BLASTP 2.11.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: all.fasta 30,619 sequences; 9,914,722 total letters Query= sp|P0A6H1|CLPX_ECOLI ATP-dependent Clp protease ATP-binding subunit ClpX OS=Escherichia coli (strain K12) OX=83333 GN=clpX PE=1 SV=2 Length=424 Score E Sequences producing significant alignments: (Bits) Value sp|Q0SGZ3|CLPX_RHOJR ATP-dependent Clp protease ATP-binding subun... 534 0.0 sp|A1SME0|CLPX_NOCSJ ATP-dependent Clp protease ATP-binding subun... 528 0.0 tr|Q1AVT0|Q1AVT0_RUBXD ATP-dependent Clp protease ATP-binding sub... 524 0.0 sp|Q6NFU7|CLPX_CORDI ATP-dependent Clp protease ATP-binding subun... 518 0.0 sp|A0JXL2|CLPX_ARTS2 ATP-dependent Clp protease ATP-binding subun... 516 0.0 tr|Q47MU4|Q47MU4_THEFY ATP-dependent Clp protease ATP-binding sub... 516 0.0 sp|Q6AFZ6|CLPX_LEIXX ATP-dependent Clp protease ATP-binding subun... 509 1e-180 sp|Q8G5R1|CLPX_BIFLO ATP-dependent Clp protease ATP-binding subun... 432 1e-149 tr|A0K1M3|A0K1M3_ARTS2 ATPase AAA-2 domain protein OS=Arthrobacte... 54.3 6e-08 tr|Q1AU05|Q1AU05_RUBXD ATPase AAA-2 OS=Rubrobacter xylanophilus (... 52.0 3e-07 tr|Q8G871|Q8G871_BIFLO Protease OS=Bifidobacterium longum (strain... 51.2 7e-07 tr|Q0S6Y7|Q0S6Y7_RHOJR Chaperone protein ClpB OS=Rhodococcus jost... 47.8 8e-06 tr|Q0S8C7|Q0S8C7_RHOJR ATP-binding subunit of ATP-dependent Clp p... 47.0 1e-05 tr|Q6NFB1|Q6NFB1_CORDI ATP-dependent Clp protease ATP-binding sub... 45.8 4e-05 tr|Q47MZ2|Q47MZ2_THEFY ATPase OS=Thermobifida fusca (strain YX) O... 43.9 1e-04 tr|Q1AY82|Q1AY82_RUBXD ATPase AAA-2 OS=Rubrobacter xylanophilus (... 43.5 2e-04 sp|Q8G6B7|RUVB_BIFLO Holliday junction ATP-dependent DNA helicase... 42.7 2e-04 tr|Q6ACQ0|Q6ACQ0_LEIXX ATP-dependent zinc metalloprotease FtsH OS... 43.1 2e-04 tr|Q8G3S2|Q8G3S2_BIFLO ATP-dependent zinc metalloprotease FtsH OS... 43.1 2e-04 sp|A0JXB1|RUVB_ARTS2 Holliday junction ATP-dependent DNA helicase... 42.4 3e-04 tr|A1SDV1|A1SDV1_NOCSJ ATP-dependent zinc metalloprotease FtsH OS... 42.0 5e-04 tr|Q47KU4|Q47KU4_THEFY ATP-dependent zinc metalloprotease FtsH OS... 42.0 5e-04 tr|A0JR82|A0JR82_ARTS2 ATP-dependent zinc metalloprotease FtsH OS... 41.6 6e-04 tr|A0K236|A0K236_ARTS2 AAA ATPase, central domain protein OS=Arth... 41.6 6e-04 tr|Q0S8E3|Q0S8E3_RHOJR ATP-dependent zinc metalloprotease FtsH OS... 41.2 0.001 >sp|Q0SGZ3|CLPX_RHOJR ATP-dependent Clp protease ATP-binding subunit ClpX OS=Rhodococcus jostii (strain RHA1) OX=101510 GN=clpX PE=3 SV=1 Length=426 Score = 534 bits (1375), Expect = 0.0, Method: Compositional matrix adjust. Identities = 260/413 (63%), Positives = 331/413 (80%), Gaps = 8/413 (2%) Query 10 GKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPHE 69 G LL CSFCGKSQ +V+KLIAGP VYICDEC+DLCN+II EE+ E + + LP P E Sbjct 8 GDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAE-SSEVKLDELPKPAE 66 Query 70 IRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNG-----VELGKSNILLIGPTGSG 124 IR+ L++YVIGQ+ AK+ LAVAVYNHYKR++ GD VEL KSNIL++GPTG G Sbjct 67 IRDFLENYVIGQDAAKRTLAVAVYNHYKRIQAGDKGRDARGETVELAKSNILMLGPTGCG 126 Query 125 KTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYID 184 KT LA+TLA++L+VPF +ADAT LTEAGYVGEDVENI+ KL+Q DYDV++A+ GI+YID Sbjct 127 KTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKRAETGIIYID 186 Query 185 EIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKIL 244 E+DKI+RKS+NPSITRDVSGEGVQQALLK++EGT A+VPPQGGRKHP QEF+Q+DT+ +L Sbjct 187 EVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQIDTTNVL 246 Query 245 FICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEF 304 FI GAFAGL++++S RV GIGFGA V++K++ ++ + A+V PEDLIKFGLIPEF Sbjct 247 FIVAGAFAGLERIVSDRVGK-RGIGFGAEVRSKAEIDTQ-DHFAEVMPEDLIKFGLIPEF 304 Query 305 IGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMA 364 IGRLPVVA++ L +E+L+QIL EPKNAL KQY LF+++GV+LEF +AL+AIA +A+ Sbjct 305 IGRLPVVASVTNLDKESLVQILSEPKNALVKQYNRLFDMDGVELEFTTDALEAIADQAIL 364 Query 365 RKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPE 417 R TGARGLR+I+E LL MYD+PS +DVEKVV+ ++ P ++ KPE Sbjct 365 RGTGARGLRAIMEEVLLPVMYDIPSRDDVEKVVVSAETVNDNVLPTIVPRKPE 417 >sp|A1SME0|CLPX_NOCSJ ATP-dependent Clp protease ATP-binding subunit ClpX OS=Nocardioides sp. (strain ATCC BAA-499 / JS614) OX=196162 GN=clpX PE=3 SV=1 Length=426 Score = 528 bits (1360), Expect = 0.0, Method: Compositional matrix adjust. Identities = 267/423 (63%), Positives = 331/423 (78%), Gaps = 13/423 (3%) Query 10 GKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPHE 69 G LL CSFCGKSQ +V+KLIAGP VYICDEC+DLCN+II EE+ E A LP P E Sbjct 8 GDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELSEGA-EVSLDELPKPKE 66 Query 70 IRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNG--------DTSNGVELGKSNILLIGPT 121 I L+ YVIGQEQAKK LAVAVYNHYKR++ G VE+ KSNIL+IGPT Sbjct 67 IFEFLNSYVIGQEQAKKSLAVAVYNHYKRVQAGLQPMSGKHSKEEVVEVAKSNILVIGPT 126 Query 122 GSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIV 181 G GKT LA+TLAR+L+VPF +ADAT LTEAGYVGEDVENI+ KL+Q DYDV+KA+ GI+ Sbjct 127 GCGKTYLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAETGII 186 Query 182 YIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTS 241 YIDEIDK++RK++NPSITRDVSGEGVQQALLK+IEGT A+VPPQGGRKHP QEF+Q+DT+ Sbjct 187 YIDEIDKVARKAENPSITRDVSGEGVQQALLKIIEGTTASVPPQGGRKHPHQEFIQIDTT 246 Query 242 KILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLI 301 ILF+ GGAFAGL+ +I RV + +GF A V+ K+++ +E +LLAQV PEDL KFGLI Sbjct 247 NILFVVGGAFAGLEHIIEQRVGKKT-LGFTAEVRGKAEREAE-DLLAQVRPEDLTKFGLI 304 Query 302 PEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKK 361 PEFIGRLP++A++++L +EAL+QIL EP+NAL KQYQ LF L+GV+LEF +A++AIA Sbjct 305 PEFIGRLPLIASVSKLDQEALVQILTEPRNALVKQYQKLFELDGVELEFTPDAIEAIADN 364 Query 362 AMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVID-ESVIDGQSKPLLIYGKPEAQQ 420 A+ R TGARGLR+I+E LL MYD+PS D+ KV++ E V+DG S P LI + E ++ Sbjct 365 ALERGTGARGLRAIIEEVLLHVMYDVPSRGDIAKVIVTREVVMDGVS-PTLIPRESEKKK 423 Query 421 ASG 423 S Sbjct 424 KSA 426 >tr|Q1AVT0|Q1AVT0_RUBXD ATP-dependent Clp protease ATP-binding subunit ClpX OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129 / PRD-1) OX=266117 GN=clpX PE=3 SV=1 Length=420 Score = 524 bits (1349), Expect = 0.0, Method: Compositional matrix adjust. Identities = 260/401 (65%), Positives = 323/401 (81%), Gaps = 4/401 (1%) Query 13 LYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPHEIRN 72 L CSFCGKSQ +VRKLIAGP VYICDEC++LCN+II EE ++ LP P EI Sbjct 8 LQCSFCGKSQRQVRKLIAGPGVYICDECIELCNEIIDEEFSGPEVLKD-DDLPKPREINR 66 Query 73 HLDDYVIGQEQAKKVLAVAVYNHYKRLRNG-DTSNGVELGKSNILLIGPTGSGKTLLAET 131 L++YVIGQE+AKKVL+VAVYNHYKR++ G +T +G EL KSNILLIGPTGSGKTLLAET Sbjct 67 ILNEYVIGQEEAKKVLSVAVYNHYKRIQIGAETPDGTELQKSNILLIGPTGSGKTLLAET 126 Query 132 LARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKISR 191 LA++L+VPF +ADAT LTEAGYVGEDVENI+ KL+Q D+DV+KA+ GI+YIDEIDKI+R Sbjct 127 LAKILNVPFAIADATALTEAGYVGEDVENILLKLIQAADFDVKKAETGIIYIDEIDKIAR 186 Query 192 KSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAF 251 K+DNPSITRDVSGEGVQQALLK++EGTVA+VPPQGGRKHP Q+FLQ+DT ILFICGGAF Sbjct 187 KADNPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQDFLQIDTKNILFICGGAF 246 Query 252 AGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVV 311 GL+ +I R+ S IGF + + + ++ S+ E+L V+PEDL+K+GLIPEF+GRLPV+ Sbjct 247 GGLEDIIRQRIGKRS-IGFSSGLDRRLEEDSD-EILRHVQPEDLLKYGLIPEFVGRLPVI 304 Query 312 ATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARG 371 +TL+ L E L++IL EPKNAL +QY+ +F + VDL F DEAL AIA++A+ R TGARG Sbjct 305 STLHSLQERDLVRILTEPKNALVRQYRQIFRYDKVDLTFTDEALTAIAEQALERGTGARG 364 Query 372 LRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLI 412 LRSI+EAALL TMY+LPS DV K V+D + +P L+ Sbjct 365 LRSILEAALLPTMYELPSRSDVTKCVVDADTVREGVRPALV 405 >sp|Q6NFU7|CLPX_CORDI ATP-dependent Clp protease ATP-binding subunit ClpX OS=Corynebacterium diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype gravis) OX=257309 GN=clpX PE=3 SV=1 Length=430 Score = 518 bits (1333), Expect = 0.0, Method: Compositional matrix adjust. Identities = 258/418 (62%), Positives = 321/418 (77%), Gaps = 12/418 (3%) Query 5 RKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSA- 63 R S LL CSFCGKSQ +V+KLIAG VYICDEC++LCN+II EE+ A + + Sbjct 3 RMQESADLLKCSFCGKSQKQVKKLIAGGGVYICDECIELCNEIIEEELNSSAAEAKDNGD 62 Query 64 -LPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNG--------VELGKSN 114 LP P +I LD YVIGQ+ AK++L+VAVYNHYKR+R ++ EL KSN Sbjct 63 RLPRPSQISAFLDKYVIGQDDAKRILSVAVYNHYKRVRAEESRTTHKRASEEETELQKSN 122 Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 IL++GPTGSGKT LA+TLARLLDVPF +ADAT+LTEAGYVGEDVENI+ KLLQ D+DVQ Sbjct 123 ILMLGPTGSGKTYLAQTLARLLDVPFAIADATSLTEAGYVGEDVENILLKLLQAADFDVQ 182 Query 175 KAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQE 234 +AQRGI+Y+DE+DKISRKSDNPSITRDVSGEGVQQALLK++EGTVA++PPQGGRKHP Q+ Sbjct 183 RAQRGIIYVDEVDKISRKSDNPSITRDVSGEGVQQALLKILEGTVASIPPQGGRKHPNQD 242 Query 235 FLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPED 294 F+Q+DTS ILFI GAFAGL+KVI R GIGFGA + K+D + ++ V PED Sbjct 243 FIQLDTSNILFIVAGAFAGLEKVIEER-RGKKGIGFGAELTTKADTDAV-DVFRDVLPED 300 Query 295 LIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEA 354 L+KFGLIPEFIGRLP+VAT+N L + +L+++L EP+N+L KQYQ LF+++ VDLEF EA Sbjct 301 LVKFGLIPEFIGRLPIVATVNNLDQASLVKVLTEPRNSLVKQYQRLFDMDRVDLEFDPEA 360 Query 355 LDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLI 412 L AIA A+ R TGARGLR+I+E L+ MYD+P EDV V I+E+ + G +P +I Sbjct 361 LQAIADLAIDRGTGARGLRAIMEELLVPVMYDIPDREDVAVVRINEAAVRGLQEPEMI 418 >sp|A0JXL2|CLPX_ARTS2 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Arthrobacter sp. (strain FB24) OX=290399 GN=clpX PE=3 SV=1 Length=429 Score = 516 bits (1330), Expect = 0.0, Method: Compositional matrix adjust. Identities = 263/416 (63%), Positives = 318/416 (76%), Gaps = 18/416 (4%) Query 9 SGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPH 68 S LL CSFCGKSQ +VRKLIAGP VYICDEC++LCN+II EE+ EVA LP P Sbjct 7 STDLLKCSFCGKSQKQVRKLIAGPGVYICDECIELCNEIIEEELAEVA-DLGSFELPKPR 65 Query 69 EIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDT-----------SNGVELGKSNILL 117 EI + L +YVIGQE AK+ LAVAVYNHYKR++ G + VE+ KSNILL Sbjct 66 EIYDFLQEYVIGQEPAKRSLAVAVYNHYKRIQAGHAPKSGSLAEGVHHDDVEIAKSNILL 125 Query 118 IGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQ 177 IGPTG GKT LA+TLAR L+VPF +ADAT LTEAGYVGEDVENI+ KL+Q DYDV+KA+ Sbjct 126 IGPTGCGKTYLAQTLARRLNVPFAVADATALTEAGYVGEDVENILLKLIQAADYDVKKAE 185 Query 178 RGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQ 237 +GI+YIDEIDKISRKS+NPSITRDVSGEGVQQALLK++EGTVA+VPPQGGRKHP QEF+Q Sbjct 186 QGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQ 245 Query 238 VDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATV-KAKSDKASEGELLAQVEPEDLI 296 +DT+ +LFI GAFAGL+ +I R GIGFGA + + K++ S GE++ PEDL+ Sbjct 246 IDTTNVLFIVAGAFAGLEDIIGSR-SGRKGIGFGAPLNEVKNNSDSYGEVM----PEDLL 300 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 KFGLIPEFIGRLPV+ T++ L ALIQIL PKNAL KQYQ +F L+GV+L F DEALD Sbjct 301 KFGLIPEFIGRLPVITTVSNLDRPALIQILSTPKNALVKQYQKMFQLDGVELLFDDEALD 360 Query 357 AIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLI 412 IA +A+ R TGARGLR+I+E LL M+DLPS +D+ VVI V+ ++ P +I Sbjct 361 VIADQALERGTGARGLRAIMEEVLLPVMFDLPSRDDIASVVITADVVAKKAPPTMI 416 >tr|Q47MU4|Q47MU4_THEFY ATP-dependent Clp protease ATP-binding subunit ClpX OS=Thermobifida fusca (strain YX) OX=269800 GN=clpX PE=3 SV=1 Length=447 Score = 516 bits (1329), Expect = 0.0, Method: Compositional matrix adjust. Identities = 250/407 (61%), Positives = 318/407 (78%), Gaps = 8/407 (2%) Query 10 GKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPHE 69 G LL CSFCGKSQ +V++LIAGP VYICDEC+DLCN+II EE + A + LP P E Sbjct 31 GDLLKCSFCGKSQKQVKRLIAGPGVYICDECIDLCNEIIEEEFAD-ATELKWDNLPKPRE 89 Query 70 IRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNG---DTSNGVELGKSNILLIGPTGSGKT 126 I LD YV+GQEQAKK L+VAVYNHYKR+R+G + VE+ KSNILL+GPTGSGKT Sbjct 90 IYEFLDSYVVGQEQAKKALSVAVYNHYKRIRSGGDRSRDDDVEIAKSNILLLGPTGSGKT 