# hmmsearch :: search profile(s) against a sequence database # HMMER 3.2.1 (June 2018); http://hmmer.org/ # Copyright (C) 2018 Howard Hughes Medical Institute. # Freely distributed under the BSD open source license. # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: profile # target sequence database: full.fasta # number of worker threads: 1 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: alig_pr9_edit [M=465] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0 1296.8 15.1 0 1288.5 6.0 2.0 2 GAG_HV1BR (P03348) 0 1294.0 5.8 0 1293.8 5.8 1.0 1 Q72497_9HIV1 (Q72497) 0 1292.4 15.7 0 1284.2 6.6 2.0 2 GAG_HV1B1 (P03347) 0 1292.1 6.0 0 1292.0 6.0 1.0 1 GAG_HV1H2 (P04591) 0 1291.3 6.4 0 1291.1 6.4 1.0 1 GAG_HV1B9 (Q73367) 0 1290.0 6.3 0 1289.8 6.3 1.0 1 GAG_HV1Y2 (P35962) 0 1287.0 6.0 0 1286.8 6.0 1.0 1 GAG_HV1A2 (P03349) 0 1284.1 6.2 0 1283.9 6.2 1.0 1 GAG_HV1EL (P04592) 0 1280.2 6.7 0 1280.1 6.7 1.0 1 GAG_HV190 (O93182) 0 1271.7 5.8 0 1271.6 5.8 1.0 1 GAG_HV1RH (P05890) 0 1263.0 7.1 0 1262.5 7.1 1.2 1 GAG_HV1MA (P04594) 0 1257.2 5.4 0 1257.0 5.4 1.0 1 W8EEZ4_9PLVG (W8EEZ4) 0 1250.1 6.0 0 1249.9 6.0 1.0 1 A8E117_9HIV1 (A8E117) 0 1243.7 5.4 0 1243.5 5.4 1.0 1 GAG_HV193 (O89291) 0 1243.0 6.1 0 1243.0 6.1 1.9 2 GAG_HV1ET (Q75001) 0 1241.5 7.3 0 1241.3 7.3 1.0 1 GAG_HV192 (O12157) 0 1240.6 6.6 0 1240.4 6.6 1.0 1 Q9YX54_9HIV1 (Q9YX54) 0 1228.2 4.0 0 1228.0 4.0 1.0 1 Q9Q6W4_9HIV1 (Q9Q6W4) 0 1219.6 7.4 0 1219.4 7.4 1.0 1 GAG_SIVEK (Q1A250) 0 1215.5 5.0 0 1215.1 5.0 1.1 1 POL_HV1BR (P03367) 0 1214.6 4.6 0 1214.4 4.6 1.0 1 GAG_SIVMB (Q1A268) 0 1211.2 5.6 0 1210.7 5.6 1.1 1 POL_HV1B1 (P03366) 0 1211.0 5.7 0 1210.4 5.7 1.2 1 POL_HV1H2 (P04585) 0 1210.8 6.0 0 1210.4 6.0 1.1 1 POL_HV1Y2 (P35963) 0 1206.4 2.5 0 1206.2 2.5 1.0 1 GAG_HV1YF (O91079) 0 1206.2 5.8 0 1205.8 5.8 1.1 1 POL_HV1B9 (Q73368) 0 1205.8 5.5 0 1205.4 5.5 1.1 1 POL_HV1A2 (P03369) 0 1202.5 6.2 0 1202.1 6.2 1.1 1 POL_HV1EL (P04589) 0 1191.8 1.8 0 1191.7 1.8 1.0 1 GAG_SIVCZ (P17282) 0 1191.0 7.2 0 1190.5 7.2 1.1 1 POL_HV190 (O93215) 0 1188.8 5.8 0 1188.3 5.8 1.1 1 POL_HV1RH (P05959) 0 1180.5 6.7 0 1179.9 6.7 1.2 1 POL_HV1MA (P04588) 0 1180.4 3.3 0 1180.2 3.3 1.0 1 GAG_HV1YB (Q9IDV8) 0 1165.7 6.9 0 1165.2 6.9 1.1 1 POL_HV1ET (Q75002) 0 1163.3 6.7 0 1162.9 6.7 1.1 1 POL_HV192 (O12158) 0 1159.1 4.9 0 1158.7 4.9 1.1 1 POL_HV193 (O89290) 0 1157.1 6.5 0 1156.7 6.5 1.1 1 C7TQ69_9HIV1 (C7TQ69) 0 1154.2 4.8 0 1153.7 4.8 1.1 1 C7TQ75_9HIV1 (C7TQ75) 0 1139.6 6.1 0 1139.1 6.1 1.1 1 POL_SIVEK (Q1A249) 0 1133.0 4.2 0 1132.6 4.2 1.1 1 POL_SIVMB (Q1A267) 0 1129.2 1.6 0 1128.8 1.6 1.1 1 POL_HV1YF (O91080) 0 1125.4 6.5 0 1125.0 6.5 1.1 1 C7TQ93_9HIV1 (C7TQ93) 0 1114.0 3.5 0 1113.5 3.5 1.1 1 POL_HV1YB (Q9IDV9) 3.2e-302 995.8 6.2 3.8e-302 995.6 6.2 1.0 1 GAG_HV1MV (Q79665) 8.7e-298 981.1 5.8 1e-297 980.9 5.8 1.0 1 GAG_HV1AN (Q77372) 3e-289 952.9 4.7 4e-289 952.5 4.7 1.1 1 POL_HV1MV (Q79666) 2.4e-287 946.6 15.0 7.7e-260 855.6 4.6 2.1 2 POL_SIVCZ (P17283) 2.4e-287 946.6 15.0 7.7e-260 855.6 4.6 2.1 2 POL_SIVCZ (P17283) 5.7e-283 932.1 5.1 7.6e-283 931.7 5.1 1.1 1 POL_HV1AN (Q77373) 5.1e-261 859.5 8.5 3.4e-260 856.8 8.5 1.9 1 GAG_SIVTN (Q8AII2) 3.2e-251 827.1 6.2 1.2e-250 825.3 6.2 1.8 1 POL_SIVTN (Q8AII1) 2.9e-217 714.9 5.3 3.5e-217 714.6 5.3 1.0 1 GAG_SIVSP (P19504) 5.9e-214 703.9 3.1 7.4e-214 703.6 3.1 1.1 1 Q87107_SIVSA (Q87107) 6.5e-214 703.8 4.1 9e-214 703.3 4.1 1.1 1 POL_SIVSP (P19505) 7.9e-211 693.6 3.1 9.7e-211 693.3 3.1 1.0 1 GAG_HV2RO (P04590) 3.6e-209 688.1 1.9 4.3e-209 687.8 1.9 1.0 1 GAG_HV2BE (P18095) 6.9e-209 687.2 5.2 8.5e-209 686.9 5.2 1.0 1 Q88015_9PLVG (Q88015) 9.8e-208 683.3 1.5 1.6e-207 682.7 1.5 1.3 1 POL_HV2RO (P04584) 2.5e-207 682.0 4.1 3e-207 681.7 4.1 1.0 1 GAG_HV2UC (Q76633) 4.3e-207 681.2 3.8 5.4e-207 680.9 3.8 1.0 1 A0A1B4WRK1_SIV (A0A1B4WRK1) 1.3e-204 673.0 2.8 1.9e-204 672.5 2.8 1.1 1 POL_HV2UC (Q76634) 1.8e-204 672.5 0.7 2.8e-204 671.9 0.7 1.2 1 POL_HV2BE (P18096) 4.6e-198 651.4 4.2 5.6e-198 651.1 4.2 1.0 1 P89903_SIVTA (P89903) 1.8e-196 646.1 2.0 2.2e-196 645.8 2.0 1.0 1 Q8Q7J5_SIV (Q8Q7J5) 4.9e-143 469.4 13.3 2.1e-142 467.3 13.3 1.8 1 B7UES0_SIV (B7UES0) 2.6e-141 463.7 10.6 5.2e-140 459.4 10.4 2.0 1 B3CKG7_SIV (B3CKG7) 0.00037 10.1 0.0 0.00055 9.6 0.0 1.1 1 A0A163J913_ABSGL (A0A163J913) 0.00075 9.1 0.0 0.00082 9.0 0.0 1.1 1 A0A4Y7LBT4_PAPSO (A0A4Y7LBT4) Domain annotation for each sequence (and alignments): >> GAG_HV1BR (P03348) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 1288.5 6.0 0 0 1 462 [. 1 459 [. 1 459 [. 1.00 2 ! 13.9 1.6 2.7e-05 2.7e-05 451 465 .] 460 474 .. 460 474 .. 0.98 Alignments for each domain: == domain 1 score: 1288.5 bits; conditional E-value: 0 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgArAsvLsgg+Ld+wekirLrpggkkky+lkh+VwAsreLerfA+npgLletsegcrqilgqlqp+lqtgseeLrsL+ntva+Lycvhq+i++kd GAG_HV1BR 1 MGARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKD 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqktqqaaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLnt 192 tkeALdkiee eqnksk+k+qqaaad+g+ssqvsqnypiVqn+qgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLnt GAG_HV1BR 97 TKEALDKIEE--EQNKSKKKAQQAAADTGHSSQVSQNYPIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNT 190 **********..************************************************************************************ PP alig_pr9_edit 193 VgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtnnppipVgdiykrwiilgLnkiVrmyspvsILdIk 288 VgghqaAmqmLketIneeAAewdr+hpvhagpiapgqmreprgsdIAgttstlqeqi+wmtnnppipVg+iykrwiilgLnkiVrmysp+sILdI+ GAG_HV1BR 191 VGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIR 286 ************************************************************************************************ PP alig_pr9_edit 289 qgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntataimmqkg 384 qgpkepfrdyVdrfyktLrAeqA+qeVknwmtetlLVqnanpdcktiLkALgp+AtleemmtAcqgVggp+hkArvLAeAmsqv+n+at immq+g GAG_HV1BR 287 QGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSAT-IMMQRG 381 ****************************************************************************************9.****** PP alig_pr9_edit 385 nfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanfLgkiwpsskgrpgnflqsrpeptApp 462 nf++qr+i+kcfncgkegh+ArncrAprkkgcwkcgkeghqmkdcterqanfLgkiwps+kgrpgnflqsrpeptApp GAG_HV1BR 382 NFRNQRKIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSYKGRPGNFLQSRPEPTAPP 459 *****************************************************************************9 PP == domain 2 score: 13.9 bits; conditional E-value: 2.7e-05 alig_pr9_edit 451 flqsrpeptAppees 465 flqsrpeptAppees GAG_HV1BR 460 FLQSRPEPTAPPEES 474 9*************9 PP >> Q72497_9HIV1 (Q72497) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 1293.8 5.8 0 0 1 465 [] 1 462 [. 1 462 [. 1.00 Alignments for each domain: == domain 1 score: 1293.8 bits; conditional E-value: 0 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgArAsvLsgg+Ld+wekirLrpggkk+y+lkh+VwAsreLerfA+npgLletsegcrqilgqlqp+lqtgseeLrsL+nt+avLycvhq+idvkd Q72497_9HIV1 1 MGARASVLSGGELDKWEKIRLRPGGKKQYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTIAVLYCVHQRIDVKD 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqktqqaaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLnt 192 tkeALdkiee eqnksk+k+qqaaad+gn+sqvsqnypiVqn+qgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLnt Q72497_9HIV1 97 TKEALDKIEE--EQNKSKKKAQQAAADTGNNSQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNT 190 **********..************************************************************************************ PP alig_pr9_edit 193 VgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtnnppipVgdiykrwiilgLnkiVrmyspvsILdIk 288 VgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqi+wmt+nppipVg+iykrwiilgLnkiVrmysp+sILdI+ Q72497_9HIV1 191 VGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIR 286 ************************************************************************************************ PP alig_pr9_edit 289 qgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntataimmqkg 384 qgpkepfrdyVdrfyktLrAeqA+qeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggp+hkArvLAeAmsqv+n+at im qkg Q72497_9HIV1 287 QGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQGVGGPGHKARVLAEAMSQVTNPAT-IMIQKG 381 ****************************************************************************************9.****** PP alig_pr9_edit 385 nfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanfLgkiwpsskgrpgnflqsrpeptAppees 465 nf++qr+++kcfncgkegh+A+ncrAprkkgcwkcgkeghqmkdcterqanfLgkiwps+kgrpgnflqsrpeptAppees Q72497_9HIV1 382 NFRNQRKTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEES 462 ********************************************************************************9 PP >> GAG_HV1B1 (P03347) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 1284.2 6.6 0 0 1 462 [. 1 459 [. 1 459 [. 1.00 2 ! 13.9 1.6 2.7e-05 2.7e-05 451 465 .] 460 474 .. 460 474 .. 0.98 Alignments for each domain: == domain 1 score: 1284.2 bits; conditional E-value: 0 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgArAsvLsgg+Ld+wekirLrpggkkky+lkh+VwAsreLerfA+npgLletsegcrqilgqlqp+lqtgseeLrsL+ntva+Lycvhq+i++kd GAG_HV1B1 1 MGARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKD 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqktqqaaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLnt 192 tkeALdkiee eqnksk+k+qqaaad+g+ssqvsqnypiVqn+qgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLnt GAG_HV1B1 97 TKEALDKIEE--EQNKSKKKAQQAAADTGHSSQVSQNYPIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNT 190 **********..************************************************************************************ PP alig_pr9_edit 193 VgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtnnppipVgdiykrwiilgLnkiVrmyspvsILdIk 288 VgghqaAmqmLketIneeAAewdr+hpvhagpiapgqmreprgsdIAgttstlqeqi+wmtnnppipVg+iykrwiilgLnkiVrmysp+sILdI+ GAG_HV1B1 191 VGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIR 286 ************************************************************************************************ PP alig_pr9_edit 289 qgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntataimmqkg 384 qgpkepfrdyVdrfyktLrAeqA+qeVknwmtetlLVqnanpdcktiLkALgp+AtleemmtAcqgVggp+hkArvLAeAmsqv+ntat immq+g GAG_HV1B1 287 QGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNTAT-IMMQRG 381 ****************************************************************************************9.****** PP alig_pr9_edit 385 nfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanfLgkiwpsskgrpgnflqsrpeptApp 462 nf++qr+ +kcfncgkegh ArncrAprkkgcwkcgkeghqmkdcterqanfLgkiwps+kgrpgnflqsrpeptApp GAG_HV1B1 382 NFRNQRKMVKCFNCGKEGHTARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSYKGRPGNFLQSRPEPTAPP 459 *****************************************************************************9 PP == domain 2 score: 13.9 bits; conditional E-value: 2.7e-05 alig_pr9_edit 451 flqsrpeptAppees 465 flqsrpeptAppees GAG_HV1B1 460 FLQSRPEPTAPPEES 474 9*************9 PP >> GAG_HV1H2 (P04591) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 1292.0 6.0 0 0 1 465 [] 1 462 [. 1 462 [. 1.00 Alignments for each domain: == domain 1 score: 1292.0 bits; conditional E-value: 0 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgArAsvLsgg+Ld+wekirLrpggkkky+lkh+VwAsreLerfA+npgLletsegcrqilgqlqp+lqtgseeLrsL+ntva+Lycvhq+i++kd GAG_HV1H2 1 MGARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKD 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqktqqaaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLnt 192 tkeALdkiee eqnksk+k+qqaaad+g+s+qvsqnypiVqn+qgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLnt GAG_HV1H2 97 TKEALDKIEE--EQNKSKKKAQQAAADTGHSNQVSQNYPIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNT 190 **********..************************************************************************************ PP alig_pr9_edit 193 VgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtnnppipVgdiykrwiilgLnkiVrmyspvsILdIk 288 VgghqaAmqmLketIneeAAewdr+hpvhagpiapgqmreprgsdIAgttstlqeqi+wmtnnppipVg+iykrwiilgLnkiVrmysp+sILdI+ GAG_HV1H2 191 VGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIR 286 ************************************************************************************************ PP alig_pr9_edit 289 qgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntataimmqkg 384 qgpkepfrdyVdrfyktLrAeqA+qeVknwmtetlLVqnanpdcktiLkALgp+AtleemmtAcqgVggp+hkArvLAeAmsqv+n+at immq+g GAG_HV1H2 287 QGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSAT-IMMQRG 381 ****************************************************************************************9.****** PP alig_pr9_edit 385 nfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanfLgkiwpsskgrpgnflqsrpeptAppees 465 nf++qr+i+kcfncgkegh ArncrAprkkgcwkcgkeghqmkdcterqanfLgkiwps+kgrpgnflqsrpeptAppees GAG_HV1H2 382 NFRNQRKIVKCFNCGKEGHTARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSYKGRPGNFLQSRPEPTAPPEES 462 ********************************************************************************9 PP >> GAG_HV1B9 (Q73367) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 1291.1 6.4 0 0 1 465 [] 1 462 [. 1 462 [. 1.00 Alignments for each domain: == domain 1 score: 1291.1 bits; conditional E-value: 0 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgArAsvLsgg+Ld+wekirLrpggkkky+lkh+VwAsreLerfA+np+Lletsegcrqilgqlq +lqtgseeL+sL+ntva+Lycvhq+i+vkd GAG_HV1B9 1 MGARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPSLLETSEGCRQILGQLQSSLQTGSEELKSLYNTVATLYCVHQRIEVKD 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqktqqaaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLnt 192 tkeALdkiee eqnksk+k+qqaaad+gnssqvsqnypiVqn+qgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLnt GAG_HV1B9 97 TKEALDKIEE--EQNKSKKKAQQAAADTGNSSQVSQNYPIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNT 190 **********..************************************************************************************ PP alig_pr9_edit 193 VgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtnnppipVgdiykrwiilgLnkiVrmyspvsILdIk 288 VgghqaAmqmLketIneeAAewdrlhpv+agp+apgqmreprgsdIAgttstlqeqi+wmtnnppipVg+iykrwiilgLnkiVrmysp sILdIk GAG_HV1B9 191 VGGHQAAMQMLKETINEEAAEWDRLHPVQAGPVAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPSSILDIK 286 ************************************************************************************************ PP alig_pr9_edit 289 qgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntataimmqkg 384 qgpkepfrdyVdrfyktLrAeqA+qeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggp+hkArvLAeAmsqv+n+at immq+g GAG_HV1B9 287 QGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSAT-IMMQRG 381 ****************************************************************************************9.****** PP alig_pr9_edit 385 nfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanfLgkiwpsskgrpgnflqsrpeptAppees 465 nf++qr+++kcfncgkegh+A+ncrAprkkgcwkcgkeghqmkdcterqanfLgkiwps+kgrpgnflqsrpeptAppees GAG_HV1B9 382 NFRNQRKTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEES 462 ********************************************************************************9 PP >> GAG_HV1Y2 (P35962) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 1289.8 6.3 0 0 1 465 [] 1 462 [. 1 462 [. 1.00 Alignments for each domain: == domain 1 score: 1289.8 bits; conditional E-value: 0 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgArAsvLs g+Ld+wekirLrpggkk+yrlkh+VwAsreLerfA++pgLletsegcrqilgqlqp+lqtgseeLrsL+ntva+Lycvhqki+vkd GAG_HV1Y2 1 MGARASVLSAGELDKWEKIRLRPGGKKQYRLKHIVWASRELERFAVDPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTVATLYCVHQKIEVKD 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqktqqaaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLnt 192 tkeAL+kiee eqnksk+k+qqaaad+gnssqvsqnypiVqn+qgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLnt GAG_HV1Y2 97 TKEALEKIEE--EQNKSKKKAQQAAADTGNSSQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNT 190 **********..************************************************************************************ PP alig_pr9_edit 193 VgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtnnppipVgdiykrwiilgLnkiVrmyspvsILdIk 288 VgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqi+wmtnnppipVg+iykrwiilgLnkiVrmysp+sILdI+ GAG_HV1Y2 191 VGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIR 286 ************************************************************************************************ PP alig_pr9_edit 289 qgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntataimmqkg 384 qgpkepfrdyVdrfyktLrAeqA+qeVknwmtetlLVqnanpdcktiLkALgp+AtleemmtAcqgVggp+hkArvLAeAmsqv+n+at immq+g GAG_HV1Y2 287 QGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSAT-IMMQRG 381 ****************************************************************************************9.****** PP alig_pr9_edit 385 nfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanfLgkiwpsskgrpgnflqsrpeptAppees 465 nf++qr+++kcfncgkegh+A+ncrAprkkgcwkcgkeghqmkdcterqanfLgkiwps+kgrpgnflqsrpeptAp ees GAG_HV1Y2 382 NFRNQRKTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPSEES 462 ********************************************************************************8 PP >> GAG_HV1A2 (P03349) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 1286.8 6.0 0 0 1 465 [] 1 464 [. 1 464 [. 0.99 Alignments for each domain: == domain 1 score: 1286.8 bits; conditional E-value: 0 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgArAsvLsgg+Ld+wekirLrpggkkky+lkh+VwAsreLerfA+npgLletsegcrqilgqlqp+lqtgseeLrsL+ntva+Lycvhq+idvkd GAG_HV1A2 1 MGARASVLSGGELDKWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTVATLYCVHQRIDVKD 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqktqq..aaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmL 190 tkeAL+kiee eqnksk+k+qq aaa++gnssqvsqnypiVqn+qgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmL GAG_HV1A2 97 TKEALEKIEE--EQNKSKKKAQQaaAAAGTGNSSQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTML 190 **********..