RID: 0UNJAYDH016 Job Title:Protein Sequence Program: BLASTP Database: swissprot Non-redundant UniProtKB/SwissProt sequences Query #1: Query ID: lcl|Query_8987753 Length: 202 Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab... Lactate dehy... NA 300016 412 412 100% 4e-132 100.00 3616 Q83017.2 RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab... Lactate dehy... NA 300015 353 353 100% 2e-111 86.14 3637 Q06502.2 RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab... PRRSV SD 01-08 NA 857306 176 176 100% 1e-49 44.83 3838 A0MD28.2 RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab... Lelystad virus NA 11049 175 175 100% 2e-49 45.32 3855 Q04561.3 RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab... PRRSV 16244B NA 300561 169 169 100% 2e-47 45.59 3961 Q9YN02.3 RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab... PRRSV VR2332 NA 300559 169 169 100% 2e-47 45.59 3960 Q9WJB2.2 RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab... PRRSV HB-1(s... NA 300563 166 166 100% 4e-46 45.10 3961 Q8B912.3 RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab... Porcine repr... NA 28344 165 165 100% 7e-46 45.10 3931 A6YQT5.2 RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab... Simian hemor... NA 38143 110 110 98% 1e-26 39.20 3595 Q68772.4 Alignments: >RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Nsp1-alpha papain-like cysteine proteinase; AltName: Full=PCP1-alpha; Contains: RecName: Full=Nsp1-beta papain-like cysteine proteinase; AltName: Full=PCP1-beta; Contains: RecName: Full=Nsp2 cysteine proteinase; AltName: Full=CP2; Short=CP; Contains: RecName: Full=Non-structural protein 3; Short=Nsp3; Contains: RecName: Full=3C-like serine proteinase; Short=3CLSP; AltName: Full=Nsp4; Contains: RecName: Full=Non-structural protein 5-6-7; Short=Nsp5-6-7; Contains: RecName: Full=Non-structural protein 5; Short=Nsp5; Contains: RecName: Full=Non-structural protein 6; Short=Nsp6; Contains: RecName: Full=Non-structural protein 7-alpha; Short=Nsp7-alpha; Contains: RecName: Full=Non-structural protein 7-beta; Short=Nsp7-beta; Contains: RecName: Full=Non-structural protein 8; Short=Nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=Nsp9; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=Nsp10; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp11; AltName: Full=Non-structural protein 11; Short=Nsp11; Contains: RecName: Full=Non-structural protein 12; Short=Nsp12 [Lactate dehydrogenase elevating virus Plagemann] Sequence ID: Q83017.2 Length: 3616 Range 1: 1513 to 1714 Score:412 bits(1058), Expect:4e-132, Method:Compositional matrix adjust., Identities:202/202(100%), Positives:202/202(100%), Gaps:0/202(0%) Query 1 GSLRTRGCAKNVVSVFGSASGSGGVFTIHGNPVVVTATHLLSDGKARVSCVGFSQCLTFK 60 GSLRTRGCAKNVVSVFGSASGSGGVFTIHGNPVVVTATHLLSDGKARVSCVGFSQCLTFK Sbjct 1513 GSLRTRGCAKNVVSVFGSASGSGGVFTIHGNPVVVTATHLLSDGKARVSCVGFSQCLTFK 1572 Query 61 