Database and Motifs | High-scoring Motif Occurences | Debugging Information | Results in TSV Format | Results in GFF3 Format | Best Site per Sequence |
FIMO version 5.5.5, (Release date: Thu Sep 14 08:48:04 2023 +1000)
For further information on how to interpret these results please access https://meme-suite.org/meme/doc/fimo-output-format.html.
To get a copy of the FIMO software please access https://meme-suite.org
If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble,
"FIMO: Scanning for occurrences of a given motif",
Bioinformatics, 27(7):1017-1018, 2011.
[full text]
DATABASE test.fasta
Database contains 2040 sequences, 40800 residues
MOTIFS motifs.meme (DNA)
MOTIF | WIDTH | BEST POSSIBLE MATCH |
---|---|---|
RAGGAGGY | 8 | AAGGAGGT |
Random model letter frequencies (--nrdb--):
A 0.275 C 0.225 G 0.225 T 0.275
Motif ID | Alt ID | Sequence Name | Strand | Start | End | p-value | q-value | Matched Sequence |
---|---|---|---|---|---|---|---|---|
RAGGAGGY | MEME-1 | 1013 | + | 2 | 9 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 1966 | + | 3 | 10 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 1715 | + | 4 | 11 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 919 | + | 4 | 11 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 1123 | + | 4 | 11 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 810 | + | 5 | 12 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 1314 | + | 6 | 13 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 649 | + | 6 | 13 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 1783 | + | 6 | 13 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 1394 | + | 6 | 13 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 985 | + | 7 | 14 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 1658 | + | 7 | 14 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 1462 | + | 7 | 14 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 1218 | + | 7 | 14 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 142 | + | 7 | 14 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 771 | + | 7 | 14 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 501 | + | 7 | 14 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 1556 | + | 7 | 14 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 1354 | + | 7 | 14 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 1634 | + | 7 | 14 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 788 | + | 7 | 14 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 1822 | + | 7 | 14 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 789 | + | 7 | 14 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 1832 | + | 7 | 14 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 1366 | + | 7 | 14 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 1712 | + | 7 | 14 