RID: 0YYKC7DD016 Job Title:tr|A0A0A7RBW6|A0A0A7RBW6_9EURY DNA-directed... Program: BLASTP Query: tr|A0A0A7RBW6|A0A0A7RBW6_9EURY DNA-directed RNA polymerase subunit beta OS=Natribaculum luteum OX=1586232 PE=3 SV=1 ID: lcl|Query_2808776(amino acid) Length: 609 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=DNA-directed RNA polymerase subunit Rpo2C;... Halobacteriu... NA 478009 1070 1070 100% 0.0 84.84 608 B0R8D5.1 RecName: Full=DNA-directed RNA polymerase subunit Rpo2C;... Archaeoglobu... NA 224325 829 829 99% 0.0 66.28 604 O28392.1 RecName: Full=DNA-directed RNA polymerase subunit Rpo2C;... Methanotherm... NA 79930 782 782 99% 0.0 61.46 604 P09845.2 RecName: Full=DNA-directed RNA polymerase subunit Rpo2C;... Methanotherm... NA 187420 781 781 99% 0.0 61.06 603 O27124.1 RecName: Full=DNA-directed RNA polymerase subunit Rpo2; AltNam... Thermococcus... NA 2264 761 761 99% 0.0 60.53 1122 P31814.1 RecName: Full=DNA-directed RNA polymerase subunit Rpo2C;... Methanocaldo... NA 243232 755 755 99% 0.0 59.02 636 Q60181.1 RecName: Full=DNA-directed RNA polymerase subunit Rpo2C;... Methanococcu... NA 406327 741 741 99% 0.0 58.46 611 P41557.2 RecName: Full=DNA-directed RNA polymerase subunit Rpo2; AltNam... Thermoplasma... NA 273075 738 738 99% 0.0 55.49 1195 Q03587.1 RecName: Full=DNA-directed RNA polymerase subunit Rpo2; AltNam... Sulfolobus a... NA 330779 671 671 99% 0.0 52.48 1126 P11513.2 RecName: Full=DNA-directed RNA polymerase subunit Rpo2; AltNam... Saccharolobu... NA 273057 669 669 99% 0.0 53.21 1124 Q980R1.2 RecName: Full=DNA-directed RNA polymerase subunit Rpo2; AltNam... Saccharolobu... NA 523848 667 667 99% 0.0 53.21 1128 B8YB55.2 RecName: Full=DNA-directed RNA polymerase II subunit rpb2;... Dictyosteliu... NA 44689 546 546 99% 0.0 44.64 1170 Q54J75.1 RecName: Full=DNA-directed RNA polymerase II subunit RPB2;... Encephalitoz... NA 284813 543 543 100% 4e-180 43.71 1141 Q8SR75.1 RecName: Full=DNA-directed RNA polymerase II subunit RPB2;... Bos taurus domestic cattle 9913 524 524 98% 2e-172 43.11 1174 A5PJW8.1 RecName: Full=DNA-directed RNA polymerase II subunit RPB2;... Drosophila m... fruit fly 7227 524 524 98% 2e-172 43.63 1176 P08266.2 RecName: Full=DNA-directed RNA polymerase II subunit RPB2;... Mus musculus house mouse 10090 523 523 98% 6e-172 43.07 1174 Q8CFI7.2 RecName: Full=DNA-directed RNA polymerase II subunit RPB2;... Homo sapiens human 9606 522 522 98% 7e-172 43.07 1174 P30876.1 RecName: Full=DNA-directed RNA polymerase II subunit RPB2;... Solanum lyco... tomato 4081 520 520 99% 7e-171 43.02 1191 Q42877.1 RecName: Full=DNA-directed RNA polymerase II subunit RPB2;... Saccharomyce... NA 559292 517 517 98% 3e-169 42.90 1224 P08518.2 RecName: Full=DNA-directed RNA polymerase II subunit 2; AltNam... Arabidopsis ... thale cress 3702 515 515 98% 4e-169 43.04 1188 P38420.2 RecName: Full=DNA-directed RNA polymerase II subunit RPB2;... Meyerozyma g... NA 294746 516 516 99% 6e-169 40.90 1236 A5DHT2.3 RecName: Full=DNA-directed RNA polymerase II subunit RPB2;... Nakaseomyces... NA 284593 516 516 98% 8e-169 41.74 1223 Q6FLD5.1 RecName: Full=DNA-directed RNA polymerase III subunit RPC2;... Schizosaccha... NA 284812 513 513 98% 3e-168 42.86 1165 Q10233.1 RecName: Full=DNA-directed RNA polymerase III subunit RPC2;... Saccharomyce... NA 559292 511 511 98% 6e-168 44.13 1149 P22276.2 RecName: Full=DNA-directed RNA polymerase II subunit RPB2;... Caenorhabdit... NA 6239 512 512 98% 8e-168 42.46 1193 Q10578.2 RecName: Full=DNA-directed RNA polymerase II subunit RPB2;... Eremothecium... NA 284811 510 510 98% 1e-166 40.99 1222 Q753Q4.1 RecName: Full=DNA-directed RNA polymerase II subunit RPB2;... Schizosaccha... NA 284812 497 497 99% 1e-161 40.37 1210 Q02061.2 RecName: Full=DNA-directed RNA polymerase III subunit RPC2;... Mus musculus house mouse 10090 492 492 98% 1e-160 41.64 1133 P59470.2 RecName: Full=DNA-directed RNA polymerase III subunit RPC2;... Homo sapiens human 9606 491 491 98% 2e-160 41.64 1133 Q9NW08.2 RecName: Full=DNA-directed RNA polymerase III subunit RPC2;... Drosophila m... fruit fly 7227 491 491 98% 4e-160 40.90 1137 P25167.2 RecName: Full=DNA-directed RNA polymerase III subunit rpc2;... Dictyosteliu... NA 44689 488 488 98% 6e-155 41.00 1608 Q54IZ9.1 RecName: Full=DNA-directed RNA polymerase III subunit 2;... Arabidopsis ... thale cress 3702 467 467 98% 8e-151 39.87 1161 F4KD38.1 RecName: Full=DNA-directed RNA polymerase subunit 2... Acanthamoeba... NA 212035 382 382 99% 1e-118 33.33 1196 Q7T6X7.2 RecName: Full=Probable DNA-directed RNA polymerase II subunit... Invertebrate... NA 345201 332 332 92% 5e-100 35.02 1140 Q197F1.1 RecName: Full=DNA-directed RNA polymerase I subunit RPA2;... Euplotes oct... NA 2716877 331 331 84% 1e-99 33.51 1166 P28365.2 RecName: Full=DNA-directed RNA polymerase I subunit RPA2;... Homo sapiens human 9606 318 318 84% 7e-95 34.52 1135 Q9H9Y6.2 RecName: Full=Probable DNA-directed RNA polymerase II subunit... Invertebrate... NA 176652 318 318 98% 8e-95 32.00 1193 Q91F97.1 RecName: Full=DNA-directed RNA polymerase I subunit RPA2;... Mus musculus house mouse 10090 315 315 83% 5e-94 34.86 1135 P70700.2 RecName: Full=DNA-directed RNA polymerases IV and V subunit 2;... Arabidopsis ... thale cress 3702 311 311 97% 2e-92 32.74 1172 Q9LK40.1 RecName: Full=DNA-directed RNA polymerase I subunit RPA2;... Danio rerio zebrafish 7955 311 311 83% 2e-92 34.91 1132 B8JKD7.1 RecName: Full=DNA-directed RNA polymerase D subunit 2b;... Arabidopsis ... thale cress 3702 311 311 97% 2e-92 33.01 1119 Q9LV32.1 RecName: Full=DNA-directed RNA polymerase I subunit 2; AltName... Arabidopsis ... thale cress 3702 311 311 79% 3e-92 35.91 1178 F4I366.1 RecName: Full=DNA-directed RNA polymerase I subunit RPA2;... Rattus norve... Norway rat 10116 310 310 77% 5e-92 36.01 1135 O54888.1 RecName: Full=DNA-directed RNA polymerase I subunit RPA2;... Pongo abelii Sumatran ora... 9601 310 310 83% 5e-92 34.28 1136 Q5REE8.1 RecName: Full=Putative DNA-directed RNA polymerase II subunit... Frog virus 3... NA 654924 309 309 76% 2e-91 35.69 1221 Q6GZR3.1 RecName: Full=DNA-directed RNA polymerase I subunit RPA2 homol... Caenorhabdit... NA 6239 301 301 83% 6e-89 33.40 1127 Q27493.1 RecName: Full=DNA-directed RNA polymerase I subunit RPA2;... Eremothecium... NA 284811 299 299 74% 8e-88 36.73 1196 Q75DS1.2 RecName: Full=DNA-directed RNA polymerase I subunit rpa2;... Dictyosteliu... NA 44689 296 296 84% 4e-87 32.83 1130 Q54BM1.1 RecName: Full=DNA-directed RNA polymerase I subunit RPA135;... Saccharomyce... NA 559292 297 297 76% 4e-87 36.40 1203 P22138.1 RecName: Full=DNA-directed RNA polymerase I subunit RPA2;... Drosophila m... fruit fly 7227 294 294 83% 3e-86 33.27 1129 P20028.2 RecName: Full=Probable DNA-directed RNA polymerase I subunit... Schizosaccha... NA 284812 290 290 71% 9e-85 37.64 1174 Q9P7X8.2 RecName: Full=DNA-directed RNA polymerase I subunit RPA2;... Neurospora c... NA 367110 289 289 79% 3e-84 33.98 1234 O74633.2 RecName: Full=DNA-directed RNA polymerase RPB2 homolog;... African swin... NA 561445 270 270 97% 2e-77 30.70 1242 P0C8K2.1 RecName: Full=DNA-directed RNA polymerase RPB2 homolog;... African swin... NA 10500 270 270 97% 3e-77 30.85 1242 P0C8K3.1 RecName: Full=DNA-directed RNA polymerase RPB2 homolog;... African swin... NA 10498 269 269 97% 5e-77 30.85 1242 P42487.1 RecName: Full=DNA-directed RNA polymerase RPB2 homolog;... African swin... NA 561443 268 268 97% 8e-77 30.70 1242 P0C8K4.1 RecName: Full=DNA-directed RNA polymerase subunit beta;... Clostridioid... NA 272563 214 214 55% 5e-58 36.26 1238 Q18CF1.1 RecName: Full=DNA-directed RNA polymerase subunit beta;... Caldicellulo... NA 521460 214 214 79% 7e-58 29.60 1228 B9MQG5.1 RecName: Full=DNA-directed RNA polymerase subunit beta;... Acholeplasma... NA 441768 211 211 67% 4e-57 34.83 1271 A9NEL7.1 RecName: Full=DNA-directed RNA polymerase subunit beta;... Candidatus P... NA 59748 211 211 66% 4e-57 33.57 1240 B1VAM6.1 RecName: Full=DNA-directed RNA polymerase subunit beta;... Caldicellulo... NA 351627 210 210 79% 1e-56 29.55 1229 A4XI30.1 RecName: Full=DNA-directed RNA polymerase subunit beta;... Staphylococc... NA 396513 209 209 67% 2e-56 33.10 1183 B9DKV0.1 RecName: Full=DNA-directed RNA polymerase subunit beta;... Enterococcus... NA 1352 208 208 81% 4e-56 29.05 1208 Q8GCR6.1 RecName: Full=DNA-directed RNA polymerase subunit beta;... Lysinibacill... NA 444177 208 208 65% 6e-56 33.17 1191 B1HMZ6.1 RecName: Full=DNA-directed RNA polymerase subunit beta;... Exiguobacter... NA 360911 207 207 65% 6e-56 32.93 1182 C4KZQ4.1 RecName: Full=DNA-directed RNA polymerase subunit beta;... Geobacillus ... NA 235909 207 207 65% 7e-56 33.41 1190 Q5L405.1 RecName: Full=DNA-directed RNA polymerase subunit beta;... Halalkalibac... NA 272558 207 207 66% 7e-56 33.33 1180 Q9Z9M2.1 RecName: Full=DNA-directed RNA polymerase subunit beta;... Shouchella c... NA 66692 207 207 66% 9e-56 33.33 1180 Q5WLS0.1 RecName: Full=DNA-directed RNA polymerase subunit beta;... Geobacillus ... NA 420246 207 207 65% 1e-55 33.41 1190 A4IJI1.1 RecName: Full=DNA-directed RNA polymerase subunit beta;... Acetivibrio ... NA 203119 206 206 64% 2e-55 34.23 1250 A3DIZ4.1 RecName: Full=DNA-directed RNA polymerase subunit beta;... Pediococcus ... NA 278197 206 206 64% 2e-55 33.50 1202 Q03EA9.1 RecName: Full=DNA-directed RNA polymerase subunit beta;... Alkaliphilus... NA 350688 206 206 64% 2e-55 33.33 1241 A8MLD2.1 RecName: Full=DNA-directed RNA polymerase subunit beta;... Ligilactobac... NA 362948 206 206 65% 3e-55 33.58 1199 Q1WVA5.1 RecName: Full=DNA-directed RNA polymerase 132 kDa polypeptide... Fowlpox viru... NA 928301 206 206 92% 3e-55 27.91 1161 Q9J544.1 RecName: Full=DNA-directed RNA polymerase subunit beta;... Macrococcoid... NA 458233 205 205 65% 4e-55 32.68 1180 B9E8Q5.1 RecName: Full=DNA-directed RNA polymerase subunit beta;... Enterococcus... NA 226185 205 205 67% 4e-55 34.44 1207 Q82Z40.1 RecName: Full=DNA-directed RNA polymerase subunit beta;... Symbiobacter... NA 292459 205 205 78% 5e-55 28.47 1250 Q67JT3.1 RecName: Full=DNA-directed RNA polymerase subunit beta;... Carboxydothe... NA 246194 205 205 78% 5e-55 28.75 1132 Q3A9Q7.1 RecName: Full=DNA-directed RNA polymerase subunit beta;... Staphylococc... NA 342451 204 204 66% 7e-55 32.53 1183 Q49V52.1 RecName: Full=DNA-directed RNA polymerase subunit beta;... Lactiplantib... NA 220668 204 204 64% 7e-55 33.00 1201 Q88XZ3.2 RecName: Full=DNA-directed RNA polymerase subunit beta;... Streptococcu... NA 488222 204 204 67% 8e-55 33.41 1203 C1CGP4.1 RecName: Full=DNA-directed RNA polymerase subunit beta;... Streptococcu... NA 561276 204 204 67% 9e-55 33.41 1203 B8ZNW7.1 RecName: Full=DNA-directed RNA polymerase subunit beta;... Streptococcu... NA 488221 204 204 67% 1e-54 33.41 1198 C1CA06.1 RecName: Full=DNA-directed RNA polymerase subunit beta;... Streptococcu... NA 488223 204 204 67% 1e-54 33.41 1203 C1CMQ8.1 RecName: Full=DNA-directed RNA polymerase subunit beta;... Streptococcu... NA 391295 204 204 67% 1e-54 33.41 1190 A4VSK2.1 RecName: Full=DNA-directed RNA polymerase subunit beta;... Streptococcu... NA 487214 204 204 67% 1e-54 33.41 1203 B1I8R4.1 RecName: Full=DNA-directed RNA polymerase subunit beta;... Streptococcu... NA 512566 204 204 67% 1e-54 33.41 1203 B5E2F3.1 RecName: Full=DNA-directed RNA polymerase subunit beta;... Listeria wel... NA 386043 204 204 66% 2e-54 33.33 1184 A0AF63.1 RecName: Full=DNA-directed RNA polymerase subunit beta;... Listeria inn... NA 272626 203 203 66% 2e-54 33.33 1184 Q92F22.1 RecName: Full=DNA-directed RNA polymerase subunit beta;... Listeria mon... NA 568819 203 203 66% 2e-54 33.33 1184 C1KYJ3.1 RecName: Full=DNA-directed RNA polymerase subunit beta;... Oceanobacill... NA 221109 203 203 66% 2e-54 32.85 1179 Q8ETY8.1 RecName: Full=DNA-directed RNA polymerase subunit beta;... Listeria mon... NA 552536 203 203 66% 2e-54 33.33 1184 B8DEY8.1 RecName: Full=DNA-directed RNA polymerase subunit beta;... Fusobacteriu... NA 190304 203 203 64% 2e-54 34.31 1184 Q8RHI6.1 RecName: Full=DNA-directed RNA polymerase subunit beta;... Lacticaseiba... NA 321967 203 203 65% 2e-54 33.33 1199 Q034X0.1 RecName: Full=DNA-directed RNA polymerase subunit beta;... Staphylococc... NA 359786 203 203 65% 2e-54 32.60 1183 A5IQ96.1 RecName: Full=DNA-directed RNA polymerase subunit beta;... Enterococcus... NA 1352 203 203 67% 2e-54 33.73 1208 Q8GCR4.1 RecName: Full=DNA-directed RNA polymerase subunit beta;... Lacticaseiba... NA 543734 203 203 64% 2e-54 33.50 1199 B3WAM8.1 RecName: Full=DNA-directed RNA polymerase subunit beta;... Staphylococc... NA 158878 203 203 65% 3e-54 32.60 1183 Q932F8.1 RecName: Full=DNA-directed RNA polymerase subunit beta;... Staphylococc... NA 279808 203 203 65% 3e-54 32.60 1183 Q4L3K3.1 RecName: Full=DNA-directed RNA polymerase subunit beta;... Staphylococc... NA 426430 203 203 65% 3e-54 32.60 1183 A6QEJ4.1 Alignments: >RecName: Full=DNA-directed RNA polymerase subunit Rpo2C; AltName: Full=DNA-directed RNA polymerase subunit B' [Halobacterium salinarum R1] Sequence ID: B0R8D5.1 Length: 608 >RecName: Full=DNA-directed RNA polymerase subunit Rpo2C; AltName: Full=DNA-directed RNA polymerase subunit B' [Halobacterium salinarum NRC-1] Sequence ID: P0CX03.1 Length: 608 Range 1: 2 to 608 Score:1070 bits(2768), Expect:0.0, Method:Compositional matrix adjust., Identities:515/607(85%), Positives:565/607(93%), Gaps:0/607(0%) Query 3 SQQREAKVYVNGSLVGTHPDPHELAEQIREARRIGDVSEMVNVSVKERTREVIINADAGR 62 S +REAKVYVNGSLVGTH +P ELAEQIREARR G+VSEMVNVSV++RT EVI+NADAGR Sbjct 2 STEREAKVYVNGSLVGTHENPEELAEQIREARRRGEVSEMVNVSVRDRTGEVIVNADAGR 61 Query 63 ARRPLLVVEDGEPRISEAEIEALRDGDLEFDDLVAHGYVEFIDAEEEEDIYVAVDEDDLE 122 ARRPLLVVE+GEP +++ E+EA+++GD++F+DLV G VEFIDAEEEEDI V V+E++L Sbjct 62 ARRPLLVVENGEPVVTQEEVEAVKNGDIDFEDLVEAGKVEFIDAEEEEDILVGVEEEELT 121 Query 123 EEHTHLEIDPQLIFGIGAGMIPYPEHNASPRITMGAGMVKQSLGLPAANYRIRPDTRQHL 182 +HTHLEIDPQLIFGIGAGMIPYPEHNASPRITMGAGM+KQSLGLPAANYRIRPDTRQHL