******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.4.1 (Release date: Sat Aug 21 19:23:23 2021 -0700) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= meme_sequences.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ DTL3_RS00010 1.0000 20 DTL3_RS00015 1.0000 20 DTL3_RS00020 1.0000 20 DTL3_RS00025 1.0000 20 DTL3_RS00030 1.0000 20 DTL3_RS00035 1.0000 20 DTL3_RS00040 1.0000 20 DTL3_RS00045 1.0000 20 DTL3_RS00050 1.0000 20 DTL3_RS00055 1.0000 20 DTL3_RS00060 1.0000 20 DTL3_RS00075 1.0000 20 DTL3_RS00080 1.0000 20 DTL3_RS00085 1.0000 20 DTL3_RS00090 1.0000 20 DTL3_RS00095 1.0000 20 DTL3_RS00100 1.0000 20 DTL3_RS00105 1.0000 20 DTL3_RS00125 1.0000 20 DTL3_RS00130 1.0000 20 DTL3_RS00135 1.0000 20 DTL3_RS00155 1.0000 20 DTL3_RS00160 1.0000 20 DTL3_RS00170 1.0000 20 DTL3_RS00175 1.0000 20 DTL3_RS00180 1.0000 20 DTL3_RS00185 1.0000 20 DTL3_RS00190 1.0000 20 DTL3_RS00200 1.0000 20 DTL3_RS00210 1.0000 20 DTL3_RS00215 1.0000 20 DTL3_RS00220 1.0000 20 DTL3_RS00225 1.0000 20 DTL3_RS00230 1.0000 20 DTL3_RS00235 1.0000 20 DTL3_RS00250 1.0000 20 DTL3_RS00255 1.0000 20 DTL3_RS00260 1.0000 20 DTL3_RS00265 1.0000 20 DTL3_RS00270 1.0000 20 DTL3_RS00275 1.0000 20 DTL3_RS00280 1.0000 20 DTL3_RS00290 1.0000 20 DTL3_RS00295 1.0000 20 DTL3_RS00300 1.0000 20 DTL3_RS00310 1.0000 20 DTL3_RS00315 1.0000 20 DTL3_RS00320 1.0000 20 DTL3_RS00325 1.0000 20 DTL3_RS00330 1.0000 20 DTL3_RS00335 1.0000 20 DTL3_RS00340 1.0000 20 DTL3_RS00345 1.0000 20 DTL3_RS00350 1.0000 20 DTL3_RS00355 1.0000 20 DTL3_RS00365 1.0000 20 DTL3_RS00385 1.0000 20 DTL3_RS00390 1.0000 20 DTL3_RS00395 1.0000 20 DTL3_RS00400 1.0000 20 DTL3_RS00405 1.0000 20 DTL3_RS00415 1.0000 20 DTL3_RS00420 1.0000 20 DTL3_RS00435 1.0000 20 DTL3_RS00440 1.0000 20 DTL3_RS00445 1.0000 20 DTL3_RS00450 1.0000 20 DTL3_RS00460 1.0000 20 DTL3_RS00470 1.0000 20 DTL3_RS00475 1.0000 20 DTL3_RS00480 1.0000 20 DTL3_RS00490 1.0000 20 DTL3_RS00495 1.0000 20 DTL3_RS00500 1.0000 20 DTL3_RS00510 1.0000 20 DTL3_RS00515 1.0000 20 DTL3_RS00520 1.0000 20 DTL3_RS00525 1.0000 20 DTL3_RS00530 1.0000 20 DTL3_RS00535 1.0000 20 DTL3_RS00540 1.0000 20 DTL3_RS00545 1.0000 20 DTL3_RS00550 1.0000 20 DTL3_RS00555 1.0000 20 DTL3_RS00565 1.0000 20 DTL3_RS00570 1.0000 20 DTL3_RS00575 1.0000 20 DTL3_RS00580 1.0000 20 DTL3_RS00585 1.0000 20 DTL3_RS00590 1.0000 20 DTL3_RS00595 1.0000 20 