149 Query 127 LLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEI 186 LLA+TLA++L VPF +ADAT LTEAGYVGEDVENI+ KL+Q DYDV+KA+ GI+YIDE+ Sbjct 150 LLAQTLAKILKVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAETGIIYIDEV 209 Query 187 DKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFI 246 DK++RKS+NPSITRDVSGEGVQQALLK++EGT A+VPPQGGRKHP QEF+Q+DT+ +LFI Sbjct 210 DKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFI 269 Query 247 CGGAFAGLDKVISHRVETG-SGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFI 305 CGGAF+GL+K+I R TG G+GF A V++K + + V PEDL+KFG+IPEF+ Sbjct 270 CGGAFSGLEKIIEAR--TGRQGMGFNAVVRSKKE-LENSDPFRDVMPEDLLKFGMIPEFV 326 Query 306 GRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMAR 365 GRLPV+ +++ L ALI+IL EP+NAL KQYQ LF L+ V+L+F +AL+AIA +A+ R Sbjct 327 GRLPVITSVHNLDRNALIRILTEPRNALVKQYQRLFELDNVELQFTQDALEAIADQAIMR 386 Query 366 KTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLI 412 TGARGLR+I+E LL MY++PS +DV +V+I + P ++ Sbjct 387 GTGARGLRAIIEEVLLSVMYEVPSRKDVARVIITREAVLEHVYPTIV 433 >sp|Q6AFZ6|CLPX_LEIXX ATP-dependent Clp protease ATP-binding subunit ClpX OS=Leifsonia xyli subsp. xyli (strain CTCB07) OX=281090 GN=clpX PE=3 SV=1 Length=424 Score = 509 bits (1312), Expect = 1e-180, Method: Compositional matrix adjust. Identities = 256/424 (60%), Positives = 323/424 (76%), Gaps = 15/424 (4%) Query 9 SGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSA---LP 65 S LL CSFCGKSQ +V++LIAGP VYICDECV+LCN+II E + E E S+ LP Sbjct 7 SADLLKCSFCGKSQKQVQQLIAGPGVYICDECVELCNEIIEERLAEAG--EEASSEFDLP 64 Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRN------GDTSNGVELGKSNILLIG 119 P EI L++YVIGQEQAK+ LAVAVYNHYKR+R D + VE+ KSNILLIG Sbjct 65 KPKEIFGFLEEYVIGQEQAKRSLAVAVYNHYKRVRARQAITAADAIDDVEIAKSNILLIG 124 Query 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRG 179 PTG GKT LA+TLAR L+VPF +ADAT LTEAGYVGEDVENI+ KL+Q DYDV++A+ G Sbjct 125 PTGCGKTYLAQTLARRLNVPFAVADATALTEAGYVGEDVENILLKLIQAADYDVKRAETG 184 Query 180 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVD 239 I+YIDE+DKI+RK++NPSITRDVSGEGVQQALLK++EGTVA+VPPQGGRKHP QEF+Q+D Sbjct 185 IIYIDEVDKIARKAENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQID 244 Query 240 TSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFG 299 T+ +LFI GAFAGL+ +IS+R GIGFGA + +K D + L ++V PEDL KFG Sbjct 245 TTNVLFIVAGAFAGLEDIISNRA-GKKGIGFGAPLHSKGDDIN---LFSEVLPEDLHKFG 300 Query 300 LIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIA 359 LIPEFIGRLPVV T+ +L ++AL+QIL EPKNAL +QYQ +F L+GV LEF AL+AIA Sbjct 301 LIPEFIGRLPVVTTVTQLDQDALMQILTEPKNALVRQYQRMFELDGVQLEFDHAALEAIA 360 Query 360 KKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQ 419 A+ RKTGARGLR+I+E L M+++PS +V +VV+ + + + P ++ +P + Sbjct 361 DLAVLRKTGARGLRAIMEEVLGPIMFEVPSSSEVARVVVTKEAVLENAAPTIVPHRPRRE 420 Query 420 QASG 423 + S Sbjct 421 EKSA 424 >sp|Q8G5R1|CLPX_BIFLO ATP-dependent Clp protease ATP-binding subunit ClpX OS=Bifidobacterium longum (strain NCC 2705) OX=206672 GN=clpX PE=3 SV=2 Length=472 Score = 432 bits (1112), Expect = 1e-149, Method: Compositional matrix adjust. Identities = 233/439 (53%), Positives = 304/439 (69%), Gaps = 48/439 (11%) Query 15 CSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPHEIRNHL 74 C+FCGK++H+VRKL+AGP+ ICDEC+ LC DII EE + A S LP P +I ++L Sbjct 14 CTFCGKTEHQVRKLVAGPNASICDECIALCVDIISEERVKDAEVNSLS-LPKPAQIFDYL 72 Query 75 DDYVIGQEQAKKVLAVAVYNHYKRL----------------------------------- 99 + YVIGQE AK+ L+VAVYNHYKR+ Sbjct 73 NRYVIGQENAKRALSVAVYNHYKRVNMELQESAEQLDGNNGHSGQTSKQAKQSVPTQTRA 132 Query 100 --RNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 157 R+ D VE+ KSNILL+GPTG GKT LA+ LAR+++VPF + DATTLTEAGYVG+D Sbjct 133 TRRSNDPLADVEVAKSNILLLGPTGVGKTYLAQALARVMNVPFVITDATTLTEAGYVGDD 192 Query 158 VENIIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKS-DNPSITRDVSGEGVQQALLKLIE 216 VE ++Q+LLQ D DV +AQ GI+YIDEIDKI+RKS +N SITRDVSGEGVQQALLK++E Sbjct 193 VETVLQRLLQAADGDVSRAQHGIIYIDEIDKIARKSGENTSITRDVSGEGVQQALLKILE 