Sbjct 122 TDHTHLEIDPQLIFGIGAGMIPYPEHNASPRITMGAGMMKQSLGLPAANYRIRPDTRQHL 181 Query 183 LHYPQLSMVKTQTTEQIGFDERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHF 242 LHYPQ +MV TQTTEQIG+D+RPA QNFVVAVMSYEGFNIEDALVMNK SVERAL+RSHF Sbjct 182 LHYPQKAMVNTQTTEQIGYDDRPAGQNFVVAVMSYEGFNIEDALVMNKGSVERALSRSHF 241 Query 243 FRTYEGEERRYPGGQEDRFEIPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKT 302 FRTYEGEERRYPGGQEDRFEIP DVRGARGE+AY HLD+DGLVNPET+VD++SVLLGKT Sbjct 242 FRTYEGEERRYPGGQEDRFEIPGDDVRGARGEDAYTHLDDDGLVNPETKVDDSSVLLGKT 301 Query 303 SPPRFLEEPDDMGGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDERIP 362 SPPRFLEEP+DMGGLSPQKRRETSVTMRSGE GVVDTVTLMEGEDGSKL+KVSVRDERIP Sbjct 302 SPPRFLEEPEDMGGLSPQKRRETSVTMRSGEDGVVDTVTLMEGEDGSKLAKVSVRDERIP 361 Query 363 ELGDKFASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKL 422 ELGDKFASRHGQKGV+GHLAPQEDMPFT+EGVVPDLV+NPHALPSRMTVGH+LEM+GGK Sbjct 362 ELGDKFASRHGQKGVVGHLAPQEDMPFTQEGVVPDLVLNPHALPSRMTVGHVLEMLGGKA 421 Query 423 GSMEGRRVDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQK 482 GS++GR VDGTPF GE E+++R LED GF S+GKE MYSGV+GEKIEAEIFVG IFY K Sbjct 422 GSLDGRSVDGTPFTGEGEDEIRGTLEDRGFKSSGKEVMYSGVSGEKIEAEIFVGTIFYHK 481 Query 483 LYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDE 542 LYHMVSNKLHARS+GPVQVLTRQPTEGRAREGGLR+GEMERD IGHGAAM LKERLLD Sbjct 482 LYHMVSNKLHARSKGPVQVLTRQPTEGRAREGGLRVGEMERDTVIGHGAAMVLKERLLDS 541 Query 543 SDREFIHICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGIAPR 602 SDRE IH+CGNCGMTA EN EQRRVYCPNC EETD+H IEMSYAFKLLLDEMKALGIAPR Sbjct 542 SDREEIHVCGNCGMTAVENYEQRRVYCPNCEEETDVHSIEMSYAFKLLLDEMKALGIAPR 601 Query 603 LELEDAV 609 LELE+AV Sbjct 602 LELEEAV 608 >RecName: Full=DNA-directed RNA polymerase subunit Rpo2C; AltName: Full=DNA-directed RNA polymerase subunit B' [Archaeoglobus fulgidus DSM 4304] Sequence ID: O28392.1 Length: 604 Range 1: 2 to 602 Score:829 bits(2142), Expect:0.0, Method:Compositional matrix adjust., Identities:399/602(66%), Positives:483/602(80%), Gaps:1/602(0%) Query 6 REAKVYVNGSLVGTHPDPHELAEQIREARRIGDVSEMVNVSVKERTREVIINADAGRARR 65 R+ +VY+NG+LVG H + ELA +IRE RR G +S VNV + EV IN DAGRARR Sbjct 2 RKCRVYINGALVGFHDNGEELANKIRELRRKGRISNQVNVVYYPDSNEVRINTDAGRARR 61 Query 66 PLLVVEDGEPRISEAEIEALRDGDLEFDDLVAHGYVEFIDAEEEEDIYVAVDEDDLEEEH 125 PL+VV+DG+P ++ IE ++ G+L +DLV G +E++DAEEEE+ YVAV E +L EH Sbjct 62 PLIVVKDGKPLVTPEHIEKIKKGELTIEDLVRQGLIEYLDAEEEENAYVAVYEHELTPEH 121 Query 126 THLEIDPQLIFGIGAGMIPYPEHNASPRITMGAGMVKQSLGLPAANYRIRPDTRQHLLHY 185 THLE+DP LI GI G IPY EHNASPR TMGA M+KQSLG+P +N R DTR HL+ + Sbjct 122 THLELDPSLIVGICTGSIPYAEHNASPRNTMGAAMIKQSLGIPYSNLAWRTDTRGHLMQH 181 Query 186 PQLSMVKTQTTEQIGFDERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRT 245 PQ+ +V T T +I FDERPA QNFVVAV+SYEG+NIEDAL+MNK SVER L RS F+RT Sbjct 182 PQVPIVTTDTQVEIKFDERPAGQNFVVAVLSYEGYNIEDALIMNKGSVERGLGRSFFYRT 241 Query 246 YEGEERRYPGGQEDRFEIPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPP 305 YE EE RYPGGQED+FEIP D+ G RG EAYAHLDEDGL+ PET+V + VL+G+TSPP Sbjct 242 YESEEMRYPGGQEDKFEIPGADISGFRGAEAYAHLDEDGLIFPETEVGPDDVLIGRTSPP 301 Query 306 RFLEEPDDMGGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDERIPELG 365 RFLEEP ++G +SPQKRRETSVTMRS E GVVD V LM+ E GSKL+KV VRD RIPELG Sbjct 302 RFLEEPTELG-ISPQKRRETSVTMRSNEKGVVDAVFLMQSEGGSKLAKVRVRDLRIPELG 360 Query 366 DKFASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSM 425 DKFASRHGQKGV+G L P+EDMPFTE G+VPDL++NPHA+PSRMTVGH+LEMIGGK+GS+ Sbjct 361 DKFASRHGQKGVVGLLVPEEDMPFTESGIVPDLIINPHAIPSRMTVGHVLEMIGGKVGSL 420 Query 426 EGRRVDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYH 485 EGRRVDG+ F GE EEDLR+ L+ GF+ GKE MY G+TG + +IFVGVI+YQKLYH Sbjct 421 EGRRVDGSLFHGESEEDLRATLKKYGFSHTGKEVMYDGITGRRYLVDIFVGVIYYQKLYH 480 Query 486 MVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDR 545 MVS+K+HARSRGPVQVLTRQPTEGRAR+GGLR GEMERDV IGHGAA+ LK+RLL+ESD+ Sbjct 481 MVSSKIHARSRGPVQVLTRQPTEGRARKGGLRFGEMERDVLIGHGAALLLKDRLLEESDK 540 Query 546 EFIHICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGIAPRLEL 605 + +CGNCG AT + + YC C +E++IH++EMSYAFKLLLDE+K++ IAPR+ L Sbjct 541 VEVWVCGNCGHVATYDYRRNTAYCHICDDESNIHKVEMSYAFKLLLDELKSMMIAPRIIL 600 Query 606 ED 607 D Sbjct 601 GD 602 >RecName: Full=DNA-directed RNA polymerase subunit Rpo2C; AltName: Full=DNA-directed RNA polymerase subunit B' [Methanothermobacter thermautotrophicus str. Winter] Sequence ID: P09845.2 Length: 604 Range 1: 3 to 602 Score:782 bits(2019), Expect:0.0, Method:Compositional matrix adjust., Identities:370/602(61%), Positives:476/602(79%), Gaps:3/602(0%) Query 7 EAKVYVNGSLVGTHPDPHELAEQIREARRIGDVSEMVNVSVKERTREVIINADAGRARRP 66 + K+Y+NG L+GT +P E E+IR RR G+VS +N++ E+ I D GRARRP Sbjct 3 KTKIYINGKLIGTCDNPEEFVEEIRAKRRSGEVSHEMNITHYPENHEIYIFTDPGRARRP 62 Query 67 LLVVEDGEPRISEAEIEALRDGDLEFDDLVAHGYVEFIDAEEEEDIYVAVDEDDLEEEHT 126 L++VEDGEP + E +E L G++E+DDL++ G +E++DAEEEE+ Y+A+ +++ EEHT Sbjct 63 LIIVEDGEPLLKEEHLEKLSSGEMEWDDLISQGIIEYLDAEEEENTYIAMSPEEVTEEHT 122 Query 127 HLEIDPQLIFGIGAGMIPYPEHNASPRITMGAGMVKQSLGLPAANYRIRPDTRQHLLHYP 186 HLEIDP + GI AG+IP+ HN+SPR TM AGM KQ+LGL A+NY +R DTR HLLH+P Sbjct 123 HLEIDPSTMLGICAGIIPFANHNSSPRNTMEAGMTKQALGLYASNYNLRTDTRAHLLHHP 182 Query 187 QLSMVKTQTTEQIGFDERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTY 246 Q+ +VKT+ + G+DERP+ QNFVVAVMSYEG+N+EDAL++NKAS+ER LARS FFR+Y Sbjct 183 QVPIVKTRIIDVTGYDERPSGQNFVVAVMSYEGYNMEDALILNKASLERGLARSSFFRSY 242 Query 247 EGEERRYPGGQEDRFEIPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPPR 306 E ERRYPGGQEDRFEIP + VRG R E Y HLDEDG++NPET+V VL+GKTSPPR Sbjct 243 EATERRYPGGQEDRFEIPEKGVRGYRSERDYRHLDEDGIINPETEVSSGDVLIGKTSPPR 302 Query 307 FLEEPDDMGGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDERIPE-LG 365 FLEE D+ G ++ ++RRETSVT+R GE G+VD V L E +GS+L+K+ VR++R PE +G Sbjct 303 FLEEIDEFGTVA-ERRRETSVTVRHGEEGIVDAVLLTETVEGSRLAKIRVREQRQPEFIG 361 Query 366 DKFASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSM 425 DKFASRHGQKGV+G + QEDMPFTE+GVVPDL+VNPHA+PSRM+VG +LEM+ GK M Sbjct 362 DKFASRHGQKGVVGLIVSQEDMPFTEDGVVPDLIVNPHAIPSRMSVGQVLEMLAGKAACM 421 Query 426 EGRRVDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYH 485 EGRRVDGTPF GE+E+DL+ L+ GF SAG ET+Y+G+TGE+IEAEIF+GV +YQKL+H Sbjct 422 EGRRVDGTPFTGEEEKDLKEALKANGFESAGVETLYNGITGERIEAEIFIGVAYYQKLHH 481 Query 486 MVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDR 545 M +++++ARSRGPVQVLTRQPTEGRAREGGLR GEMERD I HGAA+ LKERLLDESD+ Sbjct 482 MTTDRIYARSRGPVQVLTRQPTEGRAREGGLRFGEMERDCLIAHGAALALKERLLDESDK 541 Query 546 EFIHICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGIAPRLEL 605 +C CGM A + + + YCP C E+++ +E+SYAFKLLLDE+K+L I P+L L Sbjct 542 YEALVCAECGMIAIYDKIRDKKYCPIC-EDSESFPVEISYAFKLLLDELKSLCIFPKLVL 600 Query 606 ED 607 ED Sbjct 601 ED 602 >RecName: Full=DNA-directed RNA polymerase subunit Rpo2C; AltName: Full=DNA-directed RNA polymerase subunit B' [Methanothermobacter thermautotrophicus str. Delta H] Sequence ID: O27124.1 Length: 603 Range 1: 3 to 601 Score:781 bits(2018), Expect:0.0, Method:Compositional matrix adjust., Identities:367/601(61%), Positives:476/601(79%), Gaps:2/601(0%) Query 7 EAKVYVNGSLVGTHPDPHELAEQIREARRIGDVSEMVNVSVKERTREVIINADAGRARRP 66 + K+Y+NG L+GT +P E E++R+ RR G+VS +N++ E+ I D GRARRP Sbjct 3 KTKIYINGKLIGTCENPEEFVEEMRKKRRSGEVSPEMNITHYPENHEIYIFTDPGRARRP 62 Query 67 LLVVEDGEPRISEAEIEALRDGDLEFDDLVAHGYVEFIDAEEEEDIYVAVDEDDLEEEHT 126 L++VEDGEP ++E +E L G++ +DDL+A G +E++DAEEEE+ Y+A+ D++ +EHT Sbjct 63 LIIVEDGEPLLTEEHLEKLETGEMSWDDLIAAGIIEYLDAEEEENAYIAMSPDEINDEHT 122 Query 127 HLEIDPQLIFGIGAGMIPYPEHNASPRITMGAGMVKQSLGLPAANYRIRPDTRQHLLHYP 186 HLEIDP + GI AG+IP+ HN+SPR TM AGM KQ+LGL A+NY +R DTR HLLH+P Sbjct 123 HLEIDPSTMLGICAGIIPFANHNSSPRNTMEAGMTKQALGLYASNYDLRTDTRAHLLHHP 182 Query 187 QLSMVKTQTTEQIGFDERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTY 246 Q+ +VKT+ + G+DERP+ QNFVVAVMSYEG+N+EDAL++NKAS+ER LARS FFR+Y Sbjct 183 QVPIVKTRIIDVTGYDERPSGQNFVVAVMSYEGYNMEDALILNKASLERGLARSSFFRSY 242 Query 247 EGEERRYPGGQEDRFEIPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPPR 306 E ERRYPGGQEDRFEIP + VRG R E Y HLDEDG++NPE +V VL+GKTSPPR Sbjct 243 EAAERRYPGGQEDRFEIPEKGVRGYRSESDYRHLDEDGIINPEAEVSSGDVLIGKTSPPR 302 Query 307 FLEEPDDMGGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDERIPELGD 366 FLEE D+ G ++ ++RRETSVT+R GE G+VD V L E +GS+L+K+ VR++R PELGD Sbjct 303 FLEEIDEFGTVA-ERRRETSVTVRHGEKGIVDAVLLTETVEGSRLAKIRVREQRQPELGD 361 Query 367 KFASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSME 426 KFASRHGQKGV+G + QEDMPFTE+G+VPDL+VNPHA+PSRM+VG +LEM+ GK ME Sbjct 362 KFASRHGQKGVVGLIVSQEDMPFTEDGIVPDLIVNPHAIPSRMSVGQVLEMLAGKAACME 421 Query 427 GRRVDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHM 486 GRRVDGTPF GEDE+D++ L GF +AG E++Y+G+TGE+IEAEIF+GV +YQKL+HM Sbjct 422 GRRVDGTPFTGEDEDDIKEALRANGFETAGVESLYNGITGERIEAEIFIGVAYYQKLHHM 481 Query 487 VSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDRE 546 ++K++ARSRGPVQVLTRQPTEGRAREGGLR GEMERD I HGAA+ LKERLLDESD+ Sbjct 482 TTDKVYARSRGPVQVLTRQPTEGRAREGGLRFGEMERDCLIAHGAALALKERLLDESDKY 541 Query 547 FIHICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGIAPRLELE 606 +C +CGM A + + + YCP C E+++ +E+SYAFKLLLDE+K+L I P+L LE Sbjct 542 EALVCADCGMIAVYDKIRDKKYCPIC-EDSESFPVEVSYAFKLLLDELKSLCIFPKLILE 600 Query 607 D 607 D Sbjct 601 D 601 >RecName: Full=DNA-directed RNA polymerase subunit Rpo2; AltName: Full=DNA-directed RNA polymerase subunit B [Thermococcus celer] Sequence ID: P31814.1 Length: 1122 Range 1: 520 to 1122 Score:761 bits(1965), Expect:0.0, Method:Compositional matrix adjust., Identities:365/603(61%), Positives:472/603(78%), Gaps:2/603(0%) Query 9 KVYVNGSLVGTHPDPHELAEQIREARRIGDVSEMVNVSV--KERTREVIINADAGRARRP 66 ++Y+NG LVGT D +IR RR G +S+++NV++ E +E+ +N+D GR RRP Sbjct 520 RLYLNGVLVGTVEDGEGFVNRIRTDRRSGKISDIINVALYQDEDVKEIYVNSDDGRVRRP 579 Query 67 LLVVEDGEPRISEAEIEALRDGDLEFDDLVAHGYVEFIDAEEEEDIYVAVDEDDLEEEHT 126 L++VE+G P+++ +EA+++G L + DLV G +E++DAEEEE+ VA ++ EEHT Sbjct 580 LIIVENGRPKLTREHVEAIKNGSLTWSDLVKMGVIEYLDAEEEENALVATWPWEVTEEHT 639 Query 127 HLEIDPQLIFGIGAGMIPYPEHNASPRITMGAGMVKQSLGLPAANYRIRPDTRQHLLHYP 186 HLE+ P I GI A ++PYPEHNA PR T GAGM KQSLGL AN+RIR DTR HL+HYP Sbjct 640 HLELMPAAILGIPASLVPYPEHNARPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLMHYP 699 Query 187 QLSMVKTQTTEQIGFDERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTY 246 Q+ +V ++ + +GF+ERPA QNFVVAV+SY G+N+EDA++MNKAS+ER LARS FFRTY Sbjct 700 QVPLVNSRIMKAVGFEERPAGQNFVVAVLSYAGYNMEDAIIMNKASIERGLARSTFFRTY 759 Query 247 EGEERRYPGGQEDRFEIPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPPR 306 E EE+RY GGQ DRFEIP ++G GE Y HLDEDG++ PE++V+ VL+G+TSPPR Sbjct 760 EAEEKRYLGGQTDRFEIPDPTIQGYLGERYYRHLDEDGIIFPESKVNGKDVLVGRTSPPR 819 Query 307 FLEEPDDMGGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDERIPELGD 366 FLEE +GG+ Q+RRETS+T+R E+GVVD V + E DG+KL KV+ RD RIPE GD Sbjct 820 FLEEQSGLGGIILQERRETSLTVRPSETGVVDKVIITETGDGTKLVKVTTRDLRIPEFGD 879 Query 367 KFASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSME 426 KFASRHGQKGVIG + PQEDMP+TE G+VPDL+VNPH +PSRMTVG ++E IGGK+ S++ Sbjct 880 KFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLIEAIGGKVASLK 939 Query 427 GRRVDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHM 486 GRRVDGT F+GE EE LR LE++GF +G+E MY G+TG ++EA++FVGVI+YQ+L+HM Sbjct 940 GRRVDGTAFIGEPEEKLRKELEELGFKHSGREVMYDGITGRRLEADVFVGVIYYQRLHHM 999 Query 487 VSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDRE 546 V++K+HARSRGPVQVLT+QPTEGRAREGGLR GEMERDV IGHGAAM L ERLL+ESD+ Sbjct 1000 VADKMHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLIGHGAAMLLIERLLEESDKT 1059 Query 547 FIHICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGIAPRLELE 606 + +C NCG A E+ + +VYCP CGEE I ++EMSYAFKLLLDE+KA+GI P L+L Sbjct 1060 EVWVCENCGHIALEDKRRGKVYCPVCGEEERISKVEMSYAFKLLLDELKAMGIRPSLKLV 1119 Query 607 DAV 609 D V Sbjct 1120 DRV 1122 >RecName: Full=DNA-directed RNA polymerase subunit Rpo2C; AltName: Full=DNA-directed RNA polymerase subunit B' [Methanocaldococcus jannaschii DSM 2661] Sequence ID: Q60181.1 Length: 636 Range 1: 7 to 615 Score:755 bits(1950), Expect:0.0, Method:Compositional matrix adjust., Identities:360/610(59%), Positives:463/610(75%), Gaps:7/610(1%) Query 6 REAKVYVNGSLVGTHPDPHELAEQIREARRIGDVSEMVNVSVKERTREVIINADAGRARR 65 RE +YVNG LVGT P EL IRE RR G++ + V+ E + ++ IN DAGR R Sbjct 7 REVNIYVNGKLVGTTDKPEELVNFIREKRRKGELPQYTTVAYNEESNDIHINTDAGRIVR 66 Query 66 PLLVVEDGEPRISEAEIEALRDGDLEFDDLVAHGYVEFIDAEEEEDIYVAVDEDDLEEEH 125 PL+VVE+G+P++++ IE L+ G++ F DLV G +E++DAEEEE+ Y+A+ E++L E+H Sbjct 67 PLIVVENGKPKLTKEHIEKLKKGEITFSDLVKEGVIEYLDAEEEENAYIALSEEELTEKH 126 Query 126 THLEIDPQLIFGIGAGMIPYPEHNASPRITMGAGMVKQSLGLPAANYRIRPDTRQHLLHY 185 THLEIDP I GIGAG+ PYPEHN++PRITM A M KQSLG+P +N + R DTR H LHY Sbjct 127 THLEIDPLTILGIGAGVAPYPEHNSAPRITMAAAMGKQSLGIPMSNIKWRLDTRGHYLHY 186 Query 186 PQLSMVKTQTTEQIGFDERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRT 245 PQ+ +V+T+ E +GFD+RPA QNFVVA+MSYEG+N+EDA+V NK++++R L RS FFRT Sbjct 187 PQVPIVRTKHQEILGFDKRPAGQNFVVAIMSYEGYNMEDAIVFNKSAIDRGLGRSTFFRT 246 Query 246 YEGEERRYPGGQEDRFEIPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPP 305 Y+ ERRYPGGQ DRFEIP + VRG R EE Y +L+EDG+V E+ V V++GKTSPP Sbjct 247 YDACERRYPGGQMDRFEIPDKGVRGYRSEECYRYLEEDGIVAVESHVKGGDVIVGKTSPP 306 Query 306 RFLEEPDDMGGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDERIPELG 365 RFLEE + + PQ RR++SV +R GE G +D V L E ++G++L KV VRD RIPELG Sbjct 307 RFLEEHEITIQVKPQ-RRDSSVVVRHGEEGYIDKVILTETKEGNRLVKVKVRDLRIPELG 365 Query 366 DKFASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSM 425 DKFASRHGQKGV+G PQED+PFTE G+VPD+++NPHA+PSRMTVG +LEM+GGK+G++ Sbjct 366 DKFASRHGQKGVMGLTVPQEDLPFTESGIVPDIIINPHAIPSRMTVGQLLEMLGGKVGAL 425 Query 426 EGRRVDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYH 485 EGRR+DGT F GE E DLR LE +GF GKE MY G TG+K E EI++G+ +YQKL+H Sbjct 426 EGRRIDGTIFSGEKEWDLRKALEALGFKHHGKEVMYDGKTGKKFEVEIYIGIAYYQKLHH 485 Query 486 MVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDR 545 +V+ K+HARSRGPVQVLTRQPTEGRAREGGLR GEMERDV IGHGAAM LKERL+DESD Sbjct 486 