DTL3_RS00635 1.0000 20 DTL3_RS00645 1.0000 20 DTL3_RS00650 1.0000 20 DTL3_RS00655 1.0000 20 DTL3_RS00660 1.0000 20 DTL3_RS00665 1.0000 20 DTL3_RS00670 1.0000 20 DTL3_RS00680 1.0000 20 DTL3_RS00685 1.0000 20 16S_rRNA 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme meme_sequences.fasta -dna -minw 5 -maxw 8 -nmotifs 1 model: mod= zoops nmotifs= 1 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 5 maxw= 8 nsites: minsites= 2 maxsites= 101 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 2020 N= 101 sample: seed= 0 hsfrac= 0 searchsize= 2020 norand= no csites= 1000 Letter frequencies in dataset: A 0.42 C 0.0525 G 0.274 T 0.253 Background letter frequencies (from file dataset with add-one prior applied): A 0.419 C 0.0529 G 0.274 T 0.253 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AGGAGR MEME-1 width = 6 sites = 84 llr = 388 E-value = 2.7e-035 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGGAGR MEME-1 Description -------------------------------------------------------------------------------- Simplified A 8::7:3 pos.-specific C :::::: probability G 1aa1a6 matrix T 1::2:1 bits 4.2 3.8 3.4 3.0 Relative 2.5 Entropy 2.1 (6.7 bits) 1.7 ** * 1.3 ** * 0.8 ** * 0.4 ****** 0.0 ------ Multilevel AGGAGG consensus T A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGAGR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------ DTL3_RS00655 8 9.90e-04 AGCCTCA AGGAGG TAGGATT DTL3_RS00645 10 9.90e-04 AAGAAAAAG AGGAGG TTTTC DTL3_RS00590 6 9.90e-04 GAAAA AGGAGG AAATAATCA DTL3_RS00580 8 9.90e-04 TTTGTTG AGGAGG GTGAATG DTL3_RS00570 7 9.90e-04 ACTATA AGGAGG TTCCTGTT DTL3_RS00555 8 9.90e-04 AATGTTG AGGAGG ATATATA DTL3_RS00470 9 9.90e-04 TATTCAAT AGGAGG AAAAAA DTL3_RS00445 4 9.90e-04 AAA AGGAGG AAAATTGTAA DTL3_RS00415 9 9.90e-04 ACATGAGG AGGAGG ATAATA DTL3_RS00405 6 9.90e-04 TAAAT AGGAGG TGTTTTTGT DTL3_RS00395 8 9.90e-04 TTGTCAA AGGAGG AATAGAA DTL3_RS00390 9 9.90e-04 GAAAGTAT AGGAGG AAAATT DTL3_RS00365 7 9.90e-04 TTATAG AGGAGG TGTTTTAT DTL3_RS00340 6 9.90e-04 CACAA AGGAGG AGCTTTATT DTL3_RS00265 8 9.90e-04 TTATGAT AGGAGG AAATCAT DTL3_RS00250 6 9.90e-04 ATTGA AGGAGG CTTTTTTAC DTL3_RS00190 8 9.90e-04 AAGTTAA AGGAGG AACATAA DTL3_RS00185 8 9.90e-04 TATGCAA AGGAGG AGTTAAA DTL3_RS00175 8 9.90e-04 TGCACTA AGGAGG AAGCAAT DTL3_RS00170 9 9.90e-04 ATTGAGCT AGGAGG ATAAAA DTL3_RS00135 4 9.90e-04 AGT