SVGDYAFARVAEWKGDAPKVELSDRRGRAYCSPQVEWSLVLLGPNTAFCFTKCGDSGSPV 120 SVGDYAFARVAEWKGDAPKVELSDRRGRAYCSPQVEWSLVLLGPNTAFCFTKCGDSGSPV Sbjct 1573 SVGDYAFARVAEWKGDAPKVELSDRRGRAYCSPQVEWSLVLLGPNTAFCFTKCGDSGSPV 1632 Query 121 VDEDGNLIGVHTGSNKRGSGMITTHNGKTLGMSNVKLSEMCQHYGGSGVPVSTVRLPKHL 180 VDEDGNLIGVHTGSNKRGSGMITTHNGKTLGMSNVKLSEMCQHYGGSGVPVSTVRLPKHL Sbjct 1633 VDEDGNLIGVHTGSNKRGSGMITTHNGKTLGMSNVKLSEMCQHYGGSGVPVSTVRLPKHL 1692 Query 181 IVDVEAVASDLVAVVESLPTPE 202 IVDVEAVASDLVAVVESLPTPE Sbjct 1693 IVDVEAVASDLVAVVESLPTPE 1714 >RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Nsp1-alpha papain-like cysteine proteinase; AltName: Full=PCP1-alpha; Contains: RecName: Full=Nsp1-beta papain-like cysteine proteinase; AltName: Full=PCP1-beta; Contains: RecName: Full=Nsp2 cysteine proteinase; AltName: Full=CP2; Short=CP; Contains: RecName: Full=Non-structural protein 3; Short=Nsp3; Contains: RecName: Full=3C-like serine proteinase; Short=3CLSP; AltName: Full=Nsp4; Contains: RecName: Full=Non-structural protein 5-6-7; Short=Nsp5-6-7; Contains: RecName: Full=Non-structural protein 5; Short=Nsp5; Contains: RecName: Full=Non-structural protein 6; Short=Nsp6; Contains: RecName: Full=Non-structural protein 7-alpha; Short=Nsp7-alpha; Contains: RecName: Full=Non-structural protein 7-beta; Short=Nsp7-beta; Contains: RecName: Full=Non-structural protein 8; Short=Nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=Nsp9; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=Nsp10; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp11; AltName: Full=Non-structural protein 11; Short=Nsp11; Contains: RecName: Full=Non-structural protein 12; Short=Nsp12 [Lactate dehydrogenase elevating virus C] Sequence ID: Q06502.2 Length: 3637 Range 1: 1511 to 1712 Score:353 bits(905), Expect:2e-111, Method:Compositional matrix adjust., Identities:174/202(86%), Positives:184/202(91%), Gaps:0/202(0%) Query 1 GSLRTRGCAKNVVSVFGSASGSGGVFTIHGNPVVVTATHLLSDGKARVSCVGFSQCLTFK 60 GSLRTRGCAKNVVSVFGSASGSGGVFTI+GNPVVVTA+HLLSDGKARVSCVGFSQCL FK Sbjct 1511 GSLRTRGCAKNVVSVFGSASGSGGVFTINGNPVVVTASHLLSDGKARVSCVGFSQCLDFK 1570 Query 61 SVGDYAFARVAEWKGDAPKVELSDRRGRAYCSPQVEWSLVLLGPNTAFCFTKCGDSGSPV 120 GDYAFARVA WKGDAPK ELS RRGRAYCSP V SL LLG N+AFCFTKCGDSGSPV Sbjct 1571 CAGDYAFARVANWKGDAPKAELSHRRGRAYCSPLVGLSLDLLGKNSAFCFTKCGDSGSPV 1630 Query 121 VDEDGNLIGVHTGSNKRGSGMITTHNGKTLGMSNVKLSEMCQHYGGSGVPVSTVRLPKHL 180 VDEDGNL+G+HTGSNKRGSGM+TTH GKTLGM+NVKLSEMC HY G GVPVSTV+LPKHL Sbjct 1631 VDEDGNLLGIHTGSNKRGSGMVTTHGGKTLGMANVKLSEMCPHYSGPGVPVSTVKLPKHL 1690 Query 181 IVDVEAVASDLVAVVESLPTPE 202 +VDVE V+SDLVAVVESLP E Sbjct 1691 VVDVETVSSDLVAVVESLPALE 1712 >RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Nsp1; Contains: RecName: Full=Nsp1-alpha papain-like cysteine proteinase; AltName: Full=PCP1-alpha; Contains: RecName: Full=Nsp1-beta papain-like cysteine proteinase; AltName: Full=PCP1-beta; Contains: RecName: Full=Nsp2 cysteine