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 368 | + | 7 | 14 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 1352 | + | 8 | 15 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 1750 | + | 8 | 15 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 1317 | + | 8 | 15 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 139 | + | 8 | 15 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 172 | + | 8 | 15 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 522 | + | 8 | 15 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 1319 | + | 8 | 15 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 1911 | + | 8 | 15 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 1180 | + | 8 | 15 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 128 | + | 8 | 15 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 765 | + | 8 | 15 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 691 | + | 8 | 15 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 692 | + | 8 | 15 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 947 | + | 8 | 15 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 693 | + | 8 | 15 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 1136 | + | 8 | 15 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 1644 | + | 8 | 15 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 24 | + | 8 | 15 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 841 | + | 8 | 15 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 822 | + | 8 | 15 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 123 | + | 8 | 15 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 215 | + | 8 | 15 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 816 | + | 8 | 15 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 915 | + | 9 | 16 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 432 | + | 9 | 16 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 1380 | + | 9 | 16 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 894 | + | 9 | 16 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 907 | + | 9 | 16 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 1518 | + | 9 | 16 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 1056 | + | 9 | 16 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 1858 | + | 9 | 16 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 1464 | + | 9 | 16 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 1046 | + | 10 | 17 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 473 | + | 10 | 17 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 89 | + | 10 | 17 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 1698 | + | 10 | 17 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 1313 | + | 10 | 17 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 72 | + | 10 | 17 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 744 | + | 10 | 17 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 1599 | + | 10 | 17 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 1013 | + | 10 | 17 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 64 | + | 11 | 18 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 1649 | - | 8 | 15 | 1.47e-05 | 0.00935 | AAGGAGGT |