AGGAGG ATATAATCAT DTL3_RS00105 10 9.90e-04 GAATTCATC AGGAGG AATAT DTL3_RS00090 9 9.90e-04 ATAGCTTT AGGAGG GTTATT DTL3_RS00085 11 9.90e-04 GAATTACTAA AGGAGG AAAT DTL3_RS00075 8 9.90e-04 AAAATCA AGGAGG TTATTAT DTL3_RS00060 5 9.90e-04 TTTT AGGAGG TGTATCTTTG DTL3_RS00015 7 9.90e-04 ACAAGA AGGAGG GATAATTA DTL3_RS00010 8 9.90e-04 AGTAGAA AGGAGG GAATCAA DTL3_RS00665 9 1.59e-03 GGAGGAAG AGGTGG ATTTTA DTL3_RS00510 8 1.59e-03 AGTTAAG AGGTGG GGTTCTA DTL3_RS00635 8 3.10e-03 ATCTGAT AGGAGA GATTTTA DTL3_RS00585 8 3.10e-03 TTTTGAA AGGAGA TGAAAAT DTL3_RS00530 6 3.10e-03 CGAGA AGGAGA TGAATCATA DTL3_RS00490 12 3.10e-03 ATGGGGGAAA AGGAGA CAA DTL3_RS00335 4 3.10e-03 GGA AGGAGA AGTAGTAGAG DTL3_RS00255 9 3.10e-03 TAGTTTAG AGGAGA TTAAGG DTL3_RS00180 12 3.10e-03 TAATATTCGG AGGAGA GTA DTL3_RS00160 8 3.10e-03 AAAAAGT AGGAGA GAAAATT DTL3_RS00125 8 3.10e-03 TGACATA AGGAGA GGTAAAT DTL3_RS00045 6 3.10e-03 AAAAA AGGAGA GGACTGAAA DTL3_RS00595 9 3.75e-03 TTAATTTT AGGGGG TATGTT DTL3_RS00575 6 3.75e-03 ATAAA AGGGGG ATTAATACA DTL3_RS00450 8 3.75e-03 TAGTAAA AGGGGG TTTAAAA DTL3_RS00275 9 3.75e-03 AATAAATA AGGGGG AAACTA DTL3_RS00270 8 3.75e-03 ATTCTTA AGGGGG CTTTTAA DTL3_RS00260 8 3.75e-03 TTAAAAG AGGGGG ATGACAA DTL3_RS00420 9 3.94e-03 AAATTGAA AGGAGC GAAGTT 16S_rRNA 12 4.54e-03 GCGGACCTAG TGGAGG AAA DTL3_RS00545 3 4.54e-03 AG TGGAGG ATTGATCAAA DTL3_RS00520 6 4.54e-03 TATTT TGGAGG TTGGATAAA DTL3_RS00330 9 4.54e-03 AGAATTCA TGGAGG TAATTG DTL3_RS00315 7 4.54e-03 TGAATG TGGAGG AATAAAAA DTL3_RS00210 8 4.54e-03 AAATTTT TGGAGG GAAAATA DTL3_RS00030 7 4.54e-03 AATAAT TGGAGG AATAAAAT DTL3_RS00670 9 6.10e-03 AGAAATAG AGGTGA AAGCCG DTL3_RS00650 8 6.10e-03 AAATAGA GGGAGG AAATAAA DTL3_RS00535 11 6.10e-03 TTTAAATTTA AGGTGA TAAA DTL3_RS00515 11 6.10e-03 AAAAAGTTTG AGGTGA AACA DTL3_RS00500 7 6.10e-03 AAAGAT GGGAGG AATATAAA DTL3_RS00400 10 6.10e-03 GCAGTAAAG AGGTGA TAAAA DTL3_RS00355 9 6.10e-03 GACTTGAG AGGTGA TCAAAA DTL3_RS00345 4 6.10e-03 TGA GGGAGG CGTAATAATT DTL3_RS00300 8 6.10e-03 GCAAATG AGGTGA ATTTAGA DTL3_RS00295 8 6.10e-03 ATAAACA GGGAGG GAGTTTA DTL3_RS00290 9 6.10e-03 ACAACAGT GGGAGG CTTCTT DTL3_RS00280 8 6.10e-03 TTTATCG AGGTGA TTAAATA DTL3_RS00230 9 6.10e-03 TTTCAAAG AGGTGA TTTTTG DTL3_RS00225 9 6.10e-03 AATATAAA AGGTGA TAACTC DTL3_RS00220 9 6.10e-03 AGTTTTTA AGGTGA TAAAAT DTL3_RS00055 6 6.10e-03 AAAGA AGGTGA TCAATAATT DTL3_RS00550 