LVAGKIHARSRGPVQVLTRQPTEGRAREGGLRFGEMERDVLIGHGAAMLLKERLMDESDP 545 Query 546 EFIHICGNCGMTATENVEQRRVYCPNCGEETDIHE------IEMSYAFKLLLDEMKALGI 599 I IC CG A + ++ YCP CGE +++ + + YAFKLLLDE+K++ I Sbjct 546 YDICICSKCGDFAILDYKRGLKYCPICGEIENLYSSKKIPFVRIPYAFKLLLDELKSMCI 605 Query 600 APRLELEDAV 609 PR+++ D V Sbjct 606 LPRIKVRDKV 615 >RecName: Full=DNA-directed RNA polymerase subunit Rpo2C; AltName: Full=DNA-directed RNA polymerase subunit B' [Methanococcus vannielii SB] Sequence ID: P41557.2 Length: 611 Range 1: 2 to 609 Score:741 bits(1914), Expect:0.0, Method:Compositional matrix adjust., Identities:356/609(58%), Positives:466/609(76%), Gaps:7/609(1%) Query 5 QREAKVYVNGSLVGTHPDPHELAEQIREARRIGDVSEMVNVSVKERTREVIINADAGRAR 64 +++A VYVNG L+ T DP L + +R RR G +S ++S E + ++ I+ D GRA Sbjct 2 EKQANVYVNGKLIDTSKDPENLVKSLRIQRRSGKLSPNTSISFNEESNDIHISTDGGRAV 61 Query 65 RPLLVVEDGEPRISEAEIEALRDGDLEFDDLVAHGYVEFIDAEEEEDIYVAVDEDDLEEE 124 RPL+VVE+G +++ +E + + +L F+ LV G +EF+DAEEEE+ +A+ D++ E Sbjct 62 RPLVVVENGFSKLTNELLEKVNNNELTFEYLVKTGVIEFLDAEEEENARIAMYNDEITFE 121 Query 125 HTHLEIDPQLIFGIGAGMIPYPEHNASPRITMGAGMVKQSLGLPAANYRIRPDTRQHLLH 184 +TH+EIDP +I GIGAG+ PYPEHN++PRITM A M KQSLG+P AN + R DTR HLLH Sbjct 122 NTHVEIDPLVILGIGAGVAPYPEHNSAPRITMAAAMGKQSLGIPMANIKWRMDTRGHLLH 181 Query 185 YPQLSMVKTQTTEQIGFDERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFR 244 YPQ+ +V+T+ E +GFD+RPA QNFVVAVMSYEG+N+EDA V+NKAS+ER L RS FFR Sbjct 182 YPQVPLVRTKHQEILGFDKRPAGQNFVVAVMSYEGYNMEDAFVINKASLERGLGRSTFFR 241 Query 245 TYEGEERRYPGGQEDRFEIPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSP 304 +YE E+RYPGGQ D+FE+P + VRG R EEAY +L +DGL++ E++V V+LGKTSP Sbjct 242 SYESFEKRYPGGQLDKFEVPEKGVRGYRAEEAYRNLGDDGLIDLESEVRSGDVILGKTSP 301 Query 305 PRFLEEPDDMGGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDERIPEL 364 PRFLEE ++ + +RR+TSVT+R GE GVVD V L E ++G++L KV VRD R+PE Sbjct 302 PRFLEE-QEITLQTKSQRRDTSVTIRHGEEGVVDLVILSETKEGNRLGKVRVRDLRVPEF 360 Query 365 GDKFASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGS 424 GDKFASRHGQKGVIG + PQED+PFTE+GV+PDL++NPHA+PSRMT+G +LEMIGGK+GS Sbjct 361 GDKFASRHGQKGVIGLVVPQEDLPFTEDGVIPDLIINPHAIPSRMTIGQVLEMIGGKVGS 420 Query 425 MEGRRVDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLY 484 +E RRVDGT F GE E LR LE+ GF +GKETMY G TG K+E EIFVGV +YQKL+ Sbjct 421 LECRRVDGTIFSGEGEWALRHALENYGFTHSGKETMYDGKTGRKLECEIFVGVAYYQKLH 480 Query 485 HMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESD 544 H+V+ K+HARSRGP+QVLTRQPTEGRAREGGLR GEMERDV + HGAA+ LKERLLDESD Sbjct 481 HLVAGKIHARSRGPIQVLTRQPTEGRAREGGLRFGEMERDVLVAHGAALLLKERLLDESD 540 Query 545 REFIHICGNCGMTATENVEQRRVYCPNCGEETDIHE------IEMSYAFKLLLDEMKALG 598 ++C CG A + ++ +CP CGE DI + ++++YAFKLLLDE+K++G Sbjct 541 PHEDYVCAKCGEIAIFDYKRGMKFCPVCGESEDIQDNRKIPPVKIAYAFKLLLDELKSMG 600 Query 599 IAPRLELED 607 I P+L+L+D Sbjct 601 IDPKLKLKD 609 >RecName: Full=DNA-directed RNA polymerase subunit Rpo2; AltName: Full=DNA-directed RNA polymerase subunit B [Thermoplasma acidophilum DSM 1728] Sequence ID: Q03587.1 Length: 1195 Range 1: 549 to 1193 Score:738 bits(1906), Expect:0.0, Method:Compositional matrix adjust., Identities:359/647(55%), Positives:457/647(70%), Gaps:47/647(7%) Query 6 REAKVYVNGSLVGTHPDPHELAEQIREARRIGDVSEMVNVSVKERTREVIINADAGRARR 65 ++ +VY+NG +G H DP L +IRE RR G +S+ VNV + T EVI+N+D GR RR Sbjct 549 KKGRVYLNGDFIGYHDDPRYLVSRIREERRSGRMSDEVNVRYDDNTNEVIVNSDRGRLRR 608 Query 66 PLLVVEDGEPRISEAEIEALRDGDLEFDDLVAHGYVEFIDAEEEEDIYVAVDEDD----- 120 PLL+++DG+ + IE L+ G++ F+DLV G +E++DAEEEED YVAV D Sbjct 609 PLLILKDGKTVLDRTMIERLKHGEISFEDLVKQGAIEWLDAEEEEDTYVAVYAYDIPEKC 668 Query 121 --------------------------------------LEEEHTHLEIDPQLIFGIGAGM 142 L +E+THLEIDP +I G+ A + Sbjct 669 PHCNSYLYRSMVDWVNPGESEITLECGFCHQRFNVPSKLSKENTHLEIDPAMILGVVASI 728 Query 143 IPYPEHNASPRITMGAGMVKQSLGLPAANYRIRPDTRQHLLHYPQLSMVKTQTTEQIGFD 202 IPYPEHN+SPRIT+ + M KQSLG +N RIRPDTR HLLHYPQ+ +V+T+ + I +D Sbjct 729 IPYPEHNSSPRITIASAMAKQSLGFAQSNVRIRPDTRGHLLHYPQVPLVRTRVMDYIHYD 788 Query 203 ERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGEERRYPGGQEDRFE 262 RPA QNFVVAV+SYEG+NI+DALV+NKA++ER L RS FFRTY EERRYPGGQED+FE Sbjct 789 RRPAGQNFVVAVLSYEGYNIQDALVINKAAIERGLGRSTFFRTYSAEERRYPGGQEDKFE 848 Query 263 IPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPPRFLEEPDDMGGLSPQKR 322 IP+ D+ GAR EE Y +LD+ G++ PE V+ + VL+GKTSPPRFLEE ++ L PQ+R Sbjct 849 IPTHDIIGARAEEYYKNLDDSGIIFPEAYVEGSDVLIGKTSPPRFLEEGEER--LGPQRR 906 Query 323 RETSVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDERIPELGDKFASRHGQKGVIGHLA 382 RE+SVTMR ESG VD V L E S++ K+ VR ERIPELGDKFASRHGQKGV+G + Sbjct 907 RESSVTMRPNESGYVDNVFLTVSESNSRVVKIKVRSERIPELGDKFASRHGQKGVVGLVV 966 Query 383 PQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSMEGRRVDGTPFLGEDEED 442 PQEDMPFTE+G++PDL+ NPH++PSRMTVGHILEMIGGK+ S GR +DGT F GE E+ Sbjct 967 PQEDMPFTEDGIIPDLIFNPHSIPSRMTVGHILEMIGGKIASRTGRFIDGTIFSGEPEKS 1026 Query 443 LRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVSNKLHARSRGPVQVL 502 LR L GF + E MY G+TG + +A+IFVGVI+YQKL+HMV+ K HARSRGPVQ+L Sbjct 1027 LRDALVKYGFRKSSTEVMYDGITGRRFKADIFVGVIYYQKLHHMVAGKFHARSRGPVQIL 1086 Query 503 TRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIHICGN--CGMTATE 560 TRQPTEGR+R+GGLR GEMERD I HGAAM +K+RLLD+SD +++CGN CG A Sbjct 1087 TRQPTEGRSRQGGLRFGEMERDTLIAHGAAMVIKDRLLDQSDGTVLYVCGNPSCGHIAIY 1146 Query 561 NVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGIAPRLELED 607 + + + CP CG +I+ IE SYAFKL+ DE+ +LG+ RL L D Sbjct 1147 DRRKGTLRCPVCGNTGNIYPIETSYAFKLMRDELISLGVVMRLMLGD 1193 >RecName: Full=DNA-directed RNA polymerase subunit Rpo2; AltName: Full=DNA-directed RNA polymerase subunit B [Sulfolobus acidocaldarius DSM 639] Sequence ID: P11513.2 Length: 1126 Range 1: 516 to 1118 Score:671 bits(1731), Expect:0.0, Method:Compositional matrix adjust., Identities:318/606(52%), Positives:443/606(73%), Gaps:7/606(1%) Query 8 AKVYVNGSLVGTHPDPHELAEQIREARRIGDVSEMVNVS--VKERTREVIINADAGRARR 65 +KVY+NG L+G + D ELA++IRE+RR G +S+ VNV+ + EV IN DAGR RR Sbjct 516 SKVYLNGRLLGYYEDGKELAKKIRESRRQGKLSDEVNVAYIATDYLNEVHINCDAGRVRR 575 Query 66 PLLVVEDGEPRISEAEIEALRDGDLEFDDLVAHGYVEFIDAEEEEDIYVAVDEDDLEEEH 125 PL++V +G P + +I+ L++G++ FDDLV G +EFIDAEEEE+ YVA++ DL +H Sbjct 576 PLIIVNNGTPLVDTEDIKKLKNGEITFDDLVKQGKIEFIDAEEEENAYVALNPQDLTPDH 635 Query 126 THLEIDPQLIFGIGAGMIPYPEHNASPRITMGAGMVKQSLGLPAANYRIRPDTRQHLLHY 185 THLEI P I GI A +IPYPEHN SPR T + M KQSLGL A+NY+IR DTR HLLHY Sbjct 636 THLEIWPSAILGIIASIIPYPEHNQSPRNTYQSAMAKQSLGLYASNYQIRTDTRAHLLHY 695 Query 186 PQLSMVKTQTTEQIGFDERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRT 245 PQ+ +V+T+ IG+++RPA N ++A+MSY G+N+ED+++MNK+S+ER + RS FFR Sbjct 696 PQMPLVQTRMLGVIGYNDRPAGANAILAIMSYTGYNMEDSIIMNKSSIERGMYRSTFFRL 755 Query 246 YEGEERRYPGGQEDRFEIPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPP 305 Y EE +YPGGQED+ P V+G +G++ Y L+++G+V+PE +V VL+GK SPP Sbjct 756 YSTEEVKYPGGQEDKIVTPEAGVKGYKGKDYYRLLEDNGVVSPEVEVKGGDVLIGKVSPP 815 Query 306 RFLEEPDDMGGLSP-QKRRETSVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDERIPEL 364 RFL+E + LSP Q +R+TS+ R GE+G+VD V + E +G+KL KV VRD RIPE+ Sbjct 816 RFLQEFKE---LSPEQAKRDTSIVTRHGENGIVDLVLITETLEGNKLVKVRVRDLRIPEI 872 Query 365 GDKFASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGS 424 GDKFA+RHGQKGV+G L Q DMP+T +G+VPD+++NPHALPSRMT+G I+E IGGK + Sbjct 873 GDKFATRHGQKGVVGILIDQVDMPYTAKGIVPDIILNPHALPSRMTIGQIMEAIGGKYAA 932 Query 425 MEGRRVDGTPFLGEDE-EDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKL 483 + G+ VD TPFL + ++++ + +G E +Y G TG+K+++ I G+++YQKL Sbjct 933 LSGKPVDATPFLETPKLQEMQKEILKLGHLPDSTEVVYDGRTGQKLKSRILFGIVYYQKL 992 Query 484 YHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDES 543 +HMV++K+HAR+RGPVQ+LTRQPTEGRAREGGLR GEMERD IG G AM +K+RLLD S Sbjct 993 HHMVADKMHARARGPVQILTRQPTEGRAREGGLRFGEMERDCLIGFGTAMLIKDRLLDNS 1052 Query 544 DREFIHICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGIAPRL 603 D+ ++IC CG + + R CP G+++ +H + +SYAFKLL+ E+ ++ I+PRL Sbjct 1053 DKAVVYICDQCGYVGWYDRSKNRYVCPVHGDKSVLHPVTVSYAFKLLIQELMSMVISPRL 1112 Query 604 ELEDAV 609 L + V Sbjct 1113 ILGEKV 1118 >RecName: Full=DNA-directed RNA polymerase subunit Rpo2; AltName: Full=DNA-directed RNA polymerase subunit B [Saccharolobus solfataricus P2] Sequence ID: Q980R1.2 Length: 1124 Range 1: 516 to 1119 Score:669 bits(1725), Expect:0.0, Method:Compositional matrix adjust., Identities:323/607(53%), Positives:436/607(71%), Gaps:6/607(0%) Query 6 REAKVYVNGSLVGTHPDPHELAEQIREARRIGDVSEMVNVS--VKERTREVIINADAGRA 63 + +KV +NG L+G + D ELA +IRE RR G++S+ VNV V + EV +N D+GR Sbjct 516 KWSKVILNGRLIGYYQDGGELANKIRERRRKGEISDEVNVGHIVTDFINEVHVNCDSGRV 575 Query 64 RRPLLVVEDGEPRISEAEIEALRDGDLEFDDLVAHGYVEFIDAEEEEDIYVAVDEDDLEE 123 RRPL++V +G P ++ +IE L G + FDDLV G +E++DAEEEE+ YVA++ +DL Sbjct 576 RRPLIIVSNGNPLVTIEDIEKLESGAITFDDLVRQGKIEYLDAEEEENAYVALEPNDLTP 635 Query 124 EHTHLEIDPQLIFGIGAGMIPYPEHNASPRITMGAGMVKQSLGLPAANYRIRPDTRQHLL 183 +HTHLEI I GI A +IPYPEHN SPR T + M KQ+LGL AANY++R DTR HLL Sbjct 636 DHTHLEIWSPAILGITASIIPYPEHNQSPRNTYQSAMAKQALGLYAANYQLRTDTRAHLL 695 Query 184 HYPQLSMVKTQTTEQIGFDERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFF 243 HYPQ +V+T+ + IG+ RPA N ++AVMS+ G+N+ED+++MN++SVER + RS FF Sbjct 696 HYPQRPLVQTRALDIIGYTNRPAGNNAILAVMSFTGYNMEDSIIMNRSSVERGMYRSTFF 755 Query 244 RTYEGEERRYPGGQEDRFEIPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTS 303 R Y EE +YPGGQED+ +P VRG +G+E Y L+++G+V+PE +V VL+GK S Sbjct 756 RLYSTEEVKYPGGQEDKIVMPEAGVRGYKGKEYYRLLEDNGVVSPEVEVKGGDVLIGKVS 815 Query 304 PPRFLEEPDDMGGLSP-QKRRETSVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDERIP 362 PPRFL+E + LSP Q +R+TS+ R GE G+VD V + E +G+KL KV VRD RIP Sbjct 816 PPRFLQEFKE---LSPEQAKRDTSIVTRHGEMGIVDLVLITETAEGNKLVKVRVRDLRIP 872 Query 363 ELGDKFASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKL 422 +GDKFASRHGQKGVIG L PQ DMP+T +GVVPD+++NPHALPSRMT+G I+E I GK Sbjct 873 TIGDKFASRHGQKGVIGMLIPQVDMPYTVKGVVPDIILNPHALPSRMTLGQIMEGIAGKY 932 Query 423 GSMEGRRVDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQK 482 ++ G VD TPF E L++ + G+ E +Y G TG+KI++ I+ GV++YQK Sbjct 933 AALSGNIVDATPFYKTPIEQLQNEILRYGYLPDATEVVYDGRTGQKIKSRIYFGVVYYQK 992 Query 483 LYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDE 542 L+HMV++KLHAR+RGPVQ+LTRQPTEGRAREGGLR GEMERD IG G AM LK+RLLD Sbjct 993 LHHMVADKLHARARGPVQILTRQPTEGRAREGGLRFGEMERDCLIGFGTAMLLKDRLLDN 1052 Query 543 SDREFIHICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGIAPR 602 SDR I++C CG + + + CP G+++++ + +SYAFKLL+ E+ ++ I+PR Sbjct 1053 SDRTMIYVCDQCGYIGWYDKNKNKYVCPIHGDKSNLFPVTVSYAFKLLIQELMSMIISPR 1112 Query 603 LELEDAV 609 L LED V Sbjct 1113 LVLEDKV 1119 >RecName: Full=DNA-directed RNA polymerase subunit Rpo2; AltName: Full=DNA-directed RNA polymerase subunit beta [Saccharolobus shibatae B12] Sequence ID: B8YB55.2 Length: 1128 Range 1: 516 to 1119 Score:667 bits(1720), Expect:0.0, Method:Compositional matrix adjust., Identities:323/607(53%), Positives:435/607(71%), Gaps:6/607(0%) Query 6 REAKVYVNGSLVGTHPDPHELAEQIREARRIGDVSEMVNVS--VKERTREVIINADAGRA 63 + +KV +NG LVG + D ELA++IRE RR G++S+ VNV V + EV +N D+GR Sbjct 516 KWSKVILNGRLVGYYRDGEELAKKIRERRRKGEISDEVNVGHIVTDFINEVHVNCDSGRV 575 Query 64 RRPLLVVEDGEPRISEAEIEALRDGDLEFDDLVAHGYVEFIDAEEEEDIYVAVDEDDLEE 123 RRPL++V +G P ++ +IE L G + FDDLV G +E++DAEEEE+ YVA++ DL Sbjct 576 RRPLIIVSNGNPLVTREDIEKLDSGSITFDDLVRQGKIEYLDAEEEENAYVALEPSDLTP 635 Query 124 EHTHLEIDPQLIFGIGAGMIPYPEHNASPRITMGAGMVKQSLGLPAANYRIRPDTRQHLL 183 EHTHLEI I GI A +IPYPEHN SPR T + M KQ+LGL AANY++R DTR HLL Sbjct 636 EHTHLEIWSPAILGITASIIPYPEHNQSPRNTYQSAMAKQALGLYAANYQLRTDTRAHLL 695 Query 184 HYPQLSMVKTQTTEQIGFDERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFF 243 HYPQ +V+T+ + IG+ RPA N ++AV+S+ G+N+ED+++MN++SVER + RS FF Sbjct 696 HYPQRPLVQTRALDIIGYTNRPAGNNAILAVISFTGYNMEDSIIMNRSSVERGMYRSTFF 755 Query 244 RTYEGEERRYPGGQEDRFEIPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTS 303 R Y EE +YPGGQED+ +P VRG +G+E Y L+++G+V+PE +V VL+GK S Sbjct 756 RLYSTEEVKYPGGQEDKIVMPEPGVRGYKGKEYYRLLEDNGVVSPEVEVKGGDVLIGKVS 815 Query 304 PPRFLEEPDDMGGLSP-QKRRETSVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDERIP 362 PPRFL+E + LSP Q +R+TS+ R GE G+VD V + E +G+KL KV VRD RIP Sbjct 816 PPRFLQEFKE---LSPEQAKRDTSIVTRHGEMGIVDLVLITETAEGNKLVKVRVRDLRIP 872 Query 363 ELGDKFASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKL 422 +GDKFASRHGQKGVIG L PQ DMP+T +GVVPD+++NPHALPSRMT+G I+E I GK Sbjct 873 SIGDKFASRHGQKGVIGMLIPQVDMPYTVKGVVPDVILNPHALPSRMTLGQIMEGIAGKY 932 Query 423 GSMEGRRVDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQK 482 ++ G VD TPF E L++ + G+ E Y G TG+KI++ I+ GV++YQK Sbjct 933 AALSGNIVDATPFYKTPIEQLQNEILKYGYLPDATEVTYDGRTGQKIKSRIYFGVVYYQK 992 Query 483 LYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDE 542 L+HMV++K+HAR+RGPVQ+LTRQPTEGRAREGGLR GEMERD IG G AM LK+RLLD Sbjct 993 LHHMVADKIHARARGPVQILTRQPTEGRAREGGLRFGEMERDCLIGFGTAMLLKDRLLDN 1052 Query 543 SDREFIHICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGIAPR 602 SDR I++C CG + + + CP G+++++ + +SYAFKLL+ E+ ++ I+PR Sbjct 1053 SDRTTIYVCDQCGYIGWYDKNKNKYVCPIHGDKSNLFPVTVSYAFKLLIQELMSMIISPR 1112 Query 603 LELEDAV 609 L LED V Sbjct 1113 LILEDRV 1119 >RecName: Full=DNA-directed RNA polymerase II subunit rpb2; Short=RNA polymerase II subunit 2; Short=RNA polymerase II subunit B2 [Dictyostelium discoideum] Sequence ID: Q54J75.1 Length: 1170 Range 1: 556 to 1166 Score:546 bits(1408), Expect:0.0, Method:Compositional matrix adjust., Identities:275/616(45%), Positives:389/616(63%), Gaps:18/616(2%) Query 1 MSSQQREAKVYVNGSLVGTHPDPHELAEQIREARRIGDVSEMVNVSVKERTREVIINADA 60 +SS K++VNG VG H P +L +R RR GDVS V+V R +E+ + D Sbjct 556 LSSIFSATKIFVNGMWVGIHHQPDKLLSTLRLLRRCGDVSVEVSVVRDIREKELRLYTDP 615 Query 61 GRARRPLLVVEDGEPRISEAEIEALRDGD-LEFDDLVAHGYVEFIDAEEEEDIYVAVDED 119 GR RPL VV+D + +I + I L + D ++ DL++ G VE+IDAEEEE + +A+ + Sbjct 616 GRCCRPLFVVQDNKVQIKKQHINKLINNDEYKWQDLLSEGIVEYIDAEEEETVLIAMTPE 675 Query 120 DLE--------EEHTHLEIDPQLIFGIGAGMIPYPEHNASPRITMGAGMVKQSLGLPAAN 171 DL +TH EI P +I GI +IP+P+HN SPR T A M KQ++G+ N Sbjct 676 DLVPMPNEQIVHTYTHCEIHPSMILGICCSIIPFPDHNQSPRNTYQAAMGKQAMGVYITN 