RAGGAGGY | MEME-1 | 1749 | + | 5 | 12 | 2.67e-05 | 0.0105 | AAGGAGGC |
RAGGAGGY | MEME-1 | 511 | + | 6 | 13 | 2.67e-05 | 0.0105 | AAGGAGGC |
RAGGAGGY | MEME-1 | 987 | + | 6 | 13 | 2.67e-05 | 0.0105 | AAGGAGGC |
RAGGAGGY | MEME-1 | 1928 | + | 7 | 14 | 2.67e-05 | 0.0105 | AAGGAGGC |
RAGGAGGY | MEME-1 | 31 | + | 7 | 14 | 2.67e-05 | 0.0105 | AAGGAGGC |
RAGGAGGY | MEME-1 | 1245 | + | 7 | 14 | 2.67e-05 | 0.0105 | AAGGAGGC |
RAGGAGGY | MEME-1 | 1457 | + | 7 | 14 | 2.67e-05 | 0.0105 | AAGGAGGC |
RAGGAGGY | MEME-1 | 746 | + | 8 | 15 | 2.67e-05 | 0.0105 | AAGGAGGC |
RAGGAGGY | MEME-1 | 1474 | + | 8 | 15 | 2.67e-05 | 0.0105 | AAGGAGGC |
RAGGAGGY | MEME-1 | 1255 | + | 8 | 15 | 2.67e-05 | 0.0105 | AAGGAGGC |
RAGGAGGY | MEME-1 | 1188 | + | 8 | 15 | 2.67e-05 | 0.0105 | AAGGAGGC |
RAGGAGGY | MEME-1 | 1328 | + | 8 | 15 | 2.67e-05 | 0.0105 | AAGGAGGC |
RAGGAGGY | MEME-1 | 823 | + | 8 | 15 | 2.67e-05 | 0.0105 | AAGGAGGC |
RAGGAGGY | MEME-1 | 1975 | + | 8 | 15 | 2.67e-05 | 0.0105 | AAGGAGGC |
RAGGAGGY | MEME-1 | 208 | + | 8 | 15 | 2.67e-05 | 0.0105 | AAGGAGGC |
RAGGAGGY | MEME-1 | 96 | + | 8 | 15 | 2.67e-05 | 0.0105 | AAGGAGGC |
RAGGAGGY | MEME-1 | 1782 | + | 9 | 16 | 2.67e-05 | 0.0105 | AAGGAGGC |
RAGGAGGY | MEME-1 | 1734 | + | 9 | 16 | 2.67e-05 | 0.0105 | AAGGAGGC |
RAGGAGGY | MEME-1 | 905 | + | 9 | 16 | 2.67e-05 | 0.0105 | AAGGAGGC |
RAGGAGGY | MEME-1 | 509 | + | 9 | 16 | 2.67e-05 | 0.0105 | AAGGAGGC |
RAGGAGGY | MEME-1 | 839 | + | 9 | 16 | 2.67e-05 | 0.0105 | AAGGAGGC |
RAGGAGGY | MEME-1 | 1429 | + | 9 | 16 | 2.67e-05 | 0.0105 | AAGGAGGC |
RAGGAGGY | MEME-1 | 927 | + | 9 | 16 | 2.67e-05 | 0.0105 | AAGGAGGC |
RAGGAGGY | MEME-1 | 852 | + | 9 | 16 | 2.67e-05 | 0.0105 | AAGGAGGC |
RAGGAGGY | MEME-1 | 1088 | + | 9 | 16 | 2.67e-05 | 0.0105 | AAGGAGGC |
RAGGAGGY | MEME-1 | 1843 | + | 10 | 17 | 2.67e-05 | 0.0105 | AAGGAGGC |
RAGGAGGY | MEME-1 | 1775 | + | 10 | 17 | 2.67e-05 | 0.0105 | AAGGAGGC |
RAGGAGGY | MEME-1 | 1676 | + | 10 | 17 | 2.67e-05 | 0.0105 | AAGGAGGC |
RAGGAGGY | MEME-1 | 1216 | + | 10 | 17 | 2.67e-05 | 0.0105 | AAGGAGGC |
RAGGAGGY | MEME-1 | 240 | + | 10 | 17 | 2.67e-05 | 0.0105 | AAGGAGGC |
RAGGAGGY | MEME-1 | 1348 | + | 10 | 17 | 2.67e-05 | 0.0105 | AAGGAGGC |
RAGGAGGY | MEME-1 | 1329 | + | 10 | 17 | 2.67e-05 | 0.0105 | AAGGAGGC |
RAGGAGGY | MEME-1 | 1439 | + | 10 | 17 | 2.67e-05 | 0.0105 | AAGGAGGC |
RAGGAGGY | MEME-1 | 751 | + | 10 | 17 | 2.67e-05 | 0.0105 | AAGGAGGC |
RAGGAGGY | MEME-1 | 1043 | + | 10 | 17 | 2.67e-05 | 0.0105 | AAGGAGGC |