252 Query 217 GTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRV---ETGSGIGFGAT 273 GT+A+VP +G RKH +Q+ Q+DT ILFICGGAF GL ++ R+ ETG FGA Sbjct 253 GTIASVPLEGTRKHKEQDVAQMDTRGILFICGGAFVGLTDIVRKRLGRRETG----FGAN 308 Query 274 VKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNAL 333 +D E ELL QV +DL +FGL+PEFIGRLPV + L EL+ + L IL +P NAL Sbjct 309 WH-DADMKDE-ELLEQVNADDLAEFGLLPEFIGRLPVTSVLKELTVDDLTAILTQPANAL 366 Query 334 TKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDV 393 KQY+ LF ++GVDL+F ++A+ AIA A+ + TGARGLRSI+E L DTM+ LPS++DV Sbjct 367 IKQYRKLFAVDGVDLQFTEQAIRAIADIAIKQGTGARGLRSIIERTLQDTMFQLPSLDDV 426 Query 394 EKVVIDESVIDGQSKPLLI 412 +V++D++ ++G S P L+ Sbjct 427 RQVIVDKASVEGSSTPKLL 445 >tr|A0K1M3|A0K1M3_ARTS2 ATPase AAA-2 domain protein OS=Arthrobacter sp. (strain FB24) OX=290399 GN=Arth_3818 PE=3 SV=1 Length=857 Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 85/328 (26%), Positives = 144/328 (44%), Gaps = 65/328 (20%) Query 74 LDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA 133 L V+GQE A ++A +V +R R G + G +G + L +GPTG GKT LA+ LA Sbjct 547 LHQRVVGQEDAVSLIAKSV----RRNRTGMGAAGRPIG--SFLFLGPTGVGKTELAKALA 600 Query 134 RLL------DVPFTMAD------ATTLTEA--GYVGEDVENIIQKLLQKCDYDVQKAQRG 179 L + F M++ + L A GYVG D + + +++ Y Sbjct 601 GSLFGSEDSMIRFDMSEFGERHTVSRLVGAPPGYVGYDEAGQLTERVRRNPYS------- 653 Query 180 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVD 239 IV +DE++K D ++ V +G +L +G GR + + + Sbjct 654 IVLLDEVEKA--HPDVFNLLLQVLDDG------RLTDGH--------GRTVDFRNTVVIM 697 Query 240 TSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFG 299 TS + G F L T +G FG S+KA +LA+ ++ Sbjct 698 TSNL----GSEF--LASKAGPTGFTAAGDAFG------SEKALRDRVLAR------LRES 739 Query 300 LIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIA 359 + PEF+ R+ + +L L QI++ + + A +G+ L ++A+D IA Sbjct 740 MRPEFLNRIDEIVLFRKLDRAQLRQIVR----LMLDETDARLRSQGIGLVVSEDAVDWIA 795 Query 360 KKAMARKTGARGLRSIVEAALLDTMYDL 387 ++ + GAR +R +++ L D + DL Sbjct 796 ERGYEPEYGARPMRRVIQRELDDRIADL 823 >tr|Q1AU05|Q1AU05_RUBXD ATPase AAA-2 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129 / PRD-1) OX=266117 GN=Rxyl_2179 PE=3 SV=1 Length=834 Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 79/328 (24%), Positives = 137/328 (42%), Gaps = 67/328 (20%) Query 74 LDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA 133 L V+GQ++A K ++ ++ L++ + +G + + +GPTG GKT LA TLA Sbjct 515 LHGRVVGQDEAIKAVSRSIRRTMAGLKDPNRPSG------SFVFLGPTGVGKTELARTLA 568 Query 134 RLL----------DVPFTMADATTL----TEAGYVGEDVENIIQKLLQKCDYDVQKAQRG 179 L D+ M T + GYVG D + + +++ Y V Sbjct 569 EYLFGDQDAMIRLDMSEYMERHTVSRLVGSPPGYVGYDEGGQLTEQVRRRPYSV------ 622 Query 180 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVD 239 V DEI+K +P + LL+++E + GR VD Sbjct 623 -VLFDEIEKA-----HPDVF---------NILLQILED--GQLTDAQGR--------TVD 657 Query 240 TSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFG 299 ++ I V + + +GFGA + S K E+ ++V E ++ Sbjct 658 FKNVVLIM------TSNVGAQHINKTKTLGFGAGEEGLSYK----EMKSRVTSE--LRKI 705 Query 300 LIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIA 359 PE + R+ + ++L E + QI++ L +Q V LEF EALD +A Sbjct 706 FRPELLNRIDEIIVFHKLEREHVRQIIEIQVKRLREQLAE----RNVTLEFTPEALDKLA 761 Query 360 KKAMARKTGARGLRSIVEAALLDTMYDL 387 ++ GAR L+ +++ + D M ++ Sbjct 762 EEGYDPAFGARPLKRVLQRMVEDPMSEM 789 >tr|Q8G871|Q8G871_BIFLO Protease OS=Bifidobacterium longum (strain NCC 2705) OX=206672 GN=clpC PE=3 SV=1 Length=869 Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 84/344 (24%), Positives = 144/344 (42%), Gaps = 71/344 (21%) Query 74 LDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA 133 L +IGQ++A L+ ++ L++ +G + + GPTG GKT LA+TLA Sbjct 518 LHKRIIGQDEAVSALSRSIRRTRVGLKDPKRPSG------SFIFAGPTGVGKTELAKTLA 571 Query 134 RLL---DVPFTMADATTLTEA-----------GYVG-EDVENIIQKLLQKCDYDVQKAQR 178 L + D + +E GYVG E+ + +K V++ Sbjct 572 EFLFDDEDALIRVDMSEFSEKYAASRLFGAPPGYVGYEEGGELTEK--------VRRKPF 623 Query 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 +V DEI+K +P I LL++++ + GRK V Sbjct 624 SVVLFDEIEKA-----HPDIF---------NTLLQVLDD--GHLTDGQGRK--------V 659 Query 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298 D + I D I+ TG +G ++++S + QV E +K Sbjct 660 DFKNTIIILTTNLGTRD--IAKAANTGFNLG-------ANNESSYQRMKDQVSSE--LKQ 708 Query 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358 PEF+ RL + +L+E + QI+ L + LF+ + LE D A D + Sbjct 709 QFRPEFLNRLDDIIVFKQLTEPQVRQIVDLDVKQLNDR---LFDRH-MSLELTDAAKDLL 764 Query 359 AKKAMARKTGARGLRSIVEAALLDTMYD---LPSMEDVEKVVID 399 A+K GAR LR +++ + D + + + +ED ++V++D Sbjct 765 AQKGFDPLLGARPLRRVIQRDIEDAISEKILMGDLEDGQRVIVD 808 >tr|Q0S6Y7|Q0S6Y7_RHOJR Chaperone protein ClpB OS=Rhodococcus jostii (strain RHA1) OX=101510 GN=clpC2 PE=3 SV=1 Length=807 Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 78/332 (23%), Positives = 136/332 (41%), Gaps = 66/332 (20%) Query 70 IRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLA 129 + + L VIGQ+ A + +A AV +R R G + +G + L +GPTG GKT LA Sbjct 502 LEDELHRRVIGQDDAVRAIARAV----RRSRTGMSDPDRPVG--SFLFLGPTGVGKTELA 555 Query 130 ETLARLL---DVPFTMADATTLTE-----------AGYVGEDVENIIQKLLQKCDYDVQK 175 + LA L + D + E GYVG + + +++ Y V Sbjct 556 KALAATLFGDENKMLRLDMSEFGERHTVSRLVGAPPGYVGYGEAGQLTEQVRRNPYSV-- 613 Query 176 AQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEF 235 + +DEI+K +P + LL++++ GR Q Sbjct 614 -----ILLDEIEKA-----HPDVF---------NTLLQVLDD---------GRLTDGQ-G 644 Query 236 LQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDL 295 VD + I +IS + +GF S+K ++ + Sbjct 645 RTVDFKNTVLIMTSNLGS--DIISSK---SGALGFSTGDAEASEKPLRDRVMGR------ 693 Query 296 IKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEAL 355 ++ + PEF+ R+ + +L E L +I + K+ Q+ +G+++ F + A+ Sbjct 694 LRESMRPEFLNRIDEIVIFRKLDNEQLHRITDLLLDDSRKRLQS----KGIEISFSEAAV 749 Query 356 DAIAKKAMARKTGARGLRSIVEAALLDTMYDL 387 D IA+ + GAR LR ++ A+ D + DL Sbjct 750 DWIAEHGHQPEFGARPLRRSIQRAVDDRIADL 781 >tr|Q0S8C7|Q0S8C7_RHOJR ATP-binding subunit of ATP-dependent Clp protease OS=Rhodococcus jostii (strain RHA1) OX=101510 GN=clpC1 PE=4 SV=1 Length=845 Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 72/330 (22%), Positives = 136/330 (41%), Gaps = 68/330 (21%) Query 70 IRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLA 129 + L +IGQE A K +A A+ L++ +G + + GP+G GKT LA Sbjct 508 MEEELHKRIIGQEDAVKAVAKAIRRTRAGLKDPKRPSG------SFIFAGPSGVGKTELA 561 Query 130 ETLARLL---DVPFTMAD---------ATTLTEA--GYVG-EDVENIIQKLLQKCDYDVQ 174 ++LA L D D A+ L A GYVG E+ + +K V+ Sbjct 562 KSLANFLFGEDDALIQIDMGEFHDRFTASRLFGAPPGYVGYEEGGQLTEK--------VR 613 Query 175 KAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQE 234 + +V DEI+K ++ + LL+++E G Q Sbjct 614 RKPFSVVLFDEIEKAHQE--------------IYNTLLQVLE--------DGRLTDGQGR 651 Query 235 FLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPED 294 + + ++F + + K + G+GF K D+++ + +V E Sbjct 652 TVDFKNTVLIFTSNLGTSDISKAV--------GLGF---TSGKGDESNYERMKLKVHDE- 699 Query 295 LIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEA 354 +K PEF+ R+ + ++L+ E ++Q++ + + + + + + +E D+A Sbjct 700 -LKKHFRPEFLNRIDDIVVFHQLTTEQIVQMV----DLMVARVEVALKNKDMTMEVTDKA 754 Query 355 LDAIAKKAMARKTGARGLRSIVEAALLDTM 384 +AK+ GAR LR ++ + D + Sbjct 755 KSLLAKRGFDPVLGARPLRRTIQREIEDQL 784 >tr|Q6NFB1|Q6NFB1_CORDI ATP-dependent Clp protease ATP-binding subunit OS=Corynebacterium diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype gravis) OX=257309 GN=clpC PE=4 SV=1 Length=883 Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 74/356 (21%), Positives = 148/356 (42%), Gaps = 67/356 (19%) Query 70 IRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLA 129 + L +IGQ+ A K ++ A+ L++ +G + + GP+G GKT L+ Sbjct 528 MEEELHKRIIGQDDAVKSVSRAIRRTRAGLKDPRRPSG------SFIFAGPSGVGKTELS 581 Query 130 ETLARLL---DVPFTMAD---------ATTLTEA--GYVGEDVENIIQKLLQKCDYDVQK 175 ++LA L D D A+ L A GYVG D + + +++ + V Sbjct 582 KSLANFLFGDDDALIQIDMGEFHDRFTASRLFGAPPGYVGYDEGGQLTEKVRRKPFSV-- 639 Query 176 AQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEF 235 V DEI+K ++ + LL+++E +G Q Sbjct 640 -----VLFDEIEKAHKE--------------IYNTLLQVLE--------EGRLTDGQGRV 672 Query 236 LQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDL 295 + + ++F + K + G+GF + + D + + + Q + D Sbjct 673 VDFKNTVLIFTSNLGTQDISKAV--------GMGFSSV--GEHDADGQYDRMKQ-KVNDE 721 Query 296 IKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEAL 355 +K PEF+ R+ + ++L++E +++++ + L + + + +E ++A Sbjct 722 LKKHFRPEFLNRIDEIVVFHQLTQEQIVEMV----DLLIGRVSKALAQKDMGIELTEKAK 777 Query 356 DAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDV---EKVVIDESVIDGQSK 408 + +AK+ GAR LR ++ + D + + +V E V +D DG+SK Sbjct 778 NLLAKRGFDPVLGARPLRRTIQREIEDVLSEKILFGEVGAGEIVTVDVEGWDGESK 833 >tr|Q47MZ2|Q47MZ2_THEFY ATPase OS=Thermobifida fusca (strain YX) OX=269800 GN=Tfu_2144 PE=3 SV=1 Length=802 Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/145 (31%), Positives = 63/145 (43%), Gaps = 13/145 (9%) Query 76 DYVIGQEQAKK-VLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 134 D ++G E K+ V A+A RLR G V + + +GP G+GKT +A L R Sbjct 531 DAMVGLEPVKRQVRAIAAQLRMARLREGQGLR-VPAPMRHFVFVGPPGTGKTTVARILGR 589 Query 135 LLDV--PFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKISRK 192 + T AD + A VGE + K Q D +A G+++IDE + Sbjct 590 VFAALGLLTRADVVEASRADLVGEHLGATAIKTNQLVD----RALGGVLFIDEAYSLV-- 643 Query 193 SDNPSIT-RDVSGEGVQQALLKLIE 216 NP + D G Q LLK E Sbjct 644 --NPGYSGGDAFGSEAVQTLLKRAE 666 >tr|Q1AY82|Q1AY82_RUBXD ATPase AAA-2 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129 / PRD-1) OX=266117 GN=Rxyl_0676 PE=3 SV=1 Length=886 Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 77/339 (23%), Positives = 141/339 (42%), Gaps = 79/339 (23%) Query 78 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL- 136 V+GQ++A + +A A+ +R R G + +G + L +GPTG GKT LA TLA L Sbjct 582 VVGQDEAVEAVAEAI----RRARAGLSDPNRPIG--SFLFLGPTGVGKTELARTLAEALF 635 Query 137 --DVPFTMADATTLTE-----------AGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYI 183 + D + E GYVG + + + +++ Y V + + Sbjct 636 GDEAAMVRIDMSEFQERHTVSRLVGAPPGYVGYEEAGQLTEAVRRRPYSV-------LLL 688 Query 184 DEIDKISRKSDNPSITRDVSGEGVQQALLKLI-EGTVAAVPPQGGRKHPQQEFLQVDTSK 242 DEI+K +P + LL+++ EG + GR VD Sbjct 689 DEIEKA-----HPDVF---------NLLLQILDEGRLTDAQ---GRT--------VDFKN 723 Query 243 ILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIP 302 + I G +++ +H + K E + Q+ ++ P Sbjct 724 TVIIMTSNL-GAERIQAH-------------ARRKESFEELKEDMMQI-----VRRSFRP 764 Query 303 EFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKA 362 EFI R+ + LS E +++I + ++ +A + +++EF D A++ IA + Sbjct 765 EFINRIDEIIIFRALSREQILEIARLLLERTRRRLKA----QDIEVEFTDAAVEHIAGEG 820 Query 363 MARKTGARGLRSIVEAALLDTMYDL---PSMEDVEKVVI 398 + GAR LR ++ + + + L S+E ++VV+ Sbjct 821 FDPEFGARPLRRTIQRQVDNELSRLLLEGSVEPGDRVVV 859 >sp|Q8G6B7|RUVB_BIFLO Holliday junction ATP-dependent DNA helicase RuvB OS=Bifidobacterium longum (strain NCC 2705) OX=206672 GN=ruvB PE=3 SV=1 Length=354 Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 60/126 (48%), Gaps = 24/126 (19%) Query 69 EIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLL 128 E+R H+ IGQ + K L + + KR ++ +ILL GP G GKT L Sbjct 36 ELRPHVLGGFIGQPRLKAQLQLFLDAARKR----------DVPPDHILLAGPPGLGKTTL 85 Query 129 AETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDK 188 A +A L+VP + + AG D+ +I+ L DV + +++IDEI + Sbjct 86 AMIVANELEVPIRVTSGPAVQHAG----DLASILSSL------DVGE----VLFIDEIHR 131 Query 189 ISRKSD 194 + R ++ Sbjct 132 LPRAAE 137 >tr|Q6ACQ0|Q6ACQ0_LEIXX ATP-dependent zinc metalloprotease FtsH OS=Leifsonia xyli subsp. xyli (strain CTCB07) OX=281090 GN=ftsH PE=3 SV=1 Length=667 Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 40/77 (52%), Gaps = 6/77 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +LL GP G+GKTLLA +A VPF + E +VG ++ L Q+ + Sbjct 200 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFQQA----K 253 Query 175 KAQRGIVYIDEIDKISR 191 + I++IDEID + R Sbjct 254 ENSPAIIFIDEIDAVGR 270 >tr|Q8G3S2|Q8G3S2_BIFLO ATP-dependent