######################################## # Program: needle # Rundate: Sun 17 Nov 2013 14:07:46 # Commandline: needle # -asequence CISY_BACSU.fasta # -bsequence CISY_BACCO.fasta # -outfile 2_gen.txt # Align_format: srspair # Report_file: 2_gen.txt ######################################## #======================================= # # Aligned_sequences: 2 # 1: U05256 # 2: M74818 # Matrix: EDNAFULL # Gap_penalty: 10.0 # Extend_penalty: 0.5 # # Length: 1352 # Identity: 667/1352 (49.3%) # Similarity: 667/1352 (49.3%) # Gaps: 481/1352 (35.6%) # Score: 1246.0 # # #======================================= U05256 1 atggtacattacggattaa--------ag-----------ggaattacat 31 ||||| .|.||||.||.|| || |.||||.||. M74818 1 atggt-gaatacgaatcaatttattccaggtctcgaaggcgtaattgcaa 49 U05256 32 gtgta--gaa--------------acatccatcagccatatt--gatggt 63 |||.| ||| ||| ||.|.| |||.| |||.|| M74818 50 gtgaaacgaagatttcctttttagaca-ccgtga---atagtgagattgt 95 U05256 64 gaa--aaagggcgtctgatttacagaggacatcatgcaaaagacatcgca 111 || ||||| |||| |||.| || |.||| M74818 96 -aattaaagg---------ttac----gactt----------ac-ttgca 120 U05256 112 ctgaatcacagctttgaag--aagcggcttatttg---att--------- 147 || ||| |||| ||..|| .|||||| ||| M74818 121 ct--atc--------gaagacaaaagg-atatttggacattgtccatcta 159 U05256 148 ttatttggaa--aactgccttcaactgaa---gaattgcaggtattta-a 191 ||| ||.||| ||| |..|.|.|.|||| |||...|| ..||||| | M74818 160 tta-ttagaaggaac-gattccgaatgaagcggaaaaaca-acatttaga 206 U05256 192 agataagctggctgcggaac-gga-----atcttccggaacatattgagc 235 ||| |.||..|.||| .|| ||.|.||.||..|.||| M74818 207 aga------gactttgaaacaagagtatgatgtgccagatgaaatt---- 246 U05256 236 gcttgattca------atcactgc-----caaacaac-------atggac 267 ||||| |||.|||| .|||||.| |||||. M74818 247 -----attcaggtattatcgctgcttcctaaaacagcacatccaatggat 291 U05256 268 g-atatgtcggtcgtgag-aacggttgtt-tcagcattgggggaaaatac 314 | || || ||..||.||| |.||||..|| .||||.|.| |||| M74818 292 gcat-tg-cgtacgggagtatcggtccttgccagcttcg-------atac 332 U05256 315 gtacacattccatc-cga---------aaacagaggaag-------caat 347 ..|...|||..||| ||| ||||..|..||| |||| M74818 333 agaattattgaatcgcgagcattcgacaaacttaaaaagggcctatcaat 382 U05256 348 ccggct---------gattgcaatca-cgcctt--------ctatcattg 379 | ||||.|||.|| || || |||.|||.. M74818 383 -----tattgggaaagattccaaacatcg--ttgctaacagctaccatat 425 U05256 380 catacagaaaaagatggacgcgcggtgaacaagcaattgcaccttcttcc 429 |.||||.| ||| |..|||.|.|.||.|.||| | M74818 426 cctacaca-----------gcg------aagagccagtacaacctct--c 456 U05256 430 cagtacggacatgtc-------gaaaactactattat--atgctcacagg 470 || .|||.|.|| |.||||| |.|||| |||.|.||.