RAGGAGGY | MEME-1 | 331 | + | 10 | 17 | 2.67e-05 | 0.0105 | AAGGAGGC |
RAGGAGGY | MEME-1 | 105 | + | 10 | 17 | 2.67e-05 | 0.0105 | AAGGAGGC |
RAGGAGGY | MEME-1 | 2016 | + | 11 | 18 | 2.67e-05 | 0.0105 | AAGGAGGC |
RAGGAGGY | MEME-1 | 415 | + | 11 | 18 | 2.67e-05 | 0.0105 | AAGGAGGC |
RAGGAGGY | MEME-1 | 375 | - | 4 | 11 | 2.67e-05 | 0.0105 | AAGGAGGC |
RAGGAGGY | MEME-1 | 334 | + | 11 | 18 | 2.67e-05 | 0.0105 | AAGGAGGC |
RAGGAGGY | MEME-1 | 1709 | + | 12 | 19 | 2.67e-05 | 0.0105 | AAGGAGGC |
RAGGAGGY | MEME-1 | 857 | + | 12 | 19 | 2.67e-05 | 0.0105 | AAGGAGGC |
RAGGAGGY | MEME-1 | 1812 | - | 8 | 15 | 2.67e-05 | 0.0105 | AAGGAGGC |
RAGGAGGY | MEME-1 | 685 | + | 1 | 8 | 3.88e-05 | 0.0106 | GAGGAGGT |
RAGGAGGY | MEME-1 | 1433 | + | 1 | 8 | 3.88e-05 | 0.0106 | GAGGAGGT |
RAGGAGGY | MEME-1 | 1018 | + | 1 | 8 | 3.88e-05 | 0.0106 | GAGGAGGT |
RAGGAGGY | MEME-1 | 1546 | + | 5 | 12 | 3.88e-05 | 0.0106 | GAGGAGGT |
RAGGAGGY | MEME-1 | 1838 | + | 5 | 12 | 3.88e-05 | 0.0106 | GAGGAGGT |
RAGGAGGY | MEME-1 | 1903 | + | 5 | 12 | 3.88e-05 | 0.0106 | GAGGAGGT |
RAGGAGGY | MEME-1 | 2007 | + | 5 | 12 | 3.88e-05 | 0.0106 | GAGGAGGT |
RAGGAGGY | MEME-1 | 664 | + | 5 | 12 | 3.88e-05 | 0.0106 | GAGGAGGT |
RAGGAGGY | MEME-1 | 2037 | + | 5 | 12 | 3.88e-05 | 0.0106 | GAGGAGGT |
RAGGAGGY | MEME-1 | 1083 | + | 6 | 13 | 3.88e-05 | 0.0106 | GAGGAGGT |
RAGGAGGY | MEME-1 | 1008 | + | 7 | 14 | 3.88e-05 | 0.0106 | GAGGAGGT |
RAGGAGGY | MEME-1 | 902 | + | 7 | 14 | 3.88e-05 | 0.0106 | GAGGAGGT |
RAGGAGGY | MEME-1 | 1799 | + | 7 | 14 | 3.88e-05 | 0.0106 | GAGGAGGT |
RAGGAGGY | MEME-1 | 831 | + | 7 | 14 | 3.88e-05 | 0.0106 | GAGGAGGT |
RAGGAGGY | MEME-1 | 1228 | + | 7 | 14 | 3.88e-05 | 0.0106 | GAGGAGGT |
RAGGAGGY | MEME-1 | 749 | + | 7 | 14 | 3.88e-05 | 0.0106 | GAGGAGGT |
RAGGAGGY | MEME-1 | 1142 | + | 7 | 14 | 3.88e-05 | 0.0106 | GAGGAGGT |
RAGGAGGY | MEME-1 | 1910 | + | 8 | 15 | 3.88e-05 | 0.0106 | GAGGAGGT |
RAGGAGGY | MEME-1 | 1898 | + | 8 | 15 | 3.88e-05 | 0.0106 | GAGGAGGT |
RAGGAGGY | MEME-1 | 1655 | + | 8 | 15 | 3.88e-05 | 0.0106 | GAGGAGGT |
RAGGAGGY | MEME-1 | 1568 | + | 8 | 15 | 3.88e-05 | 0.0106 | GAGGAGGT |
RAGGAGGY | MEME-1 | 849 | + | 8 | 15 | 3.88e-05 | 0.0106 | GAGGAGGT |
RAGGAGGY | MEME-1 | 891 | + | 8 | 15 | 3.88e-05 | 0.0106 | GAGGAGGT |
RAGGAGGY | MEME-1 | 210 | + | 8 | 15 | 3.88e-05 | 0.0106 | GAGGAGGT |
RAGGAGGY | MEME-1 | 824 | + | 8 | 15 | 3.88e-05 | 0.0106 | GAGGAGGT |
RAGGAGGY | MEME-1 | 1361 | + | 8 | 15 | 3.88e-05 | 0.0106 | GAGGAGGT |
RAGGAGGY | MEME-1 | 1820 | + | 8 | 15 | 3.88e-05 | 0.0106 | GAGGAGGT |
RAGGAGGY | MEME-1 | 770 | + | 8 | 15 | 3.88e-05 | 0.0106 | GAGGAGGT |
RAGGAGGY | MEME-1 | 1148 | + | 8 | 15 | 3.88e-05 | 0.0106 | GAGGAGGT |
RAGGAGGY | MEME-1 | 167 | + | 8 | 15 | 3.88e-05 | 0.0106 | GAGGAGGT |
RAGGAGGY | MEME-1 | 1038 | + | 8 | 15 | 3.88e-05 | 0.0106 | GAGGAGGT |
