Задание 1:
Ссылки на скачивание:
gatc-a.pdb
gatc-b.pdb
gatc-z.pdb
Задание 2:
В сторону большой бороздки обращены атомы: 13/N7, 13/C5, 13/C6, 13/O6, 13/N1.
В сторону малой бороздки обращены атомы: 13/N9, 13/C4, 13/N3, 13/C2, 13/N2.
Форма ДНК | Тип спирали (правая или левая) | Шаг спирали (Å) | Число оснований на виток | Ширина большой бороздки | Ширина малой бороздки |
A-форма | Правая | 28,9 | 11 | 13,3 (dist /3v9d/A/A/DG`5/P, /3v9d/B/B/DC`3/P) | 15,8 (dist /3v9d/B/B/DC`9/P, /3v9d/A/A/DC`10/P) |
B-форма | Правая | 32,0 | 11 | 18,9 (dist /1bna/A/A/DG`4/P, /1bna/B/B/DG`16/P) | 12,8 (dist /1bna/B/B/DG`22/P, /1bna/A/A/DT`8/P) |
Z-форма | Левая | 20,8 | 6 | 11,0 (dist /1tne/A/A/DG`6/P, /1tne/B/B/DG`12/P) | 6,5 (dist /1tne/B/B/DC`9/P, /1tne/B/B/DG`8/P) |
Задание 3:
Тяжи этой РНК больше всего похожи на A-форму ДНК.
Координаты стеблей:
Strand I Strand II Helix 1 (0.004) ....>C:.501_:[..G]G-----C[..C]:.572_:C<.... (0.005) | 2 (0.007) ....>C:.502_:[..G]G-*---U[..U]:.571_:C<.... (0.008) | 3 (0.003) ....>C:.503_:[..C]C-----G[..G]:.570_:C<.... (0.003) | 4 (0.003) ....>C:.504_:[..C]C-----G[..G]:.569_:C<.... (0.007) | 5 (0.005) ....>C:.505_:[..C]C-----G[..G]:.568_:C<.... (0.009) | 6 (0.005) ....>C:.506_:[..C]C-----G[..G]:.567_:C<.... (0.003) | 7 (0.004) ....>C:.507_:[..A]A-----U[..U]:.566_:C<.... (0.006) | 8 (0.004) ....>C:.549_:[..G]G-----C[..C]:.565_:C<.... (0.002) | 9 (0.001) ....>C:.550_:[..G]G-----C[..C]:.564_:C<.... (0.003) | 10 (0.007) ....>C:.551_:[..G]G-----C[..C]:.563_:C<.... (0.002) | 11 (0.003) ....>C:.552_:[..G]G-----C[..C]:.562_:C<.... (0.003) | 12 (0.005) ....>C:.553_:[..G]G-----C[..C]:.561_:C<.... (0.004) | 13 (0.003) ....>C:.554_:[..U]U-**--A[..A]:.558_:C<.... (0.008) | 14 (0.003) ....>C:.555_:[..U]U-**+-G[..G]:.518_:C<.... (0.003) x 15 (0.003) ....>C:.538_:[..A]A-**--C[..C]:.532_:C<.... (0.005) | 16 (0.005) ....>C:.539_:[..G]G-----C[..C]:.531_:C<.... (0.004) | 17 (0.003) ....>C:.540_:[..G]G-----C[..C]:.530_:C<.... (0.004) | 18 (0.005) ....>C:.541_:[..C]C-----G[..G]:.529_:C<.... (0.005) | 19 (0.004) ....>C:.542_:[..C]C-----G[..G]:.528_:C<.... (0.005) | 20 (0.006) ....>C:.543_:[..G]G-----C[..C]:.527_:C<.... (0.003) | 21 (0.005) ....>C:.544_:[..A]A-**--G[..G]:.526_:C<.... (0.004) | 22 (0.006) ....>C:.510_:[..G]G-----C[..C]:.525_:C<.... (0.004) | 23 (0.004) ....>C:.511_:[..U]U-----A[..A]:.524_:C<.... (0.003) | 24 (0.002) ....>C:.512_:[..C]C-----G[..G]:.523_:C<.... (0.011) | 25 (0.004) ....>C:.513_:[..U]U-*---G[..G]:.522_:C<.... (0.007) | 26 (0.004) ....>C:.508_:[..U]U-**--A[..A]:.546_:C<.... (0.003) | 27 (0.007) ....>C:.514_:[..A]A-**--A[..A]:.521_:C<.... (0.005) | 28 (0.018) ....