***********76677889***************************************************************** PP alig_pr9_edit 191 ntVgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtnnppipVgdiykrwiilgLnkiVrmyspvsILd 286 ntVgghqaAmqmLketIneeAAewdr+hpvhagpiapgqmreprgsdIAgttstlqeqi+wmtnnppipVg+iykrwiilgLnkiVrmysp+sILd GAG_HV1A2 191 NTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILD 286 ************************************************************************************************ PP alig_pr9_edit 287 IkqgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntataimmq 382 I+qgpkepfrdyVdrfyktLrAeqA+q+VknwmtetlLVqnanpdcktiLkALgp+AtleemmtAcqgVggp+hkArvLAeAmsqv+n+a immq GAG_HV1A2 287 IRQGPKEPFRDYVDRFYKTLRAEQASQDVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNPAN-IMMQ 381 ******************************************************************************************7.**** PP alig_pr9_edit 383 kgnfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanfLgkiwpsskgrpgnflqsrpeptAppees 465 +gnf++qr+++kcfncgkegh+A+ncrAprkkgcw+cg+eghqmkdcterqanfLgkiwps+kgrpgnflqsrpeptAppees GAG_HV1A2 382 RGNFRNQRKTVKCFNCGKEGHIAKNCRAPRKKGCWRCGREGHQMKDCTERQANFLGKIWPSYKGRPGNFLQSRPEPTAPPEES 464 **********************************************************************************9 PP >> GAG_HV1EL (P04592) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 1283.9 6.2 0 0 1 465 [] 1 463 [. 1 463 [. 1.00 Alignments for each domain: == domain 1 score: 1283.9 bits; conditional E-value: 0 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgArAsvLsggkLd+wekirLrpggkkkyrlkh+VwAsreLer+AlnpgLletsegc+qi+gqlqpa+qtg+eeLrsL+ntva+Lycvh +idvkd GAG_HV1EL 1 MGARASVLSGGKLDKWEKIRLRPGGKKKYRLKHIVWASRELERYALNPGLLETSEGCKQIIGQLQPAIQTGTEELRSLYNTVATLYCVHKGIDVKD 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqktqqaaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLnt 192 tkeAL+k+ee eqnksk+k+qqaaad+gn+sqvsqnypiVqn+qgqmVhqaisprtLnAwVkV+eekafspeVIpmfsALsegAtpqdlntmLnt GAG_HV1EL 97 TKEALEKMEE--EQNKSKKKAQQAAADTGNNSQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNT 190 **********..************************************************************************************ PP alig_pr9_edit 193 VgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtnnppipVgdiykrwiilgLnkiVrmyspvsILdIk 288 VgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmt+nppipVg+iykrwii+gLnkiVrmyspvsILdI+ GAG_HV1EL 191 VGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTSNPPIPVGEIYKRWIIVGLNKIVRMYSPVSILDIR 286 ************************************************************************************************ PP alig_pr9_edit 289 qgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntataimmqkg 384 qgpkepfrdyVdrfyktLrAeqA+q+VknwmtetlLVqnanpdcktiLkALgp+AtleemmtAcqgVggpshkArvLAeAmsq++n++t+ mmq+g GAG_HV1EL 287 QGPKEPFRDYVDRFYKTLRAEQASQDVKNWMTETLLVQNANPDCKTILKALGPQATLEEMMTACQGVGGPSHKARVLAEAMSQATNSVTTAMMQRG 382 ************************************************************************************************ PP alig_pr9_edit 385 nfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanfLgkiwpsskgrpgnflqsrpeptAppees 465 nfkg+r+iikcfncgkegh+A+ncrAprkkgcw+cgkeghq kdcterqanfLg+iwps+kgrpgnflqsrpeptApp+es GAG_HV1EL 383 NFKGPRKIIKCFNCGKEGHIAKNCRAPRKKGCWRCGKEGHQLKDCTERQANFLGRIWPSHKGRPGNFLQSRPEPTAPPAES 463 ********************************************************************************9 PP >> GAG_HV190 (O93182) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 1280.1 6.7 0 0 1 465 [] 1 463 [. 1 463 [. 1.00 Alignments for each domain: == domain 1 score: 1280.1 bits; conditional E-value: 0 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLlet egc+qi+ q+qpa++tg+eeL+sLfn+vavLycvh+kidvkd GAG_HV190 1 MGARASVLSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFALNPGLLETPEGCLQIIEQIQPAIKTGTEELKSLFNLVAVLYCVHRKIDVKD 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqktqqaaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLnt 192 tkeALdkiee +qnks+qktqqaaad+ ++++vsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdln mLnt GAG_HV190 97 TKEALDKIEE--IQNKSQQKTQQAAADKEKDNKVSQNYPIVQNAQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNAMLNT 190 **********..************************************************************************************ PP alig_pr9_edit 193 VgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtnnppipVgdiykrwiilgLnkiVrmyspvsILdIk 288 VgghqaAmqmLk+tIneeAAewdr+hpvhagpi+pgqmreprgsdIAgttstlqeqiawmt+np ipVgdiykrwiilgLnkiVrmyspvsILdIk GAG_HV190 191 VGGHQAAMQMLKDTINEEAAEWDRVHPVHAGPIPPGQMREPRGSDIAGTTSTLQEQIAWMTGNPAIPVGDIYKRWIILGLNKIVRMYSPVSILDIK 286 ************************************************************************************************ PP alig_pr9_edit 289 qgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntataimmqkg 384 qgpkepfrdyVdrf+ktLrAeqAtq+VknwmtetlLVqnanpdcktiL+ALg+gA++eemmtAcqgVggpshkArvLAeAmsqv+nt+taimmqkg GAG_HV190 287 QGPKEPFRDYVDRFFKTLRAEQATQDVKNWMTETLLVQNANPDCKTILRALGQGASIEEMMTACQGVGGPSHKARVLAEAMSQVTNTNTAIMMQKG 382 ************************************************************************************************ PP alig_pr9_edit 385 nfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanfLgkiwpsskgrpgnflqsrpeptAppees 465 nfkgqr+++kcfncgkegh+ArncrAprkkgcwkcg+eghqmkdcterqanfLgkiwpsskgrpgnflqsrpeptApp+es GAG_HV190 383 NFKGQRKFVKCFNCGKEGHIARNCRAPRKKGCWKCGREGHQMKDCTERQANFLGKIWPSSKGRPGNFLQSRPEPTAPPAES 463 ********************************************************************************9 PP >> GAG_HV1RH (P05890) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 1271.6 5.8 0 0 1 465 [] 1 464 [. 1 464 [. 1.00 Alignments for each domain: == domain 1 score: 1271.6 bits; conditional E-value: 0 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgArAsvLsggkLd+wekirLrp gkk+y+lkh+VwAsreLerfA+np+Llet+egcrqilgqlqpalqtgseeL+sL+n+va+Lycvhq+i+v+d GAG_HV1RH 1 MGARASVLSGGKLDKWEKIRLRPRGKKRYKLKHIVWASRELERFAVNPSLLETAEGCRQILGQLQPALQTGSEELKSLYNAVATLYCVHQNIEVRD 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqktqqaaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLnt 192 tkeALdkiee eqnksk+k+qqaaad+gn sqvsqnypiVqn+qgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLnt GAG_HV1RH 97 TKEALDKIEE--EQNKSKKKAQQAAADTGNGSQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNT 190 **********..************************************************************************************ PP alig_pr9_edit 193 VgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtnnppipVgdiykrwiilgLnkiVrmyspvsILdIk 288 VgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqi+wmtnnppipVg+iykrwiilgLnkiVrmysp sILdI+ GAG_HV1RH 191 VGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPISILDIR 286 ************************************************************************************************ PP alig_pr9_edit 289 qgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntataimmqkg 384 qgpkepfrdyVdrfyktLrAeqA+q+Vknwmtet LVqnanpdcktiLkALgp+AtleemmtAcqgVggpshkAr LAeAmsqv+n+at im qkg GAG_HV1RH 287 QGPKEPFRDYVDRFYKTLRAEQASQDVKNWMTETFLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPSHKARILAEAMSQVTNSAT-IMLQKG 381 ****************************************************************************************9.****** PP alig_pr9_edit 385 nfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcte..rqanfLgkiwpsskgrpgnflqsrpeptAppees 465 nf+ qr+i+kcfncgk gh+A+ncrAprkkgcwkcgkeghqmkdct+ rqanfLgkiwps+kgrpgnflqsrpeptAppees GAG_HV1RH 382 NFRDQRKIVKCFNCGKVGHIAKNCRAPRKKGCWKCGKEGHQMKDCTNegRQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEES 464 **********************************************99**********************************9 PP >> GAG_HV1MA (P04594) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 1262.5 7.1 0 0 1 465 [] 1 468 [. 1 468 [. 0.98 Alignments for each domain: == domain 1 score: 1262.5 bits; conditional E-value: 0 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLlet egc qi+ qlq l+tgsee +sL+ntva+Lycvhq+idvkd GAG_HV1MA 1 MGARASVLSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFALNPGLLETGEGCQQIMEQLQSTLKTGSEEIKSLYNTVATLYCVHQRIDVKD 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqk......tqqaaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdl 186 tkeALdkiee +qnks+qk +qqaaa++ nss+vsqnypiVqnaqgqm hqaisprtLnAwVkV+eekafspeVIpmfsALsegAtpqdl GAG_HV1MA 97 TKEALDKIEE--IQNKSRQKtqqaaaAQQAAAATKNSSSVSQNYPIVQNAQGQMIHQAISPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDL 190 **********..********444444444778899************************************************************* PP alig_pr9_edit 187 ntmLntVgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtnnppipVgdiykrwiilgLnkiVrmyspv 282 n+mLn+VgghqaAmqmLk+tIneeAA+wdr+hpvhagpi+pgqmreprgsdIAgttstlqeqi+wmt+nppipVgdiykrwiilgLnkiVrmyspv GAG_HV1MA 191 NMMLNIVGGHQAAMQMLKDTINEEAADWDRVHPVHAGPIPPGQMREPRGSDIAGTTSTLQEQIGWMTSNPPIPVGDIYKRWIILGLNKIVRMYSPV 286 ************************************************************************************************ PP alig_pr9_edit 283 sILdIkqgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntata 378 sILdI+qgpkepfrdyVdrf+ktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsq++n++ a GAG_HV1MA 287 SILDIRQGPKEPFRDYVDRFFKTLRAEQATQEVKNWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQGVGGPSHKARVLAEAMSQATNSTAA 382 ************************************************************************************************ PP alig_pr9_edit 379 immqkgnfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanfLgkiwpsskgrpgnflqsrpeptAppees 465 immq+gnfkgq+r ikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanfLgkiwps+kgrpgnflqsrpeptApp+es GAG_HV1MA 383 IMMQRGNFKGQKR-IKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPAES 468 *************.9***********************************************************************9 PP >> W8EEZ4_9PLVG (W8EEZ4) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 1257.0 5.4 0 0 1 465 [] 1 461 [. 1 461 [. 1.00 Alignments for each domain: == domain 1 score: 1257.0 bits; conditional E-value: 0 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgArAs+Lsgg+Ld+wekirLrpggkkkyrlkh+VwAsreLerfA+npgLlet+egcrqi++qlqp+lqtgseeL+sLfntva+Lycvhqkid+kd W8EEZ4_9PLVG 1 MGARASILSGGELDRWEKIRLRPGGKKKYRLKHIVWASRELERFAVNPGLLETTEGCRQIIKQLQPSLQTGSEELKSLFNTVATLYCVHQKIDIKD 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqktqqaaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLnt 192 tkeALd+iee eqnksk+k+qq+aad+gn+sqvsqnypiVqnaqgqmVhq+isprtLnAwVkVveek f+peVIpmfsALsegAtpqdln+mLn+ W8EEZ4_9PLVG 97 TKEALDRIEE--EQNKSKKKAQQTAADTGNNSQVSQNYPIVQNAQGQMVHQPISPRTLNAWVKVVEEKGFNPEVIPMFSALSEGATPQDLNMMLNI 190 **********..************************************************************************************ PP alig_pr9_edit 193 VgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtnnppipVgdiykrwiilgLnkiVrmyspvsILdIk 288 VgghqaAmqmLketIneeAA+wdr+hpvhagpi+pgqmreprgsdIAgttstlqeqi+wmtnnppipVgdiykrwiilgLnkiVrmyspvsILdI+ W8EEZ4_9PLVG 191 VGGHQAAMQMLKETINEEAADWDRTHPVHAGPIPPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGDIYKRWIILGLNKIVRMYSPVSILDIR 286 ************************************************************************************************ PP alig_pr9_edit 289 qgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnan.pdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntataimmqk 383 qgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLV + + pdc++iLkALg+gAtleemmtAcqgVggpshkArvLAeAmsq+q+++ immq+ W8EEZ4_9PLVG 287 QGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVPKLQiPDCRSILKALGTGATLEEMMTACQGVGGPSHKARVLAEAMSQAQQPG--IMMQR 380 **************************************9987***********************************************..9**** PP alig_pr9_edit 384 gnfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanfLgkiwpsskgrpgnflqsrpeptAppees 465 gnfkgq+r ikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanfLg++wps+kgrpgnflq+rpeptAppees W8EEZ4_9PLVG 381 GNFKGQKR-IKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGRFWPSHKGRPGNFLQNRPEPTAPPEES 461 ********.9***********************************************************************9 PP >> A8E117_9HIV1 (A8E117) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 1249.9 6.0 0 0 1 465 [] 1 460 [. 1 460 [. 1.00 Alignments for each domain: == domain 1 score: 1249.9 bits; conditional E-value: 0 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgArAsvLsggkLdawekirLrpgg+kkyr+khlVwAsreLerfA+npgLle ++gc++il+qlqpalqtgseeL+sLfn+va+Lycvhq+idvkd A8E117_9HIV1 1 MGARASVLSGGKLDAWEKIRLRPGGRKKYRMKHLVWASRELERFAINPGLLEAADGCLDILRQLQPALQTGSEELKSLFNLVATLYCVHQRIDVKD 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqktqqaaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLnt 192 tkeAL+ +e+ +q++++qktqq + g+ssq+sqnypiV+naqgqmVhqa+sprtLnAwVkV+eekafspeVIpmfsALsegAtpqdlntmLnt A8E117_9HIV1 97 TKEALEEVEK--VQKNRQQKTQQ---EEGSSSQASQNYPIVHNAQGQMVHQALSPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNT 187 **********..***********...********************************************************************** PP alig_pr9_edit 193 VgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtnnppipVgdiykrwiilgLnkiVrmyspvsILdIk 288 VgghqaAmqmLk+tIneeAAewdrlhp++agpiapgqmreprgsdIAgttstlqeqiawmtnnppipVg+iykrwiilgLnkiVrmyspvsILdI+ A8E117_9HIV1 188 VGGHQAAMQMLKDTINEEAAEWDRLHPQQAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPVSILDIR 283 ************************************************************************************************ PP alig_pr9_edit 289 qgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntataimmqkg 384 qgpkepfrdyVdrf+ktLrAeqAtqeVknwmt+tlLVqnanpdcktiL+ALgpgAtleemmtAcqgVggpshkArvLAeAmsq++ ++taimmqkg A8E117_9HIV1 284 QGPKEPFRDYVDRFFKTLRAEQATQEVKNWMTSTLLVQNANPDCKTILRALGPGATLEEMMTACQGVGGPSHKARVLAEAMSQASGAVTAIMMQKG 379 ************************************************************************************************ PP alig_pr9_edit 385 nfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanfLgkiwpsskgrpgnflqsrpeptAppees 465 nfkgq+riikcfncgkeghlArncrAprkkgcwkcg+eghqmkdcterqanfLgkiw+++kgrpgnflq+rpeptApp+es A8E117_9HIV1 380 NFKGQKRIIKCFNCGKEGHLARNCRAPRKKGCWKCGREGHQMKDCTERQANFLGKIWSPNKGRPGNFLQNRPEPTAPPAES 460 ********************************************************************************9 PP >> GAG_HV193 (O89291) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 1243.5 5.4 0 0 1 465 [] 1 457 [. 1 457 [. 1.00 Alignments for each domain: == domain 1 score: 1243.5 bits; conditional E-value: 0 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAl+pgLletsegcr+i+gqlqp+lqtgseeL+sL+nt+avLy+vhqk++vkd GAG_HV193 1 MGARASVLSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFALDPGLLETSEGCRKIIGQLQPSLQTGSEELKSLYNTIAVLYYVHQKVEVKD 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqktqqaaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLnt 192 tkeAL+k+ee eqnk++qktqqa+a++g vsqnypiVqn+qgqmVhq++sprtLnAwVkV+eekafspeVIpmfsALsegAtpqdlntmLnt GAG_HV193 97 TKEALEKLEE--EQNKGRQKTQQATAEKG----VSQNYPIVQNLQGQMVHQSLSPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNT 186 **********..**************999....9************************************************************** PP alig_pr9_edit 193 VgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtnnppipVgdiykrwiilgLnkiVrmyspvsILdIk 288 VgghqaAmqmLk+tIneeAAewdrlhp++agpi+pgq+reprgsdIAgttstlqeqi+wmt+npp+pVg++ykrwiilgLnkiVrmyspv ILdI+ GAG_HV193 187 VGGHQAAMQMLKDTINEEAAEWDRLHPTQAGPIPPGQIREPRGSDIAGTTSTLQEQIQWMTGNPPVPVGEMYKRWIILGLNKIVRMYSPVGILDIR 282 ************************************************************************************************ PP alig_pr9_edit 289 qgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntataimmqkg 384 qgpkepfrdyVdrf+ktLrAeqAtqeVk wmt+tlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsq++nta immqk+ GAG_HV193 283 QGPKEPFRDYVDRFFKTLRAEQATQEVKGWMTDTLLVQNANPDCKTILKALGPGATLEEMMTACQGVGGPSHKARVLAEAMSQATNTA--IMMQKS 376 **************************************************************************************99..9***** PP alig_pr9_edit 385 nfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanfLgkiwpsskgrpgnflqsrpeptAppees 465 nfkgqrri+kcfncgkegh+A+ncrAprkkgcwkcg+eghqmkdcterqanfLgkiwps+kgrpgnf+q+rpep+App+es GAG_HV193 377 NFKGQRRIVKCFNCGKEGHIAKNCRAPRKKGCWKCGREGHQMKDCTERQANFLGKIWPSNKGRPGNFIQNRPEPSAPPAES 457 ********************************************************************************9 PP >> GAG_HV1ET (Q75001) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 1243.0 6.1 0 0 1 463 [. 1 457 [. 1 459 [. 0.99 2 ? -0.4 3.2 0.56 0.56 455 465 .] 460 470 .. 458 470 .. 0.92 Alignments for each domain: == domain 1 score: 1243.0 bits; conditional E-value: 0 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgArAs+L+g kLdaweki+Lrpggkk+y+lkhlVwA+reLe+fAlnp+Ll+ts gc+qi++qlqpalqtg+eeL+sLfntva+Lycvhqki++kd GAG_HV1ET 1 MGARASILRGEKLDAWEKIKLRPGGKKHYMLKHLVWANRELEKFALNPDLLDTSAGCKQIIKQLQPALQTGTEELKSLFNTVATLYCVHQKIEIKD 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqktqq.aaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLn 191 tkeALdkiee eqn s+qktqq aad+g++ sqnypiVqn+qgqmVhq+is+rtLnAwVkVveekafspeVIpmf+ALsegAtpqdlntmLn GAG_HV1ET 97 TKEALDKIEE--EQNESQQKTQQaGAADRGKD---SQNYPIVQNMQGQMVHQPISARTLNAWVKVVEEKAFSPEVIPMFTALSEGATPQDLNTMLN 187 **********..***********445566655...9************************************************************ PP alig_pr9_edit 192 tVgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtnnppipVgdiykrwiilgLnkiVrmyspvsILdI 287 tVgghqaAmqmLk+tIneeAAewdrlhpvhagp+apgqmr+prgsdIAgttstlqeqiawmt+npp+pVgdiykrwiilgLnkiVrmyspvsILdI GAG_HV1ET 188 TVGGHQAAMQMLKDTINEEAAEWDRLHPVHAGPVAPGQMRDPRGSDIAGTTSTLQEQIAWMTGNPPVPVGDIYKRWIILGLNKIVRMYSPVSILDI 283 ************************************************************************************************ PP alig_pr9_edit 288 kqgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntataimmqk 383 kqgpkepfrdyVdrf+ktLrAeqAtq+Vknwmt+tlLVqnanpdcktiL+ALgpgA+leemmtAcqgVggp+hkArvLAeAmsqv+nt+ immqk GAG_HV1ET 284 KQGPKEPFRDYVDRFFKTLRAEQATQDVKNWMTDTLLVQNANPDCKTILRALGPGASLEEMMTACQGVGGPAHKARVLAEAMSQVNNTT--IMMQK 377 ***************************************************************************************99..9**** PP alig_pr9_edit 384 gnfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanfLgkiwpsskgrpgnflqsrpeptAppe 463 +nfkg++r ikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanfLg++wps+kgrpgnflqsrpeptAppe GAG_HV1ET 378 SNFKGPKRAIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGRLWPSNKGRPGNFLQSRPEPTAPPE 457 *******************************************************************************8 PP == domain 2 score: -0.4 bits; conditional E-value: 0.56 alig_pr9_edit 455 rpeptAppees 465 rpeptApp es GAG_HV1ET 460 RPEPTAPPPES 470 9*******998 PP >> GAG_HV192 (O12157) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 1241.3 7.3 0 0 1 465 [] 1 459 [. 