735 Query 172 YRIRPDTRQHLLHYPQLSMVKTQTTEQIGFDERPAAQNFVVAVMSYEGFNIEDALVMNKA 231 Y++R DT H+L YPQ +V T++ E + F E PA QN VA+ Y G+N ED++++N++ Sbjct 736 YQLRMDTMAHVLFYPQKPLVTTRSMEYLHFRELPAGQNVCVAIACYSGYNQEDSVILNQS 795 Query 232 SVERALARSHFFRTYEGEERRYPGGQEDRFEIPSQDVRGARGEEAYAHLDEDGLVNPETQ 291 +++R L RS F+R Y+ E+++ E+ FE P +D +Y +D+DGLV P + Sbjct 796 AIDRGLFRSMFYRAYKDEQKKQTSLMEEVFEKPERDTCAGMRHGSYEKIDDDGLVAPGVR 855 Query 292 VDENSVLLGKTSPPRFLEEPDDMGGLSPQKRRET----SVTMRSGESGVVDTVTLMEGED 347 V + +++GKT+P L DD L P+ RR T S +RS E+G+VD V L + Sbjct 856 VAGDDIIIGKTTP---LPPSDD--DLGPKTRRHTKRDSSTALRSSETGIVDQVILTTSGE 910 Query 348 GSKLSKVSVRDERIPELGDKFASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPS 407 G K KV VR R+P++GDKF+SRHGQKG G QED+PFT EG+VPD++VNPHA+PS Sbjct 911 GFKFCKVRVRSMRVPQIGDKFSSRHGQKGTCGMAYRQEDLPFTVEGIVPDIIVNPHAIPS 970 Query 408 RMTVGHILEMIGGKLGSMEGRRVDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGE 467 RMT+G ++E + GK+ + G D TPF E + L +G+ G E MY+G TG Sbjct 971 RMTIGQLIECLLGKVSASTGDEGDATPFTDVTVEAISQALHKIGYQMTGHEVMYNGHTGR 1030 Query 468 KIEAEIFVGVIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFI 527 +++A+IF+G +YQ+L HMV +K+H+RSRGPVQ+LTRQP EGR+R+GGLR GEMERD I Sbjct 1031 RMDAQIFIGPTYYQRLKHMVDDKIHSRSRGPVQILTRQPVEGRSRDGGLRFGEMERDCMI 1090 Query 528 GHGAAMTLKERLLDESDREFIHICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAF 587 HGAA LKERL D+SD +HIC CG+ A N+++ C C +T I +I M YA Sbjct 1091 SHGAAQFLKERLFDQSDSYRVHICDICGLIAIANLKKNSFECRRCKNKTQISQIRMPYAA 1150 Query 588 KLLLDEMKALGIAPRL 603 KLL E+ ++ IAPR+ Sbjct 1151 KLLFQELMSMSIAPRM 1166 >RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA polymerase II subunit 2; Short=RNA polymerase II subunit B2 [Encephalitozoon cuniculi GB-M1] Sequence ID: Q8SR75.1 Length: 1141 Range 1: 528 to 1141 Score:543 bits(1399), Expect:4e-180, Method:Compositional matrix adjust., Identities:271/620(44%), Positives:400/620(64%), Gaps:19/620(3%) Query 1 MSSQQREA--KVYVNGSLVGTHPDPHELAEQIREARRIGDVSEMVNVSVKERTREVIINA 58 +S+ Q +A K++VNG VG H DP L + ++ RR ++ + V++ R +E+ + + Sbjct 528 ISTSQLDAATKIFVNGVWVGIHSDPVGLIKSLKLLRRSLEMDKEVSIVRDIREKEIRVQS 587 Query 59 DAGRARRPLLVVEDGEPRISEAEIEALRDGDLEFDDLVAHGYVEFIDAEEEEDIYVAVDE 118 DAGR RPLLVV+D + I+ +I L+ G++++D+LV G++EF+D EEEE +A++ Sbjct 588 DAGRPCRPLLVVKDNKLVITAEDIRKLKRGEIKWDNLVTSGFIEFLDVEEEEMSMIAMNT 647 Query 119 DDLEEE----------HTHLEIDPQLIFGIGAGMIPYPEHNASPRITMGAGMVKQSLGLP 168 L +E +TH EI P LI GI A IP+P+HN SPR T + M KQ++G+ Sbjct 648 KILADESRNSSDVSVSYTHCEIHPALILGICASTIPFPDHNQSPRNTYQSAMGKQAMGIY 707 Query 169 AANYRIRPDTRQHLLHYPQLSMVKTQTTEQIGFDERPAAQNFVVAVMSYEGFNIEDALVM 228 A N+ +R DT ++L YPQ +V T++ E + F E P+ QN +VA+ Y G+N ED+++M Sbjct 708 ATNFLLRMDTLSNILFYPQKPLVTTKSMEYLRFKELPSGQNALVAIACYSGYNQEDSIIM 767 Query 229 NKASVERALARSHFFRTYEGEERRYPGGQEDRFEIPSQDVRGARGEEAYAHLDEDGLVNP 288 N+++++R L RS F+RTY +E G + F PS+ Y LD+DGL++P Sbjct 768 NQSAIDRGLFRSFFYRTYTDQESMSRPGVNEEFCKPSRGAVLRMKNLNYNKLDDDGLISP 827 Query 289 ETQVDENSVLLGKTSPPRFLEEPDDMGGLSP-QKRRETSVTMRSGESGVVDTVTLMEGED 347 T+V + VL+GK +P + +P+ +P +++S MR E+G+VDTV ++ +D Sbjct 828 GTRVTGDDVLIGKITP---ILDPERSTKEAPVYVYKDSSTAMRRTETGIVDTV-IVTNKD 883 Query 348 GSKLSKVSVRDERIPELGDKFASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPS 407 G K SKV VR RIP++GDKFASRH QKG IG QEDMPFT EG+VPD+++NPHA+PS Sbjct 884 GYKFSKVKVRSGRIPQMGDKFASRHAQKGTIGITLRQEDMPFTSEGIVPDIIINPHAIPS 943 Query 408 RMTVGHILEMIGGKLGSMEGRRVDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGE 467 RMT+GH++E + GK+ +M G D TPF G + + S L+ GF G E MY+G+TG Sbjct 944 RMTIGHLIECLLGKVSAMSGEEGDATPFSGVTVDGISSRLKSYGFQQRGLEVMYNGMTGR 1003 Query 468 KIEAEIFVGVIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFI 527 K+ A++F G +YQ+L HMV +K+HAR+RGP+Q+LTRQP EGR+R+GGLR GEMERD I Sbjct 1004 KLRAQMFFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEMERDCII 1063 Query 528 GHGAAMTLKERLLDESDREFIHICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAF 587 HGA+ LKERL+D SD ++C CG+ A + C C T++ +E+ YAF Sbjct 1064 SHGASAFLKERLMDVSDAYSCYVCDFCGLLAMGGSKVNE--CKGCNNTTNVSMVEIPYAF 1121 Query 588 KLLLDEMKALGIAPRLELED 607 KLL+ E+ + IAPR+ E+ Sbjct 1122 KLLIQELMGMNIAPRIRFEE 1141 >RecName: Full=DNA-directed RNA polymerase II subunit RPB2; AltName: Full=3'-5' exoribonuclease; AltName: Full=RNA-directed RNA polymerase II subunit RPB2 [Bos taurus] Sequence ID: A5PJW8.1 Length: 1174 Range 1: 565 to 1171 Score:524 bits(1349), Expect:2e-172, Method:Compositional matrix adjust., Identities:263/610(43%), Positives:389/610(63%), Gaps:17/610(2%) Query 8 AKVYVNGSLVGTHPDPHELAEQIREARRIGD--VSEMVNVSVKERTREVIINADAGRARR 65 K++VNG VG H DP +L +R+ RR D VSE V++ R RE+ I DAGR R Sbjct 565 TKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE-VSMIRDIREREIRIYTDAGRICR 623 Query 66 PLLVVEDGEPRISEAEIEALRD---GDLEFDDLVAHGYVEFIDAEEEEDIYVAVDEDDLE 122 PLL+VE + + + I+ L++ + + DLVA G VE+ID EEE + +A+ DDL+ Sbjct 624 PLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQ 683 Query 123 EE-------HTHLEIDPQLIFGIGAGMIPYPEHNASPRITMGAGMVKQSLGLPAANYRIR 175 E+ +TH EI P +I G+ A +IP+P+HN SPR T + M KQ++G+ N+ +R Sbjct 684 EKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVR 743 Query 176 PDTRQHLLHYPQLSMVKTQTTEQIGFDERPAAQNFVVAVMSYEGFNIEDALVMNKASVER 235 DT H+L+YPQ +V T++ E + F E PA N +VA+ SY G+N ED+++MN+++V+R Sbjct 744 MDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDR 803 Query 236 ALARSHFFRTYEGEERRYPGGQEDRFEIPSQDVRGARGEEAYAHLDEDGLVNPETQVDEN 295 RS F+R+Y+ +E + QE+ FE P+++ Y LD+DGL+ P +V + Sbjct 804 GFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGD 863 Query 296 SVLLGKTSPPRFLEEPDDMGGLSPQ-KRRETSVTMRSGESGVVDTVTLMEGEDGSKLSKV 354 V++GKT E D++ G + + +R+ S +R+ E+G+VD V + ++G K K+ Sbjct 864 DVIIGKTVT--LPENEDELEGTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKI 921 Query 355 SVRDERIPELGDKFASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHI 414 VR RIP++GDKFASRHGQKG G QEDMPFT EG+ PD+++NPHA+PSRMT+GH+ Sbjct 922 RVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHL 981 Query 415 LEMIGGKLGSMEGRRVDGTPFL-GEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEI 473 +E + GK+ + +G D TPF + + + + L D G++ G E +Y+G TG KI ++I Sbjct 982 IECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQI 1041 Query 474 FVGVIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAM 533 F+G +YQ+L HMV +K+H+R+RGP+Q+L RQP EGR+R+GGLR GEMERD I HGAA Sbjct 1042 FIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQ 1101 Query 534 TLKERLLDESDREFIHICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDE 593 L+ERL + SD +H+C CG+ A N C C +T I + M YA KLL E Sbjct 1102 FLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQE 1161 Query 594 MKALGIAPRL 603 + ++ IAPR+ Sbjct 1162 LMSMSIAPRM 1171 >RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA polymerase II subunit 2; Short=RNA polymerase II subunit B2; AltName: Full=DNA-directed RNA polymerase II 140 kDa polypeptide; AltName: Full=RNA polymerase II subunit B [Drosophila melanogaster] Sequence ID: P08266.2 Length: 1176 Range 1: 566 to 1173 Score:524 bits(1349), Expect:2e-172, Method:Compositional matrix adjust., Identities:267/612(44%), Positives:386/612(63%), Gaps:20/612(3%) Query 8 AKVYVNGSLVGTHPDPHELAEQIREARRIGD--VSEMVNVSVKERTREVIINADAGRARR 65 K++VNG VG H DP +L +R+ RR D VSE V++ R RE+ I DAGR R Sbjct 566 TKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSE-VSMIRDIRDREIRIYTDAGRICR 624 Query 66 PLLVVEDGEPRISEAEIEALRDGDLE---FDDLVAHGYVEFIDAEEEEDIYVAVDEDDLE 122 PLL+VE+G + + +E L++ D + LVA G VE+ID EEE + +A+ DL+ Sbjct 625 PLLIVENGSLLLKKTHVEMLKERDYNNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLK 684 Query 123 EE--------HTHLEIDPQLIFGIGAGMIPYPEHNASPRITMGAGMVKQSLGLPAANYRI 174 ++ +TH EI P +I G+ A +IP+P+HN SPR T + M KQ++G+ N+ + Sbjct 685 QDKDYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHV 744 Query 175 RPDTRQHLLHYPQLSMVKTQTTEQIGFDERPAAQNFVVAVMSYEGFNIEDALVMNKASVE 234 R DT H+L+YP +V T++ E + F E PA N +VA++ Y G+N ED++++N ++VE Sbjct 745 RMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVE 804 Query 235 RALARSHFFRTYEGEERRYPGGQEDRFEIPSQDVRGARGEEAYAHLDEDGLVNPETQVDE 294 R RS F+R+Y+ E + G QE+ FE P + Y LD+DG++ P +V Sbjct 805 RGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSG 864 Query 295 NSVLLGKTSPPRFLEEPDDMGGLSPQK--RRETSVTMRSGESGVVDTVTLMEGEDGSKLS 352 + V++GKT L E DD + ++ +R+ S +R+ E+G+VD V L +G K Sbjct 865 DDVVIGKTIT---LPENDDELDSNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEGYKFC 921 Query 353 KVSVRDERIPELGDKFASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVG 412 K+ VR RIP++GDKFASRHGQKG G QEDM FT EG+ PD+++NPHA+PSRMT+G Sbjct 922 KIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIG 981 Query 413 HILEMIGGKLGSMEGRRVDGTPFL-GEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEA 471 H++E + GKLGS +G D TPF + + + + L++ G++ G E MY+G TG KI A Sbjct 982 HLIECLQGKLGSNKGEIGDATPFNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINA 1041 Query 472 EIFVGVIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGA 531 ++F+G +YQ+L HMV +K+H+R+RGPVQ+L RQP EGRAR+GGLR GEMERD I HGA Sbjct 1042 QVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGA 1101 Query 532 AMTLKERLLDESDREFIHICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLL 591 A L+ERL + SD +HIC CG+ A N+ C C +T I ++ + YA KLL Sbjct 1102 AQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLF 1161 Query 592 DEMKALGIAPRL 603 E+ ++ IAPRL Sbjct 1162 QELMSMNIAPRL 1173 >RecName: Full=DNA-directed RNA polymerase II subunit RPB2; AltName: Full=3'-5' exoribonuclease; AltName: Full=DNA-directed RNA polymerase II 140 kDa polypeptide; AltName: Full=DNA-directed RNA polymerase II subunit B; AltName: Full=RNA polymerase II subunit 2; AltName: Full=RNA polymerase II subunit B2; AltName: Full=RNA-directed RNA polymerase II subunit RPB2 [Mus musculus] Sequence ID: Q8CFI7.2 Length: 1174 Range 1: 565 to 1171 Score:523 bits(1346), Expect:6e-172, Method:Compositional matrix adjust., Identities:264/613(43%), Positives:387/613(63%), Gaps:23/613(3%) Query 8 AKVYVNGSLVGTHPDPHELAEQIREARRIGD--VSEMVNVSVKERTREVIINADAGRARR 65 K++VNG VG H DP +L +R+ RR D VSE V++ R RE+ I DAGR R Sbjct 565 TKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE-VSMIRDIREREIRIYTDAGRICR 623 Query 66 PLLVVEDGEPRISEAEIEALRD---GDLEFDDLVAHGYVEFIDAEEEEDIYVAVDEDDLE 122 PLL+VE + + + I+ L++ + + DLVA G VE+ID EEE + +A+ DDL+ Sbjct 624 PLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQ 683 Query 123 EE-------HTHLEIDPQLIFGIGAGMIPYPEHNASPRITMGAGMVKQSLGLPAANYRIR 175 E+ +TH EI P +I G+ A +IP+P+HN SPR T + M KQ++G+ N+ +R Sbjct 684 EKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVR 743 Query 176 PDTRQHLLHYPQLSMVKTQTTEQIGFDERPAAQNFVVAVMSYEGFNIEDALVMNKASVER 235 DT H+L+YPQ +V T++ E + F E PA N +VA+ SY G+N ED+++MN+++V+R Sbjct 744 MDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDR 803 Query 236 ALARSHFFRTYEGEERRYPGGQEDRFEIPSQDVRGARGEEAYAHLDEDGLVNPETQVDEN 295 RS F+R+Y+ +E + QE+ FE P+++ Y LD+DGL+ P +V + Sbjct 804 GFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYEKLDDDGLIAPGVRVSGD 863 Query 296 SVLLGKTSPPRFLEEPDDMGGLSPQKRRET----SVTMRSGESGVVDTVTLMEGEDGSKL 351 V++GKT + P++ L RR T S +R+ E+G+VD V + ++G K Sbjct 864 DVIIGKT-----VTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKF 918 Query 352 SKVSVRDERIPELGDKFASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTV 411 K+ VR RIP++GDKFASRHGQKG G QEDMPFT EG+ PD+++NPHA+PSRMT+ Sbjct 919 CKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTI 978 Query 412 GHILEMIGGKLGSMEGRRVDGTPFL-GEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIE 470 GH++E + GK+ + +G D TPF + + + + L D G++ G E +Y+G TG KI Sbjct 979 GHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKIT 1038 Query 471 AEIFVGVIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHG 530 ++IF+G +YQ+L HMV +K+H+R+RGP+Q+L RQP EGR+R+GGLR GEMERD I HG Sbjct 1039 SQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHG 1098 Query 531 AAMTLKERLLDESDREFIHICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLL 590 AA L+ERL + SD +H+C CG+ A N C C +T I + M YA KLL Sbjct 1099 AAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLL 1158 Query 591 LDEMKALGIAPRL 603 E+ ++ IAPR+ Sbjct 1159 FQELMSMSIAPRM 1171 >RecName: Full=DNA-directed RNA polymerase II subunit RPB2; AltName: Full=3'-5' exoribonuclease; AltName: Full=DNA-directed RNA polymerase II 140 kDa polypeptide; AltName: Full=DNA-directed RNA polymerase II subunit B; AltName: Full=RNA polymerase II subunit 2; AltName: Full=RNA polymerase II subunit B2; AltName: Full=RNA-directed RNA polymerase II subunit RPB2 [Homo sapiens] Sequence ID: P30876.1 Length: 1174 Range 1: 565 to 1171 Score:522 bits(1345), Expect:7e-172, Method:Compositional matrix adjust., Identities:264/613(43%), Positives:387/613(63%), Gaps:23/613(3%) Query 8 AKVYVNGSLVGTHPDPHELAEQIREARRIGD--VSEMVNVSVKERTREVIINADAGRARR 65 K++VNG VG H DP +L +R+ RR D VSE V++ R RE+ I DAGR R Sbjct 565 TKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE-VSMIRDIREREIRIYTDAGRICR 623 Query 66 PLLVVEDGEPRISEAEIEALRD---GDLEFDDLVAHGYVEFIDAEEEEDIYVAVDEDDLE 122 PLL+VE + + + I+ L++ + + DLVA G VE+ID EEE + +A+ DDL+ Sbjct 624 PLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQ 683 Query 123 EE-------HTHLEIDPQLIFGIGAGMIPYPEHNASPRITMGAGMVKQSLGLPAANYRIR 175 E+ +TH EI P +I G+ A +IP+P+HN SPR T + M KQ++G+ N+ +R Sbjct 684 EKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVR 743 Query 176 PDTRQHLLHYPQLSMVKTQTTEQIGFDERPAAQNFVVAVMSYEGFNIEDALVMNKASVER 235 DT H+L+YPQ +V T++ E + F E PA N +VA+ SY G+N ED+++MN+++V+R Sbjct 744 MDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDR 803 Query 236 ALARSHFFRTYEGEERRYPGGQEDRFEIPSQDVRGARGEEAYAHLDEDGLVNPETQVDEN 295 RS F+R+Y+ +E + QE+ FE P+++ Y LD+DGL+ P +V + Sbjct 804 GFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGD 863 Query 296 SVLLGKTSPPRFLEEPDDMGGLSPQKRRET----SVTMRSGESGVVDTVTLMEGEDGSKL 351 V++GKT + P++ L RR T S +R+ E+G+VD V + ++G K Sbjct 864 DVIIGKT-----VTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKF 918 Query 352 SKVSVRDERIPELGDKFASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTV 411 K+ VR RIP++GDKFASRHGQKG