proteinase; AltName: Full=CP2; Short=CP; Contains: RecName: Full=Non-structural protein 3; Short=Nsp3; Contains: RecName: Full=Serine protease nsp4; Short=3CLSP; AltName: Full=3C-like serine proteinase; AltName: Full=Nsp4; Contains: RecName: Full=Non-structural protein 5-6-7; Short=Nsp5-6-7; Contains: RecName: Full=Non-structural protein 5; Short=Nsp5; Contains: RecName: Full=Non-structural protein 6; Short=Nsp6; Contains: RecName: Full=Non-structural protein 7-alpha; Short=Nsp7-alpha; Contains: RecName: Full=Non-structural protein 7-beta; Short=Nsp7-beta; Contains: RecName: Full=Non-structural protein 8; Short=Nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=Nsp9; Contains: RecName: Full=Helicase nsp10; Short=Hel; AltName: Full=Nsp10; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp11; AltName: Full=Non-structural protein 11; Short=Nsp11; Contains: RecName: Full=Non-structural protein 12; Short=Nsp12 [PRRSV SD 01-08] Sequence ID: A0MD28.2 Length: 3838 Range 1: 1677 to 1879 Score:176 bits(445), Expect:1e-49, Method:Compositional matrix adjust., Identities:91/203(45%), Positives:132/203(65%), Gaps:1/203(0%) Query 1 GSLRTRGCAKNVVSVFGSASGSGGVFTIHGNPVVVTATHLLSDGKARVSCVGFSQCLTFK 60 G+ RT N V+V GS+ GSGGVFTI G VVTA H+L+ ARV+ +++ TFK Sbjct 1677 GAFRTHKPCLNTVNVVGSSLGSGGVFTIDGRKTVVTAAHVLNGDTARVTGDSYNRMHTFK 1736 Query 61 SVGDYAFARVAEWKGDAPKVELSD-RRGRAYCSPQVEWSLVLLGPNTAFCFTKCGDSGSP 119 + GDYA++ +W+G AP V+++ RGRAY ++G AFCFT CGDSGSP Sbjct 1737 TSGDYAWSHADDWQGVAPVVKVAKGYRGRAYWQTSTGVEPGVIGEGFAFCFTNCGDSGSP 1796 Query 120 VVDEDGNLIGVHTGSNKRGSGMITTHNGKTLGMSNVKLSEMCQHYGGSGVPVSTVRLPKH 179 V+ E G+LIG+HTGSNK GSG++TT G+T + KLS++ +H+ G VP+ ++L Sbjct 1797 VISESGDLIGIHTGSNKLGSGLVTTPEGETCAIKETKLSDLSRHFAGPSVPLGDIKLSPA 1856 Query 180 LIVDVEAVASDLVAVVESLPTPE 202 ++ DV ++ SDL +++ S+P E Sbjct 1857 IVPDVTSIPSDLASLLASVPVME 1879 >RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Nsp1; Contains: RecName: Full=Nsp1-alpha papain-like cysteine proteinase; AltName: Full=PCP1-alpha; Contains: RecName: Full=Nsp1-beta papain-like cysteine proteinase; AltName: Full=PCP1-beta; Contains: RecName: Full=Nsp2 cysteine proteinase; AltName: Full=CP2; Short=CP; Contains: RecName: Full=Non-structural protein 3; Short=Nsp3; Contains: RecName: Full=Serine protease nsp4; Short=3CLSP; AltName: Full=3C-like serine proteinase; AltName: Full=Nsp4; Contains: RecName: Full=Non-structural protein 5-6-7; Short=Nsp5-6-7; Contains: RecName: Full=Non-structural protein 5; Short=Nsp5; Contains: RecName: Full=Non-structural protein 6; Short=Nsp6; Contains: RecName: Full=Non-structural protein 7-alpha; Short=Nsp7-alpha; Contains: RecName: Full=Non-structural protein 7-beta; Short=Nsp7-beta; Contains: RecName: Full=Non-structural protein 8; Short=Nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=Nsp9; Contains: RecName: Full=Helicase nsp10; Short=Hel; AltName: Full=Nsp10; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp11; AltName: Full=Non-structural protein 11; Short=Nsp11; Contains: RecName: Full=Non-structural protein 12; Short=Nsp12 [Lelystad virus] Sequence ID: Q04561.3 Length: 3855 Range 1: 1694 to 1896 Score:175 bits(444), Expect:2e-49, Method:Compositional matrix adjust., Identities:92/203(45%), Positives:132/203(65%), Gaps:1/203(0%) Query 1 GSLRTRGCAKNVVSVFGSASGSGGVFTIHGNPVVVTATHLLSDGKARVSCVGFSQCLTFK 60 G+ RT N V+V GS+ GSGGVFTI G VVTA H+L+ ARV+ +++ TFK Sbjct 1694 GAFRTHKPCLNTVNVVGSSLGSGGVFTIDGRRTVVTAAHVLNGDTARVTGDSYNRMHTFK 1753 Query 61 SVGDYAFARVAEWKGDAPKVELSD-RRGRAYCSPQVEWSLVLLGPNTAFCFTKCGDSGSP 119 + GDYA++ +W+G AP V+++ RGRAY ++G AFCFT CGDSGSP Sbjct 1754 TNGDYAWSHADDWQGVAPVVKVAKGYRGRAYWQTSTGVEPGIIGEGFAFCFTNCGDSGSP 1813 Query 120 VVDEDGNLIGVHTGSNKRGSGMITTHNGKTLGMSNVKLSEMCQHYGGSGVPVSTVRLPKH 179 V+ E G+LIG+HTGSNK GSG++TT G+T + KLS++ +H+ G VP+ ++L Sbjct 1814 VISESGDLIGIHTGSNKLGSGLVTTPEGETCTIKETKLSDLSRHFAGPSVPLGDIKLSPA 1873 Query 180 LIVDVEAVASDLVAVVESLPTPE 202 +I DV ++ SDL +++ S+P E Sbjct 1874 IIPDVTSIPSDLASLLASVPVVE 1896 >RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Nsp1; Contains: RecName: Full=Nsp1-alpha papain-like cysteine proteinase; AltName: Full=PCP1-alpha; Contains: RecName: Full=Nsp1-beta papain-like cysteine proteinase; AltName: Full=PCP1-beta; Contains: RecName: Full=Nsp2 cysteine proteinase; AltName: Full=CP2; Short=CP; Contains: RecName: Full=Non-structural protein 3; Short=Nsp3; Contains: RecName: Full=Serine protease nsp4; Short=3CLSP; AltName: Full=3C-like serine proteinase; AltName: Full=Nsp4; Contains: RecName: Full=Non-structural protein 5-6-7; Short=Nsp5-6-7; Contains: RecName: Full=Non-structural protein 5; Short=Nsp5; Contains: RecName: Full=Non-structural protein 6; Short=Nsp6; Contains: RecName: Full=Non-structural protein 7-alpha; Short=Nsp7-alpha; Contains: RecName: Full=Non-structural protein 7-beta; Short=Nsp7-beta; Contains: RecName: Full=Non-structural protein 8; Short=Nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=Nsp9; Contains: RecName: Full=Helicase nsp10; Short=Hel; AltName: Full=Nsp10; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp11; AltName: Full=Non-structural protein 11; Short=Nsp11; Contains: RecName: Full=Non-structural protein 12; Short=Nsp12 [PRRSV 16244B] Sequence ID: Q9YN02.3 Length: 3961 Range 1: 1810 to 2013 Score:169 bits(429), Expect:2e-47, Method:Compositional matrix adjust., Identities:93/204(46%), Positives:126/204(61%), Gaps:2/204(0%) Query 1 GSLRTRGCAKNVVSVFGSASGSGGVFTIHGNPVVVTATHLLSDGKARVSCVGFSQCLTFK 60 G+ RTR + N V+V GS+ GSGGVFTI G VTA H+L+ ARVS VGF+Q L F Sbjct 1810 GAFRTRKPSLNTVNVIGSSMGSGGVFTIDGKVKCVTAAHVLTGNSARVSGVGFNQMLDFD 1869 Query 61 SVGDYAFARVAEWKGDAPKVEL--SDRRGRAYCSPQVEWSLVLLGPNTAFCFTKCGDSGS 118 GD+A A W+G APK + GRAY ++G AFCFT CGDSGS Sbjct 1870 VKGDFAIADCPNWQGAAPKAQFCADGWTGRAYWLTSSGVEPGVIGKGFAFCFTACGDSGS 1929 Query 119 PVVDEDGNLIGVHTGSNKRGSGMITTHNGKTLGMSNVKLSEMCQHYGGSGVPVSTVRLPK 