1 459 [. 0.99 Alignments for each domain: == domain 1 score: 1241.3 bits; conditional E-value: 0 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgArAs+L+ggkLdawe+i+L+pggkk+y++khlVwAsreLerfAl+pgLletsegc+qi++qlqpalqtg++eL+sL+ntva+Lycvh kidv+d GAG_HV192 1 MGARASILRGGKLDAWERIKLKPGGKKHYMMKHLVWASRELERFALDPGLLETSEGCKQIMKQLQPALQTGTKELISLHNTVATLYCVHEKIDVRD 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqktqqaaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLnt 192 tkeALdki+e eqnks+qktqq a+a+++ +vsqnypiVqn+qgqmVhq+is+rtLnAwVkVveekafspeVIpmf+ALsegAtpqdlntmLnt GAG_HV192 97 TKEALDKIKE--EQNKSQQKTQQ--AEAADKGKVSQNYPIVQNLQGQMVHQPISARTLNAWVKVVEEKAFSPEVIPMFTALSEGATPQDLNTMLNT 188 **********..***********..77778889*************************************************************** PP alig_pr9_edit 193 VgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtnnppipVgdiykrwiilgLnkiVrmyspvsILdIk 288 VgghqaAmqmLk+tIneeAAewdrlhpvhagp+apgqmreprgsdIAgttstlqeqi+wmtnnpp+pVgdiykrwiilgLnkiVrmyspvsILdIk GAG_HV192 189 VGGHQAAMQMLKDTINEEAAEWDRLHPVHAGPVAPGQMREPRGSDIAGTTSTLQEQITWMTNNPPVPVGDIYKRWIILGLNKIVRMYSPVSILDIK 284 ************************************************************************************************ PP alig_pr9_edit 289 qgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntataimmqkg 384 qgpkepfrdyVdrf+ktLrAeqAtq+Vknwmt+tlLVqnanpdcktiL+ALgpgA+leemmtAcqgVggp+hkArvLAeAms+v+nt+ immq++ GAG_HV192 285 QGPKEPFRDYVDRFFKTLRAEQATQDVKNWMTDTLLVQNANPDCKTILRALGPGASLEEMMTACQGVGGPGHKARVLAEAMSKVNNTN--IMMQRS 378 ****************************************************************************************..9***** PP alig_pr9_edit 385 nfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanfLgkiwpsskgrpgnflqsrpeptAppees 465 n+kg++r+ikcfncgkeghlArncrAprkkgcwkcgkeghq+kdcterqanfLgkiwps++grpgn lq+r+eptAppees GAG_HV192 379 NCKGPKRTIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQVKDCTERQANFLGKIWPSHRGRPGNLLQNRTEPTAPPEES 459 ********************************************************************************9 PP >> Q9YX54_9HIV1 (Q9YX54) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 1240.4 6.6 0 0 1 464 [. 1 462 [. 1 463 [. 1.00 Alignments for each domain: == domain 1 score: 1240.4 bits; conditional E-value: 0 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgArAsvLsggkLdawe+irLrpggkkkyrlkhlVwAsreLerfAlnpgLlet+egc q++ qlq l+tgseeLrsL+nt+ +L+cvhq+idv+d Q9YX54_9HIV1 1 MGARASVLSGGKLDAWERIRLRPGGKKKYRLKHLVWASRELERFALNPGLLETAEGCQQLMEQLQSTLKTGSEELRSLYNTITTLWCVHQRIDVQD 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqktqqaaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLnt 192 tkeALdkiee +q kskqktqqaaa+ag+ss+vsqnypiVqnaqgqmVhq+isprtLnAwVkV+eekafspeVIpmfsALsegAtpqdln+mLn+ Q9YX54_9HIV1 97 TKEALDKIEE--IQSKSKQKTQQAAAAAGGSSNVSQNYPIVQNAQGQMVHQSISPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNMMLNI 190 **********..************************************************************************************ PP alig_pr9_edit 193 VgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtnnppipVgdiykrwiilgLnkiVrmyspvsILdIk 288 VgghqaAmqmLk+tIneeAA+wdr+hpvhagpi+pgqmreprgsdIAgttstlqeqi+wmt+npp+pVg+iykrwiilgLnkiVr ysp sILdI+ Q9YX54_9HIV1 191 VGGHQAAMQMLKDTINEEAADWDRTHPVHAGPIPPGQMREPRGSDIAGTTSTLQEQIGWMTSNPPVPVGEIYKRWIILGLNKIVRTYSPISILDIR 286 ************************************************************************************************ PP alig_pr9_edit 289 qgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntataimmqkg 384 qgpkepfrdyVdrf+k LrAeqAtqeVknwmtetlLVqnanpdck+iLkALg+gAtleemmtAcqgVggpshkArvLAeAmsq++n+a aimmqk+ Q9YX54_9HIV1 287 QGPKEPFRDYVDRFFKCLRAEQATQEVKNWMTETLLVQNANPDCKSILKALGTGATLEEMMTACQGVGGPSHKARVLAEAMSQASNAAAAIMMQKS 382 ************************************************************************************************ PP alig_pr9_edit 385 nfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanfLgkiwpsskgrpgnflqsrpeptAppee 464 fkgqrr+ikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanfLg+ wpsskgrpgnflq+rpeptApp+e Q9YX54_9HIV1 383 KFKGQRRTIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGRMWPSSKGRPGNFLQNRPEPTAPPAE 462 *******************************************************************************9 PP >> Q9Q6W4_9HIV1 (Q9Q6W4) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 1228.0 4.0 0 0 1 464 [. 1 459 [. 1 460 [. 1.00 Alignments for each domain: == domain 1 score: 1228.0 bits; conditional E-value: 0 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgArAsvLsggkLdawekirLrpggk kyr khlVwAsreLerfAlnp+Lletsegc qil qlqp l+tgseeL+sL+ntva+Lycvhq+i++kd Q9Q6W4_9HIV1 1 MGARASVLSGGKLDAWEKIRLRPGGKEKYRIKHLVWASRELERFALNPSLLETSEGCQQILEQLQPTLKTGSEELKSLYNTVATLYCVHQRIEIKD 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqktqqaaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLnt 192 tkeALdkiee +qnkskqktqqaa ++g+ss+vsqnypiVqnaqgqm hq+ sprtLnAwVkV+eekafspeVIpmfsALsegAtpqdln+mLn+ Q9Q6W4_9HIV1 97 TKEALDKIEE--IQNKSKQKTQQAATGTGSSSKVSQNYPIVQNAQGQMTHQSMSPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNMMLNI 190 **********..************************************************************************************ PP alig_pr9_edit 193 VgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtnnppipVgdiykrwiilgLnkiVrmyspvsILdIk 288 VgghqaAmqmLk+tIneeAAewdrlhp +agp +pgqmreprgsdIAg stlqeqi+wmt+nppipVgdiykrwiilgLnkiVrmyspvsILdI+ Q9Q6W4_9HIV1 191 VGGHQAAMQMLKDTINEEAAEWDRLHPAQAGPFPPGQMREPRGSDIAGSSSTLQEQIGWMTSNPPIPVGDIYKRWIILGLNKIVRMYSPVSILDIR 286 ************************************************************************************************ PP alig_pr9_edit 289 qgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntataimmqkg 384 qgpkepfrdyVdrf+ktLrAeqAtq+VknwmtetlLVqnanpdcktiL+ALg gAtleemmt cqgVggp+hkArvLAeAmsqvqn++ immqk+ Q9Q6W4_9HIV1 287 QGPKEPFRDYVDRFFKTLRAEQATQDVKNWMTETLLVQNANPDCKTILRALGSGATLEEMMTVCQGVGGPGHKARVLAEAMSQVQNAN--IMMQKS 380 ****************************************************************************************..9***** PP alig_pr9_edit 385 nfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanfLgkiwpsskgrpgnflqsrpeptAppee 464 nf+g++r ikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanfLg+iwpsskgrpgnf+qsrpep+App+e Q9Q6W4_9HIV1 381 NFRGPKR-IKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGRIWPSSKGRPGNFPQSRPEPSAPPAE 459 *******.9**********************************************************************9 PP >> GAG_SIVEK (Q1A250) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 1219.4 7.4 0 0 1 465 [] 1 469 [. 1 469 [. 0.99 Alignments for each domain: == domain 1 score: 1219.4 bits; conditional E-value: 0 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgArAsvL+ggkLd+weki+Lrpggkkky++khlVwAsreLerfA+npgL++t+egc+q+l+ql+pal+tgse+LrsLfnt+avLycvh++i+v++ GAG_SIVEK 1 MGARASVLTGGKLDQWEKIYLRPGGKKKYMMKHLVWASRELERFACNPGLMDTAEGCAQLLRQLEPALKTGSEGLRSLFNTLAVLYCVHNNIKVQN 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqktqq.aaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLn 191 t+eAL+k++ek+++++++++++q a+a+a+++s++s+nyp+VqnaqgqmVhq++sprtLnAwVkVveekaf+peVIpmf+ALsegAtpqdlntmLn GAG_SIVEK 97 TQEALEKLREKMKAEQKEPEPEQaAGAAAAPESSISRNYPLVQNAQGQMVHQPLSPRTLNAWVKVVEEKAFNPEVIPMFMALSEGATPQDLNTMLN 192 *********************99889********************************************************************** PP alig_pr9_edit 192 tVgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtnnppipVgdiykrwiilgLnkiVrmyspvsILdI 287 tVgghqaAmqmLke+IneeAAewdr hpvh+gpi+pgq+reprgsdIAgttstl+eq+awmt+npp+pVgdiy+rwi+lgLnkiVrmysp+sILdI GAG_SIVEK 193 TVGGHQAAMQMLKEVINEEAAEWDRGHPVHMGPIPPGQVREPRGSDIAGTTSTLAEQVAWMTANPPVPVGDIYRRWIVLGLNKIVRMYSPASILDI 288 ************************************************************************************************ PP alig_pr9_edit 288 kqgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntataimmqk 383 kqgpke+frdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdck+iL+ALgpgA+leemmtAcqgVggp+hkArvLAeAm+q+q++++ ++mq+ GAG_SIVEK 289 KQGPKETFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKNILRALGPGASLEEMMTACQGVGGPAHKARVLAEAMTQAQTATS-VFMQR 383 **************************************************************************************9985.***** PP alig_pr9_edit 384 gnfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcte..rqanfLgkiwpsskgrpgnflq..srpeptAppees 465 gnfkg+r++ikcfncgkeghlArnc+Aprkkgcwkcg+eghqmkdc++ rqanfLgk+wp skgrpgnf+q +r+eptApp+es GAG_SIVEK 384 GNFKGIRKTIKCFNCGKEGHLARNCKAPRKKGCWKCGQEGHQMKDCRSgeRQANFLGKVWPLSKGRPGNFPQttTRKEPTAPPIES 469 **********************************************9777**********************999**********9 PP >> POL_HV1BR (P03367) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 1215.1 5.0 0 0 1 438 [. 1 435 [. 1 459 [. 0.99 Alignments for each domain: == domain 1 score: 1215.1 bits; conditional E-value: 0 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgArAsvLsgg+Ld+wekirLrpggkkky+lkh+VwAsreLerfA+npgLletsegcrqilgqlqp+lqtgseeLrsL+ntva+Lycvhq+i++kd POL_HV1BR 1 MGARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKD 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqktqqaaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLnt 192 tkeALdkiee eqnksk+k+qqaaad+g+ssqvsqnypiVqn+qgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLnt POL_HV1BR 97 TKEALDKIEE--EQNKSKKKAQQAAADTGHSSQVSQNYPIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNT 190 **********..************************************************************************************ PP alig_pr9_edit 193 VgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtnnppipVgdiykrwiilgLnkiVrmyspvsILdIk 288 VgghqaAmqmLketIneeAAewdr+hpvhagpiapgqmreprgsdIAgttstlqeqi+wmtnnppipVg+iykrwiilgLnkiVrmysp+sILdI+ POL_HV1BR 191 VGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIR 286 ************************************************************************************************ PP alig_pr9_edit 289 qgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntataimmqkg 384 qgpkepfrdyVdrfyktLrAeqA+qeVknwmtetlLVqnanpdcktiLkALgp+AtleemmtAcqgVggp+hkArvLAeAmsqv+n+at immq+g POL_HV1BR 287 QGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSAT-IMMQRG 381 ****************************************************************************************9.****** PP alig_pr9_edit 385 nfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanfLg 438 nf++qr+i+kcfncgkegh+ArncrAprkkgcwkcgkeghqmkdcterqanfL POL_HV1BR 382 NFRNQRKIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLR 435 ****************************************************95 PP >> GAG_SIVMB (Q1A268) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 1214.4 4.6 0 0 1 465 [] 1 458 [. 1 458 [. 1.00 Alignments for each domain: == domain 1 score: 1214.4 bits; conditional E-value: 0 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgArAsvL+ggkLd+weki+Lrpggkkky++khlVwAsreLerfA+np+L+et+egc+q+l+ql+pal+tgse+LrsLfnt++vL+cvhq+i+vkd GAG_SIVMB 1 MGARASVLTGGKLDRWEKIYLRPGGKKKYMMKHLVWASRELERFACNPSLMETTEGCKQLLQQLEPALKTGSEGLRSLFNTIVVLWCVHQGIPVKD 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqktqqaaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLnt 192 tkeALd+++e +q+k+kq++ aaa+a+++s+vs+n+piV+naqgqmVhq+isprtLnAwVkVveekafspeVIpmf+ALsegAtpqdlntmLnt GAG_SIVMB 97 TKEALDQLQE--AQQKGKQEV--AAATADGTSTVSRNFPIVANAQGQMVHQPISPRTLNAWVKVVEEKAFSPEVIPMFMALSEGATPQDLNTMLNT 188 **********..********9..9************************************************************************ PP alig_pr9_edit 193 VgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtnnppipVgdiykrwiilgLnkiVrmyspvsILdIk 288 VgghqaAmqmLke+IneeAAewdrlhpvhagp++pgqmreprgsdIAgttst+qeq++wmt+nppipVgdiykrwiilgLnkiV+my+pvsILdIk GAG_SIVMB 189 VGGHQAAMQMLKEVINEEAAEWDRLHPVHAGPVPPGQMREPRGSDIAGTTSTIQEQVGWMTSNPPIPVGDIYKRWIILGLNKIVKMYCPVSILDIK 284 ************************************************************************************************ PP alig_pr9_edit 289 qgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntataimmqkg 384 qgpke+frdyVdrfyktLrAeqAtqeVknwmt+tlLVqnanpdck+iL+ALgpgAtle++++A+qgVggpshkArvLAeAmsq+q++++ +k+ GAG_SIVMB 285 QGPKESFRDYVDRFYKTLRAEQATQEVKNWMTDTLLVQNANPDCKSILRALGPGATLEGDEPAFQGVGGPSHKARVLAEAMSQAQHSND----AKR 376 ****************************************************************************************8....9** PP alig_pr9_edit 385 nfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcte.rqanfLgkiwpsskgrpgnflqsrpeptAppees 465 +fkg++ri+kcfncgkegh+Arnc+Apr+kgcwkcg+eghqm++ct+ rqanfLgk+wpsskgrpgnflq+rpeptApp+es GAG_SIVMB 377 QFKGPKRIVKCFNCGKEGHIARNCKAPRRKGCWKCGQEGHQMRNCTNeRQANFLGKLWPSSKGRPGNFLQKRPEPTAPPIES 458 **********************************************99*********************************9 PP >> POL_HV1B1 (P03366) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 1210.7 5.6 0 0 1 438 [. 1 435 [. 1 459 [. 0.99 Alignments for each domain: == domain 1 score: 1210.7 bits; conditional E-value: 0 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgArAsvLsgg+Ld+wekirLrpggkkky+lkh+VwAsreLerfA+npgLletsegcrqilgqlqp+lqtgseeLrsL+ntva+Lycvhq+i++kd POL_HV1B1 1 MGARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKD 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqktqqaaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLnt 192 tkeALdkiee eqnksk+k+qqaaad+g+ssqvsqnypiVqn+qgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLnt POL_HV1B1 97 TKEALDKIEE--EQNKSKKKAQQAAADTGHSSQVSQNYPIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNT 190 **********..************************************************************************************ PP alig_pr9_edit 193 VgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtnnppipVgdiykrwiilgLnkiVrmyspvsILdIk 288 VgghqaAmqmLketIneeAAewdr+hpvhagpiapgqmreprgsdIAgttstlqeqi+wmtnnppipVg+iykrwiilgLnkiVrmysp+sILdI+ POL_HV1B1 191 VGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIR 286 ************************************************************************************************ PP alig_pr9_edit 289 qgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntataimmqkg 384 qgpkepfrdyVdrfyktLrAeqA+qeVknwmtetlLVqnanpdcktiLkALgp+AtleemmtAcqgVggp+hkArvLAeAmsqv+ntat immq+g POL_HV1B1 287 QGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNTAT-IMMQRG 381 ****************************************************************************************9.****** PP alig_pr9_edit 385 nfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanfLg 438 nf++qr+ +kcfncgkegh ArncrAprkkgcwkcgkeghqmkdcterqanfL POL_HV1B1 382 NFRNQRKMVKCFNCGKEGHTARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLR 435 ****************************************************95 PP >> POL_HV1H2 (P04585) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 1210.4 5.7 0 0 1 438 [. 1 435 [. 1 455 [. 0.99 Alignments for each domain: == domain 1 score: 1210.4 bits; conditional E-value: 0 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgArAsvLsgg+Ld+wekirLrpggkkky+lkh+VwAsreLerfA+npgLletsegcrqilgqlqp+lqtgseeLrsL+ntva+Lycvhq+i++kd POL_HV1H2 1 MGARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKD 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqktqqaaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLnt 192 tkeALdkiee eqnksk+k+qqaaad+g+s+qvsqnypiVqn+qgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLnt POL_HV1H2 97 TKEALDKIEE--EQNKSKKKAQQAAADTGHSNQVSQNYPIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNT 190 **********..************************************************************************************ PP alig_pr9_edit 193 VgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtnnppipVgdiykrwiilgLnkiVrmyspvsILdIk 288 VgghqaAmqmLketIneeAAewdr+hpvhagpiapgqmreprgsdIAgttstlqeqi+wmtnnppipVg+iykrwiilgLnkiVrmysp+sILdI+ POL_HV1H2 191 VGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIR 286 ************************************************************************************************ PP alig_pr9_edit 289 qgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntataimmqkg 384 qgpkepfrdyVdrfyktLrAeqA+qeVknwmtetlLVqnanpdcktiLkALgp+AtleemmtAcqgVggp+hkArvLAeAmsqv+n+at immq+g POL_HV1H2 287 QGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSAT-IMMQRG 381 ****************************************************************************************9.****** PP alig_pr9_edit 385 nfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanfLg 438 nf++qr+i+kcfncgkegh ArncrAprkkgcwkcgkeghqmkdcterqanfL POL_HV1H2 382 NFRNQRKIVKCFNCGKEGHTARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLR 435 ****************************************************95 PP >> POL_HV1Y2 (P35963) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 1210.4 6.0 0 0 1 438 [. 1 435 [. 1 457 [. 0.98 Alignments for each domain: == domain 1 score: 1210.4 bits; conditional E-value: 0 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgArAsvLs g+Ld+wekirLrpggkk+yrlkh+VwAsreLerfA++pgLletsegcrqilgqlqp+lqtgseeLrsL+ntva+Lycvhqki+vkd POL_HV1Y2 1 MGARASVLSAGELDKWEKIRLRPGGKKQYRLKHIVWASRELERFAVDPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTVATLYCVHQKIEVKD 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqktqqaaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLnt 192 tkeAL+kiee eqnksk+k+qqaaad+gnssqvsqnypiVqn+qgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLnt POL_HV1Y2 97 TKEALEKIEE--EQNKSKKKAQQAAADTGNSSQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNT 190 **********..