RAGGAGGY | MEME-1 | 1036 | + | 8 | 15 | 3.88e-05 | 0.0106 | GAGGAGGT |
RAGGAGGY | MEME-1 | 694 | + | 8 | 15 | 3.88e-05 | 0.0106 | GAGGAGGT |
RAGGAGGY | MEME-1 | 1859 | + | 9 | 16 | 3.88e-05 | 0.0106 | GAGGAGGT |
RAGGAGGY | MEME-1 | 1598 | + | 9 | 16 | 3.88e-05 | 0.0106 | GAGGAGGT |
RAGGAGGY | MEME-1 | 515 | + | 9 | 16 | 3.88e-05 | 0.0106 | GAGGAGGT |
RAGGAGGY | MEME-1 | 510 | + | 9 | 16 | 3.88e-05 | 0.0106 | GAGGAGGT |
RAGGAGGY | MEME-1 | 1478 | + | 9 | 16 | 3.88e-05 | 0.0106 | GAGGAGGT |
RAGGAGGY | MEME-1 | 225 | + | 9 | 16 | 3.88e-05 | 0.0106 | GAGGAGGT |
RAGGAGGY | MEME-1 | 781 | + | 9 | 16 | 3.88e-05 | 0.0106 | GAGGAGGT |
RAGGAGGY | MEME-1 | 700 | + | 9 | 16 | 3.88e-05 | 0.0106 | GAGGAGGT |
RAGGAGGY | MEME-1 | 1945 | + | 10 | 17 | 3.88e-05 | 0.0106 | GAGGAGGT |
RAGGAGGY | MEME-1 | 1774 | + | 10 | 17 | 3.88e-05 | 0.0106 | GAGGAGGT |
RAGGAGGY | MEME-1 | 1711 | + | 10 | 17 | 3.88e-05 | 0.0106 | GAGGAGGT |
RAGGAGGY | MEME-1 | 1021 | + | 10 | 17 | 3.88e-05 | 0.0106 | GAGGAGGT |
RAGGAGGY | MEME-1 | 1569 | + | 11 | 18 | 3.88e-05 | 0.0106 | GAGGAGGT |
RAGGAGGY | MEME-1 | 787 | + | 11 | 18 | 3.88e-05 | 0.0106 | GAGGAGGT |
RAGGAGGY | MEME-1 | 1661 | - | 6 | 13 | 3.88e-05 | 0.0106 | GAGGAGGT |
RAGGAGGY | MEME-1 | 1107 | + | 13 | 20 | 3.88e-05 | 0.0106 | GAGGAGGT |
RAGGAGGY | MEME-1 | 1608 | + | 1 | 8 | 4.87e-05 | 0.0109 | GAGGAGGC |
RAGGAGGY | MEME-1 | 1800 | + | 4 | 11 | 4.87e-05 | 0.0109 | GAGGAGGC |
RAGGAGGY | MEME-1 | 293 | + | 5 | 12 | 4.87e-05 | 0.0109 | GAGGAGGC |
RAGGAGGY | MEME-1 | 928 | + | 7 | 14 | 4.87e-05 | 0.0109 | GAGGAGGC |
RAGGAGGY | MEME-1 | 229 | + | 7 | 14 | 4.87e-05 | 0.0109 | GAGGAGGC |
RAGGAGGY | MEME-1 | 859 | + | 7 | 14 | 4.87e-05 | 0.0109 | GAGGAGGC |
RAGGAGGY | MEME-1 | 608 | + | 8 | 15 | 4.87e-05 | 0.0109 | GAGGAGGC |
RAGGAGGY | MEME-1 | 1579 | + | 8 | 15 | 4.87e-05 | 0.0109 | GAGGAGGC |
RAGGAGGY | MEME-1 | 992 | + | 9 | 16 | 4.87e-05 | 0.0109 | GAGGAGGC |
RAGGAGGY | MEME-1 | 1908 | + | 9 | 16 | 4.87e-05 | 0.0109 | GAGGAGGC |
RAGGAGGY | MEME-1 | 1667 | + | 9 | 16 | 4.87e-05 | 0.0109 | GAGGAGGC |
RAGGAGGY | MEME-1 | 360 | + | 9 | 16 | 4.87e-05 | 0.0109 | GAGGAGGC |
RAGGAGGY | MEME-1 | 316 | + | 10 | 17 | 4.87e-05 | 0.0109 | GAGGAGGC |
RAGGAGGY | MEME-1 | 164 | + | 10 | 17 | 4.87e-05 | 0.0109 | GAGGAGGC |
RAGGAGGY | MEME-1 | 1656 | + | 10 | 17 | 4.87e-05 | 0.0109 | GAGGAGGC |
RAGGAGGY | MEME-1 | 792 | + | 10 | 17 | 4.87e-05 | 0.0109 | GAGGAGGC |
RAGGAGGY | MEME-1 | 1315 | + | 10 | 17 | 4.87e-05 | 0.0109 | GAGGAGGC |
RAGGAGGY | MEME-1 | 217 | + | 10 | 17 | 4.87e-05 | 0.0109 | GAGGAGGC |
RAGGAGGY | MEME-1 | 1311 | + | 10 | 17 | 4.87e-05 | 0.0109 | GAGGAGGC |
RAGGAGGY | MEME-1 | 1254 | + | 10 | 17 | 4.87e-05 | 0.0109 | GAGGAGGC |
RAGGAGGY | MEME-1 | 1187 | + | 10 | 17 | 4.87e-05 | 0.0109 | GAGGAGGC |
RAGGAGGY | MEME-1 | 1118 | + | 10 | 17 | 4.87e-05 | 0.0109 | GAGGAGGC |