G QEDMPFT EG+ PD+++NPHA+PSRMT+ Sbjct 919 CKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTI 978 Query 412 GHILEMIGGKLGSMEGRRVDGTPFL-GEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIE 470 GH++E + GK+ + +G D TPF + + + + L D G++ G E +Y+G TG KI Sbjct 979 GHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKIT 1038 Query 471 AEIFVGVIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHG 530 ++IF+G +YQ+L HMV +K+H+R+RGP+Q+L RQP EGR+R+GGLR GEMERD I HG Sbjct 1039 SQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHG 1098 Query 531 AAMTLKERLLDESDREFIHICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLL 590 AA L+ERL + SD +H+C CG+ A N C C +T I + M YA KLL Sbjct 1099 AAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLL 1158 Query 591 LDEMKALGIAPRL 603 E+ ++ IAPR+ Sbjct 1159 FQELMSMSIAPRM 1171 >RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA polymerase II subunit 2; Short=RNA polymerase II subunit B2; AltName: Full=DNA-directed RNA polymerase II 135 kDa polypeptide [Solanum lycopersicum] Sequence ID: Q42877.1 Length: 1191 Range 1: 568 to 1180 Score:520 bits(1340), Expect:7e-171, Method:Compositional matrix adjust., Identities:265/616(43%), Positives:380/616(61%), Gaps:18/616(2%) Query 8 AKVYVNGSLVGTHPDPHELAEQIREARRIGDVSEMVNVSVKERTREVIINADAGRARRPL 67 K++VNG+ VG H DP L +R RR DV+ V V R +E+ I D GR RPL Sbjct 568 TKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPL 627 Query 68 LVVEDGEPRISEAEIEALRDGDLE----FDDLVAHGYVEFIDAEEEEDIYVAVDEDDL-- 121 +VE I + +I+ L+ + + DLVA GY+E+ID EEEE +++ +DL Sbjct 628 FIVEKQRLMIKKKDIQTLQQRESPDEGGWHDLVAKGYIEYIDTEEEETTMISMTINDLVQ 687 Query 122 ---------EEEHTHLEIDPQLIFGIGAGMIPYPEHNASPRITMGAGMVKQSLGLPAANY 172 + +TH EI P LI G+ A +IP+P+HN SPR T + M KQ++G+ NY Sbjct 688 ARLNPGDAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNY 747 Query 173 RIRPDTRQHLLHYPQLSMVKTQTTEQIGFDERPAAQNFVVAVMSYEGFNIEDALVMNKAS 232 + R DT ++L+YPQ +V T+ E + F + PA N +VA+ Y G+N ED+++MN++S Sbjct 748 QFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSS 807 Query 233 VERALARSHFFRTYEGEERRYPGGQEDRFEIPSQDVRGARGEEAYAHLDEDGLVNPETQV 292 ++R RS FFR+Y EE++ ++ F P + +Y LD+DGL P T+V Sbjct 808 IDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRASTMGMRHGSYDKLDDDGLAPPGTRV 867 Query 293 DENSVLLGKTSPPRFLEEPDDMGGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLS 352 V++GKT+P + + D G S R++ S ++R E+G+VD V L DG + Sbjct 868 SGEDVIIGKTTP---ISQDDAQGQASRYTRKDHSTSLRHSETGMVDQVLLTTNADGLRFV 924 Query 353 KVSVRDERIPELGDKFASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVG 412 KV VR RIP++GDKF+SRHGQKG +G QEDMP+T EG+ PD++VNPHA+PSRMT+G Sbjct 925 KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 984 Query 413 HILEMIGGKLGSMEGRRVDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAE 472 ++E I GK+ + G+ D TPF +++ L G+ G ETMY+G TG ++ A Sbjct 985 QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAM 1044 Query 473 IFVGVIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAA 532 IF+G +YQ+L HMV +K+H+R RGPVQ+LTRQP EGR+R+GGLR GEMERD I HGAA Sbjct 1045 IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA 1104 Query 533 MTLKERLLDESDREFIHICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLD 592 LKERL D+SD +H+C CG+ A N+++ C C +TDI ++ + YA KLL Sbjct 1105 HFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQ 1164 Query 593 EMKALGIAPRLELEDA 608 E+ A+ IAPR+ +D Sbjct 1165 ELMAMAIAPRMLTKDV 1180 >RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA polymerase II subunit 2; AltName: Full=B150; AltName: Full=DNA-directed RNA polymerase II 140 kDa polypeptide [Saccharomyces cerevisiae S288C] Sequence ID: P08518.2 Length: 1224 Range 1: 578 to 1216 Score:517 bits(1331), Expect:3e-169, Method:Compositional matrix adjust., Identities:275/641(43%), Positives:387/641(60%), Gaps:47/641(7%) Query 8 AKVYVNGSLVGTHPDPHELAEQIREARRIGDVSEMVNVSVKERTREVIINADAGRARRPL 67 +V+VNG G H +P L E +R RR GD++ V++ R +E+ I DAGR RPL Sbjct 578 TRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPL 637 Query 68 LVVEDGEP--------------RISEAEIEALRDG--DLE---FDDLVAHGYVEFIDAEE 108 +VED E ++ E + + G D+E + L+ G VE+IDAEE Sbjct 638 FIVEDDESLGHKELKVRKGHIAKLMATEYQDIEGGFEDVEEYTWSSLLNEGLVEYIDAEE 697 Query 109 EEDIYVAVDEDDLE-----EEH-------------------THLEIDPQLIFGIGAGMIP 144 EE I +A+ +DLE EE+ TH EI P +I G+ A +IP Sbjct 698 EESILIAMQPEDLEPAEANEENDLDVDPAKRIRVSHHATTFTHCEIHPSMILGVAASIIP 757 Query 145 YPEHNASPRITMGAGMVKQSLGLPAANYRIRPDTRQHLLHYPQLSMVKTQTTEQIGFDER 204 +P+HN SPR T + M KQ++G+ NY +R DT ++L+YPQ + T+ E + F E Sbjct 758 FPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFREL 817 Query 205 PAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGEERRYPGGQEDRFEIP 264 PA QN +VA+ Y G+N ED+++MN++S++R L RS FFR+Y +E++Y + FE P Sbjct 818 PAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKP 877 Query 265 SQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPPRFLEEPDDMGGLSP-QKRR 323 + Y LD+DGL+ P +V V++GKT+P EE ++G + +R Sbjct 878 QRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGKTTPISPDEE--ELGQRTAYHSKR 935 Query 324 ETSVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDERIPELGDKFASRHGQKGVIGHLAP 383 + S +RS E+G+VD V + +DG K KV VR +IP++GDKFASRHGQKG IG Sbjct 936 DASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYR 995 Query 384 QEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSMEGRRVDGTPFLGEDEEDL 443 +EDMPFT EG+VPDL++NPHA+PSRMTV H++E + K+ ++ G D +PF E + Sbjct 996 REDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGI 1055 Query 444 RSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVSNKLHARSRGPVQVLT 503 L + G+ S G E MY+G TG+K+ A+IF G +YQ+L HMV +K+HAR+RGP+QVLT Sbjct 1056 SKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLT 1115 Query 504 RQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIHICGNCG-MTATENV 562 RQP EGR+R+GGLR GEMERD I HGAA LKERL++ SD +HICG CG MT + Sbjct 1116 RQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERLMEASDAFRVHICGICGLMTVIAKL 1175 Query 563 EQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGIAPRL 603 + C C + DI++I + YA KLL E+ A+ I PRL Sbjct 1176 NHNQFECKGCDNKIDIYQIHIPYAAKLLFQELMAMNITPRL 1216 >RecName: Full=DNA-directed RNA polymerase II subunit 2; AltName: Full=DNA-directed RNA polymerase II 135 kDa polypeptide; AltName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA polymerase II subunit 2; Short=RNA polymerase II subunit B2; AltName: Full=Protein EMBRYO DEFECTIVE 1989 [Arabidopsis thaliana] Sequence ID: P38420.2 Length: 1188 Range 1: 569 to 1176 Score:515 bits(1327), Expect:4e-169, Method:Compositional matrix adjust., Identities:263/611(43%), Positives:378/611(61%), Gaps:18/611(2%) Query 8 AKVYVNGSLVGTHPDPHELAEQIREARRIGDVSEMVNVSVKERTREVIINADAGRARRPL 67 K++VNG VG H DP L + +R RR DV+ V V R +E+ I D GR RPL Sbjct 569 TKIFVNGMWVGVHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPL 628 Query 68 LVVEDGEPRISEAEIEALRDGDLEFDD----LVAHGYVEFIDAEEEEDIYVAVDEDDL-- 121 +V++ + I + +I AL+ + +D LVA G++E+ID EEEE +++ DL Sbjct 629 FIVDNQKLLIKKRDIYALQQRESAEEDGWHHLVAKGFIEYIDTEEEETTMISMTISDLVQ 688 Query 122 ---------EEEHTHLEIDPQLIFGIGAGMIPYPEHNASPRITMGAGMVKQSLGLPAANY 172 E +TH EI P LI G+ A +IP+P+HN SPR T + M KQ++G+ NY Sbjct 689 ARLRPEEAYTENYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNY 748 Query 173 RIRPDTRQHLLHYPQLSMVKTQTTEQIGFDERPAAQNFVVAVMSYEGFNIEDALVMNKAS 232 + R DT ++L+YPQ +V T+ E + F + PA N +VA+ Y G+N ED+++MN++S Sbjct 749 QFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSS 808 Query 233 VERALARSHFFRTYEGEERRYPGGQEDRFEIPSQDVRGARGEEAYAHLDEDGLVNPETQV 292 ++R RS FFR+Y EE++ ++ F P + +Y LD+DGL P T+V Sbjct 809 IDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRGSTMGMRHGSYDKLDDDGLAPPGTRV 868 Query 293 DENSVLLGKTSPPRFLEEPDDMGGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLS 352 V++GKT+P + + + G S RR+ S+++R E+G+VD V L DG + Sbjct 869 SGEDVIIGKTTP---ISQDEAQGQSSRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFV 925 Query 353 KVSVRDERIPELGDKFASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVG 412 KV VR RIP++GDKF+SRHGQKG +G QEDMP+T EGV PD++VNPHA+PSRMT+G Sbjct 926 KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGVTPDIIVNPHAIPSRMTIG 985 Query 413 HILEMIGGKLGSMEGRRVDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAE 472 ++E I GK+ + G+ D TPF +++ L G+ G E MY+G TG + A Sbjct 986 QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFERMYNGHTGRPLTAM 1045 Query 473 IFVGVIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAA 532 IF+G +YQ+L HMV +K+H+R RGPVQ+LTRQP EGR+R+GGLR GEMERD I HGAA Sbjct 1046 IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA 1105 Query 533 MTLKERLLDESDREFIHICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLD 592 LKERL D+SD +H+C CG+ A N+++ C C +TDI ++ + YA KLL Sbjct 1106 HFLKERLFDQSDAYRVHVCEVCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQ 1165 Query 593 EMKALGIAPRL 603 E+ ++ IAPR+ Sbjct 1166 ELMSMAIAPRM 1176 >RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA polymerase II subunit 2; Short=RNA polymerase II subunit B2 [Meyerozyma guilliermondii ATCC 6260] Sequence ID: A5DHT2.3 Length: 1236 Range 1: 566 to 1228 Score:516 bits(1330), Expect:6e-169, Method:Compositional matrix adjust., Identities:272/665(41%), Positives:390/665(58%), Gaps:62/665(9%) Query 2 SSQQREAKVYVNGSLVGTHPDPHELAEQIREARRIGDVSEMVNVSVKERTREVIINADAG 61 S+ +V+VNG VGTH +P L + +R RR GD+S V++ R +E I DAG Sbjct 566 SNSPDSTRVFVNGVWVGTHREPAHLVDTMRSLRRRGDISPEVSIIRDIREKEFKIFTDAG 625 Query 62 RARRPLLVVED-------GEPRISEAEIEAL----------------RDGDLEFDDLVAH 98 R RPL +V+D GE ++ + I L +G + LV Sbjct 626 RVYRPLFIVDDDPESETKGELKLQKEHIHKLLNAEYSEEYATNEFGEEEGPYGWSSLVND 685 Query 99 GYVEFIDAEEEEDIYVAVDEDDLEEEHT-------------------------------- 126 G VE++DAEEEE I +A+ +DLE + Sbjct 686 GVVEYVDAEEEETIMIAMTPEDLEASKSSLTATQQKSLQLEEQELDPAKRIKPTNSSTTS 745 Query 127 ---HLEIDPQLIFGIGAGMIPYPEHNASPRITMGAGMVKQSLGLPAANYRIRPDTRQHLL 183 H EI P +I G+ A +IP+P+HN SPR T + M KQ++G+ NY +R DT ++L Sbjct 746 TFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYSVRMDTMANIL 805 Query 184 HYPQLSMVKTQTTEQIGFDERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFF 243 +YPQ + T+ E + F E PA QN +VA+ Y G+N ED+++MN++S++R L RS FF Sbjct 806 YYPQKPLATTRAMEHLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFF 865 Query 244 RTYEGEERRYPGGQEDRFEIPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTS 303 RTY E+R + FE PS+ Y LD+DGL+ P +V +++GKT+ Sbjct 866 RTYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIAPGIRVSGEDIIIGKTT 925 Query 304 PPRFLEEPDDMGGLSP-QKRRETSVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDERIP 362 P + +++G + +R+ S +RS ESG+VD V L DG+K KV +R ++P Sbjct 926 P--IPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTKVP 983 Query 363 ELGDKFASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKL 422 ++GDKFASRHGQKG +G EDMPFT +G+VPDL++NPHA+PSRMTV H++E + K+ Sbjct 984 QIGDKFASRHGQKGTVGVTYRHEDMPFTSQGIVPDLIINPHAIPSRMTVAHLIECLLSKV 1043 Query 423 GSMEGRRVDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQK 482 S+ G D +PF E + L + G+ S G E MY G TG+K+ A++F G +YQ+ Sbjct 1044 SSLSGLEGDASPFTDVTAEAVSKLLREHGYQSRGFEVMYHGHTGKKLMAQVFFGPTYYQR 1103 Query 483 LYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDE 542 L HMV +K+HAR+RGPVQVLTRQP EGR+R+GGLR GEMERD I HGAA LKERL++ Sbjct 1104 LRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEA 1163 Query 543 SDREFIHICGNCG-MTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGIAP 601 SD +H+CG CG M+ N+++ + C +C +T+I++I + YA KLL E+ A+ I+P Sbjct 1164 SDAFRVHVCGVCGLMSVIANLKKNQFECRSCKNKTNIYQIHIPYAAKLLFQELMAMNISP 1223 Query 602 RLELE 606 RL E Sbjct 1224 RLYTE 1228 >RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA polymerase II subunit 2; Short=RNA polymerase II subunit B2 [Nakaseomyces glabratus CBS 138] Sequence ID: Q6FLD5.1 Length: 1223 Range 1: 576 to 1215 Score:516 bits(1328), Expect:8e-169, Method:Compositional matrix adjust., Identities:268/642(42%), Positives:381/642(59%), Gaps:48/642(7%) Query 8 AKVYVNGSLVGTHPDPHELAEQIREARRIGDVSEMVNVSVKERTREVIINADAGRARRPL 67 +V+VNG G H +P L E +R RR GD++ V++ R +E+ I DAGR RPL Sbjct 576 TRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPEVSMIRDIREQELKIFTDAGRVYRPL 635 Query 68 LVVEDGE--------------PRISEAEIEALRDG-----DLEFDDLVAHGYVEFIDAEE 108 +VED E ++ E + + G D + L+ G VE+IDAEE Sbjct 636 FIVEDDEELGRKELKVRKGHVAKLMATEYQDIEGGFEDAEDYTWSSLLNEGLVEYIDAEE 695 Query 109 EEDIYVAVDEDDLE-------------------------EEHTHLEIDPQLIFGIGAGMI 143 EE I +A+ +DLE TH EI P +I G+ A +I Sbjct 696 EESILIAMQPEDLEPTAVEQDIPKENVDLAKRIKVTHHATTFTHCEIHPSMILGVAASII 755 Query 144 PYPEHNASPRITMGAGMVKQSLGLPAANYRIRPDTRQHLLHYPQLSMVKTQTTEQIGFDE 203 P+P+HN SPR T + M KQ++G+ NY R DT ++L+YPQ + T+ E + F E Sbjct 756 PFPDHNQSPRNTYQSAMGKQAMGVFLTNYNFRMDTMANILYYPQKPLGTTRAMEYLKFRE 815 Query 204 RPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGEERRYPGGQEDRFEI 263 PA QN +VA+ Y G+N ED+++MN++S++R L RS FFR+Y +E++Y + FE Sbjct 816 LPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEK 875 Query 264 PSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPPRFLEEPDDMGGLSP-QKR 322 P + Y LDEDGL+ P +V +++GKT+P + +++G + + Sbjct 876 PQRTNTLRMKHGTYDKLDEDGLIAPGVRVSGEDIIIGKTTP--IAPDEEELGQRTAYHSK 933 Query 323 RETSVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDERIPELGDKFASRHGQKGVIGHLA 382 R+ S +RS E+G+VD V + +DG K KV VR ++P++GDKFASRHGQKG IG Sbjct 934 RDASTPLRSTENGIVDQVLITTNQDGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITY 993 Query 383 PQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSMEGRRVDGTPFLGEDEED 442 +EDMPFT EG+VPDL++NPHA+PSRMTV H++E + K+ ++ G D +PF E Sbjct 994 RREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVEG 1053 Query 443 LRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVSNKLHARSRGPVQVL 502 + L + G+ S G E MY+G TG+K+ A+IF G +YQ+L HMV +K+HAR+RGP+QVL Sbjct 1054 ISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVL 1113 Query 503 TRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIHICGNCG-MTATEN 561 TRQP EGR+R+GGLR GEMERD I HGAA LKERL++ SD +HICG CG M+ Sbjct 1114 TRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLKERLMEASDAFRVHICGICGLMSVIAK 