************************************************************************************ PP alig_pr9_edit 193 VgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtnnppipVgdiykrwiilgLnkiVrmyspvsILdIk 288 VgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqi+wmtnnppipVg+iykrwiilgLnkiVrmysp+sILdI+ POL_HV1Y2 191 VGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIR 286 ************************************************************************************************ PP alig_pr9_edit 289 qgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntataimmqkg 384 qgpkepfrdyVdrfyktLrAeqA+qeVknwmtetlLVqnanpdcktiLkALgp+AtleemmtAcqgVggp+hkArvLAeAmsqv+n+at immq+g POL_HV1Y2 287 QGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSAT-IMMQRG 381 ****************************************************************************************9.****** PP alig_pr9_edit 385 nfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanfLg 438 nf++qr+++kcfncgkegh+A+ncrAprkkgcwkcgkeghqmkdcterqanfL POL_HV1Y2 382 NFRNQRKTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLR 435 ****************************************************96 PP >> GAG_HV1YF (O91079) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 1206.2 2.5 0 0 1 465 [] 1 469 [. 1 469 [. 1.00 Alignments for each domain: == domain 1 score: 1206.2 bits; conditional E-value: 0 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgArAsvL+ggkLd+we+i+Lrpggkkkyr+khlVwAsreLerfA+npgL++t++gc+++l+ql+pal+tgseeLrsL+n++avLycvh++i++++ GAG_HV1YF 1 MGARASVLTGGKLDQWESIYLRPGGKKKYRMKHLVWASRELERFACNPGLMDTADGCAKLLNQLEPALKTGSEELRSLYNALAVLYCVHSRIQIHN 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqktqqaaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLnt 192 t+eALdki+ek+eq+k+++k+++a+a+a+++s++s+nyp+Vq+aqgqmVhq+++prtLnAwVkV+eekafspeVIpmf+ALsegAtp+dlntmLnt GAG_HV1YF 97 TQEALDKIKEKQEQHKPEPKNPEAGAAAATDSNISRNYPLVQTAQGQMVHQPLTPRTLNAWVKVIEEKAFSPEVIPMFMALSEGATPSDLNTMLNT 192 ************************************************************************************************ PP alig_pr9_edit 193 VgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtnnppipVgdiykrwiilgLnkiVrmyspvsILdIk 288 VgghqaAmqmLke+IneeAA+wdr+hpv++gp +pgq+r+prgsdIAgttstl+eq+awmt+npp+pVgdiy+rwi+lgLn+iVrmyspvsIL+Ik GAG_HV1YF 193 VGGHQAAMQMLKEVINEEAADWDRTHPVPVGPLPPGQLRDPRGSDIAGTTSTLAEQVAWMTANPPVPVGDIYRRWIVLGLNRIVRMYSPVSILEIK 288 ************************************************************************************************ PP alig_pr9_edit 289 qgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntataimmqkg 384 qgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdck+ LkALgpgAtleemmtAcqgVggp+hkArvLAeAmsqvq+++t++++q+g GAG_HV1YF 289 QGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKQLLKALGPGATLEEMMTACQGVGGPAHKARVLAEAMSQVQQPTTSVFAQRG 384 ************************************************************************************************ PP alig_pr9_edit 385 nfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcte..rqanfLgkiwpsskgrpgnflq..srpeptAppees 465 nfkg+r++ikcfncgkeghlArnc+Apr+ gcwkcg+eghqmkdc++ rqanfLgk+w+++kgrpgnf+q +r+eptApp es GAG_HV1YF 385 NFKGIRKPIKCFNCGKEGHLARNCKAPRRGGCWKCGQEGHQMKDCKNegRQANFLGKSWSPFKGRPGNFPQttTRKEPTAPPLES 469 **********************************************99***********************999**********8 PP >> POL_HV1B9 (Q73368) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 1205.8 5.8 0 0 1 437 [. 1 434 [. 1 459 [. 0.98 Alignments for each domain: == domain 1 score: 1205.8 bits; conditional E-value: 0 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgArAsvLsgg+Ld+wekirLrpggkkky+lkh+VwAsreLerfA+np+Lletsegcrqilgqlq +lqtgseeL+sL+ntva+Lycvhq+i+vkd POL_HV1B9 1 MGARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPSLLETSEGCRQILGQLQSSLQTGSEELKSLYNTVATLYCVHQRIEVKD 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqktqqaaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLnt 192 tkeALdkiee eqnksk+k+qqaaad+gnssqvsqnypiVqn+qgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLnt POL_HV1B9 97 TKEALDKIEE--EQNKSKKKAQQAAADTGNSSQVSQNYPIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNT 190 **********..************************************************************************************ PP alig_pr9_edit 193 VgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtnnppipVgdiykrwiilgLnkiVrmyspvsILdIk 288 VgghqaAmqmLketIneeAAewdrlhpv+agp+apgqmreprgsdIAgttstlqeqi+wmtnnppipVg+iykrwiilgLnkiVrmysp sILdIk POL_HV1B9 191 VGGHQAAMQMLKETINEEAAEWDRLHPVQAGPVAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPSSILDIK 286 ************************************************************************************************ PP alig_pr9_edit 289 qgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntataimmqkg 384 qgpkepfrdyVdrfyktLrAeqA+qeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggp+hkArvLAeAmsqv+n+at immq+g POL_HV1B9 287 QGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSAT-IMMQRG 381 ****************************************************************************************9.****** PP alig_pr9_edit 385 nfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanfL 437 nf++qr+++kcfncgkegh+A+ncrAprkkgcwkcgkeghqmkdcterqanf POL_HV1B9 382 NFRNQRKTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFF 434 ****************************************************6 PP >> POL_HV1A2 (P03369) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 1205.4 5.5 0 0 1 438 [. 1 437 [. 1 457 [. 0.99 Alignments for each domain: == domain 1 score: 1205.4 bits; conditional E-value: 0 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgArAsvLsgg+Ld+wekirLrpggkkky+lkh+VwAsreLerfA+npgLletsegcrqilgqlqp+lqtgseeLrsL+ntva+Lycvhq+idvkd POL_HV1A2 1 MGARASVLSGGELDKWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTVATLYCVHQRIDVKD 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqktqq..aaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmL 190 tkeAL+kiee eqnksk+k+qq aaa++gnssqvsqnypiVqn+qgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmL POL_HV1A2 97 TKEALEKIEE--EQNKSKKKAQQaaAAAGTGNSSQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTML 190 **********..***********76677889***************************************************************** PP alig_pr9_edit 191 ntVgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtnnppipVgdiykrwiilgLnkiVrmyspvsILd 286 ntVgghqaAmqmLketIneeAAewdr+hpvhagpiapgqmreprgsdIAgttstlqeqi+wmtnnppipVg+iykrwiilgLnkiVrmysp+sILd POL_HV1A2 191 NTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILD 286 ************************************************************************************************ PP alig_pr9_edit 287 IkqgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntataimmq 382 I+qgpkepfrdyVdrfyktLrAeqA+q+VknwmtetlLVqnanpdcktiLkALgp+AtleemmtAcqgVggp+hkArvLAeAmsqv+n+a immq POL_HV1A2 287 IRQGPKEPFRDYVDRFYKTLRAEQASQDVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNPAN-IMMQ 381 ******************************************************************************************7.**** PP alig_pr9_edit 383 kgnfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanfLg 438 +gnf++qr+++kcfncgkegh+A+ncrAprkkgcw+cg+eghqmkdcterqanfL POL_HV1A2 382 RGNFRNQRKTVKCFNCGKEGHIAKNCRAPRKKGCWRCGREGHQMKDCTERQANFLR 437 ******************************************************95 PP >> POL_HV1EL (P04589) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 1202.1 6.2 0 0 1 437 [. 1 435 [. 1 447 [. 1.00 Alignments for each domain: == domain 1 score: 1202.1 bits; conditional E-value: 0 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgArAsvLsggkLd+wekirLrpggkkkyrlkh+VwAsreLer+AlnpgLletsegc+qi+gqlqpa+qtg+eeLrsL+ntva+Lycvh +idvkd POL_HV1EL 1 MGARASVLSGGKLDKWEKIRLRPGGKKKYRLKHIVWASRELERYALNPGLLETSEGCKQIIGQLQPAIQTGTEELRSLYNTVATLYCVHKGIDVKD 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqktqqaaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLnt 192 tkeAL+k+ee eqnksk+k+qqaaad+gn+sqvsqnypiVqn+qgqmVhqaisprtLnAwVkV+eekafspeVIpmfsALsegAtpqdlntmLnt POL_HV1EL 97 TKEALEKMEE--EQNKSKKKAQQAAADTGNNSQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNT 190 **********..************************************************************************************ PP alig_pr9_edit 193 VgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtnnppipVgdiykrwiilgLnkiVrmyspvsILdIk 288 VgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmt+nppipVg+iykrwii+gLnkiVrmyspvsILdI+ POL_HV1EL 191 VGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTSNPPIPVGEIYKRWIIVGLNKIVRMYSPVSILDIR 286 ************************************************************************************************ PP alig_pr9_edit 289 qgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntataimmqkg 384 qgpkepfrdyVdrfyktLrAeqA+q+VknwmtetlLVqnanpdcktiLkALgp+AtleemmtAcqgVggpshkArvLAeAmsq++n++t+ mmq+g POL_HV1EL 287 QGPKEPFRDYVDRFYKTLRAEQASQDVKNWMTETLLVQNANPDCKTILKALGPQATLEEMMTACQGVGGPSHKARVLAEAMSQATNSVTTAMMQRG 382 ************************************************************************************************ PP alig_pr9_edit 385 nfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanfL 437 nfkg+r+iikcfncgkegh+A+ncrAprkkgcw+cgkeghq kdcterqanfL POL_HV1EL 383 NFKGPRKIIKCFNCGKEGHIAKNCRAPRKKGCWRCGKEGHQLKDCTERQANFL 435 ****************************************************9 PP >> GAG_SIVCZ (P17282) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 1191.7 1.8 0 0 1 465 [] 1 472 [. 1 472 [. 0.99 Alignments for each domain: == domain 1 score: 1191.7 bits; conditional E-value: 0 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgArAsvL+ggkLd+wek+rLrpgg+k+y++khlVwAsreLerfA++pgL+e++egc+++l+ql+pal+tgse+LrsLfnt+avL+c+h++i+v+d GAG_SIVCZ 1 MGARASVLTGGKLDRWEKVRLRPGGRKRYMMKHLVWASRELERFACDPGLMESKEGCTKLLQQLEPALKTGSEGLRSLFNTLAVLWCIHSDITVED 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqk....tqq..aaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdl 186 t++AL++++++h++++sk++ +++ a+++a++s+++s+nyp+VqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegA+pqd+ GAG_SIVCZ 97 TQKALEQLKRHHGEQQSKTEsnsgSREggASQGASASAGISGNYPLVQNAQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGALPQDV 192 ********************7766566789999*************************************************************** PP alig_pr9_edit 187 ntmLntVgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtnnppipVgdiykrwiilgLnkiVrmyspv 282 ntmLn+Vgghq+Amq+Lke+IneeAAewdrlhp+hagpiapgq+reprgsdIAgttstlqeqi+w+t+nppipVgd+y+rw+ilgLnk+Vrmy+pv GAG_SIVCZ 193 NTMLNAVGGHQGAMQVLKEVINEEAAEWDRLHPTHAGPIAPGQLREPRGSDIAGTTSTLQEQIGWTTANPPIPVGDVYRRWVILGLNKVVRMYCPV 288 ************************************************************************************************ PP alig_pr9_edit 283 sILdIkqgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntata 378 sILdI+qgpkepfrdyVdrfyktLrAeqA+qeVknwmt+tlLVqnanpdck+iLkALgpgAtleemmtAcqgVggpshkArvLAeAms+vqn+++a GAG_SIVCZ 289 SILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTDTLLVQNANPDCKQILKALGPGATLEEMMTACQGVGGPSHKARVLAEAMSMVQNQGRA 384 ***********************************************************************************************9 PP alig_pr9_edit 379 .immqkgnfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanfLgkiwpsskgrpgnflqsrpeptAppees 465 +++qkg+++g++r+ikcfncgkeghlArnc+Apr+kgcw+cg+eghqmkdct+rq+nfLgk+wps++grpgnf+q+r+eptApp+es GAG_SIVCZ 385 dVFFQKGQGAGPKRKIKCFNCGKEGHLARNCKAPRRKGCWRCGQEGHQMKDCTGRQVNFLGKGWPSRSGRPGNFVQNRTEPTAPPIES 472 9**************************************************************************************9 PP >> POL_HV190 (O93215) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 1190.5 7.2 0 0 1 436 [. 1 434 [. 1 438 [. 1.00 Alignments for each domain: == domain 1 score: 1190.5 bits; conditional E-value: 0 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLlet egc+qi+ q+qpa++tg+eeL+sLfn+vavLycvh+kidvkd POL_HV190 1 MGARASVLSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFALNPGLLETPEGCLQIIEQIQPAIKTGTEELKSLFNLVAVLYCVHRKIDVKD 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqktqqaaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLnt 192 tkeALdkiee +qnks+qktqqaaad+ ++++vsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdln mLnt POL_HV190 97 TKEALDKIEE--IQNKSQQKTQQAAADKEKDNKVSQNYPIVQNAQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNAMLNT 190 **********..************************************************************************************ PP alig_pr9_edit 193 VgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtnnppipVgdiykrwiilgLnkiVrmyspvsILdIk 288 VgghqaAmqmLk+tIneeAAewdr+hpvhagpi+pgqmreprgsdIAgttstlqeqiawmt+np ipVgdiykrwiilgLnkiVrmyspvsILdIk POL_HV190 191 VGGHQAAMQMLKDTINEEAAEWDRVHPVHAGPIPPGQMREPRGSDIAGTTSTLQEQIAWMTGNPAIPVGDIYKRWIILGLNKIVRMYSPVSILDIK 286 ************************************************************************************************ PP alig_pr9_edit 289 qgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntataimmqkg 384 qgpkepfrdyVdrf+ktLrAeqAtq+VknwmtetlLVqnanpdcktiL+ALg+gA++eemmtAcqgVggpshkArvLAeAmsqv+nt+taimmqkg POL_HV190 287 QGPKEPFRDYVDRFFKTLRAEQATQDVKNWMTETLLVQNANPDCKTILRALGQGASIEEMMTACQGVGGPSHKARVLAEAMSQVTNTNTAIMMQKG 382 ************************************************************************************************ PP alig_pr9_edit 385 nfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanf 436 nfkgqr+++kcfncgkegh+ArncrAprkkgcwkcg+eghqmkdcterqa f POL_HV190 383 NFKGQRKFVKCFNCGKEGHIARNCRAPRKKGCWKCGREGHQMKDCTERQAKF 434 **************************************************99 PP >> POL_HV1RH (P05959) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 1188.3 5.8 0 0 1 438 [. 1 437 [. 1 461 [. 0.98 Alignments for each domain: == domain 1 score: 1188.3 bits; conditional E-value: 0 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgArAsvLsggkLd+wekirLrp gkk+y+lkh+VwAsreLerfA+np+Llet+egcrqilgqlqpalqtgseeL+sL+n+va+Lycvhq+i+v+d POL_HV1RH 1 MGARASVLSGGKLDKWEKIRLRPRGKKRYKLKHIVWASRELERFAVNPSLLETAEGCRQILGQLQPALQTGSEELKSLYNAVATLYCVHQNIEVRD 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqktqqaaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLnt 192 tkeALdkiee eqnksk+k+qqaaad+gn sqvsqnypiVqn+qgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLnt POL_HV1RH 97 TKEALDKIEE--EQNKSKKKAQQAAADTGNGSQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNT 190 **********..************************************************************************************ PP alig_pr9_edit 193 VgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtnnppipVgdiykrwiilgLnkiVrmyspvsILdIk 288 VgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqi+wmtnnppipVg+iykrwiilgLnkiVrmysp sILdI+ POL_HV1RH 191 VGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPISILDIR 286 ************************************************************************************************ PP alig_pr9_edit 289 qgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntataimmqkg 384 qgpkepfrdyVdrfyktLrAeqA+q+Vknwmtet LVqnanpdcktiLkALgp+AtleemmtAcqgVggpshkAr LAeAmsqv+n+at im qkg POL_HV1RH 287 QGPKEPFRDYVDRFYKTLRAEQASQDVKNWMTETFLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPSHKARILAEAMSQVTNSAT-IMLQKG 381 ****************************************************************************************9.****** PP alig_pr9_edit 385 nfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcte..rqanfLg 438 nf+ qr+i+kcfncgk gh+A+ncrAprkkgcwkcgkeghqmkdct+ rqanfL POL_HV1RH 382 NFRDQRKIVKCFNCGKVGHIAKNCRAPRKKGCWKCGKEGHQMKDCTNegRQANFLR 437 **********************************************99******96 PP >> POL_HV1MA (P04588) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 1179.9 6.7 0 0 1 438 [. 1 441 [. 1 465 [. 0.97 Alignments for each domain: == domain 1 score: 1179.9 bits; conditional E-value: 0 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLlet egc qi+ qlq l+tgsee +sL+ntva+Lycvhq+idvkd POL_HV1MA 1 MGARASVLSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFALNPGLLETGEGCQQIMEQLQSTLKTGSEEIKSLYNTVATLYCVHQRIDVKD 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqk......tqqaaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdl 186 tkeALdkiee +qnks+qk +qqaaa++ nss+vsqnypiVqnaqgqm hqaisprtLnAwVkV+eekafspeVIpmfsALsegAtpqdl POL_HV1MA 97 TKEALDKIEE--IQNKSRQKtqqaaaAQQAAAATKNSSSVSQNYPIVQNAQGQMIHQAISPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDL 190 **********..********444444444778899************************************************************* PP alig_pr9_edit 187 ntmLntVgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtnnppipVgdiykrwiilgLnkiVrmyspv 282 n+mLn+VgghqaAmqmLk+tIneeAA+wdr+hpvhagpi+pgqmreprgsdIAgttstlqeqi+wmt+nppipVgdiykrwiilgLnkiVrmyspv POL_HV1MA 191 NMMLNIVGGHQAAMQMLKDTINEEAADWDRVHPVHAGPIPPGQMREPRGSDIAGTTSTLQEQIGWMTSNPPIPVGDIYKRWIILGLNKIVRMYSPV 286 ************************************************************************************************ PP alig_pr9_edit 283 sILdIkqgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntata 378 sILdI+qgpkepfrdyVdrf+ktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsq++n++ a POL_HV1MA 287 SILDIRQGPKEPFRDYVDRFFKTLRAEQATQEVKNWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQGVGGPSHKARVLAEAMSQATNSTAA 382 ************************************************************************************************ PP alig_pr9_edit 379 immqkgnfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanfLg 438 immq+gnfkgq+r ikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanfL POL_HV1MA 383 IMMQRGNFKGQKR-IKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLR 441 *************.9*******************************************96 PP >> GAG_HV1YB (Q9IDV8) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 1180.2 3.3 0 0 1 465 [] 1 468 [. 1 468 [. 