BLASTN 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: GCF_002007445.2_ASM200744v3_genomic.fna
           73,514 sequences; 2,440,277,323 total letters



Query= CP014225.1:2234710-2237641|23S_rRNA|Escherichia coli str. K-12
substr. MG1655 strain K-12

Length=2932
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

NC_009492.1 Ailuropoda melanoleuca mitochondrion, complete genome     65.3    3e-07
NC_048220.1 Ailuropoda melanoleuca isolate Jingjing chromosome 3,...  52.7    0.002
NW_023227450.1 Ailuropoda melanoleuca isolate Jingjing unplaced g...  50.0    0.006


>NC_009492.1 Ailuropoda melanoleuca mitochondrion, complete genome
Length=16805

 Score = 65.3 bits (71),  Expect = 3e-07
 Identities = 132/195 (68%), Gaps = 1/195 (1%)
 Strand=Plus/Plus

Query  2433  TCAACGGATAAAAGGTACTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGA  2492
             |||||||| | ||| ||| |  ||||||||||    || |   || ||||| ||||||||
Sbjct  3712  TCAACGGA-ACAAGTTACCCTAGGGATAACAGCGCAATCCTATCCGAGAGTCCATATCGA  3770

Query  2493  CGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGGGCTGAAGTAGGTCCCAA  2552
             |    | ||||   |||||||||| || |||  |||||||   | || || || |   ||
Sbjct  3771  CAATAGGGTTTACGACCTCGATGTTGGATCAGGACATCCTAATGGTGCAGCAGCTATTAA  3830

Query  2553  GGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACA  2612
              |||  |  |||||  |  |||||||  |||| || ||| ||| ||| ||  |  |  ||
Sbjct  3831  AGGTTCGTTTGTTCAACGATTAAAGTCCTACGTGATCTGAGTTCAGACCGGAGCAATCCA  3890

Query  2613  GTTCGGTCCCTATCT  2627
             | |||||  ||||||
Sbjct  3891  GGTCGGTTTCTATCT  3905


>NC_048220.1 Ailuropoda melanoleuca isolate Jingjing chromosome 
3, ASM200744v2, whole genome shotgun sequence
Length=147627920

 Score = 52.7 bits (57),  Expect = 0.002
 Identities = 63/86 (73%), Gaps = 0/86 (0%)
 Strand=Plus/Minus

Query  1898      GAAGCCCCGGTAAACGGCGGCCGTAACTATAACGGTCCTAAGGTAGCGAAATTCCTTGTC  1957
                 ||||  | |||||| || ||  |||| ||| ||  || ||||| ||| |||| ||| |||
Sbjct  14102103  GAAGTGCGGGTAAATGGAGGGAGTAAGTATGACTCTCTTAAGGCAGCCAAATGCCTCGTC  14102044

Query  1958      GGGTAAGTTCCGACCTGCACGAATGG  1983
                    ||| |  ||||||||| ||||||
Sbjct  14102043  ATCTAATTAGCGACCTGCATGAATGG  14102018


>NW_023227450.1 Ailuropoda melanoleuca isolate Jingjing unplaced 
genomic scaffold, ASM200744v2 unplaced-scaffold54251, whole 
genome shotgun sequence
Length=793

 Score = 50.0 bits (54),  Expect = 0.006
 Identities = 51/67 (76%), Gaps = 0/67 (0%)
 Strand=Plus/Plus

Query  2561  CTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTC  2620
             ||||||| | |||||||   |||| ||  || ||||||||||  |  || ||||||||| 
Sbjct  713   CTGTTCGACCTTTAAAGCCCTACGTGATTTGAGTTTAGAACGGTGAAAGCCAGTTCGGTT  772

Query  2621  CCTATCT  2627
              ||||||
Sbjct  773   TCTATCT  779



Lambda      K        H
   0.634    0.408    0.912 

Gapped
Lambda      K        H
   0.625    0.410    0.780 

Effective search space used: 7064680200606


  Database: GCF_002007445.2_ASM200744v3_genomic.fna
    Posted date:  Dec 26, 2024  7:27 PM
  Number of letters in database: 2,440,277,323
  Number of sequences in database:  73,514



Matrix: blastn matrix 2 -3
Gap Penalties: Existence: 5, Extension: 2