TBLASTN 2.2.25+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: gt_genome.fasta
           1 sequences; 3,550,319 total letters



Query= sp|O06986|YVDD_BACSU LOG family protein yvdD OS=Bacillus subtilis
(strain 168) GN=yvdD PE=1 SV=1

Length=191
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  CP000557 CP000557.1 Geobacillus thermodenitrificans NG80-2, com...   202    1e-53


> CP000557 CP000557.1 Geobacillus thermodenitrificans NG80-2, complete 
genome.
Length=3550319

 Score =  202 bits (515),  Expect = 1e-53, Method: Compositional matrix adjust.
 Identities = 90/179 (51%), Positives = 133/179 (75%), Gaps = 0/179 (0%)
 Frame = +1

Query  1       MKTICVFAGSNPGGNEAYKRKAAELGVYMAEQGIGLVYGGSRVGLMGTIADAIMENGGTA  60
               MK ICVF GS+ G N  YK  A ELG+++A +GI L+YGG + GLMG +A+A++ + G  
Sbjct  289720  MKAICVFCGSSYGQNSKYKEAAQELGMFLARRGITLIYGGGKAGLMGEVAEAVLGHQGHV  289899

Query  61      IGVMPSGLFSGEVVHQNLTELIEVNGMHERKAKMSELADGFISMPGGFGTYEELFEVLCW  120
               +G++P  L   EV H  L+EL+ V+ MH RKAKM+E ADGFI++PGG+GTYEELFEVL W
Sbjct  289900  VGIIPQFLKDREVAHDRLSELVVVDTMHTRKAKMNEAADGFIALPGGYGTYEELFEVLSW  290079

Query  121     AQIGIHQKPIGLYNVNGYFEPMMKMVKYSIQEGFSNESHLKLIHSSSRPDELIEQMQNY  179
               +++G+HQKPIGL NV+G+F+P++ ++++++Q+GF+    L+LI S+     L E+M  +
Sbjct  290080  SRVGLHQKPIGLLNVDGFFDPLLDLLRHTVQQGFAAPQDLELIVSAGDVPTLYERMSMF  290256



Lambda     K      H
   0.317    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 131352849


  Database: gt_genome.fasta
    Posted date:  Oct 20, 2012  12:10 PM
  Number of letters in database: 3,550,319
  Number of sequences in database:  1



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40