1.00 Alignments for each domain: == domain 1 score: 1180.2 bits; conditional E-value: 0 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgArAsvL+ggkLd+we i+LrpggkkkyrlkhlVwAsreLerfA+npgL++t+ gc+q+++ql+pal+tgse+LrsL nt+avLycvh++i+v++ GAG_HV1YB 1 MGARASVLTGGKLDQWEAIYLRPGGKKKYRLKHLVWASRELERFACNPGLMDTANGCAQLINQLEPALKTGSEGLRSLXNTLAVLYCVHSNIPVHN 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqktqqaaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLnt 192 t+eALdki+ek+eq+ks++k ++a+ +a+++s++s+nyp+VqnaqgqmVhq+++prtLnAwVkV+eekaf+pe Ipmf+ALsegAtp+dln mLnt GAG_HV1YB 97 TQEALDKIKEKQEQHKSEPKKPEAGTAAAADSSISRNYPLVQNAQGQMVHQPLTPRTLNAWVKVIEEKAFNPEIIPMFMALSEGATPSDLNSMLNT 192 ************************************************************************************************ PP alig_pr9_edit 193 VgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtnnppipVgdiykrwiilgLnkiVrmyspvsILdIk 288 VgghqaAmqmLke+IneeAAewdr+hp ++gp +pgqmr+prgsdIAgttstl+eq+awmt+nppipVgdiy+rwi+lgLn+iVrmyspvsIL+Ik GAG_HV1YB 193 VGGHQAAMQMLKEVINEEAAEWDRTHPAPVGPLPPGQMRDPRGSDIAGTTSTLAEQVAWMTSNPPIPVGDIYRRWIVLGLNRIVRMYSPVSILEIK 288 ************************************************************************************************ PP alig_pr9_edit 289 qgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntataimmqkg 384 qgpkepfrdyVdrfyktLrAeqAtq+VknwmtetlLVqnanpdck+iLkALgpgAtleemmtAcqgVggp+hkArvLAeAm q+q++++ ++ q+g GAG_HV1YB 289 QGPKEPFRDYVDRFYKTLRAEQATQDVKNWMTETLLVQNANPDCKQILKALGPGATLEEMMTACQGVGGPAHKARVLAEAMAQAQTATS-VFVQRG 383 *************************************************************************************9985.****** PP alig_pr9_edit 385 nfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcte..rqanfLgkiwpsskgrpgnflq..srpeptAppees 465 nfkg+r++ikcfncgkeghlArnc+Apr+ gcwkcg+eghqmkdc++ qanfLgk+w+++kgrpgnf+q +r eptApp es GAG_HV1YB 384 NFKGIRKTIKCFNCGKEGHLARNCKAPRRRGCWKCGQEGHQMKDCKNegXQANFLGKGWSPFKGRPGNFPQttTRREPTAPPLES 468 **********************************************9999*********************988**********8 PP >> POL_HV1ET (Q75002) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 1165.2 6.9 0 0 1 437 [. 1 431 [. 1 452 [. 0.98 Alignments for each domain: == domain 1 score: 1165.2 bits; conditional E-value: 0 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgArAs+L+g kLdaweki+Lrpggkk+y+lkhlVwA+reLe+fAlnp+Ll+ts gc+qi++qlqpalqtg+eeL+sLfntva+Lycvhqki++kd POL_HV1ET 1 MGARASILRGEKLDAWEKIKLRPGGKKHYMLKHLVWANRELEKFALNPDLLDTSAGCKQIIKQLQPALQTGTEELKSLFNTVATLYCVHQKIEIKD 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqktqq.aaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLn 191 tkeALdkiee eqn s+qktqq aad+g++ sqnypiVqn+qgqmVhq+is+rtLnAwVkVveekafspeVIpmf+ALsegAtpqdlntmLn POL_HV1ET 97 TKEALDKIEE--EQNESQQKTQQaGAADRGKD---SQNYPIVQNMQGQMVHQPISARTLNAWVKVVEEKAFSPEVIPMFTALSEGATPQDLNTMLN 187 **********..***********445566655...9************************************************************ PP alig_pr9_edit 192 tVgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtnnppipVgdiykrwiilgLnkiVrmyspvsILdI 287 tVgghqaAmqmLk+tIneeAAewdrlhpvhagp+apgqmr+prgsdIAgttstlqeqiawmt+npp+pVgdiykrwiilgLnkiVrmyspvsILdI POL_HV1ET 188 TVGGHQAAMQMLKDTINEEAAEWDRLHPVHAGPVAPGQMRDPRGSDIAGTTSTLQEQIAWMTGNPPVPVGDIYKRWIILGLNKIVRMYSPVSILDI 283 ************************************************************************************************ PP alig_pr9_edit 288 kqgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntataimmqk 383 kqgpkepfrdyVdrf+ktLrAeqAtq+Vknwmt+tlLVqnanpdcktiL+ALgpgA+leemmtAcqgVggp+hkArvLAeAmsqv+nt+ immqk POL_HV1ET 284 KQGPKEPFRDYVDRFFKTLRAEQATQDVKNWMTDTLLVQNANPDCKTILRALGPGASLEEMMTACQGVGGPAHKARVLAEAMSQVNNTT--IMMQK 377 ***************************************************************************************99..9**** PP alig_pr9_edit 384 gnfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanfL 437 +nfkg++r ikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanf POL_HV1ET 378 SNFKGPKRAIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQANFF 431 *****************************************************5 PP >> POL_HV192 (O12158) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 1162.9 6.7 0 0 1 437 [. 1 431 [. 1 451 [. 0.99 Alignments for each domain: == domain 1 score: 1162.9 bits; conditional E-value: 0 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgArAs+L+ggkLdawe+i+L+pggkk+y++khlVwAsreLerfAl+pgLletsegc+qi++qlqpalqtg++eL+sL+ntva+Lycvh kidv+d POL_HV192 1 MGARASILRGGKLDAWERIKLKPGGKKHYMMKHLVWASRELERFALDPGLLETSEGCKQIMKQLQPALQTGTKELISLHNTVATLYCVHEKIDVRD 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqktqqaaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLnt 192 tkeALdki+e eqnks+qktqq a+a+++ +vsqnypiVqn+qgqmVhq+is+rtLnAwVkVveekafspeVIpmf+ALsegAtpqdlntmLnt POL_HV192 97 TKEALDKIKE--EQNKSQQKTQQ--AEAADKGKVSQNYPIVQNLQGQMVHQPISARTLNAWVKVVEEKAFSPEVIPMFTALSEGATPQDLNTMLNT 188 **********..***********..77778889*************************************************************** PP alig_pr9_edit 193 VgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtnnppipVgdiykrwiilgLnkiVrmyspvsILdIk 288 VgghqaAmqmLk+tIneeAAewdrlhpvhagp+apgqmreprgsdIAgttstlqeqi+wmtnnpp+pVgdiykrwiilgLnkiVrmyspvsILdIk POL_HV192 189 VGGHQAAMQMLKDTINEEAAEWDRLHPVHAGPVAPGQMREPRGSDIAGTTSTLQEQITWMTNNPPVPVGDIYKRWIILGLNKIVRMYSPVSILDIK 284 ************************************************************************************************ PP alig_pr9_edit 289 qgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntataimmqkg 384 qgpkepfrdyVdrf+ktLrAeqAtq+Vknwmt+tlLVqnanpdcktiL+ALgpgA+leemmtAcqgVggp+hkArvLAeAms+v+nt+ immq++ POL_HV192 285 QGPKEPFRDYVDRFFKTLRAEQATQDVKNWMTDTLLVQNANPDCKTILRALGPGASLEEMMTACQGVGGPGHKARVLAEAMSKVNNTN--IMMQRS 378 ****************************************************************************************..9***** PP alig_pr9_edit 385 nfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanfL 437 n+kg++r+ikcfncgkeghlArncrAprkkgcwkcgkeghq+kdcterqanf POL_HV192 379 NCKGPKRTIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQVKDCTERQANFF 431 ***************************************************95 PP >> POL_HV193 (O89290) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 1158.7 4.9 0 0 1 436 [. 1 428 [. 1 432 [. 1.00 Alignments for each domain: == domain 1 score: 1158.7 bits; conditional E-value: 0 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAl+pgLletsegcr+i+gqlqp+lqtgseeL+sL+nt+avLy+vhqk++vkd POL_HV193 1 MGARASVLSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFALDPGLLETSEGCRKIIGQLQPSLQTGSEELKSLYNTIAVLYYVHQKVEVKD 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqktqqaaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLnt 192 tkeAL+k+ee eqnk++qktqqa+a++g vsqnypiVqn+qgqmVhq++sprtLnAwVkV+eekafspeVIpmfsALsegAtpqdlntmLnt POL_HV193 97 TKEALEKLEE--EQNKGRQKTQQATAEKG----VSQNYPIVQNLQGQMVHQSLSPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNT 186 **********..**************999....9************************************************************** PP alig_pr9_edit 193 VgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtnnppipVgdiykrwiilgLnkiVrmyspvsILdIk 288 VgghqaAmqmLk+tIneeAAewdrlhp++agpi+pgq+reprgsdIAgttstlqeqi+wmt+npp+pVg++ykrwiilgLnkiVrmyspv ILdI+ POL_HV193 187 VGGHQAAMQMLKDTINEEAAEWDRLHPTQAGPIPPGQIREPRGSDIAGTTSTLQEQIQWMTGNPPVPVGEMYKRWIILGLNKIVRMYSPVGILDIR 282 ************************************************************************************************ PP alig_pr9_edit 289 qgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntataimmqkg 384 qgpkepfrdyVdrf+ktLrAeqAtqeVk wmt+tlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsq++nta immqk+ POL_HV193 283 QGPKEPFRDYVDRFFKTLRAEQATQEVKGWMTDTLLVQNANPDCKTILKALGPGATLEEMMTACQGVGGPSHKARVLAEAMSQATNTA--IMMQKS 376 **************************************************************************************99..9***** PP alig_pr9_edit 385 nfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanf 436 nfkgqrri+kcfncgkegh+A+ncrAprkkgcwkcg+eghqmkdcterqa f POL_HV193 377 NFKGQRRIVKCFNCGKEGHIAKNCRAPRKKGCWKCGREGHQMKDCTERQAKF 428 **************************************************99 PP >> C7TQ69_9HIV1 (C7TQ69) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 1156.7 6.5 0 0 1 436 [. 1 429 [. 1 433 [. 1.00 Alignments for each domain: == domain 1 score: 1156.7 bits; conditional E-value: 0 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgArAsvL+gg Ldawe+irLrpggkkkyrlkhlVwAsreLerfAlnpgLlet egc qil qlqpa +tg+eeL+sLfnt+a+Lycvhqkidvkd C7TQ69_9HIV1 1 MGARASVLRGGQLDAWERIRLRPGGKKKYRLKHLVWASRELERFALNPGLLETPEGCQQILEQLQPAVKTGTEELKSLFNTIATLYCVHQKIDVKD 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqktqqaaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLnt 192 tkeA +k+ee qnk ktqqa ad++n+sqvs nypiVqnaqgqmVhqaisprtLnAwVkV+eekafspeVIpmf+ALsegAtpqdlntmLnt C7TQ69_9HIV1 97 TKEAVEKVEE--LQNK---KTQQAVADTANNSQVSHNYPIVQNAQGQMVHQAISPRTLNAWVKVIEEKAFSPEVIPMFTALSEGATPQDLNTMLNT 187 **********..9996...8**************************************************************************** PP alig_pr9_edit 193 VgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtnnppipVgdiykrwiilgLnkiVrmyspvsILdIk 288 VgghqaAmqmLk+tIn eAAewdrlhpvhagpi+pgqmreprgsdIAgttstlqeqi+wmt+nppipVg+iykrwiilgLnkiVrmyspvsILdI+ C7TQ69_9HIV1 188 VGGHQAAMQMLKDTINDEAAEWDRLHPVHAGPIPPGQMREPRGSDIAGTTSTLQEQIGWMTSNPPIPVGEIYKRWIILGLNKIVRMYSPVSILDIR 283 ************************************************************************************************ PP alig_pr9_edit 289 qgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntataimmqkg 384 qgpkepfrdyVdrf+ktLrAeqAtqeVknwmtetlLVqnanpdcktiL+ Lg+gA+leemmtAcqgVggp+hkArvLAeAmsqvqnt+ immq+g C7TQ69_9HIV1 284 QGPKEPFRDYVDRFFKTLRAEQATQEVKNWMTETLLVQNANPDCKTILRGLGQGASLEEMMTACQGVGGPGHKARVLAEAMSQVQNTN--IMMQRG 377 ****************************************************************************************..9***** PP alig_pr9_edit 385 nfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanf 436 nf+gq++ ikcfncgkeghlArncrAprkkgcwkcg+eghqmkdcterqanf C7TQ69_9HIV1 378 NFRGQKKVIKCFNCGKEGHLARNCRAPRKKGCWKCGREGHQMKDCTERQANF 429 ***************************************************9 PP >> C7TQ75_9HIV1 (C7TQ75) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 1153.7 4.8 0 0 1 436 [. 1 429 [. 1 433 [. 1.00 Alignments for each domain: == domain 1 score: 1153.7 bits; conditional E-value: 0 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgArAsvL+ggkLd wekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegc qi++qlqpa++tg+eeLrsL+ntva+Lycvhq i+v d C7TQ75_9HIV1 1 MGARASVLTGGKLDSWEKIRLRPGGKKKYRLKHLVWASRELERFALNPGLLETSEGCQQIMKQLQPAIKTGTEELRSLYNTVATLYCVHQQIKVDD 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqktqqaaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLnt 192 tkeALdk+ee +qnk kt+qaaad+g+s +vsqnypiVqnaqgqmVhq+isprtLnAwVkV+eekafspeVIpmf+ALsegAtpqdlntmLnt C7TQ75_9HIV1 97 TKEALDKVEE--IQNK---KTEQAAADTGSSRSVSQNYPIVQNAQGQMVHQSISPRTLNAWVKVIEEKAFSPEVIPMFTALSEGATPQDLNTMLNT 187 **********..9997...89*************************************************************************** PP alig_pr9_edit 193 VgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtnnppipVgdiykrwiilgLnkiVrmyspvsILdIk 288 VgghqaAmqmLk+tIn eAAewdrlhpv+agpi+pgq+reprgsdIAgttstlqeqi+wmt+nppipVg+iykrwiilgLnkiVrmyspvsILdI+ C7TQ75_9HIV1 188 VGGHQAAMQMLKDTINDEAAEWDRLHPVQAGPIPPGQIREPRGSDIAGTTSTLQEQITWMTSNPPIPVGEIYKRWIILGLNKIVRMYSPVSILDIR 283 ************************************************************************************************ PP alig_pr9_edit 289 qgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntataimmqkg 384 qgpkepfrdyVdrf+ktLrAeqA+q+VknwmtetlLVqnanpdcktiL+ Lg+gA+leemmtAcqgVggp+hkArvLAeAmsqvqnt+ +mmq+g C7TQ75_9HIV1 284 QGPKEPFRDYVDRFFKTLRAEQASQDVKNWMTETLLVQNANPDCKTILRGLGQGASLEEMMTACQGVGGPGHKARVLAEAMSQVQNTN--VMMQRG 377 ****************************************************************************************..8***** PP alig_pr9_edit 385 nfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanf 436 nf+gq+riikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanf C7TQ75_9HIV1 378 NFRGQKRIIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQANF 429 ***************************************************9 PP >> POL_SIVEK (Q1A249) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 1139.1 6.1 0 0 1 434 [. 1 436 [. 1 446 [. 0.99 Alignments for each domain: == domain 1 score: 1139.1 bits; conditional E-value: 0 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgArAsvL+ggkLd+weki+Lrpggkkky++khlVwAsreLerfA+npgL++t+egc+q+l+ql+pal+tgse+LrsLfnt+avLycvh++i+v++ POL_SIVEK 1 MGARASVLTGGKLDQWEKIYLRPGGKKKYMMKHLVWASRELERFACNPGLMDTAEGCAQLLRQLEPALKTGSEGLRSLFNTLAVLYCVHNNIKVQN 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqktqq.aaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLn 191 t+eAL+k++ek+++++++++++q a+a+a+++s++s+nyp+VqnaqgqmVhq++sprtLnAwVkVveekaf+peVIpmf+ALsegAtpqdlntmLn POL_SIVEK 97 TQEALEKLREKMKAEQKEPEPEQaAGAAAAPESSISRNYPLVQNAQGQMVHQPLSPRTLNAWVKVVEEKAFNPEVIPMFMALSEGATPQDLNTMLN 192 *********************99889********************************************************************** PP alig_pr9_edit 192 tVgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtnnppipVgdiykrwiilgLnkiVrmyspvsILdI 287 tVgghqaAmqmLke+IneeAAewdr hpvh+gpi+pgq+reprgsdIAgttstl+eq+awmt+npp+pVgdiy+rwi+lgLnkiVrmysp+sILdI POL_SIVEK 193 TVGGHQAAMQMLKEVINEEAAEWDRGHPVHMGPIPPGQVREPRGSDIAGTTSTLAEQVAWMTANPPVPVGDIYRRWIVLGLNKIVRMYSPASILDI 288 ************************************************************************************************ PP alig_pr9_edit 288 kqgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntataimmqk 383 kqgpke+frdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdck+iL+ALgpgA+leemmtAcqgVggp+hkArvLAeAm+q+q++++ ++mq+ POL_SIVEK 289 KQGPKETFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKNILRALGPGASLEEMMTACQGVGGPAHKARVLAEAMTQAQTATS-VFMQR 383 **************************************************************************************9985.***** PP alig_pr9_edit 384 gnfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcte..rqa 434 gnfkg+r++ikcfncgkeghlArnc+Aprkkgcwkcg+eghqmkdc++ rq POL_SIVEK 384 GNFKGIRKTIKCFNCGKEGHLARNCKAPRKKGCWKCGQEGHQMKDCRSgeRQF 436 **********************************************9766885 PP >> POL_SIVMB (Q1A267) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 1132.6 4.2 0 0 1 437 [. 1 430 [. 1 439 [. 0.99 Alignments for each domain: == domain 1 score: 1132.6 bits; conditional E-value: 0 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgArAsvL+ggkLd+weki+Lrpggkkky++khlVwAsreLerfA+np+L+et+egc+q+l+ql+pal+tgse+LrsLfnt++vL+cvhq+i+vkd POL_SIVMB 1 MGARASVLTGGKLDRWEKIYLRPGGKKKYMMKHLVWASRELERFACNPSLMETTEGCKQLLQQLEPALKTGSEGLRSLFNTIVVLWCVHQGIPVKD 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqktqqaaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLnt 192 tkeALd+++e +q+k+kq++ aaa+a+++s+vs+n+piV+naqgqmVhq+isprtLnAwVkVveekafspeVIpmf+ALsegAtpqdlntmLnt POL_SIVMB 97 TKEALDQLQE--AQQKGKQEV--AAATADGTSTVSRNFPIVANAQGQMVHQPISPRTLNAWVKVVEEKAFSPEVIPMFMALSEGATPQDLNTMLNT 188 **********..********9..9************************************************************************ PP alig_pr9_edit 193 VgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtnnppipVgdiykrwiilgLnkiVrmyspvsILdIk 288 VgghqaAmqmLke+IneeAAewdrlhpvhagp++pgqmreprgsdIAgttst+qeq++wmt+nppipVgdiykrwiilgLnkiV+my+pvsILdIk POL_SIVMB 189 VGGHQAAMQMLKEVINEEAAEWDRLHPVHAGPVPPGQMREPRGSDIAGTTSTIQEQVGWMTSNPPIPVGDIYKRWIILGLNKIVKMYCPVSILDIK 284 ************************************************************************************************ PP alig_pr9_edit 289 qgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntataimmqkg 384 qgpke+frdyVdrfyktLrAeqAtqeVknwmt+tlLVqnanpdck+iL+ALgpgAtle++++A+qgVggpshkArvLAeAmsq+q++++ +k+ POL_SIVMB 285 QGPKESFRDYVDRFYKTLRAEQATQEVKNWMTDTLLVQNANPDCKSILRALGPGATLEGDEPAFQGVGGPSHKARVLAEAMSQAQHSND----AKR 376 ****************************************************************************************8....9** PP alig_pr9_edit 385 nfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcte.rqanfL 437 +fkg++ri+kcfncgkegh+Arnc+Apr+kgcwkcg+eghqm++ct+ rqanf POL_SIVMB 377 QFKGPKRIVKCFNCGKEGHIARNCKAPRRKGCWKCGQEGHQMRNCTNeRQANFF 430 **********************************************99****95 PP >> POL_HV1YF (O91080) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 1128.8 1.6 0 0 1 433 [. 1 435 [. 1 441 [. 0.99 Alignments for each domain: == domain 1 score: 1128.8 bits; conditional E-value: 0 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgArAsvL+ggkLd+we+i+Lrpggkkkyr+khlVwAsreLerfA+npgL++t++gc+++l+ql+pal+tgseeLrsL+n++avLycvh++i++++ POL_HV1YF 1 MGARASVLTGGKLDQWESIYLRPGGKKKYRMKHLVWASRELERFACNPGLMDTADGCAKLLNQLEPALKTGSEELRSLYNALAVLYCVHSRIQIHN 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqktqqaaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLnt 192 t+eALdki+ek+eq+k+++k+++a+a+a+++s++s+nyp+Vq+aqgqmVhq+++prtLnAwVkV+eekafspeVIpmf+ALsegAtp+dlntmLnt POL_HV1YF 97 TQEALDKIKEKQEQHKPEPKNPEAGAAAATDSNISRNYPLVQTAQGQMVHQPLTPRTLNAWVKVIEEKAFSPEVIPMFMALSEGATPSDLNTMLNT 192 ************************************************************************************************ PP alig_pr9_edit 193 VgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtnnppipVgdiykrwiilgLnkiVrmyspvsILdIk 288 VgghqaAmqmLke+IneeAA+wdr+hpv++gp +pgq+r+prgsdIAgttstl+eq+awmt+npp+pVgdiy+rwi+lgLn+iVrmyspvsIL+Ik POL_HV1YF 193 VGGHQAAMQMLKEVINEEAADWDRTHPVPVGPLPPGQLRDPRGSDIAGTTSTLAEQVAWMTANPPVPVGDIYRRWIVLGLNRIVRMYSPVSILEIK 288 ************************************************************************************************ PP alig_pr9_edit 289 qgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntataimmqkg 384 qgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdck+ LkALgpgAtleemmtAcqgVggp+hkArvLAeAmsqvq+++t++++q+g POL_HV1YF 289 QGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKQLLKALGPGATLEEMMTACQGVGGPAHKARVLAEAMSQVQQPTTSVFAQRG 384 ************************************************************************************************ PP alig_pr9_edit 385 nfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcte..rq 433 nfkg+r++ikcfncgkeghlArnc+Apr+ gcwkcg+eghqmkdc++ rq POL_HV1YF 385 NFKGIRKPIKCFNCGKEGHLARNCKAPRRGGCWKCGQEGHQMKDCKNegRQ 435 **********************************************97888 PP >> C7TQ93_9HIV1 (C7TQ93) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 1125.0 6.5 0 0 1 446 [. 1 440 [. 1 447 [. 