178 PV+ E G L+GVHTGSNK+G G++T +G+ ++ +KLSE+ + + G VP+ V++ Sbjct 1930 PVITEAGELVGVHTGSNKQGGGIVTRPSGQFCNVAPIKLSELSEFFAGPKVPLGDVKVGS 1989 Query 179 HLIVDVEAVASDLVAVVESLPTPE 202 H+I D+ V SDL A++ + P E Sbjct 1990 HIIKDISEVPSDLCALLAAKPELE 2013 >RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Nsp1; Contains: RecName: Full=Nsp1-alpha papain-like cysteine proteinase; AltName: Full=PCP1-alpha; Contains: RecName: Full=Nsp1-beta papain-like cysteine proteinase; AltName: Full=PCP1-beta; Contains: RecName: Full=Nsp2 cysteine proteinase; AltName: Full=CP2; Short=CP; Contains: RecName: Full=Non-structural protein 3; Short=Nsp3; Contains: RecName: Full=Serine protease nsp4; Short=3CLSP; AltName: Full=3C-like serine proteinase; AltName: Full=Nsp4; Contains: RecName: Full=Non-structural protein 5-6-7; Short=Nsp5-6-7; Contains: RecName: Full=Non-structural protein 5; Short=Nsp5; Contains: RecName: Full=Non-structural protein 6; Short=Nsp6; Contains: RecName: Full=Non-structural protein 7-alpha; Short=Nsp7-alpha; Contains: RecName: Full=Non-structural protein 7-beta; Short=Nsp7-beta; Contains: RecName: Full=Non-structural protein 8; Short=Nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=Nsp9; Contains: RecName: Full=Helicase nsp10; Short=Hel; AltName: Full=Nsp10; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp11; AltName: Full=Non-structural protein 11; Short=Nsp11; Contains: RecName: Full=Non-structural protein 12; Short=Nsp12 [PRRSV VR2332] Sequence ID: Q9WJB2.2 Length: 3960 Range 1: 1810 to 2013 Score:169 bits(429), Expect:2e-47, Method:Compositional matrix adjust., Identities:93/204(46%), Positives:126/204(61%), Gaps:2/204(0%) Query 1 GSLRTRGCAKNVVSVFGSASGSGGVFTIHGNPVVVTATHLLSDGKARVSCVGFSQCLTFK 60 G+ RTR + N V+V GS+ GSGGVFTI G VTA H+L+ ARVS VGF+Q L F Sbjct 1810 GAFRTRKPSLNTVNVIGSSMGSGGVFTIDGKVKCVTAAHVLTGNSARVSGVGFNQMLDFD 1869 Query 61 SVGDYAFARVAEWKGDAPKVELSDR--RGRAYCSPQVEWSLVLLGPNTAFCFTKCGDSGS 118 GD+A A W+G APK + GRAY ++G AFCFT CGDSGS Sbjct 1870 VKGDFAIADCPNWQGAAPKTQFCTDGWTGRAYWLTSSGVEPGVIGKGFAFCFTACGDSGS 1929 Query 119 PVVDEDGNLIGVHTGSNKRGSGMITTHNGKTLGMSNVKLSEMCQHYGGSGVPVSTVRLPK 178 PV+ E G L+GVHTGSNK+G G++T +G+ ++ +KLSE+ + + G VP+ V++ Sbjct 1930 PVITEAGELVGVHTGSNKQGGGIVTRPSGQFCNVAPIKLSELSEFFAGPKVPLGDVKVGS 1989 Query 179 HLIVDVEAVASDLVAVVESLPTPE 202 H+I D+ V SDL A++ + P E Sbjct 1990 HIIKDISEVPSDLCALLAAKPELE 2013 >RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Nsp1; Contains: RecName: Full=Nsp1-alpha papain-like cysteine proteinase; AltName: Full=PCP1-alpha; Contains: RecName: Full=Nsp1-beta papain-like cysteine proteinase; AltName: Full=PCP1-beta; Contains: RecName: Full=Nsp2 cysteine proteinase; AltName: Full=CP2; Short=CP; Contains: RecName: Full=Non-structural protein 3; Short=Nsp3; Contains: RecName: Full=Serine protease nsp4; Short=3CLSP; AltName: Full=3C-like serine proteinase; AltName: Full=Nsp4; Contains: RecName: Full=Non-structural protein 5-6-7; Short=Nsp5-6-7; Contains: RecName: Full=Non-structural protein 5; Short=Nsp5; Contains: RecName: Full=Non-structural protein 6; Short=Nsp6; Contains: RecName: Full=Non-structural protein 7-alpha; Short=Nsp7-alpha; Contains: RecName: Full=Non-structural protein 7-beta; Short=Nsp7-beta; Contains: RecName: Full=Non-structural protein 8; Short=Nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=Nsp9; Contains: RecName: Full=Helicase nsp10; Short=Hel; AltName: Full=Nsp10; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp11; AltName: Full=Non-structural protein 11; Short=Nsp11; Contains: RecName: Full=Non-structural protein 12; Short=Nsp12 [PRRSV HB-1(sh)/2002] Sequence ID: Q8B912.3 Length: 3961 Range 1: 1810 to 2013 Score:166 bits(419), Expect:4e-46, Method:Compositional matrix adjust., Identities:92/204(45%), Positives:126/204(61%), Gaps:2/204(0%) Query 1 GSLRTRGCAKNVVSVFGSASGSGGVFTIHGNPVVVTATHLLSDGKARVSCVGFSQCLTFK 60 G+ RT+ + N V+V GS+ GSGGVFTI G VTA H+L+ ARVS VGF+Q L F Sbjct 1810 GAFRTQKPSLNTVNVVGSSMGSGGVFTIDGKIKCVTAAHVLTGNSARVSGVGFNQMLDFD 1869 Query 61 SVGDYAFARVAEWKGDAPKVELSDR--RGRAYCSPQVEWSLVLLGPNTAFCFTKCGDSGS 118 GD+A A W+G APK + + GRAY ++G AFCFT CGDSGS Sbjct 1870 VKGDFAIADCPNWQGAAPKAQFCEDGWTGRAYWLTSSGVEPGVIGNGFAFCFTACGDSGS 1929 Query 119 PVVDEDGNLIGVHTGSNKRGSGMITTHNGKTLGMSNVKLSEMCQHYGGSGVPVSTVRLPK 178 PV+ E G L+GVHTGSNK+G G++T +G+ ++ +KLSE+ + + G VP+ V++ Sbjct 1930 PVITEAGELVGVHTGSNKQGGGIVTRPSGQFCNVTPIKLSELSEFFAGPKVPLGDVKIGS 1989 Query 179 HLIVDVEAVASDLVAVVESLPTPE 202 H+I D V SDL A++ + P E Sbjct 1990 HIIKDTCEVPSDLCALLAAKPELE 2013 >RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Nsp1; Contains: RecName: Full=Nsp1-alpha papain-like cysteine proteinase; AltName: Full=PCP1-alpha; Contains: RecName: Full=Nsp1-beta papain-like cysteine proteinase; AltName: Full=PCP1-beta; Contains: RecName: Full=Nsp2 cysteine proteinase; AltName: Full=CP2; Short=CP; Contains: RecName: Full=Non-structural protein 3; Short=Nsp3; Contains: RecName: Full=Serine protease nsp4; Short=3CLSP; AltName: Full=3C-like serine proteinase; AltName: Full=Nsp4; Contains: RecName: Full=Non-structural protein 5-6-7; Short=Nsp5-6-7; Contains: RecName: Full=Non-structural protein 5; Short=Nsp5; Contains: RecName: Full=Non-structural protein 6; Short=Nsp6; Contains: RecName: Full=Non-structural protein 7-alpha; Short=Nsp7-alpha; Contains: RecName: Full=Non-structural protein 7-beta; Short=Nsp7-beta; Contains: RecName: Full=Non-structural protein 8; Short=Nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=Nsp9; Contains: RecName: Full=Helicase nsp10; Short=Hel; AltName: Full=Nsp10; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp11; AltName: Full=Non-structural protein 11; Short=Nsp11; Contains: RecName: Full=Non-structural protein 12; Short=Nsp12 [Porcine reproductive and respiratory syndrome virus] Sequence ID: A6YQT5.2 Length: 