTYHCICPMKSAEDPERLANYARKLAKASGTVLDKNVSGKITDLQDVM 122 Query 126 ESPDAETGTICFHNDVICRTTAEVSVMQNVY-INAPSTIYHQALKGVRKLYWIGFDTTQF 184 +PD E+ T C H D CRT AEV+V Q+VY ++AP+++YHQA+KGVR YWIGFDTT F Sbjct 123 ATPDLESPTFCLHTDETCRTRAEVAVYQDVYAVHAPTSLYHQAIKGVRTAYWIGFDTTPF 182 Query 185 MFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTNVYFSV 244 MF ++AG+YP+Y+TNWADE+VL+ARNIGLC+T L EG GKLS RKK L+P V FSV Sbjct 183 MFEALAGAYPAYSTNWADEQVLQARNIGLCATGLSEGRRGKLSIMRKKCLRPSDRVMFSV 242 Query 245 GSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGITGRVNRY 304 GSTLY E+R L+SWHLPSVFHLKGK SFTCRCDT V+CEGYVVKKITISPGI G+ Y Sbjct 243 GSTLYTESRKLLRSWHLPSVFHLKGKNSFTCRCDTVVSCEGYVVKKITISPGIYGKTVDY 302 Query 305 TVTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDAQKLLVGLN 364 VT+++EGFL+CKITDTV+GERVSFPVCTY+P +ICDQMTGILATD+ PEDAQKLLVGLN Sbjct 303 AVTHHAEGFLVCKITDTVRGERVSFPVCTYVPATICDQMTGILATDVTPEDAQKLLVGLN 362 Query 365 QRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKLAFGCLWAF 424 QRIVVNG+T RNTNTM+NYLLP VA SKWA+E +AD DEKPL RER L CLWAF Sbjct 363 QRIVVNGRTQRNTNTMKNYLLPVVAQAFSKWAREARADMEDEKPLGTRERTLTCCCLWAF 422 Query 425 KTKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTTSLPMSLRQKVKLLL 473 K+ KIH+ Y+ P TQTIVKV + F +F + S+W++SL M +RQ++KLLL Sbjct 423 KSHKIHTMYKRPETQTIVKVPSTFDSFVIPSLWSSSLSMGIRQRIKLLL 471 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ross river virus (STRAIN NB5092)] Sequence ID: P13887.2 Length: 2480 Range 1: 3 to 476 Score:680 bits(1755), Expect:0.0, Method:Compositional matrix adjust., Identities:308/474(65%), Positives:380/474(80%), Gaps:0/474(0%) Query 6 VHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPTSVTILD 65 V VDV+ SPF+ LQK+FP FE+ +QQVTPNDHANARAFSHLA+KLIE E+P ++TILD Sbjct 3 VTVDVEADSPFLKALQKAFPAFEVESQQVTPNDHANARAFSHLATKLIEQEVPANITILD 62 Query 66 IGSAPARRMYSEHKYHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLADLKSVL 125 +GSAPARR+ S+H YHC+CPM+S EDP+RL NYA +LA AGE+ +K + K+ DL+ V+ Sbjct 63 VGSAPARRLMSDHSYHCICPMKSAEDPERLANYARKLAKTAGEVLDKNVSGKITDLQDVM 122 Query 126 ESPDAETGTICFHNDVICRTTAEVSVMQNVYINAPSTIYHQALKGVRKLYWIGFDTTQFM 185 +PD E+ T C H D CRT AEV+V Q+V +AP+++YHQA+KGVR +YWIGFDTT FM Sbjct 123 ATPDLESPTFCLHTDETCRTRAEVAVYQDVXXHAPTSLYHQAMKGVRTVYWIGFDTTPFM 182 Query 186 FSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTNVYFSVG 245 F +AG+YP+Y+TNWADE+VL+ARNIGLC+T L EG GK+S RKK L+P FSVG Sbjct 183 FEVVAGAYPTYSTNWADEQVLQARNIGLCATSLSEGHRGKISIMRKKRLRPSDRXMFSVG 242 Query 246 STLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGITGRVNRYT 305 TLY E+R L+SWHLPSVFHLKGK SFTCRCDT V+CEGYVVKKIT+SPG G+ Y Sbjct 243 XTLYIESRRLLKSWHLPSVFHLKGKNSFTCRCDTIVSCEGYVVKKITMSPGTYGKTVGYA 302 Query 306 VTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDAQKLLVGLNQ 365 VT+++EGFL+CK+TDTV+GERVSFPVCTY+P +ICDQMTGILATD+ PEDAQKLLVGLNQ Sbjct 303 VTHHAEGFLMCKVTDTVRGERVSFPVCTYVPATICDQMTGILATDVTPEDAQKLLVGLNQ 362 Query 366 RIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKLAFGCLWAFK 425 RIVVNG+T RNTNTM+NYLLP VA SKWA+E KAD DEKPL RER L CLWAFK Sbjct 363 RIVVNGRTQRNTNTMKNYLLPVVAQAFSKWAREAKADMEDEKPLGTRERTLTCCCLWAFK 422 Query 426 TKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTTSLPMSLRQKVKLLLVKKTNK 479 K H+ Y+ P TQTIVKV + F +F + S+W++SL + +RQ++KLLL K ++ Sbjct 423 NHKTHTMYKRPDTQTIVKVPSTFDSFVIPSLWSSSLSIGIRQRIKLLLGPKLSR 476 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Mayaro virus (strain Brazil)] Sequence ID: Q8QZ73.3 Length: 2437 Range 1: 4 to 530 Score:677 bits(1746), Expect:0.0, Method:Compositional matrix adjust., Identities:323/529(61%), Positives:408/529(77%), Gaps:3/529(0%) Query 6 VHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPTSVTILD 65 V VD++ +SPF+ LQ++FP FE+ AQQVTPNDHANARAFSHLA+KLIE E ILD Sbjct 4 VFVDIEAESPFLKSLQRAFPAFEVEAQQVTPNDHANARAFSHLATKLIEQETEKDTLILD 63 Query 66 IGSAPARRMYSEHKYHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLADLKSVL 125 IGSAPARRM SEH YHCVCPMRS EDP+RL+ YA +LA +GE+ ++ + K+ DL+SV+ Sbjct 64 IGSAPARRMMSEHTYHCVCPMRSAEDPERLLYYARKLAKASGEVVDRNIAAKIDDLQSVM 123 Query 126 ESPDAETGTICFHNDVICRTTAEVSVMQNVY-INAPSTIYHQALKGVRKLYWIGFDTTQF 184 +PD E+ T C H D CRT AEV+V Q+VY ++AP+++Y QA+KGVR YWIGFDTT F Sbjct 124 ATPDNESRTFCLHTDQTCRTQAEVAVYQDVYAVHAPTSLYFQAMKGVRTAYWIGFDTTPF 183 Query 185 MFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTNVYFSV 244 MF +MAG+YP+Y TNWADE+VL+ARNIGLCS L EG +GKLS RKK + P + FSV Sbjct 184 MFDTMAGAYPTYATNWADEQVLKARNIGLCSASLTEGHLGKLSIMRKKKMTPSDQIMFSV 243 Query 245 GSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGITGRVNRY 304 GSTLY E+R L+SWHLPSVFHLKG+QS+TCRCDT V+CEGYVVKKIT+SPG+ G+ + Y Sbjct 244 GSTLYIESRRLLKSWHLPSVFHLKGRQSYTCRCDTIVSCEGYVVKKITMSPGVFGKTSGY 303 Query 305 TVTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDAQKLLVGLN 364 VT+++EGFL+CK TDT+ GERVSFP+CTY+P +ICDQMTGILAT++ PEDAQKLLVGLN Sbjct 304 AVTHHAEGFLVCKTTDTIAGERVSFPICTYVPSTICDQMTGILATEVTPEDAQKLLVGLN 363 Query 365 QRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKLAFGCLWAF 424 QRIVVNG+T RNTNTM+NYLLP V+ SKWAKE + D DEK + +RER L CLWAF Sbjct 364 QRIVVNGRTQRNTNTMKNYLLPVVSQAFSKWAKEYRLDQEDEKNMGMRERTLTCCCLWAF 423 Query 425 KTKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTTSLPMSLRQKVKLLLVKKTNKPVVTI 484 KT K H+ Y+ P TQTIVKV +EF++F + S+W+ L + +R +++LLL + +P+V Sbjct 424 