1173 Query 562 VEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGIAPRL 603 + + C C + DI++I + YA KLL E+ A+ I PRL Sbjct 1174 LNHNQFECKGCDNKIDIYQIHIPYAAKLLFQELMAMNITPRL 1215 >RecName: Full=DNA-directed RNA polymerase III subunit RPC2; Short=RNA polymerase III subunit 2; Short=RNA polymerase III subunit C2; AltName: Full=C128; AltName: Full=DNA-directed RNA polymerase III 130 kDa polypeptide; AltName: Full=RPC130 [Schizosaccharomyces pombe 972h-] Sequence ID: Q10233.1 Length: 1165 Range 1: 568 to 1161 Score:513 bits(1320), Expect:3e-168, Method:Compositional matrix adjust., Identities:258/602(43%), Positives:367/602(60%), Gaps:12/602(1%) Query 10 VYVNGSLVGTHPDPHELAEQIREARRIGDVSEMVNVSVKERTREVIINADAGRARRPLLV 69 VY+NG+++G P R+ RR G +S + + + R V I+ D GR RPL++ Sbjct 568 VYLNGAILGISRYPSLFVASFRKLRRSGKISPFIGIFINTHQRAVFISTDGGRICRPLII 627 Query 70 VEDGEPRISEAEIEALRDGDLEFDDLVAHGYVEFIDAEEEEDIYVAVDEDDLEEEHTHLE 129 V++G P++ I L++G F+D + G VE++D EE D ++V E D+ + THLE Sbjct 628 VQNGLPKVESKHIRLLKEGKWGFEDFLKQGLVEYVDVNEENDSLISVYERDITPDTTHLE 687 Query 130 IDPQLIFGIGAGMIPYPEHNASPRITMGAGMVKQSLGLPAANYRIRPDTRQHLLHYPQLS 189 I+P I G AG+IPYP HN SPR T M KQ++G A N R DT +L+ YPQ Sbjct 688 IEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLQRIDTLLYLMVYPQQP 747 Query 190 MVKTQTTEQIGFDERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGE 249 MVKT+T E IG+D+ PA QN VA+MSY G++IEDALV+NK+S++R R F + Sbjct 748 MVKTKTIELIGYDKLPAGQNATVAIMSYSGYDIEDALVLNKSSIDRGFGRCQVFHKHSVI 807 Query 250 ERRYPGGQEDRFEIPSQDVRGARGEEAYAH--LDEDGLVNPETQVDENSVLLGKTSPPRF 307 R+YP G DR P +D GE + H +++DGL +V + + K +P Sbjct 808 VRKYPNGTHDRIGDPQRDPE--TGEVVWKHGVVEDDGLAGVGCRVQPGQIYVNKQTPTNA 865 Query 308 LEEPDDMGGLSPQKR--RETSVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDERIPELG 365 L+ +G + + T +T ++ E G +D V L + L KV +R R PELG Sbjct 866 LDNSITLGHTQTVESGYKATPMTYKAPEPGYIDKVMLTTTDSDQTLIKVLMRQTRRPELG 925 Query 366 DKFASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSM 425 DKF+SRHGQKGV G + QEDMPF ++G+ PD+++NPH PSRMTVG ++E++ GK+G + Sbjct 926 DKFSSRHGQKGVCGVIVQQEDMPFNDQGICPDIIMNPHGFPSRMTVGKMIELLSGKVGVL 985 Query 426 EGRRVDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYH 485 G GT F G ED L + G+N +GK+ + SG+TGE +EA IF+G I+YQKL H Sbjct 986 RGTLEYGTCFGGTKVEDASRILVEHGYNYSGKDMLTSGITGETLEAYIFMGPIYYQKLKH 1045 Query 486 MVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDR 545 MV +K+HAR+RGP VLTRQPTEGR+R+GGLR+GEMERD I +GA+ L ERL+ SD Sbjct 1046 MVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMISSDA 1105 Query 546 EFIHICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGIAPRLEL 605 + +CG CG+ + +C +C ++ ++ + YA KLL E+ ++ I PRL L Sbjct 1106 CDVDVCGQCGLLGYKG------WCNSCQSTREVVKMTIPYAAKLLFQELLSMNIVPRLAL 1159 Query 606 ED 607 ED Sbjct 1160 ED 1161 >RecName: Full=DNA-directed RNA polymerase III subunit RPC2; Short=RNA polymerase III subunit C2; AltName: Full=C128; AltName: Full=DNA-directed RNA polymerase III 130 kDa polypeptide [Saccharomyces cerevisiae S288C] Sequence ID: P22276.2 Length: 1149 Range 1: 555 to 1145 Score:511 bits(1317), Expect:6e-168, Method:Compositional matrix adjust., Identities:267/605(44%), Positives:361/605(59%), Gaps:21/605(3%) Query 10 VYVNGSLVGTHPDPHELAEQIREARRIGDVSEMVNVSVKERTREVIINADAGRARRPLLV 69 VY+NG+L+G+ P + Q R RR G VSE +++ V I D GR RPL++ Sbjct 555 VYLNGTLIGSIRFPTKFVTQFRHLRRTGKVSEFISIYSNSHQMAVHIATDGGRICRPLII 614 Query 70 VEDGEPRISEAEIEALRDGDLEFDDLVAHGYVEFIDAEEEEDIYVAVDEDDLEEEHTHLE 129 V DG+ R+ + + L DG+L+FDD + G VE++D EE D Y+A+ E D+ THLE Sbjct 615 VSDGQSRVKDIHLRKLLDGELDFDDFLKLGLVEYLDVNEENDSYIALYEKDIVPSMTHLE 674 Query 130 IDPQLIFGIGAGMIPYPEHNASPRITMGAGMVKQSLGLPAANYRIRPDTRQHLLHYPQLS 189 I+P I G AG+IPYP HN SPR T M KQ++G A N R DT +L+ YPQ Sbjct 675 IEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMTYPQQP 734 Query 190 MVKTQTTEQIGFDERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGE 249 MVKT+T E I +D+ PA QN VAVMSY G++IEDALV+NK+S++R R E Sbjct 735 MVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRC--------E 786 Query 250 ERRYPGGQEDRFEIPSQDVRGA-----RGEEAYAH--LDEDGLVNPETQVDENSVLLGKT 302 RR R+ +QD+ G G+ + H L DGL +V + + K+ Sbjct 787 TRRKTTTVLKRYANHTQDIIGGMRVDENGDPIWQHQSLGPDGLGEVGMKVQSGQIYINKS 846 Query 303 SPPRFLEEPDDMGGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDERIP 362 P + P+ + RE V R E +D V + ++ L KV +R R P Sbjct 847 VPTNSADAPNPNNVNVQTQYREAPVIYRGPEPSHIDQVMMSVSDNDQALIKVLLRQNRRP 906 Query 363 ELGDKFASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKL 422 ELGDKF+SRHGQKGV G + QEDMPF ++G+VPD+++NPH PSRMTVG ++E+I GK Sbjct 907 ELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGIVPDIIMNPHGFPSRMTVGKMIELISGKA 966 Query 423 GSMEGRRVDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQK 482 G + G GT F G ED+ L D GFN +GK+ +YSG+TGE ++A IF G I+YQK Sbjct 967 GVLNGTLEYGTCFGGSKLEDMSKILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQK 1026 Query 483 LYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDE 542 L HMV +K+HAR+RGP VLTRQPTEGR+R+GGLR+GEMERD I +GA+ L ERL+ Sbjct 1027 LKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMIS 1086 Query 543 SDREFIHICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGIAPR 602 SD + +C CG+ +C C +I ++ + YA KLL E+ ++ IAPR Sbjct 1087 SDAFEVDVCDKCGLMGYSG------WCTTCKSAENIIKMTIPYAAKLLFQELLSMNIAPR 1140 Query 603 LELED 607 L LED Sbjct 1141 LRLED 1145 >RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA polymerase II subunit 2; Short=RNA polymerase II subunit B2 [Caenorhabditis elegans] Sequence ID: Q10578.2 Length: 1193 Range 1: 571 to 1177 Score:512 bits(1319), Expect:8e-168, Method:Compositional matrix adjust., Identities:259/610(42%), Positives:384/610(62%), Gaps:17/610(2%) Query 8 AKVYVNGSLVGTHPDPHELAEQIREARRIGD--VSEMVNVSVKERTREVIINADAGRARR 65 K++VNG+ VG H +P +L +++ RR D VSE V++ R RE+ I DAGR R Sbjct 571 TKIFVNGAWVGIHREPDQLMTTLKKLRRQMDIIVSE-VSMVRDIRDREIRIYTDAGRVCR 629 Query 66 PLLVVEDGEPRISEAEIEALRDGDLE-----FDDLVAHGYVEFIDAEEEEDIYVAVDEDD 120 PLL+VE+ + + + I+ L++ E + DLV G VE ID+ EEE +A+ +D Sbjct 630 PLLIVENQKLALKKRHIDQLKEAADEANKYTWSDLVGGGVVELIDSMEEETSMIAMMPED 689 Query 121 LE-----EEHTHLEIDPQLIFGIGAGMIPYPEHNASPRITMGAGMVKQSLGLPAANYRIR 175 L + HTH EI P +I G+ A +IP+P+HN SPR T + M KQ++G+ N+ +R Sbjct 690 LRSGGYCDTHTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYTTNFHVR 749 Query 176 PDTRQHLLHYPQLSMVKTQTTEQIGFDERPAAQNFVVAVMSYEGFNIEDALVMNKASVER 235 DT H+L+YPQ +V T++ E + F+E PA N +VA++SY G+N ED+++MN ++++R Sbjct 750 MDTLAHVLYYPQKPLVTTRSMEYLRFNELPAGINAIVAILSYSGYNQEDSVIMNNSAIDR 809 Query 236 ALARSHFFRTYEGEERRYPGGQEDRFEIPSQDVRGARGEEAYAHLDEDGLVNPETQVDEN 295 L RS F+R+Y E E+ E P+++ Y LDEDG+++P +V + Sbjct 810 GLFRSVFYRSYRDNEANLDNANEELIEKPTREKCSGMRHSLYDKLDEDGIISPGMRVSGD 869 Query 296 SVLLGKT-SPPRFLEEPDDMGGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLSKV 354 V++GKT + P ++ D G P +R+ S +RS E+G+VD V L DG+K K+ Sbjct 870 DVIIGKTVALPDIDDDLDASGKKYP--KRDASTFLRSSETGIVDQVMLSLNSDGNKFVKI 927 Query 355 SVRDERIPELGDKFASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHI 414 +R R+P++GDKFASRHGQKG +G + QEDMPFT EG+ PD+++NPHA+PSRMT+GH+ Sbjct 928 RMRSVRLPQIGDKFASRHGQKGTMGIMYRQEDMPFTAEGLTPDIIINPHAVPSRMTIGHL 987 Query 415 LEMIGGKLGSMEGRRVDGTPFLGEDEEDLRSGL-EDVGFNSAGKETMYSGVTGEKIEAEI 473 +E + GKL + +G D TPF SGL + G++ G E MY+G TG+K+ +I Sbjct 988 IECLQGKLSANKGEIGDATPFNDTVNVQKISGLLCEYGYHLRGNEVMYNGHTGKKLTTQI 1047 Query 474 FVGVIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAM 533 F G +YQ+L HMV +K+H+R+RGP+Q++ RQP EGRAR+GGLR GEMERD I HGA Sbjct 1048 FFGPTYYQRLKHMVDDKIHSRARGPIQMMNRQPMEGRARDGGLRFGEMERDCQISHGATQ 1107 Query 534 TLKERLLDESDREFIHICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDE 593 L+ERL + SD +++C NCG+ N+ C C +T + + + YA KLL E Sbjct 1108 FLRERLFEVSDPYHVYVCNNCGLIVVANLRTNSFECKACRNKTQVSAVRIPYACKLLFQE 1167 Query 594 MKALGIAPRL 603 + ++ IAPRL Sbjct 1168 LMSMSIAPRL 1177 >RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA polymerase II subunit 2; Short=RNA polymerase II subunit B2 [Eremothecium gossypii ATCC 10895] Sequence ID: Q753Q4.1 Length: 1222 Range 1: 573 to 1214 Score:510 bits(1313), Expect:1e-166, Method:Compositional matrix adjust., Identities:264/644(41%), Positives:384/644(59%), Gaps:50/644(7%) Query 8 AKVYVNGSLVGTHPDPHELAEQIREARRIGDVSEMVNVSVKERTREVIINADAGRARRPL 67 +V+VNG G H +P L + IR+ RR GD++ V++ R +E+ I DAGR RPL Sbjct 573 TRVFVNGVWHGIHRNPARLVDTIRKLRRKGDITAEVSIVRDIREKELKIFTDAGRVYRPL 632 Query 68 LVVEDGEP-------RISEAEIEAL--------------RDGDLEFDDLVAHGYVEFIDA 106 VV D + ++ + I L D + + L+ G VE+IDA Sbjct 633 FVVADTQHADGHKDLKVRKGHIRKLMLTEYQDIEGGFEDEDINYTWTSLLNDGIVEYIDA 692 Query 107 EEEEDIYVAVDEDDLE-------------------------EEHTHLEIDPQLIFGIGAG 141 EEEE I +A+ ++DL+ TH EI P +I G+ A Sbjct 693 EEEETILIAMQQEDLDPSVPQTVDPSDELDPARRIKAIHHSNTFTHCEIHPSMILGVAAS 752 Query 142 MIPYPEHNASPRITMGAGMVKQSLGLPAANYRIRPDTRQHLLHYPQLSMVKTQTTEQIGF 201 +IP+P+HN SPR T + M KQ++G+ NY +R DT ++L+YPQ + T+ E + F Sbjct 753 VIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKF 812 Query 202 DERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGEERRYPGGQEDRF 261 E PA QN +VA+ Y G+N ED+++MN++S++ L RS FFR+Y +E+R + F Sbjct 813 RELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDSGLFRSLFFRSYMDQEKRIGMSITESF 872 Query 262 EIPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPPRFLEEPDDMGGLSP-Q 320 E P + Y LD+DGL+ P +V + +++GKT+P + +++G + Sbjct 873 EKPHRTNTLRMKHGTYEKLDDDGLIAPGVRVSGDDIIIGKTTP--IPPDAEELGQRTAFH 930 Query 321 KRRETSVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDERIPELGDKFASRHGQKGVIGH 380 +R+ S +RS E+G+VD V + ++G K KV VR ++P++GDKFASRHGQKG IG Sbjct 931 SKRDASTPLRSTENGIVDQVLITTNQEGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGI 990 Query 381 LAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSMEGRRVDGTPFLGEDE 440 +EDMPFT EGVVPDL++NPHA+PSRMTV H++E + K+ ++ G D +PF Sbjct 991 TYRREDMPFTAEGVVPDLIINPHAIPSRMTVAHLIECLLSKVAALSGNEGDASPFTDITV 1050 Query 441 EDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVSNKLHARSRGPVQ 500 + + L + G+ S G E MY+G TG+K+ A+IF G +YQ+L HMV +K+HAR+RGP+Q Sbjct 1051 DGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQ 1110 Query 501 VLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIHICGNCG-MTAT 559 VLTRQP EGR+R+GGLR GEMERD I HGAA LKERL++ SD +HICG CG MT Sbjct 1111 VLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLKERLMEASDAFRVHICGICGLMTVV 1170 Query 560 ENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGIAPRL 603 ++ + C C + DI+++ + YA KLL E+ A+ IAPRL Sbjct 1171 AKLKHNQFECRGCKNKIDIYQVHIPYAAKLLFQELMAMNIAPRL 1214 >RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA polymerase II subunit 2; Short=RNA polymerase II subunit B2; AltName: Full=DNA-directed RNA polymerase II 138 kDa polypeptide [Schizosaccharomyces pombe 972h-] Sequence ID: Q02061.2 Length: 1210 Range 1: 558 to 1204 Score:497 bits(1279), Expect:1e-161, Method:Compositional matrix adjust., Identities:262/649(40%), Positives:379/649(58%), Gaps:49/649(7%) Query 2 SSQQREAKVYVNGSLVGTHPDPHELAEQIREARRIGDVSEMVNVSVKERTREVIINADAG 61 S+ KV+VNG +G H DP L E +R RR D+S V++ R +E+ + DAG Sbjct 558 SASPNATKVFVNGVWLGVHRDPAHLTETLRSLRRRLDISAEVSIVRDIREKELRLFTDAG 617 Query 62 RARRPLLVVED-------GEPRISEAEIEALRDGDLEFD----------DLVAHGYVEFI 104 R RPL +V++ GE I + I+ L + +D LV+ G +E++ Sbjct 618 RICRPLFIVDNNPNSERRGELCIRKEHIQQLIEDKDRYDIDPEQRFGWTALVSSGLIEYL 677 Query 105 DAEEEEDIYVAVDEDDLEEE-----------------------------HTHLEIDPQLI 135 DAEEEE + +A+ +DLE TH EI P +I Sbjct 678 DAEEEETVMIAMSPEDLEASRQMQAGYEVKEELDPAQRVKPAPNPHVHAWTHCEIHPAMI 737 Query 136 FGIGAGMIPYPEHNASPRITMGAGMVKQSLGLPAANYRIRPDTRQHLLHYPQLSMVKTQT 195 GI A +IP+P+HN SPR T + M KQ++G+ NY++R DT ++L+YPQ + T++ Sbjct 738 LGILASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNYQVRMDTMANILYYPQKPLATTRS 797 Query 196 TEQIGFDERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGEERRYPG 255 E + F E PA QN +VA++ Y G+N ED+++MN+AS++R L RS F+RTY +E++ Sbjct 798 MEYLKFRELPAGQNAIVAILCYSGYNQEDSIIMNQASIDRGLFRSIFYRTYTDQEKKIGM 857 Query 256 GQEDRFEIPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSP-PRFLEEPDDM 314 + FE P + Y L++DGL+ P T+V +++GKT+P P EE Sbjct 858 TVMEEFERPVRSTTLRMKHGTYDKLEDDGLIAPGTRVSGEDIIIGKTAPIPLDHEELGQR 917 Query 315 GGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDERIPELGDKFASRHGQ 374 L +R+ S +RS ESG+VD V + ++G K KV +R RIP++GDKFASRHGQ Sbjct 918 TQL--HAKRDVSTPLRSTESGIVDQVMVTTNQEGLKFVKVRMRSTRIPQIGDKFASRHGQ 975 Query 375 KGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSMEGRRVDGTP 434 KG IG EDMPF+ +G+VPD+++NPHA+PSRMTV H++E K+ ++ G D TP Sbjct 976 KGTIGMTYRHEDMPFSAQGIVPDIIINPHAIPSRMTVAHLVECQLSKVSALSGFEGDATP 1035 Query 435 FLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVSNKLHAR 494 F E + L GF S G E MY G TG K+ A++F+G +YQ+L H+V +K+HAR Sbjct 1036 FTDVTVEAVSKLLRSHGFQSRGFEVMYHGHTGRKLVAQVFLGPTYYQRLKHLVDDKIHAR 1095 Query 495 SRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIHICGNC 554 +RGPVQ+LTRQP EGR+R+GGLR GEMERD I HG + L+ERL D SD + +C C Sbjct 1096 ARGPVQILTRQPVEGRSRDGGLRFGEMERDCQISHGCSSVLRERLFDCSDAYRVIVCDIC 1155 Query 555 GMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGIAPRL 603 G+ A + ++ C +C T ++ + YA KLL E+ ++ IAPRL Sbjct 1156 GLIAIASYKKDSYECRSCQNRTRFSQVYLPYAAKLLFQELMSMNIAPRL 1204 >RecName: Full=DNA-directed RNA polymerase III subunit RPC2; Short=RNA polymerase III subunit C2; AltName: Full=C128; AltName: Full=DNA-directed RNA polymerase III 127.6 kDa polypeptide; AltName: Full=DNA-directed RNA polymerase III subunit B [Mus musculus] Sequence ID: P59470.2 Length: 1133 Range 1: 539 to 1128 Score:492 bits(1266), Expect:1e-160, Method:Compositional matrix adjust., Identities:249/598(42%), Positives:363/598(60%), Gaps:10/598(1%) Query 10 VYVNGSLVGTHPDPHELAEQIREARRIGDVSEMVNVSVKERTREVIINADAGRARRPLLV 69 V++NG+++G D +L R RR G ++E V++S R V I++D GR RP ++ Sbjct 539 VFLNGNILGVIRDHKKLVSTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYII 598 Query 70 VEDGEPRISEAEIEALRDGDLEFDDLVAHGYVEFIDAEEEEDIYVAVDEDDLEEEHTHLE 129 V+ +P ++ +E L G F+D + VE++D EE D +A+ E + ++ THLE Sbjct 599 VKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLE 658 Query 130 IDPQLIFGIGAGMIPYPEHNASPRITMGAGMVKQSLGLPAANYRIRPDTRQHLLHYPQLS 189 I+P + G+ AG+IPYP HN SPR T M KQ++G N R R DT +LL YPQ Sbjct 659 IEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKP 718 Query 190 MVKTQTTEQIGFDERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGE 249 MVKT+T E I F++ PA QN VAVMSY G++IEDALV+NKAS++R R ++ + Sbjct 719 MVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCT 778 Query 250 ERRYPGGQEDRFEIPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPPRFLE 309 +RY D+ P D + + LD DG+ +P +V+ VL+ K S P + Sbjct 779 LKRYTNQTFDKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNK-SMPTVTQ 837 Query 310 EPDDMGGLSPQK--RRETSVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDERIPELGDK 367 P + G PQ+ ++ +T + ++ V + + + L K+ +R R PE+GDK Sbjct 838 IPLE-GSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDK 896 Query 368 FASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSMEG 427 F+SRHGQKGV G + PQEDMPF + G+ PD+++NPH PSRMTVG ++E++ GK G ++G Sbjct 897 FSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDG 956 Query 428 RRVDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMV 487 R GT F G +D+ L G+N GK+ + SG+TGE +EA I+ G ++YQKL HMV Sbjct 957 RFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMV 1016 Query 488 SNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREF 547 +K+HAR+RGP VLTRQPTEGR+R+GGLR+GEMERD IG+GA+M L ERL+ SD Sbjct 1017 LDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFE 1076 Query 548 IHICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGIAPRLEL 605 + +CG CG+ +C C + + + YA KLL E++++ I PRL+L Sbjct 1077 VDVCGQCGLLGYSG------WCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKL 1128 >RecName: Full=DNA-directed RNA polymerase III subunit RPC2; Short=RNA polymerase III subunit C2; AltName: Full=C128; AltName: Full=DNA-directed RNA polymerase III 127.6 kDa polypeptide; AltName: Full=DNA-directed RNA polymerase III subunit B [Homo sapiens] Sequence ID: Q9NW08.2 Length: 1133 Range 1: 539 to 1128 Score:491 bits(1265), Expect:2e-160, Method:Compositional matrix adjust., Identities:249/598(42%), Positives:363/598(60%), Gaps:10/598(1%) Query 10 VYVNGSLVGTHPDPHELAEQIREARRIGDVSEMVNVSVKERTREVIINADAGRARRPLLV 69 V++NG+++G D +L R RR G ++E V++S R V I++D GR RP ++ Sbjct 539 VFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYII 598 Query 70 VEDGEPRISEAEIEALRDGDLEFDDLVAHGYVEFIDAEEEEDIYVAVDEDDLEEEHTHLE 129 V+ +P ++ +E L G F+D + VE++D EE D +A+ E + ++ THLE Sbjct 599 VKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLE 658 Query 130 IDPQLIFGIGAGMIPYPEHNASPRITMGAGMVKQSLGLPAANYRIRPDTRQHLLHYPQLS 189 I+P + G+ AG+IPYP HN SPR T M KQ++G N R R DT +LL YPQ Sbjct 659 IEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKP 718 Query 190 MVKTQTTEQIGFDERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGE 249 MVKT+T E I F++ PA QN VAVMSY G++IEDALV+NKAS++R R ++ + Sbjct 719 MVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCT 778 Query 250 ERRYPGGQEDRFEIPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPPRFLE 309 +RY D+ P D + + LD DG+ +P +V+ VL+ K S P + Sbjct 779 LKRYTNQTFDKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNK-SMPTVTQ 837 Query 310 EPDDMGGLSPQK--RRETSVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDERIPELGDK 367 P + G PQ+ ++ +T + ++ V + + + L K+ +R R PE+GDK Sbjct 838 IPLE-GSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDK 896 Query 368 FASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSMEG 427 F+SRHGQKGV G + PQEDMPF + G+ PD+++NPH PSRMTVG ++E++ GK G ++G Sbjct 897 FSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDG 956 Query 428 RRVDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMV 487 R GT F G +D+ L G+N GK+ + SG+TGE +EA I+ G ++YQKL HMV Sbjct 957 RFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMV 1016 Query 488 SNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREF 547 +K+HAR+RGP VLTRQPTEGR+R+GGLR+GEMERD IG+GA+M L ERL+ SD Sbjct 1017 LDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFE 1076 Query 548 IHICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGIAPRLEL 605 + +CG CG+ +C C + + + YA KLL E++++ I PRL+L Sbjct 1077 VDVCGQCGLLGYSG------WCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKL 1128 >RecName: Full=DNA-directed RNA polymerase III subunit RPC2; Short=RNA polymerase III subunit C2; AltName: Full=DNA-directed RNA polymerase III 128 kDa polypeptide; Short=C128; AltName: Full=DNA-directed RNA polymerase III subunit B [Drosophila melanogaster] Sequence ID: P25167.2 Length: 1137 Range 1: 546 to 1136 Score:491 bits(1263), Expect:4e-160, Method:Compositional matrix adjust., Identities:245/599(41%), Positives:359/599(59%), Gaps:9/599(1%) Query 10 VYVNGSLVGTHPDPHELAEQIREARRIGDVSEMVNVSVKERTREVIINADAGRARRPLLV 69 V++NG+++G + L +R RR G + V+V R + I+ D GR RP ++ Sbjct 546 VFINGNVLGLTLNHKHLVRNLRYMRRKGRMGSYVSVHTSYTQRCIYIHTDGGRLCRPYVI 605 Query 70 VEDGEPRISEAEIEALRDGDLEFDDLVAHGYVEFIDAEEEEDIYVAVDEDDLEEEHTHLE 129 VE+ P + + ++ L G +FDD + G +E++D EE D ++A +ED +E+ THLE Sbjct 606 VENRRPLVKQHHLDELNRGIRKFDDFLLDGLIEYLDVNEENDSFIAWNEDQIEDRTTHLE 665 Query 130 IDPQLIFGIGAGMIPYPEHNASPRITMGAGMVKQSLGLPAANYRIRPDTRQHLLHYPQLS 189 I+P + G+ AG++PYP HN SPR T M KQ++G+ N + R D+ + L YP Sbjct 666 IEPFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPHAP 725 Query 190 MVKTQTTEQIGFDERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGE 249 MVK++T E FD+ PA QN VAVMSY G++IEDAL++NKAS++R R ++ + Sbjct 726 MVKSKTIELTNFDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCT 785 Query 250 ERRYPGGQEDRFEIPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPPRFLE 309 +RY DR P +D + + LD DG+V P QV +++ K P Sbjct 786 VKRYANQTFDRIMGPMKDALTNKVIFKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSM 845 Query 310 EPDDMGGLSPQ-KRRETSVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDERIPELGDKF 368 P + G S Q ++ + E ++ V + + L K+ +R RIPE+GDKF Sbjct 846 NP--LQGQSAQVPYTAVPISYKGPEPSYIERVMVSANAEEDFLIKILLRQTRIPEIGDKF 903 Query 369 ASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSMEGR 428 +SRHGQKGV G + QEDMPF + G+ PD+++NPH PSRMTVG LE++GGK G +EG+ Sbjct 904 SSRHGQKGVTGLIVEQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLELLGGKAGLLEGK 963 Query 429 RVDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVS 488 GT F G ED+++ LE GFN GK+ YSG+TG +EA I+ G ++YQKL HMV Sbjct 964 FHYGTAFGGSKVEDIQAELERHGFNYVGKDFFYSGITGTPLEAYIYSGPVYYQKLKHMVQ 1023 Query 489 NKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFI 548 +K+HAR+RGP VLTRQPT+GR+REGGLR+GEMERD I +GA+M + ERL+ SD + Sbjct 1024 DKMHARARGPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFEV 1083 Query 549 HICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGIAPRLELED 607 +C CG A + +C C ++ +I M YA KLL E+ ++ + P++ LE+ Sbjct 1084 DVCRTCGRMAYCS------WCHFCQSSANVSKISMPYACKLLFQELTSMNVVPKMILEN 1136 >RecName: Full=DNA-directed RNA polymerase III subunit rpc2; Short=RNA polymerase III subunit C2; AltName: Full=DNA-directed RNA polymerase III subunit B; Contains: RecName: Full=Ddi rpc2 intein [Dictyostelium discoideum] Sequence ID: Q54IZ9.1 Length: 1608 Range 1: 1019 to 1608 Score:488 bits(1255), Expect:6e-155, Method:Compositional matrix adjust., Identities:246/600(41%), Positives:354/600(59%), Gaps:11/600(1%) Query 10 VYVNGSLVGTHPDPHELAEQIREARRIGDVSEMVNVSVKERTREVIINADAGRARRPLLV 69 V +NG ++G H P +R+ RR G + E V++ + + + + D GR RP+++ Sbjct 1019 VLLNGQIIGIHNSPDYFVTTLRKMRRAGRIREFVSICKNKAQQTISVACDGGRLCRPVII 1078 Query 70 VEDGEPRISEAEIEALRDGDLEFDDLVAHGYVEFIDAEEEEDIYVAVDEDDLEEEHTHLE 129 V+D PR+++ IE L+DG FDD + G +E++D EE D ++A E ++ THLE Sbjct 1079 VDDQRPRLTQEHIEDLKDGLRTFDDFIREGIIEYLDVNEENDSFLAWREAAIQPWTTHLE 1138 Query 130 IDPQLIFGIGAGMIPYPEHNASPRITMGAGMVKQSLGLPAANYRIRPDTRQHLLHYPQLS 189 I+P + G AG+IPYP HN SPR T M KQ++G A N R DT +LL + Q Sbjct 1139 IEPFTMLGCVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLTRIDTLLYLLVHTQRP 1198 Query 190 MVKTQTTEQIGFDERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGE 249 + +T+T + + + + PA N VAVMSY G++IEDALVMNKAS++R R + Sbjct 1199 LCQTRTIDLLNWYKLPAGHNATVAVMSYSGYDIEDALVMNKASLDRGFGRCIVLKKQVTS 1258 Query 250 ERRYPGGQEDRFEIPS-QDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPPRFL 308 +++ DR P+ D+R + Y LD DG+ P + +L+ K SP + Sbjct 1259 IKKHGNDTSDRIFPPTPNDLR----QPKYGLLDSDGIAKPGELAQKGQILVNKYSPLNTI 1314 Query 309 EEPDDMGGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDERIPELGDKF 368 + + + + + + + +D V L G+D L K+ +R R PELGDKF Sbjct 1315 DATPNPELIPDSAYKSSYMGYKYDNPAFIDKVLLTSGDDEQLLIKMLMRSTRRPELGDKF 1374 Query 369 ASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSMEGR 428 +SRHGQKGV G + QEDMPF++ G+ PD+++NPH PSRMT+G ++E++ GK G + G+ Sbjct 1375 SSRHGQKGVCGIIVKQEDMPFSDLGICPDIIMNPHGFPSRMTIGKMIELLAGKAGVLSGK 1434 Query 429 RVDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVS 488 GT F G+ E++ L GF+ GK+ + SGVTGE + IF G IFYQKL HMV Sbjct 1435 FGFGTCFGGDRVENISKVLISKGFSYGGKDYVTSGVTGEPLACFIFFGPIFYQKLKHMVM 1494 Query 489 NKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFI 548 +K+HAR+RGP LTRQPTEGRAR GGLR+GEMERD IG+GA+ + ERL+ SDR + Sbjct 1495 DKMHARARGPTVTLTRQPTEGRARGGGLRLGEMERDCLIGYGASALIMERLMISSDRFTV 1554 Query 549 HICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGIAPRLELEDA 608 + C NCG E YC C DI I++ YA KLL E++A+ I PRL+L D+ Sbjct 1555 YACKNCGFLGYEG------YCQYCKSSVDISTIQIPYACKLLFQELQAMNIVPRLKLVDS 1608 >RecName: Full=DNA-directed RNA polymerase III subunit 2; AltName: Full=DNA-directed RNA polymerase III subunit RPC2; Short=DNA polymerase I subunit C2; AltName: Full=Nuclear RNA polymerase C2 [Arabidopsis thaliana] Sequence ID: F4KD38.1 Length: 1161 Range 1: 550 to 1161 Score:467 bits(1202), Expect:8e-151, Method:Compositional matrix adjust., Identities:246/617(40%), Positives:359/617(58%), Gaps:23/617(3%) Query 10 VYVNGSLVGTHPDPHELAEQIREARRIGDVSEMVNVSVKERTREVIINADAGRARRPLLV 69 V +NG ++G H P A +R RR G + E V+V E+ V + +D GR RPL++ Sbjct 550 VILNGLILGKHSRPQYFANSLRRLRRAGKIGEFVSVFTNEKQHCVYVASDVGRVCRPLVI 609 Query 70 VEDGEPRISEAEIEALRDGDLEFDDLVAHGYVEFIDAEEEEDIYVAVDEDD----LEE-- 123 + G R+ + ++ L+DG FDD + G +E++D EE + +A+ E D L+E Sbjct 610 ADKGISRVKQHHMKELQDGVRTFDDFIRDGLIEYLDVNEENNALIALYESDGTTELDEGA 669 Query 124 -----EHTHLEIDPQLIFGIGAGMIPYPEHNASPRITMGAGMVKQSLGLPAANYRIRPDT 178 + TH+EI+P I G+ AG+IPYP HN SPR T M KQ++G A N R DT Sbjct 670 EAAKADTTHIEIEPFTILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNRMDT 729 Query 179 RQHLLHYPQLSMVKTQTTEQIGFDERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALA 238 +LL YPQ ++ T+T E +G+D+ A QN VAVMS+ G++IEDA+VMNK+S++R Sbjct 730 LLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSFSGYDIEDAIVMNKSSLDRGFG 789 Query 239 RSHFFRTYEGEERRYPGGQEDRFEIPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVL 298 R + ++Y DR IP R E LD+DGL P + N + Sbjct 790 RCIVMKKIVAMSQKYDNCTADRILIPQ---RTGPDAEKMQILDDDGLATPGEIIRPNDIY 846 Query 299 LGKTSPPRFLEEPDDMGGLSPQKRRETSVTMRS--GESGVVDTVTLMEGEDGSKLSKVSV 356 + K P + + LS + R + GE+ VVD V L + G K + Sbjct 847 INKQVPVDTVTK--FTSALSDSQYRPAREYFKGPEGETQVVDRVALCSDKKGQLCIKYII 904 Query 357 RDERIPELGDKFASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILE 416 R R PELGDKF+SRHGQKGV G + QED PF+E G+ PDL++NPH PSRMTVG ++E Sbjct 905 RHTRRPELGDKFSSRHGQKGVCGIIIQQEDFPFSELGICPDLIMNPHGFPSRMTVGKMIE 964 Query 417 MIGGKLGSMEGRRVDGTPF-----LGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEA 471 ++G K G GR G+ F + E + + L + GF+ +GK+ +YSG++GE +EA Sbjct 965 LLGSKAGVSCGRFHYGSAFGERSGHADKVETISATLVEKGFSYSGKDLLYSGISGEPVEA 1024 Query 472 EIFVGVIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGA 531 IF+G I+YQKL HMV +K+HAR GP ++TRQPTEG+++ GGLR+GEMERD I +GA Sbjct 1025 YIFMGPIYYQKLKHMVLDKMHARGSGPRVMMTRQPTEGKSKNGGLRVGEMERDCLIAYGA 1084 Query 532 AMTLKERLLDESDREFIHICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLL 591 +M + ERL+ SD + +C CG+ N + ++ C C +I +++ YA KLL Sbjct 1085 SMLIYERLMISSDPFEVQVCRACGLLGYYNYKLKKAVCTTCKNGDNIATMKLPYACKLLF 1144 Query 592 DEMKALGIAPRLELEDA 608 E++++ + PRL+L +A Sbjct 1145 QELQSMNVVPRLKLTEA 1161 >RecName: Full=DNA-directed RNA polymerase subunit 2 [Acanthamoeba polyphaga mimivirus] Sequence ID: Q7T6X7.2 Length: 1196 Range 1: 566 to 1191 Score:382 bits(982), Expect:1e-118, Method:Compositional matrix adjust., Identities:213/639(33%), Positives:346/639(54%), Gaps:50/639(7%) Query 8 AKVYVNGSLVGTHPDPHELAEQIREARRIGDVSEMVNVSVKERTREVIINADAGRARRPL 67 KV++NG+ +G + ++ +R R G++S MV + + +T E I D GR RP Sbjct 566 VKVFLNGNWLGVTRNIIKIHNDLRAMRFRGELSRMVGLVLNYKTAEFHIYTDGGRLIRPY 625 Query 68 LVVEDGEPRISEA---EIEALRDGDLEFDDLVAHGYVEFIDAEEEEDIYVAV-------- 116 L V D + E+ + + +F +++ E++D EEE++I +AV Sbjct 626 LTVTDNKLNFKPEMLDEVNSWEEFLAKFPEVI-----EYVDKEEEQNIMLAVFPQYIQDA 680 Query 117 -----------------------DEDDLEEEHTHLEIDPQLIFGIGAGMIPYPEHNASPR 153 +D++ +TH EI P +I G+ + IP+P+HN SPR Sbjct 681 NRIMSKKPINSRDQLNKINRTNRYDDNVYVRYTHCEIHPCMILGLISSNIPFPDHNQSPR 740 Query 154 ITMGAGMVKQSLGLPAANYRIRPDTRQHLLHYPQLSMVKTQTTEQIGFDERPAAQNFVVA 213 +Q++GL ++YR R D ++L++PQ+ +V ++ ++ G PA +N +VA Sbjct 741 GIFQYNQARQAMGLYISDYRERTDI-SYILYHPQIPLVTSRASKYTGTHIFPAGENSIVA 799 Query 214 VMSYEGF-NIEDALVMNKASVERALARSHFFRTYEGEERRYPGG-QEDRFEIPSQDVRGA 271 + SY G N ED+LV+N +++++ R+ + Y ++ P Q F P ++ Sbjct 800 IASYTGLMNQEDSLVINDSAIQKGYMRAQALKKYMEIIKKNPASSQTSIFMKPDRNKVDN 859 Query 272 RGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPPRFLEEPDDMGGLSPQKRRETSVTMRS 331 + Y L E+G ET + + V++G +P E + ++ ++ S +S Sbjct 860 LRDANYDKLSEEGYAKVETVIRDGDVVIGVVNPKPTAREDE-------KQYKDASSIYKS 912 Query 332 GESGVVDTVTLMEGEDGSKLSKVSVRDERIPELGDKFASRHGQKGVIGHLAPQEDMPFTE 391 G VD V DG + K+ +R ERIP +GDKF+SR GQKG IG+ A + DM F++ Sbjct 913 LIPGAVDKVITEVNNDGYPIIKMRIRSERIPNVGDKFSSRAGQKGTIGYKAHRADMLFSK 972 Query 392 EGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSMEGRRVDGTPFLGEDEEDLRSGLEDVG 451 G++PD+++NP+ +P RMT+G ++E + GKL +++G D TPF D + L G Sbjct 973 SGLIPDIIINPNCMPKRMTIGQLIECLLGKLCAVKGVYGDATPFTSVDLNAINDELVAAG 1032 Query 452 FNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRA 511 + G ETMY+G+ G+K+ +IF+G +YQ+L MV +K H+R+RGP Q+LTRQ EGR+ Sbjct 1033 