8 7.01e-03 TTATTAA AGGAGT GGGAAAT DTL3_RS00495 8 7.01e-03 ATTTCTA AGGAGT GATTTGC DTL3_RS00200 8 7.01e-03 ACTAAAA AGGAGT AAGAGAA DTL3_RS00035 10 7.01e-03 AGAATTAAA AGGAGT TAAAA DTL3_RS00310 8 8.48e-03 TCTAGAA AGGGGA AGGAATT DTL3_RS00040 4 8.48e-03 AGA AGGGGA TGAAAAAAAA DTL3_RS00680 10 8.87e-03 TTAAAAATG GGGTGG GAAAA DTL3_RS00025 8 8.87e-03 CTTGAAA GGGTGG TTCAAGT DTL3_RS00100 10 9.78e-03 AAGGAAGAC TGGAGA AGAAA DTL3_RS00525 11 1.15e-02 ACATAAAAAG AGGTGT TAAA DTL3_RS00480 8 1.16e-02 TAATAAC AGGGGC GATTTAT DTL3_RS00435 8 1.38e-02 TTTAGAA AGGGGT TATACAT DTL3_RS00660 9 1.46e-02 AATCTATG GGGTGA TAATAA DTL3_RS00325 13 1.60e-02 AATTATTATA ACGAGA AG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGAGR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- DTL3_RS00655 0.00099 7_[+1]_7 DTL3_RS00645 0.00099 9_[+1]_5 DTL3_RS00590 0.00099 5_[+1]_9 DTL3_RS00580 0.00099 7_[+1]_7 DTL3_RS00570 0.00099 6_[+1]_8 DTL3_RS00555 0.00099 7_[+1]_7 DTL3_RS00470 0.00099 8_[+1]_6 DTL3_RS00445 0.00099 3_[+1]_11 DTL3_RS00415 0.00099 8_[+1]_6 DTL3_RS00405 0.00099 5_[+1]_9 DTL3_RS00395 0.00099 7_[+1]_7 DTL3_RS00390 0.00099 8_[+1]_6 DTL3_RS00365 0.00099 6_[+1]_8 DTL3_RS00340 0.00099 5_[+1]_9 DTL3_RS00265 0.00099 7_[+1]_7 DTL3_RS00250 0.00099 5_[+1]_9 DTL3_RS00190 0.00099 7_[+1]_7 DTL3_RS00185 0.00099 7_[+1]_7 DTL3_RS00175 0.00099 7_[+1]_7 DTL3_RS00170 0.00099 8_[+1]_6 DTL3_RS00135 0.00099 3_[+1]_11 DTL3_RS00105 0.00099 9_[+1]_5 DTL3_RS00090 0.00099 8_[+1]_6 DTL3_RS00085 0.00099 10_[+1]_4 DTL3_RS00075 0.00099 7_[+1]_7 DTL3_RS00060 0.00099 4_[+1]_10 DTL3_RS00015 0.00099 6_[+1]_8 DTL3_RS00010 0.00099 7_[+1]_7 DTL3_RS00665 0.0016 8_[+1]_6 DTL3_RS00510 0.0016 7_[+1]_7 DTL3_RS00635 0.0031 7_[+1]_7 DTL3_RS00585 0.0031 7_[+1]_7 DTL3_RS00530 0.0031 5_[+1]_9 DTL3_RS00490 0.0031 11_[+1]_3 DTL3_RS00335 0.0031 3_[+1]_11 DTL3_RS00255 0.0031 8_[+1]_6 DTL3_RS00180 0.0031 11_[+1]_3 DTL3_RS00160 0.0031 7_[+1]_7 DTL3_RS00125 0.0031 7_[+1]_7 DTL3_RS00045 0.0031 5_[+1]_9 DTL3_RS00595 0.0037 8_[+1]_6 DTL3_RS00575 0.0037 5_[+1]_9 DTL3_RS00450 0.0037 7_[+1]_7 DTL3_RS00275 0.0037 8_[+1]_6 DTL3_RS00270 0.0037 7_[+1]_7 DTL3_RS00260 0.0037 7_[+1]_7 DTL3_RS00420 0.0039 8_[+1]_6 16S_rRNA 0.0045 11_[+1]_3 DTL3_RS00545 0.0045 2_[+1]_12 DTL3_RS00520 0.0045 5_[+1]_9 DTL3_RS00330 0.0045 8_[+1]_6 DTL3_RS00315 0.0045 6_[+1]_8 DTL3_RS00210 0.0045 7_[+1]_7 