KTHKNHTMYKKPDTQTIVKVPSEFNSFVIPSLWSAGLSIGIRHRIRLLLQSRRVEPLVPS 483 Query 485 TDTAVKNAQEAYNEAVETAEAEEKAKALPPLKPTAPPVAEDVKCEVTDL 533 D V A+ A EA E EAE+ ALPPL PTAP + + + +V +L Sbjct 484 MD--VGEARAAEREAAEAKEAEDTLAALPPLIPTAPVLDDIPEVDVEEL 530 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [O'nyong-nyong virus strain Gulu] Sequence ID: P13886.2 Length: 2514 Range 1: 3 to 524 Score:669 bits(1727), Expect:0.0, Method:Compositional matrix adjust., Identities:319/527(61%), Positives:400/527(75%), Gaps:6/527(1%) Query 5 TVHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPTSVTIL 64 +V+VD+D S F+ LQ+++P FE+ +QVTPNDHANARAFSHLA KLIE EI TIL Sbjct 3 SVYVDIDADSAFLKALQQAYPMFEVEPKQVTPNDHANARAFSHLAIKLIEQEIDPDSTIL 62 Query 65 DIGSAPARRMYSEHKYHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLADLKSV 124 DIGSAPARRM S+ KYHCVCPMRS EDP+RL NYA +LA AG++T+K + K+ DL++V Sbjct 63 DIGSAPARRMMSDRKYHCVCPMRSAEDPERLANYARKLASAAGKVTDKNISGKINDLQAV 122 Query 125 LESPDAETGTICFHNDVICRTTAEVSVMQNVY-INAPSTIYHQALKGVRKLYWIGFDTTQ 183 + P+ ET T C H D C+ +V++ Q+VY ++AP+++YHQA+KGVR YWIGFDTT Sbjct 123 MAVPNMETSTFCLHTDATCKQRGDVAIYQDVYAVHAPTSLYHQAIKGVRVAYWIGFDTTP 182 Query 184 FMFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTNVYFS 243 FM+++MAG+YPSY+TNWADE+VL+A+NIGLCST L EG GKLS R K LKP V FS Sbjct 183 FMYNAMAGAYPSYSTNWADEQVLKAKNIGLCSTDLSEGRRGKLSIMRGKKLKPCDRVLFS 242 Query 244 VGSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGITGRVNR 303 VGSTLYPE+R LQSWHLPSVFHLKGK SFTCRCDT V+CEGYVVK++T+SPGI G+ + Sbjct 243 VGSTLYPESRKLLQSWHLPSVFHLKGKLSFTCRCDTIVSCEGYVVKRVTMSPGIYGKTSG 302 Query 304 YTVTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDAQKLLVGL 363 Y VT+++ GFL+CK TDTV GERVSF VCTY+P +ICDQMTGILAT++ PEDAQKLLVGL Sbjct 303 YAVTHHAGGFLMCKTTDTVDGERVSFSVCTYVPATICDQMTGILATEVTPEDAQKLLVGL 362 Query 364 NQRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKLAFGCLWA 423 NQRIVVNG+T RNTNTM+NYLLP VA SKWAKE + D DEK L VRER L CLWA Sbjct 363 NQRIVVNGRTQRNTNTMKNYLLPIVAQAFSKWAKECRKDMEDEKLLGVRERTLTCCCLWA 422 Query 424 FKTKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTTSLPMSLRQKVKLLLVKKTNKPVVT 483 F+ K H+ Y+ P TQ+I KV AEF +F + S+W++ L + LR ++K LL K + Sbjct 423 FRKHKTHTVYKRPDTQSIQKVPAEFDSFVIPSLWSSGLSIPLRTRIKWLLSKAPKYEQLP 482 Query 484 ITDTAVKNAQEAYNEAVETAEAEEKAKALPPLKPTAPPVAEDVKCEV 530 + A + AQ A +AVE EAE +A+PPL+ T +D++ E+ Sbjct 483 HSGNAEEAAQ-AETDAVEEQEAELTREAMPPLQAT----QDDIQVEI 524 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [O'nyong-nyong virus strain SG650] Sequence ID: O90368.1 Length: 2513 Range 1: 3 to 524 Score:667 bits(1722), Expect:0.0, Method:Compositional matrix adjust., Identities:318/527(60%), Positives:399/527(75%), Gaps:6/527(1%) Query 5 TVHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPTSVTIL 64 +V+VD+D S F+ LQ+++P FE+ +QVTPNDHANARAFSHLA KLIE EI TIL Sbjct 3 SVYVDIDADSAFLKALQRAYPMFEVEPKQVTPNDHANARAFSHLAIKLIEQEIDPDSTIL 62 Query 65 DIGSAPARRMYSEHKYHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLADLKSV 124 DIG APARRM S+ KYHCVCPMRS EDP+RL NYA +LA AG++T+K + K+ DL++V Sbjct 63 DIGPAPARRMMSDRKYHCVCPMRSAEDPERLANYARKLASAAGKVTDKNISGKINDLQAV 122 Query 125 LESPDAETGTICFHNDVICRTTAEVSVMQNVY-INAPSTIYHQALKGVRKLYWIGFDTTQ 183 + P+ ET T C H D C+ +V++ Q+VY ++AP+++YHQA+KGVR YWIGFDTT Sbjct 123 MAVPNMETSTFCLHTDATCKQRGDVAIYQDVYAVHAPTSLYHQAIKGVRVAYWIGFDTTP 182 Query 184 FMFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTNVYFS 243 FM+++MAG+YPSY+TNWADE+VL+A+NIGLCST L EG GKLS R K LKP V FS Sbjct 183 FMYNAMAGAYPSYSTNWADEQVLKAKNIGLCSTDLSEGRRGKLSIMRGKKLKPCDRVLFS 242 Query 244 VGSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGITGRVNR 303 VGSTLYPE+R LQSWHLPSVFHLKGK SFTCRCDT V+CEGYVVK++T+SPGI G+ + Sbjct 243 VGSTLYPESRKLLQSWHLPSVFHLKGKLSFTCRCDTIVSCEGYVVKRVTMSPGIYGKTSG 302 Query 304 YTVTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDAQKLLVGL 363 Y VT++++GFL+CK TDTV GERVSF VCTY+P +ICDQMTGILAT++ PEDAQKLLVGL Sbjct 303 YAVTHHADGFLMCKTTDTVDGERVSFSVCTYVPATICDQMTGILATEVTPEDAQKLLVGL 362 Query 364 NQRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKLAFGCLWA 423 NQRIVVNG+T RNTNTM+NYLLP VA SKWAKE + D DEK L VRER L CLWA Sbjct 363 NQRIVVNGRTQRNTNTMKNYLLPIVAQAFSKWAKECRKDMEDEKLLGVRERTLTCCCLWA 422 Query 424 FKTKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTTSLPMSLRQKVKLLLVKKTNKPVVT 483 F+ K H+ Y+ P TQ+I KV AEF +F + S+W++ L + LR ++K LL K + Sbjct 423 FRKHKTHTVYKRPDTQSIQKVPAEFDSFVIPSLWSSGLSIPLRTRIKWLLSKAPKHEQLP 482 Query 484 ITDTAVKNAQEAYNEAVETAEAEEKAKALPPLKPTAPPVAEDVKCEV 530 + A + AQ A +A E EAE +A+PPL+ T +DV+ E+ Sbjct 483 HSGNAEEAAQ-AEMDAAEEREAELTREAMPPLQAT----QDDVQVEI 524 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Igbo Ora virus] Sequence ID: O90370.1 Length: 2513 Range 1: 3 to 524 Score:666 bits(1718), Expect:0.0, Method:Compositional matrix adjust., Identities:317/527(60%), Positives:398/527(75%), Gaps:6/527(1%) Query 5 TVHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPTSVTIL 64 +V+VD+D S F+ LQ+++P FE+ +QVTPNDHANARAFSHLA KLIE EI TIL Sbjct 3 SVYVDIDADSAFLKALQRAYPMFEVEPKQVTPNDHANARAFSHLAIKLIEQEIDPGSTIL 62 Query 65 DIGSAPARRMYSEHKYHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLADLKSV 124 IGSAPARRM S+ KYHCVCPMRS EDP+RL NYA +LA AG++T+K + K+ DL++V Sbjct 63 GIGSAPARRMMSDRKYHCVCPMRSAEDPERLANYARKLASAAGKVTDKNISGKINDLQAV 122 