3931 Range 1: 1780 to 1983 Score:165 bits(417), Expect:7e-46, Method:Compositional matrix adjust., Identities:92/204(45%), Positives:125/204(61%), Gaps:2/204(0%) Query 1 GSLRTRGCAKNVVSVFGSASGSGGVFTIHGNPVVVTATHLLSDGKARVSCVGFSQCLTFK 60 G+ RT+ + N V+V GS+ GSGGVFTI G VTA H+L+ ARVS VGF+Q L F Sbjct 1780 GAFRTQKPSLNTVNVVGSSMGSGGVFTIDGKIKCVTAAHVLTGNSARVSGVGFNQMLDFD 1839 Query 61 SVGDYAFARVAEWKGDAPKVELSDR--RGRAYCSPQVEWSLVLLGPNTAFCFTKCGDSGS 118 GD+A A W+G APK + + GRAY ++G AFCFT CGDSGS Sbjct 1840 VKGDFAIADCPNWQGVAPKAQFCEDGWTGRAYWLTSSGVEPGVIGNGFAFCFTACGDSGS 1899 Query 119 PVVDEDGNLIGVHTGSNKRGSGMITTHNGKTLGMSNVKLSEMCQHYGGSGVPVSTVRLPK 178 PV+ E G L+GVHTGSNK+G G++T +G+ + +KLSE+ + + G VP+ V++ Sbjct 1900 PVITEAGELVGVHTGSNKQGGGIVTRPSGQFCNVKPIKLSELSEFFAGPKVPLGDVKIGS 1959 Query 179 HLIVDVEAVASDLVAVVESLPTPE 202 H+I D V SDL A++ + P E Sbjct 1960 HIIKDTCEVPSDLCALLAAKPELE 1983 >RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Nsp1-alpha papain-like cysteine proteinase; AltName: Full=PCP1-alpha; Contains: RecName: Full=Nsp1-beta papain-like cysteine proteinase; AltName: Full=PCP1-beta; Contains: RecName: Full=Nsp2 cysteine proteinase; AltName: Full=CP2; Short=CP; Contains: RecName: Full=Non-structural protein 3; Short=Nsp3; Contains: RecName: Full=3C-like serine proteinase; Short=3CLSP; AltName: Full=Nsp4; Contains: RecName: Full=Non-structural protein 5-6-7; Short=Nsp5-6-7; Contains: RecName: Full=Non-structural protein 5; Short=Nsp5; Contains: RecName: Full=Non-structural protein 6; Short=Nsp6; Contains: RecName: Full=Non-structural protein 7-alpha; Short=Nsp7-alpha; Contains: RecName: Full=Non-structural protein 7-beta; Short=Nsp7-beta; Contains: RecName: Full=Non-structural protein 8; Short=Nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=Nsp9; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=Nsp10; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp11; AltName: Full=Non-structural protein 11; Short=Nsp11; Contains: RecName: Full=Non-structural protein 12; Short=Nsp12 [Simian hemorrhagic fever virus] Sequence ID: Q68772.4 Length: 3595 Range 1: 1464 to 1659 Score:110 bits(274), Expect:1e-26, Method:Compositional matrix adjust., Identities:78/199(39%), Positives:107/199(53%), Gaps:5/199(2%) Query 1 GSLRTRGCAKNVVSVFGSASGSGGVFTIHGNPVVVTATHLLSDGKARVSCVGFSQCLTFK 60 G LR + A N VSV+G GSGG+F+ N V +TATH+ + KA V G F Sbjct 1464 GLLREKTRASNSVSVYGVTCGSGGLFSDGNNTVCLTATHVCGNNKAVVDYQGTRYEAVFT 1523 Query 61 SVGDYAFARVAEWKGDAPKVELSDRR--GRAYCSPQVEWSLVLLGPNTAFCFTKCGDSGS 118 + GDYA A V G P ++ + + GRAY +G F+ GDSGS Sbjct 1524 TKGDYASA-VVPIPGAFPPLKFAPQSYTGRAYWYANTGVETGFVGTTGCLVFSGPGDSGS 1582 Query 119 PVVDEDGNLIGVHTGSNKRGSGMITTHNGKTLGMSNVKLSEMCQHYGGSGVPVSTVRLPK 178 P++ DG ++GVHTGS+ +GSG TT NG T+ + L EM HY G V V T RLP+ Sbjct 1583 PIITPDGLIVGVHTGSDSKGSGAYTTPNGLTVS-GPLSLKEMGAHYEGPIVDVPT-RLPR 1640 Query 179 HLIVDVEAVASDLVAVVES 197 ++ D ++V L ++ES Sbjct 1641 NVHNDTKSVPQPLARLLES 1659