0.99 Alignments for each domain: == domain 1 score: 1125.0 bits; conditional E-value: 0 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgArAs+Lsgg Ld+wekirLrpggkkkyrlkhlVwAsreLe+f +npgLlet+egc qil qlqpa +tgseeL+sLfntvavLycvhq+i vkd C7TQ93_9HIV1 1 MGARASILSGGQLDRWEKIRLRPGGKKKYRLKHLVWASRELEKFSINPGLLETAEGCQQILEQLQPAVKTGSEELKSLFNTVAVLYCVHQRINVKD 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqktqqaaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLnt 192 tkeALdk+ee qnk k+qqaa +g+ss+vsqnypiVqnaqgqmVhqa+sprtLnAwVkVveekafspeVIpmf ALsegAtpqdlntm nt C7TQ93_9HIV1 97 TKEALDKVEE--MQNK---KAQQAADNTGSSSKVSQNYPIVQNAQGQMVHQALSPRTLNAWVKVVEEKAFSPEVIPMFVALSEGATPQDLNTMMNT 187 **********..8996...89*************************************************************************** PP alig_pr9_edit 193 VgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtnnppipVgdiykrwiilgLnkiVrmyspvsILdIk 288 VgghqaAmqm k+tIneeAAewdrlhpv+agpiapgq+reprgsdIAgttstlqeqiawmt+nppipVg+iykrwiilgLnkiVrmyspvsILdI+ C7TQ93_9HIV1 188 VGGHQAAMQMIKDTINEEAAEWDRLHPVQAGPIAPGQIREPRGSDIAGTTSTLQEQIAWMTSNPPIPVGEIYKRWIILGLNKIVRMYSPVSILDIR 283 ************************************************************************************************ PP alig_pr9_edit 289 qgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntataimmqkg 384 qgpkepfrdyVdrf+ktLrAeqAtqeVk wmt+tlLVqnanpdcktiL+ Lg+gA+leemmtAcqgVggp+hkArvLAeAmsqvqn++ i q g C7TQ93_9HIV1 284 QGPKEPFRDYVDRFFKTLRAEQATQEVKAWMTDTLLVQNANPDCKTILRGLGQGASLEEMMTACQGVGGPGHKARVLAEAMSQVQNAN--ILVQGG 377 ****************************************************************************************..9***** PP alig_pr9_edit 385 nfkgqr.riikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanfLgkiwpsskg 446 nfkgqr +iikcfncgkeghlArnc+Aprkkgcwkcg+eghqmkdcterqanf i s g C7TQ93_9HIV1 378 NFKGQRgKIIKCFNCGKEGHLARNCKAPRKKGCWKCGREGHQMKDCTERQANFFREILASQQG 440 *****9899********************************************9888777665 PP >> POL_HV1YB (Q9IDV9) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 1113.5 3.5 0 0 1 437 [. 1 438 [. 1 450 [. 0.99 Alignments for each domain: == domain 1 score: 1113.5 bits; conditional E-value: 0 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgArAsvL+ggkLd+we i+LrpggkkkyrlkhlVwAsreLerfA+npgL++t+ gc+q+++ql+pal+tgse+LrsL nt+avLycvh++i+v++ POL_HV1YB 1 MGARASVLTGGKLDQWEAIYLRPGGKKKYRLKHLVWASRELERFACNPGLMDTANGCAQLINQLEPALKTGSEGLRSLXNTLAVLYCVHSNIPVHN 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqktqqaaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLnt 192 t+eALdki+ek+eq+ks++k ++a+ +a+++s++s+nyp+VqnaqgqmVhq+++prtLnAwVkV+eekaf+pe Ipmf+ALsegAtp+dln mLnt POL_HV1YB 97 TQEALDKIKEKQEQHKSEPKKPEAGTAAAADSSISRNYPLVQNAQGQMVHQPLTPRTLNAWVKVIEEKAFNPEIIPMFMALSEGATPSDLNSMLNT 192 ************************************************************************************************ PP alig_pr9_edit 193 VgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtnnppipVgdiykrwiilgLnkiVrmyspvsILdIk 288 VgghqaAmqmLke+IneeAAewdr+hp ++gp +pgqmr+prgsdIAgttstl+eq+awmt+nppipVgdiy+rwi+lgLn+iVrmyspvsIL+Ik POL_HV1YB 193 VGGHQAAMQMLKEVINEEAAEWDRTHPAPVGPLPPGQMRDPRGSDIAGTTSTLAEQVAWMTSNPPIPVGDIYRRWIVLGLNRIVRMYSPVSILEIK 288 ************************************************************************************************ PP alig_pr9_edit 289 qgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntataimmqkg 384 qgpkepfrdyVdrfyktLrAeqAtq+VknwmtetlLVqnanpdck+iLkALgpgAtleemmtAcqgVggp+hkArvLAeAm q+q++++ ++ q+g POL_HV1YB 289 QGPKEPFRDYVDRFYKTLRAEQATQDVKNWMTETLLVQNANPDCKQILKALGPGATLEEMMTACQGVGGPAHKARVLAEAMAQAQTATS-VFVQRG 383 *************************************************************************************9985.****** PP alig_pr9_edit 385 nfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcte..rqanfL 437 nfkg+r++ikcfncgkeghlArnc+Apr+ gcwkcg+eghqmkdc++ qanf POL_HV1YB 384 NFKGIRKTIKCFNCGKEGHLARNCKAPRRRGCWKCGQEGHQMKDCKNegXQANFR 438 **********************************************9999****6 PP >> GAG_HV1MV (Q79665) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 995.6 6.2 3.8e-302 3.8e-302 1 464 [. 1 466 [. 1 467 [. 0.97 Alignments for each domain: == domain 1 score: 995.6 bits; conditional E-value: 3.8e-302 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgArAsvL+g kLdawe+irLrpg kk yrlkhlVwAsreLer+A+npgLlet+eg q+l+ql+pal+tgse L+sL n++avL+cvh++ d++d GAG_HV1MV 1 MGARASVLTGSKLDAWERIRLRPGSKKAYRLKHLVWASRELERYACNPGLLETAEGTEQLLQQLEPALKTGSEDLKSLWNAIAVLWCVHNRFDIRD 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqktqqaaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLnt 192 t+ A k++e ++ s++ + +aa + + q sqnypiV naqgqmVhqaisprtLnAwVk veekaf+pe Ipmf+ALsegA p d ntmLn+ GAG_HV1MV 97 TQQAIQKLKEVMA---SRKSA-EAAKEETSPRQTSQNYPIVTNAQGQMVHQAISPRTLNAWVKAVEEKAFNPEIIPMFMALSEGAVPYDINTMLNA 188 **********555...44444.5666666677**************************************************************** PP alig_pr9_edit 193 VgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmt.nnppipVgdiykrwiilgLnkiVrmyspvsILdI 287 gghq+A q+Lke+IneeAAewdr+hp +gp +pgq+rep gsdIAgttst qeqi w+t + ipVgdiy+ wi+lgLnk V+myspvsILdI GAG_HV1MV 189 IGGHQGALQVLKEVINEEAAEWDRTHPPAMGPLPPGQIREPTGSDIAGTTSTQQEQIIWTTrGANSIPVGDIYRKWIVLGLNKMVKMYSPVSILDI 284 ************************************************************955678****************************** PP alig_pr9_edit 288 kqgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqnt....atai 379 +qgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqn npdck+iLkALgp Atleemm AcqgVggp hkA LAeAm +q+ ta+ GAG_HV1MV 285 RQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNSNPDCKQILKALGPEATLEEMMVACQGVGGPTHKAKILAEAMASAQQDlkggYTAV 380 **************************************************************************************963333589* PP alig_pr9_edit 380 mmqkgnfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcte.rqanfLgkiwpsskgrpgnflqsrpeptAppee 464 +mq+g+ + + +ikcfncgkegh+A+ncrAprk gcwkcg+eghqmkdc++ rqanfLgk wp+ rpgn +q+ p+App e GAG_HV1MV 381 FMQRGQNPNRKGPIKCFNCGKEGHIAKNCRAPRKRGCWKCGQEGHQMKDCKNgRQANFLGKYWPPGGTRPGNYVQKQVSPSAPPME 466 ************************************************************************************88 PP >> GAG_HV1AN (Q77372) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 980.9 5.8 1e-297 1e-297 1 464 [. 1 466 [. 1 467 [. 0.97 Alignments for each domain: == domain 1 score: 980.9 bits; conditional E-value: 1e-297 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgA AsvL+g kLdawe irL+pg kkkyrlkhlVwAsreLerfA+np Llet+eg ++l+ql+pal+tgs L sL n+++vL+cvh++ ++ d GAG_HV1AN 1 MGASASVLTGSKLDAWEQIRLKPGSKKKYRLKHLVWASRELERFACNPELLETAEGNEKLLQQLEPALKTGSDSLQSLWNAIVVLWCVHNRYKIGD 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqktqqaaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLnt 192 t+ A k++e ++ ks + d++ q+ qnypiV naqgqmVhqaisprtLnAwVk veekaf+pe Ipmf+ALsegA d ntmLn+ GAG_HV1AN 97 TQQAIQKLKEVMGSRKSADAA---KEDTS-ARQAGQNYPIVSNAQGQMVHQAISPRTLNAWVKAVEEKAFNPEIIPMFMALSEGAISYDINTMLNA 188 **********77666655443...33555.569*************************************************************** PP alig_pr9_edit 193 VgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtn.nppipVgdiykrwiilgLnkiVrmyspvsILdI 287 gghq+A q+Lke+IneeA ewdr+hp ++gp +pgq+rep gsdIAgttst qeqi w+t n pipVgdiy+ wi+lgLnk V+myspvsILdI GAG_HV1AN 189 IGGHQGALQVLKEVINEEAVEWDRTHPPPVGPLPPGQIREPTGSDIAGTTSTQQEQIHWTTRpNQPIPVGDIYRKWIVLGLNKMVKMYSPVSILDI 284 *************************************************************66********************************* PP alig_pr9_edit 288 kqgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqnt....atai 379 kqgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdck+iLk LgpgAtleemm AcqgVggp hkArvLAeAm +q+ ta+ GAG_HV1AN 285 KQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKQILKSLGPGATLEEMMVACQGVGGPTHKARVLAEAMATAQQDlkggYTAV 380 **************************************************************************************963333589* PP alig_pr9_edit 380 mmqkgnfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcte.rqanfLgkiwpsskgrpgnflqsrpeptAppee 464 +mq+g+ + +ikcfncgkegh+ArncrAprkkgcwkcg+eghqmkdc++ qanfLgk wp+ rpgn +q p+App e GAG_HV1AN 381 FMQRGQNPIRKGTIKCFNCGKEGHIARNCRAPRKKGCWKCGQEGHQMKDCRNgKQANFLGKYWPPGGTRPGNYVQRPAHPSAPPME 466 ****************************************************9**********************999******88 PP >> POL_HV1MV (Q79666) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 952.5 4.7 4e-289 4e-289 1 437 [. 1 439 [. 1 446 [. 0.96 Alignments for each domain: == domain 1 score: 952.5 bits; conditional E-value: 4e-289 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgArAsvL+g kLdawe+irLrpg kk yrlkhlVwAsreLer+A+npgLlet+eg q+l+ql+pal+tgse L+sL n++avL+cvh++ d++d POL_HV1MV 1 MGARASVLTGSKLDAWERIRLRPGSKKAYRLKHLVWASRELERYACNPGLLETAEGTEQLLQQLEPALKTGSEDLKSLWNAIAVLWCVHNRFDIRD 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqktqqaaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLnt 192 t+ A k++e ++ s++ + +aa + + q sqnypiV naqgqmVhqaisprtLnAwVk veekaf+pe Ipmf+ALsegA p d ntmLn+ POL_HV1MV 97 TQQAIQKLKEVMA---SRKSA-EAAKEETSPRQTSQNYPIVTNAQGQMVHQAISPRTLNAWVKAVEEKAFNPEIIPMFMALSEGAVPYDINTMLNA 188 **********555...44444.5666666677**************************************************************** PP alig_pr9_edit 193 VgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmt.nnppipVgdiykrwiilgLnkiVrmyspvsILdI 287 gghq+A q+Lke+IneeAAewdr+hp +gp +pgq+rep gsdIAgttst qeqi w+t + ipVgdiy+ wi+lgLnk V+myspvsILdI POL_HV1MV 189 IGGHQGALQVLKEVINEEAAEWDRTHPPAMGPLPPGQIREPTGSDIAGTTSTQQEQIIWTTrGANSIPVGDIYRKWIVLGLNKMVKMYSPVSILDI 284 ************************************************************955678****************************** PP alig_pr9_edit 288 kqgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqnt....atai 379 +qgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqn npdck+iLkALgp Atleemm AcqgVggp hkA LAeAm +q+ ta+ POL_HV1MV 285 RQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNSNPDCKQILKALGPEATLEEMMVACQGVGGPTHKAKILAEAMASAQQDlkggYTAV 380 **************************************************************************************963333589* PP alig_pr9_edit 380 mmqkgnfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcte.rqanfL 437 +mq+g+ + + +ikcfncgkegh+A+ncrAprk gcwkcg+eghqmkdc++ rqanf POL_HV1MV 381 FMQRGQNPNRKGPIKCFNCGKEGHIAKNCRAPRKRGCWKCGQEGHQMKDCKNgRQANFF 439 **********************************************************6 PP >> POL_SIVCZ (P17283) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 97.3 3.0 1.6e-30 1.6e-30 1 45 [. 1 45 [. 1 48 [. 0.98 2 ! 855.6 4.6 7.7e-260 7.7e-260 105 438 .. 46 386 .. 45 411 .. 0.95 Alignments for each domain: == domain 1 score: 97.3 bits; conditional E-value: 1.6e-30 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfA 45 mgArAsvL+ggkLd+wek+rLrpgg+k+y++khlVwAsreLerfA POL_SIVCZ 1 MGARASVLTGGKLDRWEKVRLRPGGRKRYMMKHLVWASRELERFA 45 9*******************************************9 PP == domain 2 score: 855.6 bits; conditional E-value: 7.7e-260 alig_pr9_edit 105 eekheqnkskqk....tqq..aaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLntVg 194 +++h++++sk++ +++ a+++a++s+++s+nyp+VqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegA+pqd+ntmLn+Vg POL_SIVCZ 46 KRHHGEQQSKTEsnsgSREggASQGASASAGISGNYPLVQNAQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGALPQDVNTMLNAVG 141 68999******97666566789999*********************************************************************** PP alig_pr9_edit 195 ghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtnnppipVgdiykrwiilgLnkiVrmyspvsILdIkqg 290 ghq+Amq+Lke+IneeAAewdrlhp+hagpiapgq+reprgsdIAgttstlqeqi+w+t+nppipVgd+y+rw+ilgLnk+Vrmy+pvsILdI+qg POL_SIVCZ 142 GHQGAMQVLKEVINEEAAEWDRLHPTHAGPIAPGQLREPRGSDIAGTTSTLQEQIGWTTANPPIPVGDVYRRWVILGLNKVVRMYCPVSILDIRQG 237 ************************************************************************************************ PP alig_pr9_edit 291 pkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntata.immqkgn 385 pkepfrdyVdrfyktLrAeqA+qeVknwmt+tlLVqnanpdck+iLkALgpgAtleemmtAcqgVggpshkArvLAeAms+vqn+++a +++qkg+ POL_SIVCZ 238 PKEPFRDYVDRFYKTLRAEQASQEVKNWMTDTLLVQNANPDCKQILKALGPGATLEEMMTACQGVGGPSHKARVLAEAMSMVQNQGRAdVFFQKGQ 333 ***************************************************************************************99******* PP alig_pr9_edit 386 fkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanfLg 438 ++g++r+ikcfncgkeghlArnc+Apr+kgcw+cg+eghqmkdct+rq+nf POL_SIVCZ 334 GAGPKRKIKCFNCGKEGHLARNCKAPRRKGCWRCGQEGHQMKDCTGRQVNFFR 386 **************************************************964 PP >> POL_SIVCZ (P17283) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 97.3 3.0 1.6e-30 1.6e-30 1 45 [. 1 45 [. 1 48 [. 0.98 2 ! 855.6 4.6 7.7e-260 7.7e-260 105 438 .. 46 386 .. 45 411 .. 0.95 Alignments for each domain: == domain 1 score: 97.3 bits; conditional E-value: 1.6e-30 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfA 45 mgArAsvL+ggkLd+wek+rLrpgg+k+y++khlVwAsreLerfA POL_SIVCZ 1 MGARASVLTGGKLDRWEKVRLRPGGRKRYMMKHLVWASRELERFA 45 9*******************************************9 PP == domain 2 score: 855.6 bits; conditional E-value: 7.7e-260 alig_pr9_edit 105 eekheqnkskqk....tqq..aaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLntVg 194 +++h++++sk++ +++ a+++a++s+++s+nyp+VqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegA+pqd+ntmLn+Vg POL_SIVCZ 46 KRHHGEQQSKTEsnsgSREggASQGASASAGISGNYPLVQNAQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGALPQDVNTMLNAVG 141 68999******97666566789999*********************************************************************** PP alig_pr9_edit 195 ghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtnnppipVgdiykrwiilgLnkiVrmyspvsILdIkqg 290 ghq+Amq+Lke+IneeAAewdrlhp+hagpiapgq+reprgsdIAgttstlqeqi+w+t+nppipVgd+y+rw+ilgLnk+Vrmy+pvsILdI+qg POL_SIVCZ 142 GHQGAMQVLKEVINEEAAEWDRLHPTHAGPIAPGQLREPRGSDIAGTTSTLQEQIGWTTANPPIPVGDVYRRWVILGLNKVVRMYCPVSILDIRQG 237 ************************************************************************************************ PP alig_pr9_edit 291 pkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntata.immqkgn 385 pkepfrdyVdrfyktLrAeqA+qeVknwmt+tlLVqnanpdck+iLkALgpgAtleemmtAcqgVggpshkArvLAeAms+vqn+++a +++qkg+ POL_SIVCZ 238 PKEPFRDYVDRFYKTLRAEQASQEVKNWMTDTLLVQNANPDCKQILKALGPGATLEEMMTACQGVGGPSHKARVLAEAMSMVQNQGRAdVFFQKGQ 333 ***************************************************************************************99******* PP alig_pr9_edit 386 fkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanfLg 438 ++g++r+ikcfncgkeghlArnc+Apr+kgcw+cg+eghqmkdct+rq+nf POL_SIVCZ 334 GAGPKRKIKCFNCGKEGHLARNCKAPRRKGCWRCGQEGHQMKDCTGRQVNFFR 386 **************************************************964 PP >> POL_HV1AN (Q77373) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 931.7 5.1 7.6e-283 7.6e-283 1 432 [. 1 434 [. 1 444 [. 0.96 Alignments for each domain: == domain 1 score: 931.7 bits; conditional E-value: 7.6e-283 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgA AsvL+g kLdawe irL+pg kkkyrlkhlVwAsreLerfA+np Llet+eg ++l+ql+pal+tgs L sL n+++vL+cvh++ ++ d POL_HV1AN 1 MGASASVLTGSKLDAWEQIRLKPGSKKKYRLKHLVWASRELERFACNPELLETAEGNEKLLQQLEPALKTGSDSLQSLWNAIVVLWCVHNRYKIGD 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqktqqaaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLnt 192 t+ A k++e ++ ks + d++ q+ qnypiV naqgqmVhqaisprtLnAwVk veekaf+pe Ipmf+ALsegA d ntmLn+ POL_HV1AN 97 TQQAIQKLKEVMGSRKSADAA---KEDTS-ARQAGQNYPIVSNAQGQMVHQAISPRTLNAWVKAVEEKAFNPEIIPMFMALSEGAISYDINTMLNA 188 **********77666655443...33555.569*************************************************************** PP alig_pr9_edit 193 VgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtn.nppipVgdiykrwiilgLnkiVrmyspvsILdI 287 gghq+A q+Lke+IneeA ewdr+hp ++gp +pgq+rep gsdIAgttst qeqi w+t n pipVgdiy+ wi+lgLnk V+myspvsILdI POL_HV1AN 189 IGGHQGALQVLKEVINEEAVEWDRTHPPPVGPLPPGQIREPTGSDIAGTTSTQQEQIHWTTRpNQPIPVGDIYRKWIVLGLNKMVKMYSPVSILDI 284 *************************************************************66********************************* PP alig_pr9_edit 288 kqgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqnt....atai 379 kqgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdck+iLk LgpgAtleemm AcqgVggp hkArvLAeAm +q+ ta+ POL_HV1AN 285 KQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKQILKSLGPGATLEEMMVACQGVGGPTHKARVLAEAMATAQQDlkggYTAV 380 **************************************************************************************963333589* PP alig_pr9_edit 380 mmqkgnfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcte.r 432 +mq+g+ + +ikcfncgkegh+ArncrAprkkgcwkcg+eghqmkdc++ POL_HV1AN 381 FMQRGQNPIRKGTIKCFNCGKEGHIARNCRAPRKKGCWKCGQEGHQMKDCRNgK 434 ***************************************************943 PP >> GAG_SIVTN (Q8AII2) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 856.8 8.5 3.4e-260 3.4e-260 1 458 [. 1 486 [. 1 493 [. 0.90 Alignments for each domain: == domain 1 score: 856.8 bits; conditional E-value: 3.4e-260 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgArAsvL+g kLd we+irL+ g+kky khlVwA eL rfA npgL+e egc +i+ qlqp+ gs e +sLfnt+ vLycvh + v+d GAG_SIVTN 1 MGARASVLRGDKLDTWESIRLKSRGRKKYLIKHLVWAGSELQRFAMNPGLMENVEGCWKIILQLQPSVDIGSPEIISLFNTICVLYCVHAGERVQD 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqk......................tqqaaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeV 170 t eA ++ k +k t ++ ++ + + s+ yp aqg hq+isprtLnAwV V+eek f+peV GAG_SIVTN 97 TEEAVKIVKMKLTVQKNNSTatssgqrqnagekeetvppsgnTGNTGRATET-PSGSRLYPVITDAQGVARHQPISPRTLNAWVRVIEEKGFNPEV 191 ****987776643333222112344333333333554443332223333332.3569*************************************** PP alig_pr9_edit 171 IpmfsALsegAtpqdlntmLntVgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmt...nnppipVgdi 263 IpmfsALsegAtp dln mLn+Vg hqaAmqmLke+IneeAAewdr hp hagp g +rep g dIAgttstlqeq+ wmt + +pVgdi GAG_SIVTN 192 IPMFSALSEGATPYDLNSMLNAVGEHQAAMQMLKEVINEEAAEWDRAHPAHAGPQQAGMLREPTGADIAGTTSTLQEQVLWMTtpqAQGGVPVGDI 287 ***********************************************************************************4444567****** PP alig_pr9_edit 264 ykrwiilgLnkiVrmyspvsILdIkqgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggps 359 ykrwiilgLnk VrmyspvsILdIkqgpkepfrdyVdrfykt rAeqA+q Vk wmtetlLVqnanpdck iLkALg+gAtleem tAcqgVggps GAG_SIVTN 288 YKRWIILGLNKLVRMYSPVSILDIKQGPKEPFRDYVDRFYKTIRAEQASQPVKTWMTETLLVQNANPDCKHILKALGQGATLEEMLTACQGVGGPS 383 ************************************************************************************************ PP alig_pr9_edit 360 hkArvLAeAmsqvqntataimmqkgnfkgqrr.iikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterq....anfLgkiwpsskgrpgn 450 hkA LAeAm ++ + m q g ++ cfncgk gh ArncrAprkkgcw+cg+eghqmkdct r +nfLgk p rpgn GAG_SIVTN 384 HKAKILAEAMASATAGGV-NMLQGGKRPPLKKgQLQCFNCGKVGHTARNCRAPRKKGCWRCGQEGHQMKDCTTRNnstgVNFLGKRTPLWGCRPGN 478 *************99994.77777765444442357************************************97533348**************** PP alig_pr9_edit 451 flqsrpep 458 f+q+ pe GAG_SIVTN 479 FVQNTPEK 486 ******95 PP >> POL_SIVTN (Q8AII1) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 825.3 6.2 1.2e-250 1.2e-250 1 433 [. 