Query 125 LESPDAETGTICFHNDVICRTTAEVSVMQNVY-INAPSTIYHQALKGVRKLYWIGFDTTQ 183 + P+ ET T C H D C+ +V++ Q+VY ++AP+++YHQA+KGV YWIGFDTT Sbjct 123 MAVPNMETSTFCLHTDATCKQRGDVAIYQDVYAVHAPTSLYHQAIKGVHVAYWIGFDTTP 182 Query 184 FMFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTNVYFS 243 FM+++MAG+YPSY+TNWADE+VL+A+NIGLCST L EG GKLS R K KP V FS Sbjct 183 FMYNAMAGAYPSYSTNWADEQVLKAKNIGLCSTDLSEGRRGKLSIMRGKKFKPCDRVLFS 242 Query 244 VGSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGITGRVNR 303 VGSTLYPE+R LQSWHLPSVFHLKGK SFTCRCDT V+CEGYVVK++T+SPGI G+ + Sbjct 243 VGSTLYPESRKLLQSWHLPSVFHLKGKLSFTCRCDTIVSCEGYVVKRVTMSPGIYGKTSG 302 Query 304 YTVTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDAQKLLVGL 363 Y VT++++GFL+CK TDTV GERVSF VCTY+P +ICDQMTGILAT++ PEDAQKLLVGL Sbjct 303 YAVTHHADGFLMCKTTDTVDGERVSFSVCTYVPATICDQMTGILATEVTPEDAQKLLVGL 362 Query 364 NQRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKLAFGCLWA 423 NQRIVVNG+T RNTNTM+NYLLP VA SKWAKE + D DEK L VRER L CLWA Sbjct 363 NQRIVVNGRTQRNTNTMKNYLLPIVAQAFSKWAKECRKDMEDEKLLGVRERTLTCCCLWA 422 Query 424 FKTKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTTSLPMSLRQKVKLLLVKKTNKPVVT 483 F+ K H+ Y+ P TQ+I KV AEF +F + S+W++ L + LR ++K LL K + Sbjct 423 FRKHKTHTVYKRPDTQSIQKVPAEFDSFVIPSLWSSGLSIPLRTRIKWLLSKAPKHEQLP 482 Query 484 ITDTAVKNAQEAYNEAVETAEAEEKAKALPPLKPTAPPVAEDVKCEV 530 + A + AQ A +AVE EAE +A+PPL+ T +DV+ E+ Sbjct 483 HSGNAEEAAQ-AETDAVEEREAELTREAMPPLQAT----QDDVQVEI 524 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Chikungunya virus strain Senegal 37997] Sequence ID: Q5XXP4.1 Length: 2474 Range 1: 4 to 524 Score:661 bits(1705), Expect:0.0, Method:Compositional matrix adjust., Identities:322/526(61%), Positives:403/526(76%), Gaps:6/526(1%) Query 6 VHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPTSVTILD 65 V+VD+D S F+ LQ+++P FE+ +QVTPNDHANARAFSHLA KLIE EI TILD Sbjct 4 VYVDIDADSAFLKALQRAYPMFEVEPRQVTPNDHANARAFSHLAIKLIEQEIDPDSTILD 63 Query 66 IGSAPARRMYSEHKYHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLADLKSVL 125 IGSAPARRM S+ KYHCVCPMRS EDP+RL NYA +LA AG++ ++ + +K+ DL++V+ Sbjct 64 IGSAPARRMMSDRKYHCVCPMRSAEDPERLANYARKLASAAGKVLDRNISEKIGDLQAVM 123 Query 126 ESPDAETGTICFHNDVICRTTAEVSVMQNVY-INAPSTIYHQALKGVRKLYWIGFDTTQF 184 PDAET T C H DV CR A+V++ Q+VY ++AP+++YHQA+KGVR YWIGFDTT F Sbjct 124 AVPDAETPTFCLHTDVSCRQRADVAIYQDVYAVHAPTSLYHQAIKGVRVAYWIGFDTTPF 183 Query 185 MFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTNVYFSV 244 M+++MAG+YPSY+TNWADE+VL+A+NIGLCST L EG GKLS R K +KP V FSV Sbjct 184 MYNAMAGAYPSYSTNWADEQVLKAKNIGLCSTDLTEGRRGKLSIMRGKKMKPCDRVLFSV 243 Query 245 GSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGITGRVNRY 304 GSTLYPE+R L+SWHLPSVFHLKGK SFTCRCDT V+CEGYVVK+ITISPG+ G+ Y Sbjct 244 GSTLYPESRKLLKSWHLPSVFHLKGKLSFTCRCDTVVSCEGYVVKRITISPGLYGKTTGY 303 Query 305 TVTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDAQKLLVGLN 364 VT++++GFL+CK TDTV GERVSF VCTY+P +ICDQMTGILAT++ PEDAQKLLVGLN Sbjct 304 AVTHHADGFLMCKTTDTVDGERVSFSVCTYVPATICDQMTGILATEVTPEDAQKLLVGLN 363 Query 365 QRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKLAFGCLWAF 424 QRIVVNG+T RNTNTM+NYLLP VA SKWAKE + D DEK L +RER L CLWAF Sbjct 364 QRIVVNGRTQRNTNTMKNYLLPVVAQAFSKWAKECRKDMEDEKLLGIRERTLTCCCLWAF 423 Query 425 KTKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTTSLPMSLRQKVKLLLVKKTNKPVVTI 484 K +K H+ Y+ P TQ+I KV AEF +F + S+W++ L + LR ++K LL K ++ Sbjct 424 KKQKTHTVYKRPDTQSIQKVPAEFDSFVVPSLWSSGLSIPLRTRIKWLLSKVPKTDLIPY 483 Query 485 TDTAVKNAQEAYNEAVETAEAEEKAKALPPLKPTAPPVAEDVKCEV 530 + A K A++A EA E EAE +ALPPL+ +DV+ E+ Sbjct 484 SGDA-KEARDAEKEAEEEREAELTREALPPLQ----AAQDDVQVEI 524 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain P676)] Sequence ID: P36328.2 Length: 2493 Range 1: 1 to 513 Score:657 bits(1694), Expect:0.0, Method:Compositional matrix adjust., Identities:310/517(60%), Positives:392/517(75%), Gaps:6/517(1%) Query 1 MEKPTVHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPTS 60 MEK VHVD++ SPF+ LQ+SFPQFE+ A+QVT NDHANARAFSHLASKLIE E+ S Sbjct 1 MEK--VHVDIEEDSPFLRALQRSFPQFEVEAKQVTDNDHANARAFSHLASKLIETEVDPS 58 Query 61 VTILDIGSAPARRMYSEHKYHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLAD 120 TILDIGSAPARRMYS+HKYHC+CPMR EDPDRL YA++L EIT+K L K+ + Sbjct 59 DTILDIGSAPARRMYSKHKYHCICPMRCAEDPDRLYKYATKLKKNCKEITDKELDKKMKE 118 Query 121 LKSVLESPDAETGTICFHNDVICRTTAEVSVMQNVY-INAPSTIYHQALKGVRKLYWIGF 179 L +V+ PD ET T+C H+D CR +V+V Q+VY ++ P+++YHQA KGVR YWIGF Sbjct 119 LAAVMSDPDLETETMCLHDDESCRYEGQVAVYQDVYAVDGPTSLYHQANKGVRVAYWIGF 178 Query 180 DTTQFMFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTN 239 DTT FMF ++AG+YPSY+TNWADE VL ARNIGLCS+ + E + +S RKK LKP N Sbjct 179 DTTPFMFKNLAGAYPSYSTNWADETVLTARNIGLCSSDVMERSRRGMSILRKKYLKPSNN 238 Query 240 VYFSVGSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGITG 299 V FSVGST+Y E R L+SWHLPSVFHL+GKQ++TCRC+T V+C+GYVVK+I ISPG+ G Sbjct 239 VLFSVGSTIYHEKRDLLRSWHLPSVFHLRGKQNYTCRCETIVSCDGYVVKRIAISPGLYG 298 Query 300 RVNRYTVTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDAQKL 359 + + Y T + EGFL CK+TDT+ GERVSFPVCTY+P ++CDQMTGILATD+ +DAQKL Sbjct 299 KPSGYAATMHREGFLCCKVTDTLNGERVSFPVCTYVPATLCDQMTGILATDVSADDAQKL 358 Query 360 LVGLNQRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKLAFG 419 LVGLNQRIVVNG+T