DTL3_RS00030 0.0045 6_[+1]_8 DTL3_RS00670 0.0061 8_[+1]_6 DTL3_RS00650 0.0061 7_[+1]_7 DTL3_RS00535 0.0061 10_[+1]_4 DTL3_RS00515 0.0061 10_[+1]_4 DTL3_RS00500 0.0061 6_[+1]_8 DTL3_RS00400 0.0061 9_[+1]_5 DTL3_RS00355 0.0061 8_[+1]_6 DTL3_RS00345 0.0061 3_[+1]_11 DTL3_RS00300 0.0061 7_[+1]_7 DTL3_RS00295 0.0061 7_[+1]_7 DTL3_RS00290 0.0061 8_[+1]_6 DTL3_RS00280 0.0061 7_[+1]_7 DTL3_RS00230 0.0061 8_[+1]_6 DTL3_RS00225 0.0061 8_[+1]_6 DTL3_RS00220 0.0061 8_[+1]_6 DTL3_RS00055 0.0061 5_[+1]_9 DTL3_RS00550 0.007 7_[+1]_7 DTL3_RS00495 0.007 7_[+1]_7 DTL3_RS00200 0.007 7_[+1]_7 DTL3_RS00035 0.007 9_[+1]_5 DTL3_RS00310 0.0085 7_[+1]_7 DTL3_RS00040 0.0085 3_[+1]_11 DTL3_RS00680 0.0089 9_[+1]_5 DTL3_RS00025 0.0089 7_[+1]_7 DTL3_RS00100 0.0098 9_[+1]_5 DTL3_RS00525 0.012 10_[+1]_4 DTL3_RS00480 0.012 7_[+1]_7 DTL3_RS00435 0.014 7_[+1]_7 DTL3_RS00660 0.015 8_[+1]_6 DTL3_RS00325 0.016 12_[+1]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGAGR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGGAGR width=6 seqs=84 DTL3_RS00655 ( 8) AGGAGG 1 DTL3_RS00645 ( 10) AGGAGG 1 DTL3_RS00590 ( 6) AGGAGG 1 DTL3_RS00580 ( 8) AGGAGG 1 DTL3_RS00570 ( 7) AGGAGG 1 DTL3_RS00555 ( 8) AGGAGG 1 DTL3_RS00470 ( 9) AGGAGG 1 DTL3_RS00445 ( 4) AGGAGG 1 DTL3_RS00415 ( 9) AGGAGG 1 DTL3_RS00405 ( 6) AGGAGG 1 DTL3_RS00395 ( 8) AGGAGG 1 DTL3_RS00390 ( 9) AGGAGG 1 DTL3_RS00365 ( 7) AGGAGG 1 DTL3_RS00340 ( 6) AGGAGG 1 DTL3_RS00265 ( 8) AGGAGG 1 DTL3_RS00250 ( 6) AGGAGG 1 DTL3_RS00190 ( 8) AGGAGG 1 DTL3_RS00185 ( 8) AGGAGG 1 DTL3_RS00175 ( 8) AGGAGG 1 DTL3_RS00170 ( 9) AGGAGG 1 DTL3_RS00135 ( 4) AGGAGG 1 DTL3_RS00105 ( 10) AGGAGG 1 DTL3_RS00090 ( 9) AGGAGG 1 DTL3_RS00085 ( 11) AGGAGG 1 DTL3_RS00075 ( 8) AGGAGG 1 DTL3_RS00060 ( 5) AGGAGG 1 DTL3_RS00015 ( 7) AGGAGG 1 DTL3_RS00010 ( 8) AGGAGG 1 DTL3_RS00665 ( 9) AGGTGG 1 DTL3_RS00510 ( 8) AGGTGG 1 DTL3_RS00635 ( 8) AGGAGA 1 DTL3_RS00585 ( 8) AGGAGA 1 DTL3_RS00530 ( 6) AGGAGA 1 DTL3_RS00490 ( 12) AGGAGA 1 DTL3_RS00335 ( 4) AGGAGA 1 DTL3_RS00255 ( 9) AGGAGA 1 DTL3_RS00180 ( 12) AGGAGA 1 DTL3_RS00160 ( 8) AGGAGA 1 DTL3_RS00125 ( 8) AGGAGA 1 DTL3_RS00045 ( 6) AGGAGA 1 DTL3_RS00595 ( 9) AGGGGG 1 DTL3_RS00575 ( 6) AGGGGG 1 DTL3_RS00450 ( 8) AGGGGG 1 DTL3_RS00275 ( 9) AGGGGG 1 DTL3_RS00270 ( 8) AGGGGG 1 DTL3_RS00260 ( 8) AGGGGG 1 DTL3_RS00420 ( 9) AGGAGC 1 16S_rRNA ( 12) TGGAGG 1 DTL3_RS00545 ( 3) TGGAGG 1 DTL3_RS00520 ( 6) TGGAGG 1 DTL3_RS00330 ( 9) TGGAGG 1 DTL3_RS00315 ( 7) TGGAGG 1 DTL3_RS00210 ( 8) TGGAGG 1 DTL3_RS00030 ( 7) TGGAGG 1 DTL3_RS00670 ( 9) AGGTGA 1 DTL3_RS00650 ( 8) GGGAGG 1 DTL3_RS00535 ( 11) AGGTGA 1 DTL3_RS00515 ( 11) AGGTGA 1 DTL3_RS00500 ( 7) GGGAGG 1 DTL3_RS00400 ( 10) AGGTGA 1 DTL3_RS00355 ( 9) AGGTGA 1 DTL3_RS00345 ( 4) GGGAGG 1 DTL3_RS00300 ( 8) AGGTGA 1 DTL3_RS00295 ( 8) GGGAGG 1 DTL3_RS00290 ( 9) GGGAGG 1 DTL3_RS00280 ( 8) AGGTGA 1 DTL3_RS00230 ( 9) AGGTGA 1 DTL3_RS00225 ( 9) AGGTGA 1 DTL3_RS00220 ( 9) AGGTGA 1 DTL3_RS00055 ( 6) AGGTGA 1 DTL3_RS00550 ( 8) AGGAGT 1 DTL3_RS00495 ( 8) AGGAGT 1 DTL3_RS00200 ( 8) AGGAGT 1 DTL3_RS00035 ( 10) AGGAGT 1 DTL3_RS00310 ( 8) AGGGGA 1 DTL3_RS00040 ( 4) AGGGGA 1 DTL3_RS00680 ( 10) GGGTGG 1 DTL3_RS00025 ( 8) GGGTGG 1 DTL3_RS00100 ( 10) TGGAGA 1 DTL3_RS00525 ( 11) AGGTGT 1 DTL3_RS00480 ( 8) AGGGGC 1 DTL3_RS00435 ( 8) AGGGGT 1 DTL3_RS00660 ( 9) GGGTGA 1 DTL3_RS00325 ( 13) ACGAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGAGR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 6 n= 1515 bayes= 4.41139 E= 2.7e-035 95 -1304 -153 -141 -1304 -215 185 -1304 -1304 -1304 187 -1304 69 -1304 -120 -32 -1304 -1304 187 -1304 -44 -115 112 -183 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGAGR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 6 nsites= 84 E= 2.7e-035 0.809524 0.000000 0.095238 0.095238 0.000000 0.011905 0.988095 0.000000 0.000000 0.000000 1.000000 0.000000 0.678571 0.000000 0.119048 0.202381 0.000000 0.000000 1.000000 0.000000 0.309524 0.023810 0.595238 0.071429 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGAGR MEME-1 regular expression -------------------------------------------------------------------------------- AGG[AT]G[GA] -------------------------------------------------------------------------------- Time 0.58 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- DTL3_RS00010 1.47e-02 20 DTL3_RS00015 1.47e-02 20 DTL3_RS00020 1.00e+00 20 DTL3_RS00025 1.25e-01 20 DTL3_RS00030 6.59e-02 20 DTL3_RS00035 1.00e-01 20 DTL3_RS00040 1.20e-01 20 DTL3_RS00045 4.55e-02 20 DTL3_RS00050 8.97e-01 20 DTL3_RS00055 8.76e-02 20 DTL3_RS00060 1.47e-02 20 DTL3_RS00075 1.47e-02 20 DTL3_RS00080 3.65e-01 20 DTL3_RS00085 1.47e-02 20 DTL3_RS00090 1.47e-02 20 DTL3_RS00095 5.14e-01 20 DTL3_RS00100 1.37e-01 20 