1 457 [. 1 470 [. 0.90 Alignments for each domain: == domain 1 score: 825.3 bits; conditional E-value: 1.2e-250 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgArAsvL+g kLd we+irL+ g+kky khlVwA eL rfA npgL+e egc +i+ qlqp+ gs e +sLfnt+ vLycvh + v+d POL_SIVTN 1 MGARASVLRGDKLDTWESIRLKSRGRKKYLIKHLVWAGSELQRFAMNPGLMENVEGCWKIILQLQPSVDIGSPEIISLFNTICVLYCVHAGERVQD 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqk......................tqqaaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeV 170 t eA ++ k +k t ++ ++ + + s+ yp aqg hq+isprtLnAwV V+eek f+peV POL_SIVTN 97 TEEAVKIVKMKLTVQKNNSTatssgqrqnagekeetvppsgnTGNTGRATET-PSGSRLYPVITDAQGVARHQPISPRTLNAWVRVIEEKGFNPEV 191 ****987776643333222112344333333333554443332223333332.3569*************************************** PP alig_pr9_edit 171 IpmfsALsegAtpqdlntmLntVgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmt...nnppipVgdi 263 IpmfsALsegAtp dln mLn+Vg hqaAmqmLke+IneeAAewdr hp hagp g +rep g dIAgttstlqeq+ wmt + +pVgdi POL_SIVTN 192 IPMFSALSEGATPYDLNSMLNAVGEHQAAMQMLKEVINEEAAEWDRAHPAHAGPQQAGMLREPTGADIAGTTSTLQEQVLWMTtpqAQGGVPVGDI 287 ***********************************************************************************4444567****** PP alig_pr9_edit 264 ykrwiilgLnkiVrmyspvsILdIkqgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggps 359 ykrwiilgLnk VrmyspvsILdIkqgpkepfrdyVdrfykt rAeqA+q Vk wmtetlLVqnanpdck iLkALg+gAtleem tAcqgVggps POL_SIVTN 288 YKRWIILGLNKLVRMYSPVSILDIKQGPKEPFRDYVDRFYKTIRAEQASQPVKTWMTETLLVQNANPDCKHILKALGQGATLEEMLTACQGVGGPS 383 ************************************************************************************************ PP alig_pr9_edit 360 hkArvLAeAmsqvqntataimmqkgnfkgqrr.iikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterq 433 hkA LAeAm ++ + m q g ++ cfncgk gh ArncrAprkkgcw+cg+eghqmkdct r POL_SIVTN 384 HKAKILAEAMASATAGGV-NMLQGGKRPPLKKgQLQCFNCGKVGHTARNCRAPRKKGCWRCGQEGHQMKDCTTRN 457 *************99994.77777765444442357************************************984 PP >> GAG_SIVSP (P19504) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 714.6 5.3 3.5e-217 3.5e-217 1 463 [. 1 464 [. 1 465 [. 0.95 Alignments for each domain: == domain 1 score: 714.6 bits; conditional E-value: 3.5e-217 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgAr svLsg k d ekirLrpggkk+y lkh+VwA eL rf l +Lle +egc +il l p tgse L+sL+ntv vL+c+h +vk GAG_SIVSP 1 MGARNSVLSGKKADELEKIRLRPGGKKRYQLKHIVWAANELDRFGLAESLLENKEGCQKILSVLAPLVPTGSENLKSLYNTVCVLWCIHAEEKVKH 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnksk.qktqqaaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLn 191 t eA ++++ + + + k + ++ +++ s+ +nyp Vq + g h ++sprtLnAwVk +eek f eV p f ALseg tp d n mLn GAG_SIVSP 97 TEEAKQIVQRHLVVETGTaDKMPATSRPTAPPSGKGGNYP-VQQIGGNYTHLPLSPRTLNAWVKLIEEKKFGAEVVPGFQALSEGCTPYDINQMLN 191 **********988777651578889999************.88899************************************************** PP alig_pr9_edit 192 tVgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtn.nppipVgdiykrwiilgLnkiVrmyspvsILd 286 Vg hqaAmq e IneeAA+wd hp++ gpi+pgq+reprgsdIAgttst eqi+wm pipVg iy+rwi lgL k Vrmy p+ ILd GAG_SIVSP 192 CVGEHQAAMQIIREIINEEAADWDLQHPQP-GPIPPGQLREPRGSDIAGTTSTVDEQIQWMYRqQNPIPVGNIYRRWIQLGLQKCVRMYNPTNILD 286 ****************************76.******************************862579***************************** PP alig_pr9_edit 287 IkqgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntataimmq 382 kqgpkepf yVdrfyk LrAeq Vknwmt tlL qnanpdck Lk Lg tleem tAcqgVggp+ kAr AeA + +++ ++ GAG_SIVSP 287 VKQGPKEPFQSYVDRFYKSLRAEQTDPAVKNWMTQTLLIQNANPDCKLVLKGLGINPTLEEMLTACQGVGGPGQKARLMAEALKDALTQGP-LPFA 381 ******************************************************************************************7.7888 PP alig_pr9_edit 383 kgnfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanfLgkiwpsskgrpgnflq....srpeptAppe 463 + kgqr+iikc ncgkegh Ar crApr+ gcwkcgk gh m c erqa fLg + k p nf+ ptAppe GAG_SIVSP 382 AVQQKGQRKIIKCWNCGKEGHSARQCRAPRRQGCWKCGKAGHVMAKCPERQAGFLGLGPWGKK--PRNFPMaqmpQGLTPTAPPE 464 8999****************************************************8855444..77887542444568*****8 PP >> Q87107_SIVSA (Q87107) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 703.6 3.1 7.4e-214 7.4e-214 1 464 [. 1 485 [. 1 486 [. 0.90 Alignments for each domain: == domain 1 score: 703.6 bits; conditional E-value: 7.4e-214 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgA svLsg kLda e++rLrp gkkky+l hlVwAs eL rf l Llet+eg +il l p tgse L+ Lfn+ vL c+h i+vkd Q87107_SIVSA 1 MGASNSVLSGRKLDAFESVRLRPNGKKKYKLRHLVWASKELDRFSLSANLLETKEGVVKILSVLLPLVPTGSENLIALFNLCCVLACIHAEIKVKD 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekh..eqnk.......skqktqqaaad...agnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALseg 180 t eA k++e e +++k qa + + s+ s+nypiV q Vhq++sprtLnAwVkV+eek fs eV pmfsAL eg Q87107_SIVSA 97 TEEAKAKVKEEVpaEMTEsatatssGQTKELQAKKKnepTVTPSGGSRNYPIVSV-NNQWVHQPLSPRTLNAWVKVIEEKKFSAEVVPMFSALAEG 191 *******999532232331111111455666655431124556889*******75.579************************************* PP alig_pr9_edit 181 AtpqdlntmLntVgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmt.nnppipVgdiykrwiilgLnki 275 A p d n mLn+Vg hq+A q k++IneeAA+wd hp + p a g +r+p gsdIAgttst+qeqi w+t + + Vg iyk wiilgL k Q87107_SIVSA 192 AIPYDINQMLNAVGEHQGALQIVKDVINEEAADWDLRHPPPQQPPAQGVLRDPQGSDIAGTTSTIQEQIEWTTrAQNAVNVGNIYKGWIILGLQKC 287 ************************************************************************955689****************** PP alig_pr9_edit 276 VrmyspvsILdIkqgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsq 371 V+my pv ILdIkqgpkepf dyVdrfyk LrAeq Vknwmt lL qnanpdckt Lk Lg tleem tAcqg gg hkAr AeAm+ Q87107_SIVSA 288 VKMYNPVNILDIKQGPKEPFKDYVDRFYKALRAEQTDPAVKNWMTQSLLIQNANPDCKTVLKGLGMNPTLEEMLTACQGIGGAQHKARLMAEAMTA 383 ***********************************************************************************************9 PP alig_pr9_edit 372 vqntata..immqkgnf.kgqr....r....iikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanfLgkiwpsskgrpgnflqsrp 456 + ++ t i+ q g +g+ r ikc ncgk ghlAr c+Apr+ gcwkcg hqmkdc q+nfLg + p +g p nf+ + Q87107_SIVSA 384 AFQQQTVgnIFVQQGARpRGPLggrgRplnpNIKCYNCGKPGHLARFCKAPRRQGCWKCGSPDHQMKDCQ-KQVNFLGFG-PWGRGKPRNFPLTSI 477 865555445**998763344432212322336*************************************7.6******75.999************ PP alig_pr9_edit 457 eptAppee 464 ptApp e Q87107_SIVSA 478 RPTAPPME 485 ******98 PP >> POL_SIVSP (P19505) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 703.3 4.1 9e-214 9e-214 1 448 [. 1 446 [. 1 449 [. 0.97 Alignments for each domain: == domain 1 score: 703.3 bits; conditional E-value: 9e-214 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgAr svLsg k d ekirLrpggkk+y lkh+VwA eL rf l +Lle +egc +il l p tgse L+sL+ntv vL+c+h +vk POL_SIVSP 1 MGARNSVLSGKKADELEKIRLRPGGKKRYQLKHIVWAANELDRFGLAESLLENKEGCQKILSVLAPLVPTGSENLKSLYNTVCVLWCIHAEEKVKH 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnksk.qktqqaaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLn 191 t eA ++++ + + + k + ++ +++ s+ +nyp Vq + g h ++sprtLnAwVk +eek f eV p f ALseg tp d n mLn POL_SIVSP 97 TEEAKQIVQRHLVVETGTaDKMPATSRPTAPPSGKGGNYP-VQQIGGNYTHLPLSPRTLNAWVKLIEEKKFGAEVVPGFQALSEGCTPYDINQMLN 191 **********988777651578889999************.88899************************************************** PP alig_pr9_edit 192 tVgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtn.nppipVgdiykrwiilgLnkiVrmyspvsILd 286 Vg hqaAmq e IneeAA+wd hp++ gpi+pgq+reprgsdIAgttst eqi+wm pipVg iy+rwi lgL k Vrmy p+ ILd POL_SIVSP 192 CVGEHQAAMQIIREIINEEAADWDLQHPQP-GPIPPGQLREPRGSDIAGTTSTVDEQIQWMYRqQNPIPVGNIYRRWIQLGLQKCVRMYNPTNILD 286 ****************************76.******************************862579***************************** PP alig_pr9_edit 287 IkqgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntataimmq 382 kqgpkepf yVdrfyk LrAeq Vknwmt tlL qnanpdck Lk Lg tleem tAcqgVggp+ kAr AeA + +++ ++ POL_SIVSP 287 VKQGPKEPFQSYVDRFYKSLRAEQTDPAVKNWMTQTLLIQNANPDCKLVLKGLGINPTLEEMLTACQGVGGPGQKARLMAEALKDALTQGP-LPFA 381 ******************************************************************************************7.7888 PP alig_pr9_edit 383 kgnfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanfLgkiwpsskgrp 448 + kgqr+iikc ncgkegh Ar crApr+ gcwkcgk gh m c erqa f + wp k p POL_SIVSP 382 AVQQKGQRKIIKCWNCGKEGHSARQCRAPRRQGCWKCGKAGHVMAKCPERQAGFF-RAWPMGKEAP 446 8999*************************************************96.7899888766 PP >> GAG_HV2RO (P04590) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 693.3 3.1 9.7e-211 9.7e-211 1 462 [. 1 460 [. 1 462 [. 0.95 Alignments for each domain: == domain 1 score: 693.3 bits; conditional E-value: 9.7e-211 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgAr svL+g k d e+irLrpggkkkyrlkh+VwA L rf l +Lle++egc +il l p tgse L+sLfntv v +c+h +vkd GAG_HV2RO 1 MGARNSVLRGKKADELERIRLRPGGKKKYRLKHIVWAANKLDRFGLAESLLESKEGCQKILTVLDPMVPTGSENLKSLFNTVCVIWCIHAEEKVKD 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqk.tqqaaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLn 191 t A ++++ +++ + + + ++ +++ss +nyp Vq g h ++sprtLnAwVk veek f eV p f ALseg tp d n mLn GAG_HV2RO 97 TEGAKQIVRRHLVAETGTAEkMPSTSRPTAPSSEKGGNYP-VQHVGGNYTHIPLSPRTLNAWVKLVEEKKFGAEVVPGFQALSEGCTPYDINQMLN 191 **********9999988765266799**************.999**************************************************** PP alig_pr9_edit 192 tVgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtn.nppipVgdiykrwiilgLnkiVrmyspvsILd 286 Vg hqaAmq e IneeAAewd hp + gp + gq+reprgsdIAgttst eqi+wm p+pVg iy+rwi gL k Vrmy p+ ILd GAG_HV2RO 192 CVGDHQAAMQIIREIINEEAAEWDVQHPIP-GPLPAGQLREPRGSDIAGTTSTVEEQIQWMFRpQNPVPVGNIYRRWIQIGLQKCVRMYNPTNILD 286 ****************************87.******************************863579***************************** PP alig_pr9_edit 287 IkqgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntataimmq 382 Ikqgpkepf yVdrfyk LrAeq Vknwmt tlLVqnanpdck Lk Lg tleem tAcqgVggp+ kAr AeA v +a i ++ GAG_HV2RO 287 IKQGPKEPFQSYVDRFYKSLRAEQTDPAVKNWMTQTLLVQNANPDCKLVLKGLGMNPTLEEMLTACQGVGGPGQKARLMAEALKEVIGPAP-IPFA 381 ******************************************************************************************7.6665 PP alig_pr9_edit 383 kgnfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanfLgkiwpsskgrpgnflq....srpeptApp 462 + qr+ kc ncgkegh Ar crApr+ gcwkcgk gh m +c rqa fLg + k p nf+ ptApp GAG_HV2RO 382 A---AQQRKAFKCWNCGKEGHSARQCRAPRRQGCWKCGKPGHIMTNCPDRQAGFLGLGPWGKK--PRNFPVaqvpQGLTPTAPP 460 4...569*************************************************8755444..6677754244456899999 PP >> GAG_HV2BE (P18095) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 687.8 1.9 4.3e-209 4.3e-209 1 463 [. 1 461 [. 1 463 [. 0.95 Alignments for each domain: == domain 1 score: 687.8 bits; conditional E-value: 4.3e-209 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgAr svL+g k d ek+rLrpggkkkyrlkh+VwA eL +f l +Lle++egc +il+ l p tgse L+sLfntv v +c h +vkd GAG_HV2BE 1 MGARNSVLRGKKADELEKVRLRPGGKKKYRLKHIVWAANELDKFGLAESLLESKEGCQKILRVLDPLVPTGSENLKSLFNTVCVIWCLHAEEKVKD 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqk.tqqaaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLn 191 t eA +++ +++ + + + ++ +++ s+ +nyp Vq a g Vh ++sprtLnAwVk veek f eV p f ALseg tp d n mLn GAG_HV2BE 97 TEEAKKLAQRHLVAETGTAEkMPNTSRPTAPPSGKRGNYP-VQQAGGNYVHVPLSPRTLNAWVKLVEEKKFGAEVVPGFQALSEGCTPYDINQMLN 191 **********9999988765266799**************.899**************************************************** PP alig_pr9_edit 192 tVgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtn.nppipVgdiykrwiilgLnkiVrmyspvsILd 286 Vg hqaAmq e IneeAA+wd hp + gp + gq+r+prgsdIAgttst eqi+wm p+pVg iy+rwi gL k Vr y p+ ILd GAG_HV2BE 192 CVGDHQAAMQIIREIINEEAADWDSQHPIP-GPLPAGQLRDPRGSDIAGTTSTVDEQIQWMYRpQNPVPVGNIYRRWIQIGLQKCVRKYNPTNILD 286 ****************************87.******************************863579***************************** PP alig_pr9_edit 287 IkqgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntataimmq 382 Ikqgpkepf yVdrfyk LrAeq Vknwmt tlL qnanpdck Lk Lg tleem tAcqgVggp+ kAr AeA + + i ++ GAG_HV2BE 287 IKQGPKEPFQSYVDRFYKSLRAEQTDPAVKNWMTQTLLIQNANPDCKLVLKGLGMNPTLEEMLTACQGVGGPGQKARLMAEALKEAMGPSP-IPFA 381 *****************************************************************************************96.6655 PP alig_pr9_edit 383 kgnfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanfLgkiwpsskgrpgnflq....srpeptAppe 463 + qr+ i ncgkegh Ar crApr+ gcwkcgk gh m +c erqa fLg + + p nf+ ptApp+ GAG_HV2BE 382 A---AQQRKAIRYWNCGKEGHSARQCRAPRRQGCWKCGKPGHIMANCPERQAGFLGLGP--RGKKPRNFPVtqapQGLIPTAPPA 461 4...56999999********************************************874..444588998732333468*****7 PP >> Q88015_9PLVG (Q88015) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 686.9 5.2 8.5e-209 8.5e-209 1 463 [. 1 463 [. 1 464 [. 0.96 Alignments for each domain: == domain 1 score: 686.9 bits; conditional E-value: 8.5e-209 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mg r svLsg k d ekirLrp gkkky+lkh VwA eL rf l +Lle +egc +il l p tgse L+sL+ntv v +c+h +vk Q88015_9PLVG 1 MGVRNSVLSGKKADELEKIRLRPNGKKKYMLKHVVWAANELDRFGLAESLLENKEGCQKILSVLAPLVPTGSENLKSLYNTVCVIWCIHAEEKVKH 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqktqq.aaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLn 191 t eA ++++ + + + ++t ++ +++ss+ +nyp Vq + g Vh ++sprtLnAwVk +eek f eV p f ALseg tp d n mLn Q88015_9PLVG 97 TEEAKQIVQRHLVVETGTTETMPkTSRPTAPSSGRGGNYP-VQQIGGNYVHLPLSPRTLNAWVKLIEEKKFGAEVVPGFQALSEGCTPYDINQMLN 191 ********************9776999*************.88899************************************************** PP alig_pr9_edit 192 tVgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtn.nppipVgdiykrwiilgLnkiVrmyspvsILd 286 Vg hqaAmq + IneeAA+wd hp++a gq+rep gsdIAgtts eqi+wm pipVg iy+rwi lgL k Vrmy p+ ILd Q88015_9PLVG 192 CVGDHQAAMQIIRDIINEEAADWDLQHPQPAP--QQGQLREPSGSDIAGTTSSVDEQIQWMYRqQNPIPVGNIYRRWIQLGLQKCVRMYNPTNILD 285 *****************************995..47*************************862579***************************** PP alig_pr9_edit 287 IkqgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntataimmq 382 kqgpkepf yVdrfyk LrAeq Vknwmt tlL qnanpdck Lk Lg tleem tAcqgVggp+ kAr AeA + ++ i ++ Q88015_9PLVG 286 VKQGPKEPFQSYVDRFYKSLRAEQTDAAVKNWMTQTLLIQNANPDCKLVLKGLGVNPTLEEMLTACQGVGGPGQKARLMAEALKEALAPVP-IPFA 380 ******************************************************************************************6.**** PP alig_pr9_edit 383 kgnfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanfLgkiwpsskgrpgnflq....srpeptAppe 463 + +g+r++ikc ncgkegh Ar crApr+ gcwkcgk h m c rqa fLg + k p nf+ ptAppe Q88015_9PLVG 381 AAQQRGPRKPIKCWNCGKEGHSARQCRAPRRQGCWKCGKMDHVMAKCPDRQAGFLGLGPWGKK--PRNFPMaqvhQGLMPTAPPE 463 ********************************************************9855555..66776433546689*****8 PP >> POL_HV2RO (P04584) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 682.7 1.5 1.6e-207 1.6e-207 1 438 [. 1 434 [. 1 444 [. 0.97 Alignments for each domain: == domain 1 score: 682.7 bits; conditional E-value: 1.6e-207 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgAr svL+g k d e+irLrpggkkkyrlkh+VwA L rf l +Lle++egc +il l p tgse L+sLfntv v +c+h +vkd POL_HV2RO 1 MGARNSVLRGKKADELERIRLRPGGKKKYRLKHIVWAANKLDRFGLAESLLESKEGCQKILTVLDPMVPTGSENLKSLFNTVCVIWCIHAEEKVKD 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqk.tqqaaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLn 191 t A ++++ +++ + + + ++ +++ss +nyp Vq g h ++sprtLnAwVk veek f eV p f ALseg tp d n mLn POL_HV2RO 97 TEGAKQIVRRHLVAETGTAEkMPSTSRPTAPSSEKGGNYP-VQHVGGNYTHIPLSPRTLNAWVKLVEEKKFGAEVVPGFQALSEGCTPYDINQMLN 191 **********9999988765266799**************.999**************************************************** PP alig_pr9_edit 192 tVgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtn.nppipVgdiykrwiilgLnkiVrmyspvsILd 286 Vg hqaAmq e IneeAAewd hp + gp + gq+reprgsdIAgttst eqi+wm p+pVg iy+rwi gL k Vrmy p+ ILd POL_HV2RO 192 CVGDHQAAMQIIREIINEEAAEWDVQHPIP-GPLPAGQLREPRGSDIAGTTSTVEEQIQWMFRpQNPVPVGNIYRRWIQIGLQKCVRMYNPTNILD 286 ****************************87.******************************863579***************************** PP alig_pr9_edit 287 IkqgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntataimmq 382 Ikqgpkepf yVdrfyk LrAeq Vknwmt tlLVqnanpdck Lk Lg tleem tAcqgVggp+ kAr AeA v +a i ++ POL_HV2RO 287 IKQGPKEPFQSYVDRFYKSLRAEQTDPAVKNWMTQTLLVQNANPDCKLVLKGLGMNPTLEEMLTACQGVGGPGQKARLMAEALKEVIGPAP-IPFA 381 ******************************************************************************************7.6665 PP alig_pr9_edit 383 kgnfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanfLg 438 + qr+ kc ncgkegh Ar crApr+ gcwkcgk gh m +c rqa fL POL_HV2RO 382 A---AQQRKAFKCWNCGKEGHSARQCRAPRRQGCWKCGKPGHIMTNCPDRQAGFLR 434 4...569***********************************************95 PP >> GAG_HV2UC (Q76633) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 681.7 4.1 3e-207 3e-207 1 462 [. 1 459 [. 1 461 [. 