RNTNTM+NYLLP VA ++WAKE K D DE+PL +R+R+L G Sbjct 359 LVGLNQRIVVNGRTQRNTNTMKNYLLPVVAQAFARWAKEYKEDQEDERPLGLRDRQLVMG 418 Query 420 CLWAFKTKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTTSLPMSLRQKV-KLLLVKKTN 478 C WAF+ KI S Y+ P TQTI+KV ++F +F + + + +L + LR ++ K+L K Sbjct 419 CCWAFRRHKITSIYKRPDTQTIIKVNSDFHSFVLPRIGSNTLEIGLRTRIRKMLEEHKEP 478 Query 479 KPVVTITDTAVKNAQEAYNEAVETAEAEEKAKALPPL 515 P++T D ++ A+ A +EA E EAEE ALPPL Sbjct 479 SPLITAED--IQEAKCAADEAKEVREAEELRAALPPL 513 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Trinidad donkey)] Sequence ID: P27282.3 Length: 2493 Range 1: 1 to 513 Score:656 bits(1693), Expect:0.0, Method:Compositional matrix adjust., Identities:311/517(60%), Positives:392/517(75%), Gaps:6/517(1%) Query 1 MEKPTVHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPTS 60 MEK VHVD++ SPF+ LQ+SFPQFE+ A+QVT NDHANARAFSHLASKLIE E+ S Sbjct 1 MEK--VHVDIEEDSPFLRALQRSFPQFEVEAKQVTDNDHANARAFSHLASKLIETEVDPS 58 Query 61 VTILDIGSAPARRMYSEHKYHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLAD 120 TILDIGSAPARRMYS+HKYHC+CPMR EDPDRL YA++L EIT+K L K+ + Sbjct 59 DTILDIGSAPARRMYSKHKYHCICPMRCAEDPDRLYKYATKLKKNCKEITDKELDKKMKE 118 Query 121 LKSVLESPDAETGTICFHNDVICRTTAEVSVMQNVY-INAPSTIYHQALKGVRKLYWIGF 179 L +V+ PD ET T+C H+D CR +V+V Q+VY ++ P+++YHQA KGVR YWIGF Sbjct 119 LAAVMSDPDLETETMCLHDDESCRYEGQVAVYQDVYAVDGPTSLYHQANKGVRVAYWIGF 178 Query 180 DTTQFMFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTN 239 DTT FMF ++AG+YPSY+TNWADE VL ARNIGLCS+ + E + +S RKK LKP N Sbjct 179 DTTPFMFKNLAGAYPSYSTNWADETVLTARNIGLCSSDVMERSRRGMSILRKKYLKPSNN 238 Query 240 VYFSVGSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGITG 299 V FSVGST+Y E R L+SWHLPSVFHL+GKQ++TCRC+T V+C+GYVVK+I ISPG+ G Sbjct 239 VLFSVGSTIYHEKRDLLRSWHLPSVFHLRGKQNYTCRCETIVSCDGYVVKRIAISPGLYG 298 Query 300 RVNRYTVTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDAQKL 359 + + Y T + EGFL CK+TDT+ GERVSFPVCTY+P ++CDQMTGILATD+ +DAQKL Sbjct 299 KPSGYAATMHREGFLCCKVTDTLNGERVSFPVCTYVPATLCDQMTGILATDVSADDAQKL 358 Query 360 LVGLNQRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKLAFG 419 LVGLNQRIVVNG+T RNTNTM+NYLLP VA ++WAKE K D DE+PL +R+R+L G Sbjct 359 LVGLNQRIVVNGRTQRNTNTMKNYLLPVVAQAFARWAKEYKEDQEDERPLGLRDRQLVMG 418 Query 420 CLWAFKTKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTTSLPMSLRQKV-KLLLVKKTN 478 C WAF+ KI S Y+ P TQTI+KV ++F +F + + + +L + LR ++ K+L K Sbjct 419 CCWAFRRHKITSIYKRPDTQTIIKVNSDFHSFVLPRIGSNTLEIGLRTRIRKMLEEHKEP 478 Query 479 KPVVTITDTAVKNAQEAYNEAVETAEAEEKAKALPPL 515 P++T D V+ A+ A +EA E EAEE ALPPL Sbjct 479 SPLITAED--VQEAKCAADEAKEVREAEELRAALPPL 513 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain 3880)] Sequence ID: P36327.3 Length: 2485 Range 1: 1 to 513 Score:654 bits(1688), Expect:0.0, Method:Compositional matrix adjust., Identities:309/517(60%), Positives:391/517(75%), Gaps:6/517(1%) Query 1 MEKPTVHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPTS 60 MEK VHVD++ SPF+ LQ+SFPQFE+ A+QVT NDHANARAFSHLASKLIE E+ S Sbjct 1 MEK--VHVDIEEDSPFLRALQRSFPQFEVEAKQVTDNDHANARAFSHLASKLIETEVDPS 58 Query 61 VTILDIGSAPARRMYSEHKYHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLAD 120 TILDIGSAPARRMYS+HKYHC+CPMR EDPDRL YA++L EIT+K L K+ + Sbjct 59 DTILDIGSAPARRMYSKHKYHCICPMRCAEDPDRLYKYATKLKKNCKEITDKELDKKMKE 118 Query 121 LKSVLESPDAETGTICFHNDVICRTTAEVSVMQNVY-INAPSTIYHQALKGVRKLYWIGF 179 L +V+ PD ET T+C H+D CR +V+V Q+VY ++ P+++YHQA KGVR YWIGF Sbjct 119 LAAVMSDPDLETETMCLHDDESCRYEGQVAVYQDVYAVDGPTSLYHQANKGVRVAYWIGF 178 Query 180 DTTQFMFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTN 239 DTT FMF ++AG+YPSY+TNWADE VL ARNIGLCS+ + E + +S RKK LKP N Sbjct 179 DTTPFMFKNLAGAYPSYSTNWADETVLTARNIGLCSSDVMERSRRGMSILRKKYLKPSNN 238 Query 240 VYFSVGSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGITG 299 V FSVGST+Y E R L+SWHLPSVFHL+GKQ++TCRC+T V+C+GYVVK+I ISPG+ G Sbjct 239 VLFSVGSTIYHEKRDLLRSWHLPSVFHLRGKQNYTCRCETIVSCDGYVVKRIAISPGLYG 298 Query 300 RVNRYTVTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDAQKL 359 + + Y T + EGFL CK+TDT+ GERVSFPVCTY+P ++CDQMTGILATD+ +DAQKL Sbjct 299 KPSGYAATMHREGFLCCKVTDTLNGERVSFPVCTYVPATLCDQMTGILATDVSADDAQKL 358 Query 360 LVGLNQRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKLAFG 419 LVGLNQRIVVNG+T RNTNTM+NYLLP VA ++WAKE K D DE+PL +R+R+L G Sbjct 359 LVGLNQRIVVNGRTQRNTNTMKNYLLPVVAQAFARWAKEYKEDQEDERPLGLRDRQLVMG 418 Query 420 CLWAFKTKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTTSLPMSLRQKV-KLLLVKKTN 478 C WAF+ KI S Y+ P TQTI+KV ++F +F + + + +L + LR ++ K+L K Sbjct 419 CCWAFRRHKITSIYKRPDTQTIIKVNSDFHSFVLPRIGSNTLEIGLRTRIRKMLEEHKEP 478 Query 479 KPVVTITDTAVKNAQEAYNEAVETAEAEEKAKALPPL 515 P++T D ++ A+ A +EA E EAEE LPPL Sbjct 479 SPLITAED--IQEAKCAADEAKEVREAEELRAVLPPL 513 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Chikungunya virus strain S27-African prototype] Sequence ID: Q8JUX6.1 Length: 2474 Range 1: 4 to 524 Score:654 bits(1687), Expect:0.0, Method:Compositional matrix adjust., Identities:319/526(61%), Positives:400/526(76%), Gaps:6/526(1%) Query 6 VHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPTSVTILD 65 V+VD+D S F+ LQ+++P FE+ +QVTPNDHANARAFSHLA KLIE EI TILD Sbjct 4 VYVDIDADSAFLKALQRAYPMFEVEPRQVTPNDHANARAFSHLAIKLIEQEIDPDSTILD 63 Query 66 IGSAPARRMYSEHKYHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLADLKSVL 125 IGSAPARRM S+ KYHCVCPMRS EDP+RL NYA +LA AG++ ++ + K+ DL++V+ Sbjct 64 IGSAPARRMMSDRKYHCVCPMRSAEDPERLANYARKLASAAGKVLDRNISGKIGDLQAVM 123 Query 126 ESPDAETGTICFHNDVICRTTAEVSVMQNVY-INAPSTIYHQALKGVRKLYWIGFDTTQF 184 PD ET T C H DV CR A+V++ Q+VY ++AP+++YHQA+KGVR YW+GFDTT F Sbjct 124 AVPDTETPTFCLHTDVSCRQRADVAIYQDVYAVHAPTSLYHQAIKGVRLAYWVGFDTTPF 183 Query 185 MFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTNVYFSV 244 M+++MAG+YPSY+TNWADE+VL+A+NIGLCST L EG GKLS R K L+P V FSV Sbjct 184 MYNAMAGAYPSYSTNWADEQVLKAKNIGLCSTDLTEGRRGKLSIMRGKKLEPCDRVLFSV 243 Query 245 GSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGITGRVNRY 304 GSTLYPE+R L+SWHLPSVFHLKGK SFTCRCDT V+CEGYVVK+IT+SPG+ G+ Y Sbjct 244 GSTLYPESRKLLKSWHLPSVFHLKGKLSFTCRCDTVVSCEGYVVKRITMSPGLYGKTTGY 303 Query 305 TVTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDAQKLLVGLN 364 VT++++GFL+CK TDTV GERVSF VCTY+P +ICDQMTGILAT++ PEDAQKLLVGLN Sbjct 304 AVTHHADGFLMCKTTDTVDGERVSFSVCTYVPATICDQMTGILATEVTPEDAQKLLVGLN 363 Query 365 QRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKLAFGCLWAF 424 QRIVVNG+T RNTNTM+NY++P VA SKWAKE + D DEK L VRER L CLWAF Sbjct 364 QRIVVNGRTQRNTNTMKNYMIPVVAQAFSKWAKECRKDMEDEKLLGVRERTLTCCCLWAF 423 Query 425 KTKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTTSLPMSLRQKVKLLLVKKTNKPVVTI 484 K +K H+ Y+ P TQ+I KV AEF +F + S+W++ L + LR ++K LL K K +T Sbjct 424 KKQKTHTVYKRPDTQSIQKVQAEFDSFVVPSLWSSGLSIPLRTRIKWLL-SKVPKTDLTP 482 Query 485 TDTAVKNAQEAYNEAVETAEAEEKAKALPPLKPTAPPVAEDVKCEV 530 + A++A EA E EAE +ALPPL+ EDV+ E+ Sbjct 483 YSGDAQEARDAEKEAEEEREAELTLEALPPLQ----AAQEDVQVEI 524 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Barmah Forest virus] Sequence ID: P87515.3 Length: 2411 Range 1: 1 to 515 Score:649 bits(1674), Expect:0.0, Method:Compositional matrix adjust., Identities:309/519(60%), Positives:385/519(74%), Gaps:5/519(0%) Query 1 MEKPTVHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPTS 60 M KP V +DV+P+S F Q+Q FPQFEI A Q TPNDHA+ARAFSHLA+KLIE E Sbjct 1 MAKPVVKIDVEPESHFAKQVQSCFPQFEIEAVQTTPNDHAHARAFSHLATKLIEMETAKD 60 Query 61 VTILDIGSAPARRMYSEHKYHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLAD 120 ILDIGSAPARR+YSEHKYHCVCPM+ EDP+R++ YA +L AG K +KL D Sbjct 61 QIILDIGSAPARRLYSEHKYHCVCPMKCTEDPERMLGYARKLI--AGSAKGKA--EKLRD 116 Query 121 LKSVLESPDAETGTICFHNDVICRTTAEVSVMQNVY-INAPSTIYHQALKGVRKLYWIGF 179 L+ VL +PD ET ++C H D CR +V+V Q+VY I+AP+T+YHQALKGVR YWIGF Sbjct 117 LRDVLATPDIETQSLCLHTDASCRYRGDVAVYQDVYAIDAPTTLYHQALKGVRTAYWIGF 176 Query 180 DTTQFMFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTN 239 DTT FM+ ++AG+YP Y+TNWADE+VLE+RNIGLCS K+ EG S RKK LK Sbjct 177 DTTPFMYDALAGAYPLYSTNWADEQVLESRNIGLCSDKVSEGGKKGRSILRKKFLKQSDR 236 Query 240 VYFSVGSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGITG 299 V FSVGSTLY E+R LQSWHLPS FHLKGK SFTCRCDT V+CEGYV+KKIT+ PG+TG Sbjct 237 VMFSVGSTLYTESRKLLQSWHLPSTFHLKGKSSFTCRCDTIVSCEGYVLKKITMCPGVTG 296 Query 300 RVNRYTVTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDAQKL 359 + Y VT++ EGF++ K+TDT++GERVSF VCTY+P ++CDQMTGILAT++ +DAQKL Sbjct 297 KPIGYAVTHHKEGFVVGKVTDTIRGERVSFAVCTYVPTTLCDQMTGILATEVTADDAQKL 356 Query 360 LVGLNQRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKLAFG 419 LVGLNQRIVVNG+T RNTNTM+NYLLP VA L+KWAKE K D DE+PLN R+R L Sbjct 357 LVGLNQRIVVNGRTQRNTNTMKNYLLPLVAQALAKWAKEAKQDMEDERPLNERQRTLTCL 416 Query 420 CLWAFKTKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTTSLPMSLRQKVKLLLVKKTNK 479 C WAFK K H+ Y+ P TQ+IVKV EF++FP+ S+W+ + +SLRQK+K++L + Sbjct 417 CCWAFKRNKRHAIYKRPDTQSIVKVPCEFTSFPLVSLWSAGMSISLRQKLKMMLQARQPT 476 Query 480 PVVTITDTAVKNAQEAYNEAVETAEAEEKAKALPPLKPT 518 + +T+ ++ A EAV+TA AE A P + T Sbjct 477 QIAAVTEELIQEAAAVEQEAVDTANAELDHAAWPSIVDT 515 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Mena II)] Sequence ID: Q9WJC7.3 Length: 2499 Range 1: 1 to 518 Score:647 bits(1668), Expect:0.0, Method:Compositional matrix adjust., Identities:306/528(58%), Positives:393/528(74%), Gaps:11/528(2%) Query 1 MEKPTVHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPTS 60 MEK VHVD++ SPF+ LQ+SFPQFE+ A+QVT NDHANARAFSHLASKLIE E+ S Sbjct 1 MEK--VHVDIEEDSPFLRALQRSFPQFEVEAKQVTDNDHANARAFSHLASKLIETEVEPS 58 Query 61 VTILDIGSAPARRMYSEHKYHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLAD 120 TILDIGSAPARRMYS+HKYHC+CPM+ EDPDRL YA++L EIT+K L K+ + Sbjct 59 DTILDIGSAPARRMYSKHKYHCICPMKCAEDPDRLFKYAAKLKKNCKEITDKELDKKMKE 118 Query 121 LKSVLESPDAETGTICFHNDVICRTTAEVSVMQNVY-INAPSTIYHQALKGVRKLYWIGF 179 L V+ PD ET TIC H+D CR +V+V Q+VY ++ P+++YHQA KGVR YWIGF Sbjct 119 LAEVMNDPDLETETICLHDDETCRFEGQVAVYQDVYAVDGPTSLYHQANKGVRVAYWIGF 178 Query 180 DTTQFMFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTN 239 DTT FMF ++AG+YPSY+TNWADE VL ARNIGLCS+ + E + +S RKK LKP N Sbjct 179 DTTPFMFKNLAGAYPSYSTNWADETVLTARNIGLCSSDVMERSRRGMSILRKKFLKPSNN 238 Query 240 VYFSVGSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGITG 299 V FSVGST+Y E R L+SWHLPSVFHL+GKQ++TCRC+T V+C+GYVVK+I ISPG+ G Sbjct 239 VLFSVGSTIYHEKRDLLRSWHLPSVFHLRGKQNYTCRCETIVSCDGYVVKRIAISPGLYG 298 Query 300 RVNRYTVTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDAQKL 359 + + Y T + EGFL CK+TDT+ GERVSFPVCTY+P ++CDQMTGILATD+ +DAQKL Sbjct 299 KPSGYAATMHREGFLCCKVTDTLNGERVSFPVCTYVPATLCDQMTGILATDVSADDAQKL 