>C:.515_:[..G]G-**+-C[..C]:.548_:C<.... (0.012) x 29 (0.004) ....>C:.519_:[..G]G-----C[..C]:.556_:C<.... (0.002) + 30 (0.007) ....>D:.501_:[..G]G-----C[..C]:.572_:D<.... (0.006) | 31 (0.007) ....>D:.502_:[..G]G-*---U[..U]:.571_:D<.... (0.003) | 32 (0.004) ....>D:.503_:[..C]C-----G[..G]:.570_:D<.... (0.006) | 33 (0.003) ....>D:.504_:[..C]C-----G[..G]:.569_:D<.... (0.006) | 34 (0.005) ....>D:.505_:[..C]C-----G[..G]:.568_:D<.... (0.010) | 35 (0.005) ....>D:.506_:[..C]C-----G[..G]:.567_:D<.... (0.004) | 36 (0.005) ....>D:.507_:[..A]A-----U[..U]:.566_:D<.... (0.005) | 37 (0.003) ....>D:.549_:[..G]G-----C[..C]:.565_:D<.... (0.005) | 38 (0.004) ....>D:.550_:[..G]G-----C[..C]:.564_:D<.... (0.002) | 39 (0.004) ....>D:.551_:[..G]G-----C[..C]:.563_:D<.... (0.002) | 40 (0.005) ....>D:.552_:[..G]G-----C[..C]:.562_:D<.... (0.001) | 41 (0.003) ....>D:.553_:[..G]G-----C[..C]:.561_:D<.... (0.004) | 42 (0.002) ....>D:.554_:[..U]U-**--A[..A]:.558_:D<.... (0.009) | 43 (0.003) ....>D:.555_:[..U]U-**+-G[..G]:.518_:D<.... (0.006) x 44 (0.004) ....>D:.538_:[..A]A-**--C[..C]:.532_:D<.... (0.004) | 45 (0.008) ....>D:.539_:[..G]G-----C[..C]:.531_:D<.... (0.008) | 46 (0.004) ....>D:.540_:[..G]G-----C[..C]:.530_:D<.... (0.004) | 47 (0.005) ....>D:.541_:[..C]C-----G[..G]:.529_:D<.... (0.006) | 48 (0.004) ....>D:.542_:[..C]C-----G[..G]:.528_:D<.... (0.005) | 49 (0.004) ....>D:.543_:[..G]G-----C[..C]:.527_:D<.... (0.006) | 50 (0.009) ....>D:.544_:[..A]A-**--G[..G]:.526_:D<.... (0.011) | 51 (0.004) ....>D:.510_:[..G]G-----C[..C]:.525_:D<.... (0.005) | 52 (0.003) ....>D:.511_:[..U]U-----A[..A]:.524_:D<.... (0.006) | 53 (0.003) ....>D:.512_:[..C]C-----G[..G]:.523_:D<.... (0.005) | 54 (0.004) ....>D:.513_:[..U]U-*---G[..G]:.522_:D<.... (0.010) | 55 (0.004) ....>D:.508_:[..U]U-**--A[..A]:.546_:D<.... (0.003) | 56 (0.007) ....>D:.514_:[..A]A-**--A[..A]:.521_:D<.... (0.005) | 57 (0.016) ....>D:.515_:[..G]G-**+-C[..C]:.548_:D<.... (0.007) x 58 (0.004) ....>D:.519_:[..G]G-----C[..C]:.556_:D<.... (0.003) + |
Strand I Strand II Chain C: 501-507 566-572 549-553 561-565 538-544 526-532 510-513 522-525 Chain D: 501-507 566-572 549-553 561-565 538-544 526-532 510-513 522-525
2 [..G]G-*---U[..U] 13 [..U]U-**--A[..A] 14 [..U]U-**+-G[..G] 15 [..A]A-**--C[..C] 21 [..A]A-**--G[..G] 25 [..U]U-*---G[..G] 26 [..U]U-**--A[..A] 27 [..A]A-**--A[..A] 28 [..G]G-**+-C[..C] 31 [..G]G-*---U[..U] 42 [..U]U-**--A[..A] 43 [..U]U-**+-G[..G] 44 [..A]A-**--C[..C] 50 [..A]A-**--G[..G] 54 [..U]U-*---G[..G] 55 [..U]U-**--A[..A] 56 [..A]A-**--A[..A] 57 [..G]G-**+-C[..C]Дополнительные водородные связи, стабилизирующие третичную структуру тРНК:
58 (0.004) ....>D:.519_:[..G]G-----C[..C]:.556_:D<.... (0.003)Назад