TBLASTN 2.8.1+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: X5.fasta
           1,868 sequences; 23,962,143 total letters



Query= SYS_ENCCU Q8SS48 Serine--tRNA ligase (6.1.1.11) (Seryl-tRNA
synthetase) (SerRS) (Seryl-tRNA(Ser/Sec) synthetase)

Length=429
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  scaffold-693                                                        350     3e-108
  scaffold-170                                                        349     1e-107


> scaffold-693
Length=1268102

 Score = 350 bits (899),  Expect = 3e-108, Method: Compositional matrix adjust.
 Identities = 201/436 (46%), Positives = 275/436 (63%), Gaps = 21/436 (5%)
 Frame = +1

Query  1       MIDINLIRDPK--TREKVVESEKKRFRDGLAVGKAYELDRKRIEMNFRLDQINTRINQLN  58
               M+DIN  R  K    +K+ ES+++R      V +   LD + +++ F LD+ N  +N+L 
Sbjct  687862  MLDINEFRVEKGGNPDKIRESQRRRNA*VELVDQVIALD*EWVKLKFVLDEKNKDLNKL*  688041

Query  59      REIKSGYRQGKNKEDGDLSEKVAEIKGLSDEAKGLRDDVKAVEDELNKVMKGIGNIISPS  118
               +EI  G R    +   DL  +  E++   D+ K + D+    E E +  +  IGN++  S
Sbjct  688042  KEI--GMRMKAKESAEDLL*QKKEMEKARDQQKAIVDEK---ERERDTSLLLIGNLVHDS  688206

Query  119     VVVSNDEKDNPIVRSYRSSRNMQKNPRPFCVLMKDFTHSVAG------AKVMGHRGYYLS  172
               V VS DE +N +V+ +   +  +K  R   +       S+AG      +++ GHRGYYL 
Sbjct  688207  VPVSADENNNAVVKVHPEGKTPEK--RENILAHDQVLESLAGYDSERGSRIAGHRGYYLM  688380

Query  173     GKMARLAQALTRYAIDFLENKGYTYIQTPVMLRRDVMRKTSQLSDFDDQLYKVE---DDL  229
                    L  AL +Y + FL N+G+  I TP  + +DVM KT+QL++FD+ LYKV    D+ 
Sbjct  688381  NDGVDLNLALIQYGLQFLRNRGFNKISTPFFMNKDVMSKTAQLNEFDETLYKVSGDTDEK  688560

Query  230     YLIATSEQSLAALYMDERM-VPQE-VPKKFCGQSLCFRKEAGAHGKDNAGLFRVHQFEKI  287
               YLIATSEQ ++A +M+E    P E +P K+ G S CFRKEAGAHGKDN GLFRVHQFEKI
Sbjct  688561  YLIATSEQPISAFHMNECFDKPAE*LPIKYAGYSTCFRKEAGAHGKDNWGLFRVHQFEKI  688740

Query  288     EQFVICGPEESQKYHEEMIKACEEFYQSLDISYNVVGIVSGELNDAAAIKYDLEAYFPSA  347
               EQFV+  P +S +  EEMI   EEF +SL + Y VV IVSG LN+AAA KYDLEA+FP  
Sbjct  688741  EQFVLTEPGKSWEMLEEMIGTSEEFMKSLGLQYRVVSIVSGALNNAAAKKYDLEAWFPYQ  688920

Query  348     EKYRELVSCSNCTDYQSRELEIRYGVVKENNR-KIYVHLLNGTMCAVQRALCCIVENYQT  406
                 YRELVSCSNCTD+QSR +EIR G  K N++ K YVH LN T+CA +R +CC++ENYQT
Sbjct  688921  GVYRELVSCSNCTDFQSRRMEIRCGAKK*NSQEKKYVHCLNSTLCATERTMCCLLENYQT  689100