358 Query 360 LVGLNQRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKLAFG 419 LVGLNQRIVVNG+T RNTNTM+NYLLP VA ++WAKE K D DE+PL +R+R+L G Sbjct 359 LVGLNQRIVVNGRTQRNTNTMKNYLLPVVAQAFARWAKEYKEDQEDERPLGLRDRQLVMG 418 Query 420 CLWAFKTKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTTSLPMSLRQKVKLLLVKKTNK 479 C WAF+ KI S Y+ P TQTI+KV ++F +F + + +++L + LR ++K LL + ++ Sbjct 419 CCWAFRKHKITSVYKRPDTQTIIKVNSDFHSFVLPRIGSSTLEIGLRTRIKKLLEEPVDR 478 Query 480 PVVTITDTAVKNAQEAYNEAVETAEAEEKAKALPPLKPTAPPVAEDVK 527 P + D + QEA N A+ ++ K L+ PP++ DV+ Sbjct 479 PPLITAD----DIQEAKN----AADEAKEVKEAEELRAALPPLSADVE 518 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain CPA201)] Sequence ID: Q8V294.3 Length: 2497 Range 1: 1 to 518 Score:644 bits(1661), Expect:0.0, Method:Compositional matrix adjust., Identities:304/528(58%), Positives:392/528(74%), Gaps:11/528(2%) Query 1 MEKPTVHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPTS 60 MEK VHVD++ SPF+ LQ+SFPQFE+ A+QVT NDHANARAFSHLASKLIE E+ S Sbjct 1 MEK--VHVDIEEDSPFLRALQRSFPQFEVEAKQVTDNDHANARAFSHLASKLIETEVEPS 58 Query 61 VTILDIGSAPARRMYSEHKYHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLAD 120 TILDIGSAPARRMYS+HKYHC+CPM+ EDPDRL YA++L +IT+K L K+ + Sbjct 59 DTILDIGSAPARRMYSKHKYHCICPMKCAEDPDRLFKYAAKLKKNCKDITDKELDKKMKE 118 Query 121 LKSVLESPDAETGTICFHNDVICRTTAEVSVMQNVY-INAPSTIYHQALKGVRKLYWIGF 179 L V+ PD ET TIC H+D CR +V+V Q+VY ++ P+++YHQA KGVR YWIGF Sbjct 119 LAEVMSDPDLETETICLHDDETCRFEGQVAVYQDVYAVDGPTSLYHQANKGVRVAYWIGF 178 Query 180 DTTQFMFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTN 239 DTT FMF ++AG+YPSY+TNWADE VL ARNIGLCS+ + E + +S RKK LKP N Sbjct 179 DTTPFMFKNLAGAYPSYSTNWADETVLTARNIGLCSSDVMERSRRGMSILRKKFLKPSNN 238 Query 240 VYFSVGSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGITG 299 V FSVGST+Y E R L+SWHLPSVFHL+GKQ++TCRC+T V+C+GYVVK+I ISPG+ G Sbjct 239 VLFSVGSTIYHEKRDLLRSWHLPSVFHLRGKQNYTCRCETIVSCDGYVVKRIAISPGLYG 298 Query 300 RVNRYTVTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDAQKL 359 + + Y T + EGFL CK+TDT+ GERVSFPVCTY+P ++CDQMTGILATD+ +DAQKL Sbjct 299 KPSGYAATMHREGFLCCKVTDTLDGERVSFPVCTYVPATLCDQMTGILATDVSADDAQKL 358 Query 360 LVGLNQRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKLAFG 419 LVGLNQRIVVNG+T RNTNTM+NYLLP VA ++WAKE K D DE+PL +R+R+L G Sbjct 359 LVGLNQRIVVNGRTQRNTNTMKNYLLPVVAQAFARWAKEYKEDQEDERPLGLRDRQLVMG 418 Query 420 CLWAFKTKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTTSLPMSLRQKVKLLLVKKTNK 479 C WAF+ KI S Y+ P TQTI+KV ++F +F + + + +L + LR +++ LL + ++ Sbjct 419 CCWAFRKHKITSVYKRPDTQTIIKVNSDFHSFVLPRIGSNTLEIGLRTRIRKLLEEPVDR 478 Query 480 PVVTITDTAVKNAQEAYNEAVETAEAEEKAKALPPLKPTAPPVAEDVK 527 P + D + QEA N A+ ++ K L+ PP++ DV+ Sbjct 479 PPLITAD----DIQEAKN----AADEAKEVKEAEELRAALPPLSADVE 518 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Western equine encephalitis virus] Sequence ID: P13896.3 Length: 2467 Range 1: 1 to 527 Score:643 bits(1659), Expect:0.0, Method:Compositional matrix adjust., Identities:323/535(60%), Positives:398/535(74%), Gaps:9/535(1%) Query 1 MEKPTVHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPTS 60 ME+ +HVD+D SP+V LQ++FPQFEI A+QVT NDHANARAFSH+A+KLIE E+ Sbjct 1 MER--IHVDLDADSPYVKSLQRTFPQFEIEARQVTDNDHANARAFSHVATKLIESEVDRD 58 Query 61 VTILDIGSAPARRMYSEHKYHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLAD 120 ILDIGSAP R +S H+YHC+CPM S EDPDRL YA RL K +IT+K + K AD Sbjct 59 QVILDIGSAPVRHAHSNHRYHCICPMISAEDPDRLQRYAERL--KKSDITDKNIASKAAD 116 Query 121 LKSVLESPDAETGTICFHNDVICRTTAEVSVMQNVY-INAPSTIYHQALKGVRKLYWIGF 179 L V+ +PDAET ++C H D CR V+V Q+VY ++AP++IYHQALKGVR +YWIGF Sbjct 117 LLEVMSTPDAETPSLCMHTDATCRYFGSVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGF 176 Query 180 DTTQFMFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTN 239 DTT FM+ +MAGSYP+YNTNWADERVLEARNIGL ++ L+E +GKLS RKK L+P Sbjct 177 DTTPFMYKNMAGSYPTYNTNWADERVLEARNIGLGNSDLQESRLGKLSILRKKRLQPTNK 236 Query 240 VYFSVGSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGITG 299 + FSVGST+Y E+R+ L+SWHLP+VFHLKGK +FT RC T V+CEGYV+KKITISPG+ G Sbjct 237 IIFSVGSTIYTEDRSLLRSWHLPNVFHLKGKSNFTGRCGTIVSCEGYVIKKITISPGLYG 296 Query 300 RVNRYTVTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDAQKL 359 +V T + EGFL CK+TDT++GERVSF VCTY+P ++CDQMTGILATD+ +DAQKL Sbjct 297 KVENLASTMHREGFLSCKVTDTLRGERVSFAVCTYVPATLCDQMTGILATDVSVDDAQKL 356 Query 360 LVGLNQRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKLAFG 419 LVGLNQRIVVNG+T RNTNTMQNYLLP VA S+WA+E +AD DEK L VRER L G Sbjct 357 LVGLNQRIVVNGRTQRNTNTMQNYLLPVVAQAFSRWAREHRADLDDEKELGVRERTLTMG 416 Query 420 CLWAFKTKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTTSLPMSLRQKVKLLLVKKTNK 479 C WAFKT+KI S Y+ PGTQTI KV A F +F + + + L M R+++KLLL + T K Sbjct 417 CCWAFKTQKITSIYKKPGTQTIKKVPAVFDSFVIPRLTSHGLDMGFRRRLKLLL-EPTVK 475 Query 480 PVVTITDTAVKNAQEAYNEAVETAEAEEKAKALPPLKPTAPPVAEDVKCEVTDLV 534 P IT V++ + EA E A AEE +ALPPL P E V+ EV DL+ Sbjct 476 PAPAITMADVEHLRGLQQEAEEVAAAEEIREALPPLLPEIE--KETVEAEV-DLI 527 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain PE-3.0815)] Sequence ID: Q306W8.3 Length: 2474 Range 1: 1 to 513 Score:640 bits(1651), Expect:0.0, Method:Compositional matrix adjust., Identities:317/518(61%), Positives:386/518(74%), Gaps:6/518(1%) Query 