0.93 Alignments for each domain: == domain 1 score: 681.7 bits; conditional E-value: 3e-207 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgAr svLsg k d ek+rLrpggkk+y lkh+ wA eL rf l +Lle++egc +il l p tgse L+sLfntv v yc h +vkd GAG_HV2UC 1 MGARSSVLSGKKTDELEKVRLRPGGKKRYCLKHIIWAVNELDRFGLAESLLESKEGCHKILTVLAPLVPTGSENLKSLFNTVCVIYCLHAEEKVKD 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqktqqaaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLnt 192 t eA +++ + ++ + ++ +++ s +nyp Vq + g Vh ++sprtLnAwVk veek f eV p f ALseg tp d n mLn GAG_HV2UC 97 TEEAKKIAQRHL-AADTEKMP-ATSRPTAPPS--GGNYP-VQQIAGNYVHMPLSPRTLNAWVKLVEEKKFGAEVVPGFQALSEGCTPYDINQMLNC 187 ****98888854.44444444.3455555554..47***.67777*************************************************** PP alig_pr9_edit 193 VgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmt.nnppipVgdiykrwiilgLnkiVrmyspvsILdI 287 Vg hqaAmq e IneeAA+wd hp + gp + gq+r+prgsdIAgttst eqi+wm + p+pVg iy+rwi gL k Vrmy p+ ILdI GAG_HV2UC 188 VGDHQAAMQIIREIINEEAADWDQQHPIP-GPLPAGQLRDPRGSDIAGTTSTVEEQIQWMYrAQNPVPVGNIYRRWIQIGLQKCVRMYNPTNILDI 282 ***************************87.******************************74789******************************* PP alig_pr9_edit 288 kqgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntataimmqk 383 kqgpkepf yVdrfyk LrAeq Vknwmt tlL qnanpdck Lk Lg tleem tAcqg ggp+ kAr AeA + ++a +++ GAG_HV2UC 283 KQGPKEPFQSYVDRFYKSLRAEQTDPAVKNWMTQTLLIQNANPDCKLVLKGLGMNPTLEEMLTACQGIGGPGQKARLMAEALKEALTPAPIPFAAA 378 *****************************************************************************************9889999 PP alig_pr9_edit 384 gnfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanfLgkiwpsskgrpgnflq....srpeptApp 462 + +g r ++ c ncgk gh A+ crApr+ gcwkcgk gh m c erqa fLg + k p nf+ p+App GAG_HV2UC 379 QQKAGKRGTVTCWNCGKVGHTAKQCRAPRRQGCWKCGKQGHIMSKCPERQAGFLGLGPWGKK--PRNFPMtqvpQGVTPSAPP 459 9999***************************************************8744444..7777762122234677777 PP >> A0A1B4WRK1_SIV (A0A1B4WRK1) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 680.9 3.8 5.4e-207 5.4e-207 1 462 [. 1 469 [. 1 471 [. 0.92 Alignments for each domain: == domain 1 score: 680.9 bits; conditional E-value: 5.4e-207 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvk 95 mgA s Lsg kLd ekirLrp gkkkyrlkh+ wA e erf l Llet egc+ i+ l p tgse+L+sLfn+v vLyc+h+ +vk A0A1B4WRK1_SIV 1 MGAGTSALSGRKLDEFEKIRLRPNGKKKYRLKHIIWAGKEMERFGLHEKLLETEEGCKRIIEVLLPLEPTGSEGLKSLFNLVCVLYCIHREQKVK 95 9********************************************************************************************** PP alig_pr9_edit 96 dtkeALdkieekheqnkskqktqq........aaadagnssqvsqnypiVqnaqg.qmVhqaisprtLnAwVkVveekafspeVIpmfsALsegA 181 dt eA ++ + kqk+ + +s + sqnyp q qg Vh ++sprtLnAwVk veek f e pmf ALseg A0A1B4WRK1_SIV 96 DTEEAVVTVKQHC-HLEEKQKSAAappggekkNYNSRETSGGQSQNYPAQQ--QGnAWVHVPLSPRTLNAWVKAVEEKKFGAEIVPMFQALSEGC 187 *******999954.33444443221111111223345667789*****988..55257************************************* PP alig_pr9_edit 182 tpqdlntmLntVgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawm.tnnppipVgdiykrwiilgLnki 275 tp d n mLn g hq+A q ke IneeAA wd hp +agp + gq+r+prgsdIAgtts qeq w t+np + Vg iy+rwiilgL k A0A1B4WRK1_SIV 188 TPYDINQMLNVLGDHQGALQIVKEIINEEAANWDLQHPPPAGPLPAGQLRDPRGSDIAGTTSNVQEQLEWIyTANPRVDVGAIYRRWIILGLQKC 282 **********************************************************************65*********************** PP alig_pr9_edit 276 VrmyspvsILdIkqgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAms 370 V+my pvs LdI+qgpkepf dyVdrfyk rAeq + eVk wmte lL qnanp ck iLk Lg tleem tAcqgVggp kA e m A0A1B4WRK1_SIV 283 VKMYNPVSVLDIRQGPKEPFKDYVDRFYKAIRAEQTSGEVKQWMTESLLIQNANPECKVILKGLGMHPTLEEMLTACQGVGGPQYKAKLMVEMMQ 377 *********************************************************************************************** PP alig_pr9_edit 371 qvqntataimmqkgnfkgqrr.iikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanfLgki.wpsskgrpgnflq....srpept 459 q q ++ m q g +g+ r cfncgk ghl rnc prk c kcgk gh kdc++ q+nfLg + w k p nfl p p+ A0A1B4WRK1_SIV 378 QMQGQN---MVQQGGPRGPPRgNPRCFNCGKFGHLQRNCAEPRKMKCFKCGKIGHMAKDCKG-QVNFLGYGrWMGTK--PRNFLAatpgEEPRPS 466 ******...99*9999998661679***********************************97.******86487776..7799985444567789 PP alig_pr9_edit 460 App 462 App A0A1B4WRK1_SIV 467 APP 469 998 PP >> POL_HV2UC (Q76634) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 672.5 2.8 1.9e-204 1.9e-204 1 437 [. 1 432 [. 1 437 [. 0.95 Alignments for each domain: == domain 1 score: 672.5 bits; conditional E-value: 1.9e-204 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgAr svLsg k d ek+rLrpggkk+y lkh+ wA eL rf l +Lle++egc +il l p tgse L+sLfntv v yc h +vkd POL_HV2UC 1 MGARSSVLSGKKTDELEKVRLRPGGKKRYCLKHIIWAVNELDRFGLAESLLESKEGCHKILTVLAPLVPTGSENLKSLFNTVCVIYCLHAEEKVKD 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqktqqaaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLnt 192 t eA +++ + ++ + ++ +++ s +nyp Vq + g Vh ++sprtLnAwVk veek f eV p f ALseg tp d n mLn POL_HV2UC 97 TEEAKKIAQRHL-AADTEKMP-ATSRPTAPPS--GGNYP-VQQIAGNYVHMPLSPRTLNAWVKLVEEKKFGAEVVPGFQALSEGCTPYDINQMLNC 187 ****98888854.44444444.3455555554..47***.67777*************************************************** PP alig_pr9_edit 193 VgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmt.nnppipVgdiykrwiilgLnkiVrmyspvsILdI 287 Vg hqaAmq e IneeAA+wd hp + gp + gq+r+prgsdIAgttst eqi+wm + p+pVg iy+rwi gL k Vrmy p+ ILdI POL_HV2UC 188 VGDHQAAMQIIREIINEEAADWDQQHPIP-GPLPAGQLRDPRGSDIAGTTSTVEEQIQWMYrAQNPVPVGNIYRRWIQIGLQKCVRMYNPTNILDI 282 ***************************87.******************************74789******************************* PP alig_pr9_edit 288 kqgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntataimmqk 383 kqgpkepf yVdrfyk LrAeq Vknwmt tlL qnanpdck Lk Lg tleem tAcqg ggp+ kAr AeA + ++a +++ POL_HV2UC 283 KQGPKEPFQSYVDRFYKSLRAEQTDPAVKNWMTQTLLIQNANPDCKLVLKGLGMNPTLEEMLTACQGIGGPGQKARLMAEALKEALTPAPIPFAAA 378 *****************************************************************************************9889999 PP alig_pr9_edit 384 gnfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanfL 437 + +g r ++ c ncgk gh A+ crApr+ gcwkcgk gh m c erqa fL POL_HV2UC 379 QQKAGKRGTVTCWNCGKVGHTAKQCRAPRRQGCWKCGKQGHIMSKCPERQAGFL 432 9999*************************************************9 PP >> POL_HV2BE (P18096) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 671.9 0.7 2.8e-204 2.8e-204 1 436 [. 1 432 [. 1 438 [. 0.97 Alignments for each domain: == domain 1 score: 671.9 bits; conditional E-value: 2.8e-204 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgAr svL+g k d ek+rLrpggkkkyrlkh+VwA eL +f l +Lle++egc +il+ l p tgse L+sLfntv v +c h +vkd POL_HV2BE 1 MGARNSVLRGKKADELEKVRLRPGGKKKYRLKHIVWAANELDKFGLAESLLESKEGCQKILRVLDPLVPTGSENLKSLFNTVCVIWCLHAEEKVKD 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieekheqnkskqk.tqqaaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLn 191 t eA +++ +++ + + + ++ +++ s+ +nyp Vq a g Vh ++sprtLnAwVk veek f eV p f ALseg tp d n mLn POL_HV2BE 97 TEEAKKLAQRHLVAETGTAEkMPNTSRPTAPPSGKRGNYP-VQQAGGNYVHVPLSPRTLNAWVKLVEEKKFGAEVVPGFQALSEGCTPYDINQMLN 191 **********9999988765266799**************.899**************************************************** PP alig_pr9_edit 192 tVgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtn.nppipVgdiykrwiilgLnkiVrmyspvsILd 286 Vg hqaAmq e IneeAA+wd hp + gp + gq+r+prgsdIAgttst eqi+wm p+pVg iy+rwi gL k Vr y p+ ILd POL_HV2BE 192 CVGDHQAAMQIIREIINEEAADWDSQHPIP-GPLPAGQLRDPRGSDIAGTTSTVDEQIQWMYRpQNPVPVGNIYRRWIQIGLQKCVRKYNPTNILD 286 ****************************87.******************************863579***************************** PP alig_pr9_edit 287 IkqgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntataimmq 382 Ikqgpkepf yVdrfyk LrAeq Vknwmt tlL qnanpdck Lk Lg tleem tAcqgVggp+ kAr AeA + + i ++ POL_HV2BE 287 IKQGPKEPFQSYVDRFYKSLRAEQTDPAVKNWMTQTLLIQNANPDCKLVLKGLGMNPTLEEMLTACQGVGGPGQKARLMAEALKEAMGPSP-IPFA 381 *****************************************************************************************96.6655 PP alig_pr9_edit 383 kgnfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanf 436 + qr+ i ncgkegh Ar crApr+ gcwkcgk gh m +c erqa f POL_HV2BE 382 A---AQQRKAIRYWNCGKEGHSARQCRAPRRQGCWKCGKPGHIMANCPERQAGF 432 4...56999999****************************************99 PP >> P89903_SIVTA (P89903) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 651.1 4.2 5.6e-198 5.6e-198 1 462 [. 1 469 [. 1 471 [. 0.93 Alignments for each domain: == domain 1 score: 651.1 bits; conditional E-value: 5.6e-198 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgA s Lsg Ld ekirLrp gkkky lkhl wA erf l Llet+egc +i+ l p tgse+L+sLfn+ v +c+h +vkd P89903_SIVTA 1 MGAGHSALSGRNLDTFEKIRLRPNGKKKYQLKHLIWAGKKMERFGLHEKLLETKEGCQKIIEVLSPLEPTGSEGLKSLFNLCCVIWCIHAEQKVKD 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkie.ekheqnkskqk......tqqaaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqd 185 t eA ++ + h +k k+ qq +a++ s+ +nyp Vq q Vh ++sprtLnAwVk veek f e pmf ALseg + d P89903_SIVTA 97 TEEAVVLVKqRCHLVEKEKTAaapsggQQQNYNTAATPSGRHGNYPVVQQ-NNQWVHTPLSPRTLNAWVKTVEEKRFGAEIVPMFQALSEGCLSYD 191 ****765541446777777766677756779999999***********96.4699***************************************** PP alig_pr9_edit 186 lntmLntVgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtn.nppipVgdiykrwiilgLnkiVrmys 280 n mLn g hq+Amq ke+In eAA wd +hp +agp + gq+r+prgsdIAgtts +eqi w+ n np + Vg iy+ w+ilgL k V+my P89903_SIVTA 192 INQMLNVIGDHQGAMQIIKEVINDEAAQWDITHPPPAGPLPAGQLRDPRGSDIAGTTSSVAEQIEWTFNaNPRVDVGRIYRGWVILGLQKCVKMYN 287 ******************************************************************97549************************* PP alig_pr9_edit 281 pvsILdIkqgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqnta 376 p s LdI+qg kepf dyVdrfy LrAeq q+VknwmtetlL qnanpdck Lk Lg tleem tAcqgVggp+hkA eAm q q + P89903_SIVTA 288 PISVLDIRQGAKEPFKDYVDRFYQALRAEQTPQDVKNWMTETLLIQNANPDCKLVLKGLGIHPTLEEMLTACQGVGGPGHKAKLMVEAMQQMQGVN 383 **********************************************************************************************99 PP alig_pr9_edit 377 taimmqkgnfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanfLgkiwpsskgrpgnfl.qsrpeptApp 462 + +g r + cf cg gh+ + c c kcgk gh kdc++ qanfLg+ p p nfl q ptApp P89903_SIVTA 384 MVQGAPRGGRGRGRGPPRCFKCGQIGHIQKDCPRAGPNKCLKCGKPGHLAKDCRSGQANFLGRM-PTWGTKPRNFLeQGGAVPTAPP 469 644444443333344555**************6666677***********************95.888899****967999*****9 PP >> Q8Q7J5_SIV (Q8Q7J5) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 645.8 2.0 2.2e-196 2.2e-196 1 462 [. 1 464 [. 1 466 [. 0.92 Alignments for each domain: == domain 1 score: 645.8 bits; conditional E-value: 2.2e-196 alig_pr9_edit 1 mgArAsvLsggkLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkd 96 mgA As L+g kLd ekirLrp gkkky lkh+ w s eL rf l Lle++egc +il l p tgse L+sL+nt +cvh k +v d Q8Q7J5_SIV 1 MGASASGLRGEKLDELEKIRLRPSGKKKYQLKHIIWVSKELDRFGLHEKLLESKEGCEKILSVLFPLVPTGSENLISLYNTCCCVWCVHAKEKVTD 96 9*********************************************************************************************** PP alig_pr9_edit 97 tkeALdkieek.h.eqnkskqktqq.aaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntm 189 t eA +k++ k h +++k + + + + s+ s nypi q Vhq isprtLnAwVk +eek fspe pmf ALseg +p dln m Q8Q7J5_SIV 97 TEEAKEKVKQKlHlVAEKE-NAASEkEQRAIVTPSGRSKNYPIQIINQ-TPVHQGISPRTLNAWVKCIEEKKFSPEIVPMFIALSEGCLPYDLNGM 190 *******998522122222.2222212234455699*******77666.58********************************************* PP alig_pr9_edit 190 LntVgghqaAmqmLketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtnn.ppipVgdiykrwiilgLnkiVrmyspvsI 284 Ln+ g hq+A q k++IneeAA+w hp ++gp + g +r p gsdIAgtts + eqi w+t + Vg iyk wi+lgL k V my pv I Q8Q7J5_SIV 191 LNAIGDHQGALQIVKDVINEEAADWNLRHP-QVGPMPQGVLRNPTGSDIAGTTSSIEEQIEWTTREqDAVNVGGIYKQWIVLGLQKCVSMYNPVNI 285 ******************************.58*******************************85268*************************** PP alig_pr9_edit 285 LdIkqgpkepfrdyVdrfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntataim 380 LdIkqgpkepf dyVdrfyk LrAe Vk wmt tlL qnanpdck+iLk Lg +leem AcqgVggp kA AeAm +q + +m Q8Q7J5_SIV 286 LDIKQGPKEPFKDYVDRFYKALRAERTDPQVKTWMTQTLLIQNANPDCKSILKGLGMNPSLEEMPLACQGVGGPKYKAQMMAEAMKEAQSA---VM 378 ***************************************************************************************9965...59 PP alig_pr9_edit 381 mq......kgnfkgqrriikcfncgkeghlArncrAprkkgcwkcgkeghqmkdcterqanfLgkiwpsskgrpgnflqsrpeptApp 462 mq +g + + r i c ncgk gh r c prkkgc kcg gh m++c +nfLg p +g p nf+ ptApp Q8Q7J5_SIV 379 MQnsggppRGPPRQPPRNIRCPNCGKFGHGLRDCISPRKKGCFKCGDLGHIMRNCPK-MVNFLGN-TPWGSGKPRNFPAMPLTPTAPP 464 **4444444555667899*************************************85.79****7.5778899**************9 PP >> B7UES0_SIV (B7UES0) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 467.3 13.3 2.1e-142 2.1e-142 12 460 .. 12 444 .. 1 449 [. 0.91 Alignments for each domain: == domain 1 score: 467.3 bits; conditional E-value: 2.1e-142 alig_pr9_edit 12 kLdawekirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkdtkeALdkieek 107 L + e++rLr gkk yr h wA eL ++p+ l t+egc+ i l p g+ L+sL n v c + +v++t eA +++ B7UES0_SIV 12 LLKKLERVRLRETGKKCYRRAHVKWAVQELKHLCIDPDDLGTKEGCKRIVEKLLPLEEGGTQKLKSLLNICIVILCLQEGLPVRNTIEAKKRVKV- 106 68899************************************************************************************988888. PP alig_pr9_edit 108 heqnkskqktqqaaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLntVgghqaAmqmL 203 k k++ q pi naqg h ++ rtL wVk e f e p fsA eg +p nt Ln Vg q+Amq+L B7UES0_SIV 107 ----KEKKEEQL-------------AMPIIRNAQGIFEHVPLATRTLQSWVKALEDRGFKSEIVPLFSAFAEGLLPEEINTLLNVVGDYQGAMQVL 185 ....55555544.............36********************************************************************* PP alig_pr9_edit 204 ketIneeAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtnnppipVgdiykrwiilgLnkiVrmyspvsILdIkqgpkepfrdyV 299 ke IneeA e dr hp++ gp + gq+ pr sdI gtts lq q aw n i Vg ykrw+i gL k V+myspv LdI+qg kepf dyV B7UES0_SIV 186 KEAINEEAEEYDRQHPQPIGPLPVGQIPPPRASDIVGTTSNLQQQLAWV--NAGIDVGALYKRWVIIGLQKLVKMYSPVTVLDIRQGAKEPFSDYV 279 ************************************************6..889****************************************** PP alig_pr9_edit 300 drfyktLrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntataimmqkgnfkgqrriikc 395 drf+k LrAeq +qeVk wmte lL qnanpdck LkAL +leem tAcqgVggp+ kArvLAeA vq + g + q r c B7UES0_SIV 280 DRFFKALRAEQGSQEVKTWMTEKLLIQNANPDCKGVLKALVK-PSLEEMLTACQGVGGPGYKARVLAEALRPVQMVQQ--RPAPGGGPQQGR-LRC 371 ****************************************75.69*************************99998773..445566666666.78* PP alig_pr9_edit 396 fncgkeghlArncrAprkkgcwkcgkeghqmkdcte...rq...anfLgkiwpsskgrpgnflqsrpe....ptA 460 ncg gh nc c kcgk gh k+c+ q +nfLgk w k p q r+e p+A B7UES0_SIV 372 YNCGRFGHTKNNCSQK-GPTCYKCGKPGHIAKNCRVggqQQqskVNFLGK-WRGGKAEPPLNMQQRTEmdifPSA 444 *************753.346**************98875224558****9.999999998889999984444555 PP >> B3CKG7_SIV (B3CKG7) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 459.4 10.4 5.2e-140 5.2e-140 18 440 .. 19 428 .. 16 439 .. 0.92 Alignments for each domain: == domain 1 score: 459.4 bits; conditional E-value: 5.2e-140 alig_pr9_edit 18 kirLrpggkkkyrlkhlVwAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavLycvhqkidvkdtkeALdkieekheqnks 113 ++rLr kk y+ khlVw eLe+ l+ L + eg +++ + p gs+ rs + vL c ++i+v dt+ A kie B3CKG7_SIV 19 RVRLRKDSKKTYKRKHLVWLVKELEKLCLDGKLISSQEGVKKLCEHIAPLVPEGSKTIRSIWGMISVLACLYNNIQVSDTQAAIKKIEV------- 107 589************************************************************************************99....... PP alig_pr9_edit 114 kqktqqaaadagnssqvsqnypiVqnaqgqmVhqaisprtLnAwVkVveekafspeVIpmfsALsegAtpqdlntmLntVgghqaAmqmLketIne 209 +++ ++s n p qg ++sprt wVk +e f e p fsAL A+ d nt Ln g hqaAmq ke ne B3CKG7_SIV 108 --RPRE--------EKASVNMPVLRGPQGPQ-WEPLSPRTIQTWVKHIEDRGFGAECVPFFSALTDRALTHDINTLLNNIGDHQAAMQIVKEIVNE 192 ..2333........34599**********75.57************************************************************** PP alig_pr9_edit 210 eAAewdrlhpvhagpiapgqmreprgsdIAgttstlqeqiawmtnnppipVgdiykrwiilgLnkiVrmyspvsILdIkqgpkepfrdyVdrfykt 305 e ewdr+hp ++gp +pg mr p gsdIAg tst e aw ppi g iykrwii gL k+V y p+sILdIkqgpke f yVdrf+k B3CKG7_SIV 193 EITEWDRTHPPPVGPLPPGAMRNPTGSDIAGVTSTMEEELAWLAQQPPIDIGAIYKRWIIRGLQKVVQIYVPTSILDIKQGPKEDFKSYVDRFFKV 288 ************************************************************************************************ PP alig_pr9_edit 306 LrAeqAtqeVknwmtetlLVqnanpdcktiLkALgpgAtleemmtAcqgVggpshkArvLAeAmsqvqntataimmqkgnfkgqrriikcfncgke 401 LrAeq eVk wmt+ lL qnanpdck+iLk L tleem tAcqgVggp+ k A A + + a q +g+ r cfncg B3CKG7_SIV 289 LRAEQGVPEVKQWMTDKLLIQNANPDCKQILKGLQ-SPTLEEMLTACQGVGGPGYKSKIMAQALQEALSQSQAMVQQQAVKRGPLR---CFNCGQI 380 ********************************995.68*****************9766665554444444333357778889998...******* PP alig_pr9_edit 402 ghlArncrAprkk.......gcwkcgkeghqmkdcte..rqanfLgki 440 gh A+ c+ p + cw cgk gh k+c e rq+nfLg + B3CKG7_SIV 381 GHMAKDCKKPKRSpqqrgppTCWGCGKTGHIQKNCPEtrRQVNFLGNG 428 *********988544443446**************8888******964 PP >> A0A163J913_ABSGL (A0A163J913) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 9.6 0.0 0.00055 0.00055 68 99 .. 822 853 .. 808 867 .. 0.84 Alignments for each domain: == domain 1 score: 9.6 bits; conditional E-value: 0.00055 alig_pr9_edit 68 lqtgseeLrsLfntvavLycvhqkidvkdtke 99 qtg e+L+sLf + Ly+ h+ + + t A0A163J913_ABSGL 822 FQTGNEGLKSLFSKLSSLYYNHSEVSAQETAY 853 69********************9887777765 PP >> A0A4Y7LBT4_PAPSO (A0A4Y7LBT4) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 9.0 0.0 0.00082 0.00082 36 88 .. 53 106 .. 40 161 .. 0.84 Alignments for each domain: == domain 1 score: 9.0 bits; conditional E-value: 0.00082 alig_pr9_edit 36 wAsreLerfAlnpgLletsegcrqilgqlqpalqtgseeLrsLfntvavL.ycv 88 A Le Al p L ts c+ i++ l l g r + ++av y v A0A4Y7LBT4_PAPSO 53 QATKKLEHLALFPLLIGTSTDCKIIMNVLWTGLADGGSNWRNVYKALAVMeYLV 106 67788********************************9*******999963545 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (465 nodes) Target sequences: 68 (62119 residues searched) Passed MSV filter: 68 (1); expected 1.4 (0.02) Passed bias filter: 68 (1); expected 1.4 (0.02) Passed Vit filter: 68 (1); expected 0.1 (0.001) Passed Fwd filter: 68 (1); expected 0.0 (1e-05) Initial search space (Z): 68 [actual number of targets] Domain search space (domZ): 68 [number of targets reported over threshold] # CPU time: 0.30u 0.01s 00:00:00.31 Elapsed: 00:00:00.31 # Mc/sec: 90.84 // [ok]