DTL3_RS00105 1.47e-02 20 DTL3_RS00125 4.55e-02 20 DTL3_RS00130 7.93e-01 20 DTL3_RS00135 1.47e-02 20 DTL3_RS00155 6.67e-01 20 DTL3_RS00160 4.55e-02 20 DTL3_RS00170 1.47e-02 20 DTL3_RS00175 1.47e-02 20 DTL3_RS00180 4.55e-02 20 DTL3_RS00185 1.47e-02 20 DTL3_RS00190 1.47e-02 20 DTL3_RS00200 1.00e-01 20 DTL3_RS00210 6.59e-02 20 DTL3_RS00215 6.67e-01 20 DTL3_RS00220 8.76e-02 20 DTL3_RS00225 8.76e-02 20 DTL3_RS00230 8.76e-02 20 DTL3_RS00235 7.04e-01 20 DTL3_RS00250 1.47e-02 20 DTL3_RS00255 4.55e-02 20 DTL3_RS00260 5.48e-02 20 DTL3_RS00265 1.47e-02 20 DTL3_RS00270 5.48e-02 20 DTL3_RS00275 5.48e-02 20 DTL3_RS00280 8.76e-02 20 DTL3_RS00290 8.76e-02 20 DTL3_RS00295 8.76e-02 20 DTL3_RS00300 8.76e-02 20 DTL3_RS00310 1.20e-01 20 DTL3_RS00315 6.59e-02 20 DTL3_RS00320 9.94e-01 20 DTL3_RS00325 2.15e-01 20 DTL3_RS00330 6.59e-02 20 DTL3_RS00335 4.55e-02 20 DTL3_RS00340 1.47e-02 20 DTL3_RS00345 8.76e-02 20 DTL3_RS00350 8.33e-01 20 DTL3_RS00355 8.76e-02 20 DTL3_RS00365 1.47e-02 20 DTL3_RS00385 9.69e-01 20 DTL3_RS00390 1.47e-02 20 DTL3_RS00395 1.47e-02 20 DTL3_RS00400 8.76e-02 20 DTL3_RS00405 1.47e-02 20 DTL3_RS00415 1.47e-02 20 DTL3_RS00420 5.75e-02 20 DTL3_RS00435 1.89e-01 20 DTL3_RS00440 3.65e-01 20 DTL3_RS00445 1.47e-02 20 DTL3_RS00450 5.48e-02 20 DTL3_RS00460 5.14e-01 20 DTL3_RS00470 1.47e-02 20 DTL3_RS00475 6.67e-01 20 DTL3_RS00480 1.61e-01 20 DTL3_RS00490 4.55e-02 20 DTL3_RS00495 1.00e-01 20 DTL3_RS00500 8.76e-02 20 DTL3_RS00510 2.35e-02 20 DTL3_RS00515 8.76e-02 20 DTL3_RS00520 6.59e-02 20 DTL3_RS00525 1.59e-01 20 DTL3_RS00530 4.55e-02 20 DTL3_RS00535 8.76e-02 20 DTL3_RS00540 7.93e-01 20 DTL3_RS00545 6.59e-02 20 DTL3_RS00550 1.00e-01 20 DTL3_RS00555 1.47e-02 20 DTL3_RS00565 7.55e-01 20 DTL3_RS00570 1.47e-02 20 DTL3_RS00575 5.48e-02 20 DTL3_RS00580 1.47e-02 20 DTL3_RS00585 4.55e-02 20 DTL3_RS00590 1.47e-02 20 DTL3_RS00595 5.48e-02 20 DTL3_RS00635 4.55e-02 20 DTL3_RS00645 1.47e-02 20 DTL3_RS00650 8.76e-02 20 DTL3_RS00655 1.47e-02 20 DTL3_RS00660 1.97e-01 20 DTL3_RS00665 2.35e-02 20 DTL3_RS00670 8.76e-02 20 DTL3_RS00680 1.25e-01 20 DTL3_RS00685 5.14e-01 20 16S_rRNA 6.59e-02 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (1) found. ******************************************************************************** CPU: kodomo ********************************************************************************