1 MEKPTVHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPTS 60 MEK VHVD+D SP+V LQK FP FEI A QVT NDHANARAFSHLA+KLIE E+ Sbjct 1 MEK--VHVDLDADSPYVKLLQKCFPHFEIEATQVTDNDHANARAFSHLATKLIESEVDPD 58 Query 61 VTILDIGSAPARRMYSEHKYHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLAD 120 ILDIGSAP R +S+HKYHC+CPM S EDPDRL YA +L + ++T++ + K AD Sbjct 59 QVILDIGSAPVRHTHSKHKYHCICPMISAEDPDRLQRYADKL--RKSDVTDRFIASKAAD 116 Query 121 LKSVLESPDAETGTICFHNDVICRTTAEVSVMQNVY-INAPSTIYHQALKGVRKLYWIGF 179 L +V+ +PD ET ++C H D CR V+V Q+VY ++AP++IYHQALKGVR +YWIGF Sbjct 117 LLTVMSTPDVETPSLCMHTDSTCRYHGTVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGF 176 Query 180 DTTQFMFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTN 239 DTT FM+ +MAG+YP+YNTNWADE VLEARNIGLCS+ L E +GK+S RKK L+P Sbjct 177 DTTPFMYKNMAGAYPTYNTNWADESVLEARNIGLCSSDLHEKRLGKISIMRKKKLQPTNK 236 Query 240 VYFSVGSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGITG 299 V FSVGST+Y E R L+SWHLP+VFHLKGK SFT RC+T V+C+GYVVKKITISPGI G Sbjct 237 VVFSVGSTIYTEERILLRSWHLPNVFHLKGKTSFTGRCNTIVSCDGYVVKKITISPGIYG 296 Query 300 RVNRYTVTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDAQKL 359 +V+ T + EGFL CK+TDT++GERVSFPVCTY+P ++CDQMTGILATD+ +DAQKL Sbjct 297 KVDNLASTLHREGFLSCKVTDTLRGERVSFPVCTYVPATLCDQMTGILATDVSVDDAQKL 356 Query 360 LVGLNQRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKLAFG 419 LVGLNQRIVVNG+T RNTNTMQNYLLP VA S+WA+E +AD DEK L VRER L G Sbjct 357 LVGLNQRIVVNGRTQRNTNTMQNYLLPVVAQAFSRWAREYRADLEDEKDLGVRERSLVMG 416 Query 420 CLWAFKTKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTTSLPMSLRQKVKLLLVKKTNK 479 C WAFKT KI S Y+ PGTQTI KV A F++F + + L + LR+++K+LL +K K Sbjct 417 CCWAFKTHKITSIYKKPGTQTIKKVPAVFNSFVIPQFNSYGLNIGLRRRIKMLLEEK-RK 475 Query 480 PVVTITDTAVKNAQEAYNEAVETAEAEEKAKALPPLKP 517 P IT+ V + + EA AEAE ALPPL P Sbjct 476 PAPIITEADVAHLKGMQEEAEAVAEAEAVRAALPPLLP 513 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain Florida 91-469)] Sequence ID: Q4QXJ8.3 Length: 2494 Range 1: 1 to 513 Score:639 bits(1649), Expect:0.0, Method:Compositional matrix adjust., Identities:318/520(61%), Positives:388/520(74%), Gaps:10/520(1%) Query 1 MEKPTVHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPTS 60 MEK VHVD+D SPFV LQ+ FP FEI A QVT NDHANARAFSHLA+KLIE E+ T Sbjct 1 MEK--VHVDLDADSPFVKSLQRCFPHFEIEATQVTDNDHANARAFSHLATKLIEGEVDTD 58 Query 61 VTILDIGSAPARRMYSEHKYHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLAD 120 ILDIGSAP R +S+HKYHC+CPM+S EDPDRL YA +L + ++T+K + K AD Sbjct 59 QVILDIGSAPVRHTHSKHKYHCICPMKSAEDPDRLYRYADKL--RKSDVTDKCIASKAAD 116 Query 121 LKSVLESPDAETGTICFHNDVICRTTAEVSVMQNVY-INAPSTIYHQALKGVRKLYWIGF 179 L +V+ +PDAET ++C H D CR V+V Q+VY ++AP++IY+QALKGVR +YWIGF Sbjct 117 LLTVMSTPDAETPSLCMHTDSTCRYHGSVAVYQDVYAVHAPTSIYYQALKGVRTIYWIGF 176 Query 180 DTTQFMFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTN 239 DTT FM+ +MAG+YP+YNTNWADE VLEARNIGL S+ L E + GK+S RKK L+P Sbjct 177 DTTPFMYKNMAGAYPTYNTNWADESVLEARNIGLGSSDLHEKSFGKVSIMRKKKLQPTNK 236 Query 240 VYFSVGSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGITG 299 V FSVGST+Y E R L+SWHLP+VFHLKGK SFT RC+T V+CEGYVVKKIT+SPGI G Sbjct 237 VIFSVGSTIYTEERILLRSWHLPNVFHLKGKTSFTGRCNTIVSCEGYVVKKITLSPGIYG 296 Query 300 RVNRYTVTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDAQKL 359 +V+ T + EGFL CK+TDT++GERVSFPVCTY+P ++CDQMTGILATD+ +DAQKL Sbjct 297 KVDNLASTMHREGFLSCKVTDTLRGERVSFPVCTYVPATLCDQMTGILATDVSVDDAQKL 356 Query 360 LVGLNQRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKLAFG 419 LVGLNQRIVVNG+T RNTNTMQNYLLP VA S+WA+E +AD DEK L VRER L G Sbjct 357 LVGLNQRIVVNGRTQRNTNTMQNYLLPVVAQAFSRWAREHRADLEDEKGLGVRERSLVMG 416 Query 420 CLWAFKTKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTTSLPMSLRQKVKLLL-VKKTN 478 C WAFKT KI S Y+ PGTQTI KV A F++F + + L + LR+++K+L KK Sbjct 417 CCWAFKTHKITSIYKRPGTQTIKKVPAVFNSFVIPQPTSYGLDIGLRRRIKMLFDAKKAP 476 Query 479 KPVVTITDTA-VKNAQEAYNEAVETAEAEEKAKALPPLKP 517 P++T D A +K Q+ A AEAE ALPPL P Sbjct 477 APIITEADVAHLKGLQDE---AEAVAEAEAVRAALPPLLP 513 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain PE-0.0155)] Sequence ID: Q306W6.3 Length: 2471 Range 1: 1 to 513 Score:637 bits(1642), Expect:0.0, Method:Compositional matrix adjust., Identities:316/518(61%), Positives:383/518(73%), Gaps:6/518(1%) Query 1 MEKPTVHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPTS 60 MEK VHVD+D SP+V LQK FP FEI A QVT NDHANARAFSHLA+KLIE E+ Sbjct 1 MEK--VHVDLDADSPYVKSLQKCFPHFEIEATQVTDNDHANARAFSHLATKLIESEVDPD 58 Query 61 VTILDIGSAPARRMYSEHKYHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLAD 120 ILDIGSAP R +S+HKYHC+CPM S EDPDRL YA +L + ++T++ + K AD Sbjct 59 QVILDIGSAPVRHTHSKHKYHCICPMISAEDPDRLHRYADKL--RKSDVTDRFIASKAAD 116 Query 121 LKSVLESPDAETGTICFHNDVICRTTAEVSVMQNVY-INAPSTIYHQALKGVRKLYWIGF 179 L +V+ +PD ET ++C H D CR V+V Q+VY ++AP++IYHQALKGVR +YWIGF Sbjct 117 LLTVMSTPDVETPSLCMHTDSTCRYHGTVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGF 176 Query 180 DTTQFMFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTN 239 DTT FM+ +MAG+YP+YNTNWADE VLEARNIGLCS+ L E GK+S RKK L+P Sbjct 177 DTTPFMYKNMAGAYPTYNTNWADESVLEARNIGLCSSDLHEQRFGKISIMRKKKLQPTNK 236 Query 240 VYFSVGSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGITG 299 V FSVGST+Y E R L+SWHLP+VFHLKGK SFT RC+T