RAGGAGGY | MEME-1 | 1031 | + | 10 | 17 | 4.87e-05 | 0.0109 | GAGGAGGC |
RAGGAGGY | MEME-1 | 1018 | + | 10 | 17 | 4.87e-05 | 0.0109 | GAGGAGGC |
RAGGAGGY | MEME-1 | 1773 | + | 11 | 18 | 4.87e-05 | 0.0109 | GAGGAGGC |
RAGGAGGY | MEME-1 | 1017 | + | 11 | 18 | 4.87e-05 | 0.0109 | GAGGAGGC |
RAGGAGGY | MEME-1 | 940 | + | 12 | 19 | 4.87e-05 | 0.0109 | GAGGAGGC |
RAGGAGGY | MEME-1 | 840 | + | 12 | 19 | 4.87e-05 | 0.0109 | GAGGAGGC |
RAGGAGGY | MEME-1 | 327 | + | 13 | 20 | 4.87e-05 | 0.0109 | GAGGAGGC |
RAGGAGGY | MEME-1 | 933 | + | 13 | 20 | 4.87e-05 | 0.0109 | GAGGAGGC |
RAGGAGGY | MEME-1 | 853 | + | 13 | 20 | 4.87e-05 | 0.0109 | GAGGAGGC |
RAGGAGGY | MEME-1 | 1537 | + | 13 | 20 | 4.87e-05 | 0.0109 | GAGGAGGC |
RAGGAGGY | MEME-1 | 1475 | + | 13 | 20 | 4.87e-05 | 0.0109 | GAGGAGGC |
RAGGAGGY | MEME-1 | 1156 | + | 13 | 20 | 4.87e-05 | 0.0109 | GAGGAGGC |
RAGGAGGY | MEME-1 | 1048 | - | 10 | 17 | 4.87e-05 | 0.0109 | GAGGAGGC |
RAGGAGGY | MEME-1 | 1381 | - | 13 | 20 | 4.87e-05 | 0.0109 | GAGGAGGC |
RAGGAGGY | MEME-1 | 189 | + | 6 | 13 | 6.34e-05 | 0.0138 | ATGGAGGT |
RAGGAGGY | MEME-1 | 336 | + | 7 | 14 | 6.34e-05 | 0.0138 | ATGGAGGT |
RAGGAGGY | MEME-1 | 1831 | + | 8 | 15 | 6.34e-05 | 0.0138 | ATGGAGGT |
RAGGAGGY | MEME-1 | 162 | + | 8 | 15 | 6.34e-05 | 0.0138 | ATGGAGGT |
RAGGAGGY | MEME-1 | 349 | + | 8 | 15 | 6.34e-05 | 0.0138 | ATGGAGGT |
RAGGAGGY | MEME-1 | 1417 | + | 9 | 16 | 6.34e-05 | 0.0138 | ATGGAGGT |
RAGGAGGY | MEME-1 | 296 | + | 1 | 8 | 7.54e-05 | 0.014 | AAGGAGGG |
RAGGAGGY | MEME-1 | 1260 | + | 5 | 12 | 7.54e-05 | 0.014 | AAGGAGGG |
RAGGAGGY | MEME-1 | 25 | + | 6 | 13 | 7.54e-05 | 0.014 | AAGGAGGG |
RAGGAGGY | MEME-1 | 558 | + | 7 | 14 | 7.54e-05 | 0.014 | AAGGAGGG |
RAGGAGGY | MEME-1 | 881 | + | 7 | 14 | 7.54e-05 | 0.014 | AAGGAGGG |
RAGGAGGY | MEME-1 | 1521 | + | 7 | 14 | 7.54e-05 | 0.014 | AAGGAGGG |
RAGGAGGY | MEME-1 | 521 | + | 7 | 14 | 7.54e-05 | 0.014 | AAGGAGGG |
RAGGAGGY | MEME-1 | 1492 | + | 7 | 14 | 7.54e-05 | 0.014 | AAGGAGGG |
RAGGAGGY | MEME-1 | 801 | + | 7 | 14 | 7.54e-05 | 0.014 | AAGGAGGG |
RAGGAGGY | MEME-1 | 270 | + | 8 | 15 | 7.54e-05 | 0.014 | AAGGAGGG |
RAGGAGGY | MEME-1 | 426 | + | 8 | 15 | 7.54e-05 | 0.014 | AAGGAGGG |
RAGGAGGY | MEME-1 | 1252 | + | 8 | 15 | 7.54e-05 | 0.014 | AAGGAGGG |
RAGGAGGY | MEME-1 | 1171 | + | 8 | 15 | 7.54e-05 | 0.014 | AAGGAGGG |
RAGGAGGY | MEME-1 | 687 | + | 9 | 16 | 7.54e-05 | 0.014 | AAGGAGGG |
RAGGAGGY | MEME-1 | 949 | + | 9 | 16 | 7.54e-05 | 0.014 | AAGGAGGG |
RAGGAGGY | MEME-1 | 1641 | + | 9 | 16 | 7.54e-05 | 0.014 | AAGGAGGG |
RAGGAGGY | MEME-1 | 1470 | + | 9 | 16 | 7.54e-05 | 0.014 | AAGGAGGG |
RAGGAGGY | MEME-1 | 1345 | + | 9 | 16 | 7.54e-05 | 0.014 | AAGGAGGG |
RAGGAGGY | MEME-1 | 742 | + | 9 | 16 | 7.54e-05 | 0.014 | AAGGAGGG |
RAGGAGGY | MEME-1 | 595 | + | 10 | 17 | 7.54e-05 | 0.014 | AAGGAGGG |