Query  407     GDGIAIPDVLQGYFGG  422
                DG+ +P+VL+ Y GG
Sbjct  689101  EDGVVVPEVLRPYMGG  689148


> scaffold-170
Length=449377

 Score = 349 bits (895),  Expect = 1e-107, Method: Compositional matrix adjust.
 Identities = 200/436 (46%), Positives = 277/436 (64%), Gaps = 21/436 (5%)
 Frame = +1

Query  1       MIDINLIRDPK--TREKVVESEKKRFRDGLAVGKAYELDRKRIEMNFRLDQINTRINQLN  58
               M+DIN  R  K    +K+ ES+++R  +   V +   LD++ +++ F LD+ N  +N+L 
Sbjct  113467  MLDINEFRVDKGGNPDKIRESQRRRNANVELVDQVIALDQEWVKLKFILDEKNKDLNKL*  113646

Query  59      REIKSGYRQGKNKEDGDLSEKVAEIKGLSDEAKGLRDDVKAVEDELNKVMKGIGNIISPS  118
               +EI  G R    +   DL     +++   D+ K + D+    E E +  +  IGN++  S
Sbjct  113647  KEI--GMRMKAKESAEDLL**KKDMEKARDQQKAIVDEK---ERERDTSLLLIGNLVHDS  113811

Query  119     VVVSNDEKDNPIVRSYRSSRNMQKNPRPFCVLMKDFTHSVAG------AKVMGHRGYYLS  172
               V +S DE +N +V+ +   +  +K  R   +       S+AG      +++ GHRGYYL 
Sbjct  113812  VPISADENNNAVVKVHPEGKTPEK--RENILAHDQVLESLAGYDSERGSRIAGHRGYYLM  113985

Query  173     GKMARLAQALTRYAIDFLENKGYTYIQTPVMLRRDVMRKTSQLSDFDDQLYKVE---DDL  229
                    L  AL +Y + FL N+G+T I TP  + +DVM KT+QL++FD+ LYKV    D+ 
Sbjct  113986  NDGVDLNLALIQYGL*FLRNRGFTKISTPFFMNKDVMSKTAQLNEFDETLYKVSGDTDEK  114165

Query  230     YLIATSEQSLAALYMDERM-VPQE-VPKKFCGQSLCFRKEAGAHGKDNAGLFRVHQFEKI  287
               YLIATSEQ ++A +M+E    P E +P K+ G S CFRKEAGAHGKDN GLFRVHQFEKI
Sbjct  114166  YLIATSEQPISAFHMNECFDKPAE*LPIKYAGYSTCFRKEAGAHGKDNWGLFRVHQFEKI  114345

Query  288     EQFVICGPEESQKYHEEMIKACEEFYQSLDISYNVVGIVSGELNDAAAIKYDLEAYFPSA  347
               EQFV+  P +S +  EEMI   EEF +SL + Y VV IVSG LN+AAA KYDLEA+FP  
Sbjct  114346  EQFVLTEPGKSWEMLEEMIGTSEEFMKSLGL*YRVVSIVSGALNNAAAKKYDLEAWFPYQ  114525

Query  348     EKYRELVSCSNCTDYQSRELEIRYGVVKENNR-KIYVHLLNGTMCAVQRALCCIVENYQT  406
                 YRELVSCSNCTD+QSR +EIR G  K N++ K YVH LN T+CA +R +CC++ENYQT
Sbjct  114526  GVYRELVSCSNCTDFQSRRMEIRCGAKK*NSQEKKYVHCLNSTLCATERTMCCLLENYQT  114705

Query  407     GDGIAIPDVLQGYFGG  422
                DG+ +P+VL+ Y GG
Sbjct  114706  EDGVVVPEVLRPYMGG  114753



Lambda      K        H        a         alpha
   0.318    0.136    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2557977864


  Database: X5.fasta
    Posted date:  Dec 25, 2021  2:56 PM
  Number of letters in database: 23,962,143
  Number of sequences in database:  1,868



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40