Синим и зеленым обозначены цепи В и С связанной с белком ДНК. Светло-фиолетовым покрашена белковая цепь А. Красным окрашены лиганды — циклические монофосфаты CMP621 и CMP622.
Желтые шарики — моллекулы связанной воды.
define AMP1 cmp622 or 504-506 or 50-60 or 167-182 echo Ligand CMP 622 and nearest atoms are now called AMP1 =) define AMP2 cmp621 or 68-85 or 74-126 echo Ligand CMP 621 and nearest atoms are now called AMP2 =) echo echo define dnk_B 503-513 echo B-chain contents DNA fragment is now called DNK_B! =) define dnk_C 534-548 echo C-chain contents DNA fragment is now called DNK_C! =) echo echo define cont_Pro_DNA arg180 or glu181 or arg185 or arg169 or lys57 echo Zone of contact is now called cont_Pro_DNA!!! =) define zone 180-192 echo Nearest to the DNA zone of protein is now called zone! =) define AA1 arg180 or arg185 echo echo echo arg180 and arg185 as potential mutagenezis target are called AA1! =) define AA2 glu181 echo glu181 is now called AA2! =)
restrict none rotate x 70 rotate y 20 center leu50:A.CA select protein backbone 50 color cyan select dna backbone 50 wireframe 10 select DNK_B color blue select DNK_C color red # pause #
rotate x -70 rotate y -20 restrict zone or dna select zone spacefill select dna spacefill select lys57 or arg169 spacefill center arg180:A.NH2 rotate x 80 rotate y 30 rotate z 10 zoom 150 # pause #
restrict none select dna backbone 50 wireframe 10 select dna color cpk select cont_Pro_DNA wireframe 10 color cyan select nitrogen and cont_Pro_DNA color blue select oxygen and cont_Pro_DNA color red select (oxygen and cont_Pro_DNA) or (nitrogen and cont_Pro_DNA) cpk 150