zinc metalloprotease FtsH OS=Bifidobacterium longum (strain NCC 2705) OX=206672 GN=ftsH PE=3 SV=1 Length=696 Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/78 (36%), Positives = 40/78 (51%), Gaps = 6/78 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +LL GP G+GKTLLA +A VPF + E +VG ++ L + + Sbjct 252 VLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEM-FVGLGASR-VRDLFDEA----K 305 Query 175 KAQRGIVYIDEIDKISRK 192 K I++IDEID + RK Sbjct 306 KNAPAIIFIDEIDAVGRK 323 >sp|A0JXB1|RUVB_ARTS2 Holliday junction ATP-dependent DNA helicase RuvB OS=Arthrobacter sp. (strain FB24) OX=290399 GN=ruvB PE=3 SV=1 Length=362 Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 60/123 (49%), Gaps = 25/123 (20%) Query 72 NHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAET 131 +L D+V GQ + +K L++ + R R+ D ++LL GP G GKT L+ Sbjct 25 KNLHDFV-GQHRVRKQLSLVLEASRMRGRSAD----------HVLLSGPPGLGKTTLSMI 73 Query 132 LARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKISR 191 +A ++ P ++ + AG D+ I+ L ++ ++++DEI ++SR Sbjct 74 IAAEMNAPLRISSGPAIQHAG----DLAAILSSL----------SEGEVLFLDEIHRMSR 119 Query 192 KSD 194 ++ Sbjct 120 PAE 122 >tr|A1SDV1|A1SDV1_NOCSJ ATP-dependent zinc metalloprotease FtsH OS=Nocardioides sp. (strain ATCC BAA-499 / JS614) OX=196162 GN=ftsH PE=3 SV=1 Length=681 Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 39/77 (51%), Gaps = 6/77 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +LL GP G+GKTLLA +A VPF + E +VG ++ L ++ + Sbjct 199 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQAKENAP 256 Query 175 KAQRGIVYIDEIDKISR 191 IV+IDEID + R Sbjct 257 ----AIVFIDEIDAVGR 269 >tr|Q47KU4|Q47KU4_THEFY ATP-dependent zinc metalloprotease FtsH OS=Thermobifida fusca (strain YX) OX=269800 GN=ftsH PE=3 SV=1 Length=682 Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/77 (34%), Positives = 39/77 (51%), Gaps = 6/77 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +LL GP G+GKTLLA +A VPF + E +VG ++ L ++ + Sbjct 200 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQAKANAP 257 Query 175 KAQRGIVYIDEIDKISR 191 I++IDEID + R Sbjct 258 ----AIIFIDEIDAVGR 270 >tr|A0JR82|A0JR82_ARTS2 ATP-dependent zinc metalloprotease FtsH OS=Arthrobacter sp. (strain FB24) OX=290399 GN=ftsH PE=3 SV=1 Length=689 Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 40/77 (52%), Gaps = 6/77 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +LL GP G+GKTLLA +A VPF + E +VG ++ L ++ + Sbjct 205 VLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA----K 258 Query 175 KAQRGIVYIDEIDKISR 191 + I+++DEID + R Sbjct 259 ASSPAIIFVDEIDAVGR 275 >tr|A0K236|A0K236_ARTS2 AAA ATPase, central domain protein OS=Arthrobacter sp. (strain FB24) OX=290399 GN=Arth_3981 PE=3 SV=1 Length=471 Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 30/105 (29%), Positives = 52/105 (50%), Gaps = 18/105 (17%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTE--AGYVGEDVENIIQKLLQKCDYD 172 ++L GP G+GKT A+ +A L+ PF + L G G L++ + Sbjct 231 VVLFGPPGTGKTTFAKAIASRLEWPFVEVFPSRLAADPKGLAGA---------LRETFLE 281 Query 173 VQKAQRGIVYIDEIDKIS--RKSDNPSITRDVSGEGVQQALLKLI 215 + + + +V+IDE+++I+ R + PS +GV LLK+I Sbjct 282 IAELEHAVVFIDEVEEIASQRSGEPPSPL-----QGVTNELLKII 321 >tr|Q0S8E3|Q0S8E3_RHOJR ATP-dependent zinc metalloprotease FtsH OS=Rhodococcus jostii (strain RHA1) OX=101510 GN=ftsH PE=3 SV=1 Length=756 Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 38/78 (49%), Gaps = 6/78 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +LL GP G+GKTLLA +A VPF + E +VG + Q + Sbjct 202 VLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM-FVGVGASRVRDMFDQ-----AK 255 Query 175 KAQRGIVYIDEIDKISRK 192 + I+++DEID + R+ Sbjct 256 QNSPCIIFVDEIDAVGRQ 273 Lambda K H a alpha 0.316 0.135 0.378 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 2220314328 Database: all.fasta Posted date: Oct 18, 2022 7:19 PM Number of letters in database: 9,914,722 Number of sequences in database: 30,619 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40