RAGGAGGY | MEME-1 | 913 | + | 10 | 17 | 7.54e-05 | 0.014 | AAGGAGGG |
RAGGAGGY | MEME-1 | 602 | + | 10 | 17 | 7.54e-05 | 0.014 | AAGGAGGG |
RAGGAGGY | MEME-1 | 1675 | + | 10 | 17 | 7.54e-05 | 0.014 | AAGGAGGG |
RAGGAGGY | MEME-1 | 888 | + | 10 | 17 | 7.54e-05 | 0.014 | AAGGAGGG |
RAGGAGGY | MEME-1 | 107 | + | 10 | 17 | 7.54e-05 | 0.014 | AAGGAGGG |
RAGGAGGY | MEME-1 | 863 | + | 10 | 17 | 7.54e-05 | 0.014 | AAGGAGGG |
RAGGAGGY | MEME-1 | 1519 | + | 10 | 17 | 7.54e-05 | 0.014 | AAGGAGGG |
RAGGAGGY | MEME-1 | 389 | + | 10 | 17 | 7.54e-05 | 0.014 | AAGGAGGG |
RAGGAGGY | MEME-1 | 1183 | + | 10 | 17 | 7.54e-05 | 0.014 | AAGGAGGG |
RAGGAGGY | MEME-1 | 1654 | + | 11 | 18 | 7.54e-05 | 0.014 | AAGGAGGG |
RAGGAGGY | MEME-1 | 829 | + | 11 | 18 | 7.54e-05 | 0.014 | AAGGAGGG |
RAGGAGGY | MEME-1 | 394 | + | 11 | 18 | 7.54e-05 | 0.014 | AAGGAGGG |
RAGGAGGY | MEME-1 | 721 | + | 11 | 18 | 7.54e-05 | 0.014 | AAGGAGGG |
RAGGAGGY | MEME-1 | 942 | + | 12 | 19 | 7.54e-05 | 0.014 | AAGGAGGG |
RAGGAGGY | MEME-1 | 872 | + | 13 | 20 | 7.54e-05 | 0.014 | AAGGAGGG |
RAGGAGGY | MEME-1 | 464 | + | 7 | 14 | 8.75e-05 | 0.0154 | CAGGAGGT |
RAGGAGGY | MEME-1 | 592 | + | 8 | 15 | 8.75e-05 | 0.0154 | CAGGAGGT |
RAGGAGGY | MEME-1 | 814 | + | 8 | 15 | 8.75e-05 | 0.0154 | CAGGAGGT |
RAGGAGGY | MEME-1 | 1026 | + | 8 | 15 | 8.75e-05 | 0.0154 | CAGGAGGT |
RAGGAGGY | MEME-1 | 577 | - | 2 | 9 | 8.75e-05 | 0.0154 | CAGGAGGT |
RAGGAGGY | MEME-1 | 875 | + | 9 | 16 | 8.75e-05 | 0.0154 | CAGGAGGT |
RAGGAGGY | MEME-1 | 850 | + | 9 | 16 | 8.75e-05 | 0.0154 | CAGGAGGT |
RAGGAGGY | MEME-1 | 1447 | + | 9 | 16 | 8.75e-05 | 0.0154 | CAGGAGGT |
RAGGAGGY | MEME-1 | 1109 | + | 9 | 16 | 8.75e-05 | 0.0154 | CAGGAGGT |
RAGGAGGY | MEME-1 | 1094 | + | 9 | 16 | 8.75e-05 | 0.0154 | CAGGAGGT |
RAGGAGGY | MEME-1 | 719 | + | 9 | 16 | 8.75e-05 | 0.0154 | CAGGAGGT |
RAGGAGGY | MEME-1 | 697 | + | 9 | 16 | 8.75e-05 | 0.0154 | CAGGAGGT |
RAGGAGGY | MEME-1 | 1851 | + | 13 | 20 | 8.75e-05 | 0.0154 | CAGGAGGT |
RAGGAGGY | MEME-1 | 650 | - | 9 | 16 | 8.75e-05 | 0.0154 | CAGGAGGT |
RAGGAGGY | MEME-1 | 2013 | + | 4 | 11 | 9.95e-05 | 0.0173 | ATGGAGGC |
RAGGAGGY | MEME-1 | 268 | + | 7 | 14 | 9.95e-05 | 0.0173 | ATGGAGGC |
Command line:
fimo --oc . --verbosity 1 --bgfile --nrdb-- --thresh 1.0E-4 motifs.meme test.fasta
Settings:
output_directory = . | MEME file name = motifs.meme | sequence file name = test.fasta |
background file name = --nrdb-- | alphabet = DNA | max stored scores = 100000 |
allow clobber = true | compute q-values = true | parse genomic coord. = true |
text only = false | scan both strands = true | max strand = false |
threshold type = p-value | output theshold = 0.0001 | pseudocount = 0.1 |
alpha = 1 | verbosity = 1 |
This information can be useful in the event you wish to report a problem with the FIMO software.