V+CEGYVVKKITISPGI G Sbjct 237 VVFSVGSTIYTEERILLRSWHLPNVFHLKGKTSFTGRCNTIVSCEGYVVKKITISPGIYG 296 Query 300 RVNRYTVTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDAQKL 359 +V+ T + EGFL CK+TDT++GERVSFPVCTY+P ++CDQMTGILATD+ +DAQKL Sbjct 297 KVDNLASTMHREGFLSCKVTDTLRGERVSFPVCTYVPATLCDQMTGILATDVSVDDAQKL 356 Query 360 LVGLNQRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKLAFG 419 LVGLNQRIVVNG+T RNTNTM NYLLP VA S+WA+E AD DEK L VRER L G Sbjct 357 LVGLNQRIVVNGRTQRNTNTMPNYLLPIVAQAFSRWAREYHADLEDEKDLGVRERSLVMG 416 Query 420 CLWAFKTKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTTSLPMSLRQKVKLLLVKKTNK 479 C WAFKT KI S Y+ PGTQT KV A F++F + + + L + LR+++K+LL +K K Sbjct 417 CCWAFKTHKITSIYKKPGTQTTKKVPAVFNSFVVPQLTSYGLDIELRRRIKMLLEEK-KK 475 Query 480 PVVTITDTAVKNAQEAYNEAVETAEAEEKAKALPPLKP 517 P IT+ V + + EA AEAE ALPPL P Sbjct 476 PAPIITEADVAHLKGMQEEAEVVAEAEAIRAALPPLLP 513 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sleeping disease virus] Sequence ID: Q8QL53.1 Length: 2593 Range 1: 14 to 548 Score:407 bits(1046), Expect:4e-125, Method:Compositional matrix adjust., Identities:232/540(43%), Positives:318/540(58%), Gaps:17/540(3%) Query 5 TVHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPT-SVTI 63 TV VD+ P + Q + +FP FE+VA + NDHA ARAFSHLA+K IE +I V + Sbjct 14 TVTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIDGRQVIV 73 Query 64 LDIGSAPARRMYSEHK--YHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLADL 121 DIGSAPARR+ + YH VCP + EDP+RL +YA +L + + D++ DL Sbjct 74 ADIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEKGDGHLVSDRITDL 133 Query 122 KSVLESPDA--ETGTICFHNDVICRTTAEVSVMQNVY-INAPSTIYHQALKGVRKLYWIG 178 K VLE+PD ET +IC ++DV C+ A+++V Q+VY ++APSTIY QA KG R +YWIG Sbjct 134 KDVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIG 193 Query 179 FDTTQFMFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGT 238 F+ F +MAGS+P Y+ NW+D VL A+N+ LC + L E ++ FR K L P Sbjct 194 FEPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSG 253 Query 239 NVYFSVGSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGIT 298 +++SVGST Y E+R L+SWHLPS FH +TCRCDT V+C GYVVKKITI GI Sbjct 254 EIHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGIV 313 Query 299 GR-VNRYTVTN-NSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDA 356 GR N T+ + +G ++ K +DT+ E+VSFPV TYIP ICDQMT + A ++ D Sbjct 314 GRPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTADPVKYPDV 373 Query 357 QKLLVGLNQRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKL 416 KLLVGLNQRIVVNG T RN N+M N L+P A L WA E + D DE+ + Sbjct 374 VKLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDMEDEQDMYGVTSVT 433 Query 417 AFGCLW-AFKTKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTTSLPMSLRQKVKLLLVK 475 + C+ A+ ++ H+FYR P + + V A+F+ SL + L+ Sbjct 434 TWICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTG-----SLRASLSATYLNLPLKQLLL 488 Query 476 KTNKPVVTITDTAVKNAQEAY-NEAVETAEAEEKAKALPPLKPT--APPVAEDVKCEVTD 532 T K + D A+ + EA ++A E E E+ P+ A + +D + EV D Sbjct 489 NTLKRAIKPGDQALADETEARAHDAAEVHELTEEEGRQQAANPSYIADVLGQDDEEEVDD 548 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Salmon pancreas disease virus] Sequence ID: Q8JJX1.1 Length: 2601 Range 1: 14 to 532 Score:405 bits(1041), Expect:2e-124, Method:Compositional matrix adjust., Identities:224/524(43%), Positives:315/524(60%), Gaps:15/524(2%) Query 5 TVHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPT-SVTI 63 TV V++ P + Q + +FP FE+VA + NDHA ARAFSHLA+K IE +I V + Sbjct 14 TVTVNLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIGGRQVIV 73 Query 64 LDIGSAPARRMYSEHK--YHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLADL 121 DIGSAPARR+ + YH VCP + EDP+RL +YA +L +++K+ DL Sbjct 74 ADIGSAPARRIGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVERGDGHLVNEKITDL 133 Query 122 KSVLESPDA--ETGTICFHNDVICRTTAEVSVMQNVY-INAPSTIYHQALKGVRKLYWIG 178 K VLE+PD ET +IC ++DV C+ A+++V Q+VY ++APSTIY QA KG R +YWIG Sbjct 134 KDVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIG 193 Query 179 FDTTQFMFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGT 238 F+ F +MAGS+P Y+ NW+D VL A+N+ LC + L E ++ FR K L P Sbjct 194 FEPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSG 253 Query 239 NVYFSVGSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGIT 298 +++SVGST Y E+R L+SWHLPS FH +TCRCDT V+C GYVVKKITI GI Sbjct 254 EIHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGIV 313 Query 299 G--RVNRYTVTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDA 356 G + + +G ++ K +DT+ E+VSFPV TYIP ICDQMT + A ++ DA Sbjct 314 GIPAKEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTANPVKYSDA 373 Query 357 QKLLVGLNQRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKL 416 KLLVGLNQRIVVNG T RN N+M N L+P A L WA E + D DE+ L Sbjct 374 VKLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEVRRDMEDEQDLYGITSVT 433 Query 417 AFGCLW-AFKTKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTTSLPMSLRQKVKLLLVK 475 + C+ A+ ++ H+FYR P + + V A+F+ + + + + +++ L +K Sbjct 434 TWICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTG-SLRAALSATYLNLPLKQLLLNTLK 492 Query 476 KTNKPVVTITDTAVKNAQEAY-NEAVETAEAEEKAKALPPLKPT 518 + KP+ D A+ + EA ++A E E E+ + P+ Sbjct 493 RAIKPM----DQAIADETEALAHDAAEVHELTEEERRQQAANPS 532