|| M74818 457 ca----agacttatcctacagtgcaaact--ttttatacatgattaccgg 500 U05256 471 tgaacagccttcagaggcaaaaaagaaa----------gcgcttgaaacc 510 ..||.|.||..||||...|.||.||||| |..|.|.|..|. M74818 501 aaaaaaaccgacagaattagaagagaaaatttttgatcgttcattagtct 550 U05256 511 tatatgattctggccacggagcacgg--catgaac-gc----atcgactt 553 ||||| ||| | ||||||| || .||.||.| M74818 551 tatat--------------agc---gaacatgaactgccgaattctacct 583 U05256 554 tttcggcacgagt---------cacgttatctacagagagtgattta--- 591 ||.|.|||.|||| |||..|||| ||||||| M74818 584 ttacagcaagagtgattgcttccacactatc---------tgatttatat 624 U05256 592 -gtgtc---------agccgtcacggctgctctcggtacgatgaaaggtc 631 ||| | |||.||..|| ||..|| ||||||| M74818 625 ggtg-cattaacaggagcagttgcg-------tcatta-----aaaggtc 661 U05256 632 cgctgcacggaggtgctccttctgcggtgacaaaaatgcttgaagacatt 681 ..||.||.||.||.||...|...||.||.|...||||||||.|||| | M74818 662 atctccatggcggagcaaatgaggctgtaatggaaatgcttcaaga---t 708 U05256 682 ggagaaaaggaacatgctg-----------aagcatatctga-------- 712 |.|.||| ||| ||||||.|.|.| M74818 709 gcacaaa---------ctgtcgaaggctttaagcatttattacacgataa 749 U05256 713 ---aag--aaaaactcgaaaaaggagagcgcttgatgggattcggccaca 757 ||| ||||| |||||| .|.|||||.||.|||||.| M74818 750 attaagtaaaaaa---gaaaaa---------atcatgggctttggccata 787 U05256 758 gggtgtaca--aaacaaaa--gacccgcgggcag-aagctttga-gacag 801 |||||||.| ||| |||| ||.||.||.|||| || ||| || || M74818 788 gggtgtatatgaaa-aaaatggatcctcgtgcagcaa----tgatga-ag 831 U05256 802 aaagc------agaa-gaggtggccggcaatgaccg----tgatcttgat 840 .|||| |||| .|.||| ||| |.|.|| ||||| ||.| M74818 832 gaagcattaaaagaattaagtg--cgg---ttaacggggatgatc-tgct 875 U05256 841 cttgcgctgcatgt-agaagc---agaagcgattcgtttgctagaaatct 886 ||||| ..|||| .||||| ||||...|| |.||..||| M74818 876 cttgc---aaatgtgtgaagccggagaacaaat---tatgagaga----- 914 U05256 887 acaaaccgggacgaaagc-tgtacacaaatgttgaattttacgcagctgc 935 |||..||.|| |||.|.|||||.|.||.|.|||.||.||..| M74818 915 --------ggaaaaaggcttgttcccaaatttagactattatgcggcgcc 956 U05256 936 agtgatgagggccatcgatt-ttgacgatgaa--ttg------------- 969 .|| || ||| ||| ||| M74818 957 tgt---------------ttattg-----gaaacttggtattccgatccc 986 U05256 970 ----tttactccgacctt-ttcag--caagccgaatggtagggtggtgcg 1012 |.|||.||.|.||| ||.|| ||| |||.|||.||.|..||.| M74818 987 gctatatacaccaatcttctttagctcaa---gaacggttggtttatgtg 1033 U05256 1013 cccatgtactggaacaggca-gaaaacaacatgattttccggc--cgtca 1059 |.|||||..||||.|| ||| |||||.||...|||.|||||.| ||| M74818 1034 cgcatgtgatggagca-gcatgaaaataatcggatattccgaccacgt-- 1080 U05256 1060 gcgcaatataccggtgccattcccgaggaagttctttcat----aa---- 1101 |.||..|||||.|||| ||||| || |||.|.| || M74818 1081 gtgctttatactggtg-----cccga--aa---cttacgtgtcgaagatt 1120 U05256 1101 -- 1101 M74818 1121 ga 1122