YEEWGNETMYNGMNGKKLPVKIFIGPTYYQRLKQMVGDKAHSRARGPTQLLTRQAPEGRS 1092 Query 512 REGGLRIG-EMERDVFIGHGAAMTLKERLLDESDREFIHICGNCGMTATENVEQRRVYCP 570 R+GGLRIG EMERD HG A LKE+ +D SD H+C +CG A + E++ C Sbjct 1093 RDGGLRIGFEMERDALCAHGVAQFLKEKTVDNSDIYTCHVCDSCGQFAHKVPEKKYYTCT 1152 Query 571 NCGEETDIHEIEMSYAFKLLLDEMKALGIAPRLELEDAV 609 C T I +I + YAFKLLL E+ ++ I ++ + Sbjct 1153 GCRNTTSISKIVIPYAFKLLLQELASINILGKIRTSKTI 1191 >RecName: Full=Probable DNA-directed RNA polymerase II subunit RPB2 homolog [Invertebrate iridescent virus 3] Sequence ID: Q197F1.1 Length: 1140 Range 1: 596 to 1140 Score:332 bits(850), Expect:5e-100, Method:Compositional matrix adjust., Identities:201/574(35%), Positives:317/574(55%), Gaps:41/574(7%) Query 44 NVS-VKERTREVI-INADAGRARRPLLVVEDGEPRISEAEIEALRDGDLEFDDLVAHGYV 101 N+S V R VI I +DAGR RP+ ++ +I E E + F + + + Sbjct 596 NISIVVNRALGVIEIFSDAGRFIRPIFDLD----KICNFEGEIVP----SFKWFLDNQLI 647 Query 102 EFIDAEEEEDIYVAVDEDDLEEE----HTHLEIDPQLIFGIGAGMIPYPEHNASPRITMG 157 +ID E +A++ DL + +E+DP +FGI AG+IP+P+ S R Sbjct 648 RYIDINEAAANSIAIELRDLSTNPNTRYNLMELDPCGMFGIVAGIIPFPDRTQSARNCFY 707 Query 158 AGMVKQSLGL-PAANYRIRPDTRQHLLHYPQLSMVKTQTTEQIGFDERPAAQNFVVAVMS 216 + MVKQ++G P N ++ +T H L+YPQ +V T E +E P N +VA+ Sbjct 708 SSMVKQAIGFVPCHN--LKTETVSHTLNYPQKPLVTTSFAEYNQLNEYPNGINAIVAIAC 765 Query 217 YEGFNIEDALVMNKASVERALARSHFFRTYEGEERRYPGGQEDRFEIPSQDVRGARGEEA 276 Y G+N ED++++NK+S++R L + + T+ +E++ G E+R EIPS ++ + Sbjct 766 YTGYNQEDSIILNKSSIDRGLFGTITYNTFTAQEKK-NGIIEERIEIPSNAIKIR--DCN 822 Query 277 YAHLDEDGLVNPETQVDENSVLLGKTSPPRFLEEPDDMGGLSPQKRRETSVTMRSGESGV 336 Y + DG+V +V + VL+ K + ++ +K ++SV ++ GE G Sbjct 823 YGLVGPDGIVRLRQRVKKGDVLICKVTIKNKNQD---------EKLVDSSVIVQHGEEGY 873 Query 337 VDTVTLMEGEDGSKLSKVSVRDERIPELGDKFASRHGQKGVIGHLAPQEDMPFTEEGVVP 396 VD + + DG ++ KV + R PE+GDKF S QKG G + PQEDMPFT G+ P Sbjct 874 VDRI-VDNVIDGCRIVKVVIGQMRTPEIGDKFCSGMAQKGTCGMIFPQEDMPFTASGMTP 932 Query 397 DLVVNPHALPSRMTVGHILEMIGGKLGSMEG--RRVDGTPFLGEDE---EDLRSGLEDVG 451 D+++NP+ +PSRMT+ I+ + GKL ++ R +G F ++L L+ G Sbjct 933 DIIINPNCIPSRMTINQIISTVMGKLYTVNPNPRFRNGNSFQENSNTILKELCHHLKLNG 992 Query 452 FNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRA 511 F+ +G E MYSG TGE+I++ IF+G +Y +L HMV +K+HARS G V L RQP GR+ Sbjct 993 FDPSGSEVMYSGFTGERIQSTIFMGPTYYHRLKHMVKDKMHARSHGQVTTLHRQPNCGRS 1052 Query 512 REGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIHICGNCGMTATENVEQRRVYCPN 571 + GGLR GEME+D + HGA L ER+ SD I +C +CGM ++ + + C + Sbjct 1053 QGGGLRFGEMEKDCILVHGATQFLNERMFLNSDPFQIDVCKDCGMMSSTSKK-----CHH 1107 Query 572 CGEETDIHEIEMSYAFKLLLDEMKALGIAPRLEL 605 CG ++ + Y+ K LL E+ +GI +++L Sbjct 1108 CG-SINVKRCNIPYSCKNLLQELNGMGIKTKIDL 1140 >RecName: Full=DNA-directed RNA polymerase I subunit RPA2; Short=RNA polymerase I subunit 2 [Euplotes octocarinatus] Sequence ID: P28365.2 Length: 1166 Range 1: 630 to 1165 Score:331 bits(848), Expect:1e-99, Method:Compositional matrix adjust., Identities:185/552(34%), Positives:286/552(51%), Gaps:58/552(10%) Query 98 HGYVEFIDAEEEEDIYVAVDEDDLEEEHTHLEIDPQLIFGIGAGMIPYPEHNASPRITMG 157 + +E+I E+ ++ +A ++D+ E TH E+DP I I A + + E+N SPR Sbjct 630 YNCIEWISPLEQMNLSIACTDEDITPETTHQELDPINILSIVASVGVFAEYNQSPRNMYQ 689 Query 158 AGMVKQSLGLPAANYRIRPDTRQHLLHYPQLSMVKTQTTEQIGFDERPAAQNFVVAVMSY 217 M KQ++G P N++ R D + + L +P +VKT+T +E P+ N VVAV+SY Sbjct 690 CQMAKQTMGTPYHNHQFRTDNKIYRLLFPHRPIVKTRTQVDFDIEEYPSGTNAVVAVISY 749 Query 218 EGFNIEDALVMNKASVERALARSHFFRTYEGEERRYPGGQEDRFEIPSQDVRGARGEEAY 277 G+++EDA+++NK+S ER +++Y D E SQ RG + Y Sbjct 750 TGYDLEDAMIINKSSYERGFGHGVVYKSY----------THDLNESNSQSTRGIKSSVRY 799 Query 278 AHLDEDGLVNPETQVDENSVLLGKTSP-------PRFLEEPDDMGGLSPQKRRETSVTMR 330 L N +Q D++ + L P + + ++ KR + Sbjct 800 KFL------NNVSQKDKSKIKLENIDPDGLPKIGSQLTKGKPELCIFDTLKRGAKLSKFK 853 Query 331 SGESGVVDTVTLMEGEDGS--KLS-KVSVRDERIPELGDKFASRHGQKGVIGHLAPQEDM 387 E ++TV + +D + LS ++R RIP +GDKF+SRHGQKGV+ L PQ DM Sbjct 854 DSEKARIETVRVCGNDDKNPDNLSIGYTIRYSRIPVIGDKFSSRHGQKGVLSVLWPQVDM 913 Query 388 PFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSMEGRRVDGTPFLGEDEEDLRSG- 446 PFTE G+ PDL++NPHA PSRMT+G +++ + K GS+ G F D+ D+ Sbjct 914 PFTENGITPDLIINPHAFPSRMTMGMLIQSMAAKSGSLRGEFKTVETFQRYDDNDIVGHF 973 Query 447 ---LEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVSNKLHARSRGPVQVLT 503 L D GFN G E MYSG+ G ++A+IF+GV++YQ+L HMVS+K AR GP+ +LT Sbjct 974 GKELLDKGFNYHGNELMYSGIFGTPLKADIFIGVVYYQRLRHMVSDKSQARGTGPIDILT 1033 Query 504 RQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIHICGNCGMTATENVE 563 QP +GR + GG+R GEMERD + HGAA L +RL SD +C NCG + V Sbjct 1034 HQPVKGRKKGGGIRFGEMERDSLLAHGAAYCLNDRLFRSSDYSEGFVCQNCGSILSCYVN 1093 Query 564 Q----------------------------RRVYCPNCGEETDIHEIEMSYAFKLLLDEMK 595 + +V C C + ++ ++ + + + L +E+ Sbjct 1094 RAIMKTQTFIPPSLDESNKDTEDKEIHMNEKVICKVCKKNSNCKKVALPFVLRFLANELA 1153 Query 596 ALGIAPRLELED 607 ++GI + + D Sbjct 1154 SMGIKLKFTVND 1165 >RecName: Full=DNA-directed RNA polymerase I subunit RPA2; Short=RNA polymerase I subunit 2; AltName: Full=DNA-directed RNA polymerase I 135 kDa polypeptide; Short=RPA135 [Homo sapiens] Sequence ID: Q9H9Y6.2 Length: 1135 Range 1: 626 to 1134 Score:318 bits(814), Expect:7e-95, Method:Compositional matrix adjust., Identities:184/533(35%), Positives:279/533(52%), Gaps:47/533(8%) Query 96 VAHGYVEFIDAEEEEDIYVAVDEDDLEE-EHTHLEIDPQLIFGIGAGMIPYPEHNASPRI 154 +A G E I E+ + VA+ ED++ TH E+ P + + A IP+ +HN SPR Sbjct 626 LALGKEELIGTMEQIFMNVAIFEDEVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRN 685 Query 155 TMGAGMVKQSLGLPAANYRIRPDTRQHLLHYPQLSMVKTQTTEQIGFDERPAAQNFVVAV 214 M KQ++G P Y+ R D + + L PQ +V+ + D P N +VAV Sbjct 686 MYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAV 745 Query 215 MSYEGFNIEDALVMNKASVERALARSHFFRT--YEGEERRYPGGQEDRFEIPSQDVRGAR 272 +SY G+++EDA+++NKAS ER A +++ + E+ G F I D R Sbjct 746 ISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPR--- 802 Query 273 GEEAYAHLDEDGL--VNPETQV-DENSVLLGKTSPPRFLEEPDDMGGLSPQKRRETSVTM 329 LD+DGL + + Q D L + F+ + Sbjct 803 ---VLQKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFV------------------MYY 841 Query 330 RSGESGVVDTVTLMEGEDGS---KLSKVSVRDERIPELGDKFASRHGQKGVIGHLAPQED 386 +S E+ VVD + + + GS K +++R R P +GDKFASRHGQKG++ L P ED Sbjct 842 KSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAED 901 Query 387 MPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSMEGRRVDGTPFLGEDE----ED 442 MPFTE G+VPD++ NPH PSRMT+G ++E + GK ++ G D TPF+ +E E Sbjct 902 MPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEY 961 Query 443 LRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVSNKLHARSRGPVQVL 502 L+ G+N G E +YSG++G ++EA+IF+GV++YQ+L HMVS+K R+ G + Sbjct 962 FGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRV 1021 Query 503 TRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIHICGNCGMTATENV 562 T QP GR +GG+R GEMERD + HG + L +RL + SDR H+C CG + + Sbjct 1022 TNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLL 1081 Query 563 EQ----------RRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGIAPRLEL 605 E+ R+ C C I + + Y F+ + E+ A+ I +L++ Sbjct 1082 EKPPPSWSAMRNRKYNCTLCSRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 1134 >RecName: Full=Probable DNA-directed RNA polymerase II subunit RPB2 homolog [Invertebrate iridescent virus 6] Sequence ID: Q91F97.1 Length: 1193 Range 1: 600 to 1193 Score:318 bits(816), Expect:8e-95, Method:Compositional matrix adjust., Identities:200/625(32%), Positives:323/625(51%), Gaps:57/625(9%) Query 10 VYVNGSLVGTHPDPHELAEQIREARRIGDVSEMVNVSVKERTREVIINADAGRARRPLLV 69 ++VNG + G P +L +R+ + + V+ +EV I++DAGR RP+L Sbjct 600 IFVNGGICGLTSKPQQLLSDVRDLKLKHCLKYDVSAVFIPELKEVHISSDAGRFIRPVLN 659 Query 70 VEDGEPRISEAEIEALRDGDL---EFDDLVAHGYVEFIDAEEEEDIYVAVDEDDLEEEHT 126 ++ + +G++ F + + +G+V + DA E E +A++ DL T Sbjct 660 LQSIKT-----------NGNVMWNSFQNCLENGHVVYKDAYEIEQSQIAINLQDLSRYPT 708 Query 127 ---HLEIDPQLIFGIGAGMIPYPEHNASPRITMGAGMVKQSLG-LPAANYRIRPDTRQHL 182 +EI + G+ A IP+ EH SPR+ + M KQ++G +P+ + ++ D + Sbjct 709 VYDSMEIHASCMLGVMAAQIPFAEHTQSPRLCYQSSMAKQAIGNIPS--HHVKSDNTTRV 766 Query 183 LHYPQLSMVKTQTTEQIGFDERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHF 242 + Y Q +V TQ E F++ P N +VAV Y GFN ED++++NKAS++R + Sbjct 767 MDYVQRPLVTTQIAEMNRFNDFPNGLNAMVAVAIYTGFNQEDSIILNKASIDRGMFHVVT 826 Query 243 FRTYEGEERRYPGGQEDRFEIPSQDVRGARGEEAYAHLDED------GLVNPETQVDENS 296 ++T EER+ G ++ +P VR Y+ L+++ G+V ++ V N Sbjct 827 YKTIIVEERKI--GVNEKICMPVASVRRMNN---YSLLEDNPESPYFGVVKVKSFVKRND 881 Query 297 VLLGKTSPPRFLEEPDDMGGLSPQ-KRRET--SVTMRSGESGVVDTVTLMEGEDGSKLSK 353 VL+GK + +S R+ET S + E G VD + + + G + K Sbjct 882 VLVGKV-----------ITKISKDGTRQETDHSTIVSISEEGKVDRI-IRTSKKGILMFK 929 Query 354 VSVRDERIPELGDKFASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGH 413 + + ++ PE+GDKF S QKG +G + + DMPF E+G +PD+++NPH LPSRMT+ Sbjct 930 IVIAQQKRPEIGDKFCSAMAQKGTVGMILEEVDMPFMEDGSIPDMIINPHCLPSRMTINQ 989 Query 414 ILEMIGGKLGSMEGRRV-DGTPFLGEDEED-------LRSGLEDVGFNSAGKETMYSGVT 465 I+ I GK + D +PF E L LE+ G+N G ETM G Sbjct 990 IMASIMGKTCCAKNETFGDASPFQESSLEKPQDKIHALCKELEECGYNYNGTETMMCGWN 1049 Query 466 GEKIEAEIFVGVIFYQKLYHMVSNKLHARSRGPVQ--VLTRQPTEGRAREGGLRIGEMER 523 G+K+ AEIF G ++Y +L HMVS+K+ +R+ + +TRQP GRA EGGLRIGEME+ Sbjct 1050 GKKLRAEIFFGPVYYHRLTHMVSDKIFSRASTNQKRHAITRQPLNGRANEGGLRIGEMEK 1109 Query 524 DVFIGHGAAMTLKERLLDESDREFIHICGNCGMTATENVEQRRVYCPNCGEETDIHEIEM 583 D + HG + L E++ D+SD+ I++C C Q +C C DI + Sbjct 1110 DCMLVHGISKFLHEKMFDQSDKFIINLCVPCKSYFKVVKTQNGFFCSGCN-GIDIVKFNC 1168 Query 584 SYAFKLLLDEMKALGIAPRLELEDA 608 +A KL E+ A+G ++++A Sbjct 1169 PFAAKLFFQELTAMGQKLEFKVKNA 1193 >RecName: Full=DNA-directed RNA polymerase I subunit RPA2; Short=RNA polymerase I subunit 2; AltName: Full=DNA-directed RNA polymerase I 135 kDa polypeptide; Short=RPA135 [Mus musculus] Sequence ID: P70700.2 Length: 1135 Range 1: 632 to 1134 Score:315 bits(808), Expect:5e-94, Method:Compositional matrix adjust., Identities:183/525(35%), Positives:279/525(53%), Gaps:43/525(8%) Query 102 EFIDAEEEEDIYVAVDEDDLEEE-HTHLEIDPQLIFGIGAGMIPYPEHNASPRITMGAGM 160 E I E+ + VA+ ED++ TH E+ P + + A IP+ +HN SPR M Sbjct 632 ELIGTMEQLFMNVAIFEDEVFGGISTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQM 691 Query 161 VKQSLGLPAANYRIRPDTRQHLLHYPQLSMVKTQTTEQIGFDERPAAQNFVVAVMSYEGF 220 KQ++G P Y+ R D + + L PQ +V+ + D P N +VAV+SY G+ Sbjct 692 GKQTMGFPLLTYQNRSDNKLYRLQTPQSPLVRPCMYDFYDMDNYPIGTNAIVAVISYTGY 751 Query 221 NIEDALVMNKASVERALARSHFFRT-YEGEERRYPGGQEDR-FEIPSQDVRGARGEEAYA 278 ++EDA+++NKAS ER A +++ + ++ G+++ F + D R Sbjct 752 DMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKFKQGEDNLVFGVKPGDPR------VMQ 805 Query 279 HLDEDGLVNPETQVDENSVLLGKTSPPRFLEEPDDMGG-LSPQKRRETSVTMRSGESGVV 337 LD+DGL +G LE D L+ V +S E+ VV Sbjct 806 KLDDDGLP-----------FIGAK-----LEYGDPYYSYLNLNTGEGFVVYYKSKENCVV 849 Query 338 DTVTLMEGEDGS---KLSKVSVRDERIPELGDKFASRHGQKGVIGHLAPQEDMPFTEEGV 394 D + + + GS K ++VR R P +GDKFASRHGQKG++ L P EDMPFTE G+ Sbjct 850 DNIKVCSNDMGSGKFKCICITVRIPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGM 909 Query 395 VPDLVVNPHALPSRMTVGHILEMIGGKLGSMEGRRVDGTPFLGEDE----EDLRSGLEDV 450 +PD++ NPH PSRMT+G ++E + GK ++ G D TPF+ +E E L+ Sbjct 910 MPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAA 969 Query 451 GFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGR 510 G+N G E +YSG++G ++EA+IF+GV++YQ+L HMVS+K R+ G +T QP GR Sbjct 970 GYNFYGTERLYSGISGMELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPLGGR 1029 Query 511 AREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIHICGNCGMTATENVEQ------ 564 +GG+R GEMERD + HG + L +RL + SDR H+C CG + +E+ Sbjct 1030 NVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHMCVECGSLLSPLLEKPPPSWS 1089 Query 565 ----RRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGIAPRLEL 605 R+ C CG I + + Y F+ + E+ A+ I +L++ Sbjct 1090 AMRNRKYNCTVCGRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 1134 >RecName: Full=DNA-directed RNA polymerases IV and V subunit 2; AltName: Full=DNA-directed RNA polymerase D subunit 2a; Short=AtNRPD2a; Short=Nuclear RNA polymerase D 2a; AltName: Full=Nuclear RNA polymerase E 2; AltName: Full=Protein DEFECTIVE IN MERISTEM SILENCING 2; AltName: Full=Protein DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 2; AltName: Full=RNA polymerase IV subunit 2a; Short=POL IV 2a [Arabidopsis thaliana] Sequence ID: Q9LK40.1 Length: 1172 Range 1: 573 to 1164 Score:311 bits(798), Expect:2e-92, Method:Compositional matrix adjust., Identities:201/614(33%), Positives:304/614(49%), Gaps:44/614(7%) Query 9 KVYVNGSLVGTHPDPHELAEQIREARRIGDVSEMVNVSVKERTREVIINADAGRARRPLL 68 KV +NG VG D +++ RR ++ + + + EV I DAGR RPLL Sbjct 573 KVLLNGDWVGLCADSESFVAELKSRRRQSELPREMEIKRDKDDNEVRIFTDAGRLLRPLL 632 Query 69 VVEDGEPRISEAEIEALRDGDLEFDDLVAHGYVEFIDAEEEEDIYVAVDEDDLEEE---H 125 VVE+ + +++ + FD L+ HG +E I EEEED A L +E + Sbjct 633 VVENLQ------KLKQEKPSQYPFDHLLDHGILELIGIEEEEDCNTAWGIKQLLKEPKIY 686 Query 126 THLEIDPQLIFGIGAGMIPYPEHNASPRITMGA-GMVKQSLGLPAANYRIRPDTRQHLLH 184 TH E+D + G+ ++P+ H+ R+ + +Q++G + N IR DT L Sbjct 687 THCELDLSFLLGVSCAVVPFANHDHGRRVLYQSQKHCQQAIGFSSTNPNIRCDTLSQQLF 746 Query 185 YPQLSMVKTQTTEQIGFDERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFR 244 YPQ + KT +E + + QN +VAV + G+N ED++VMNKAS+ER + RS R Sbjct 747 YPQKPLFKTLASECLKKEVLFNGQNAIVAVNVHLGYNQEDSIVMNKASLERGMFRSEQIR 806 Query 245 TYEGEERRYPGGQEDRFEIPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSP 304 +Y+ E + + + Q + L++DG + +++G+ + Sbjct 807 SYKAEVDAKDSEKRKKMDELVQFGKTHSKIGKVDSLEDDGFPFIGANMSTGDIVIGRCT- 865 Query 305 PRFLEEPDDMGGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDERIPEL 364 + + S+ ++ E G+V V L ++G + VS+R R P L Sbjct 866 ---------------ESGADHSIKLKHTERGIVQKVVLSSNDEGKNFAAVSLRQVRSPCL 910 Query 365 GDKFASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMI------ 418 GDKF+S HGQKGV+G+L Q++ PFT +G+VPD+V+NPHA PSR T G +LE Sbjct 911 GDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALSKGIA 970 Query 419 -----GGKLGSMEGRRVDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEI 473 G + TPF ++ L GF+ G E +Y+G +GE + + I Sbjct 971 CPIQKEGSSAAYTKLTRHATPFSTPGVTEITEQLHRAGFSRWGNERVYNGRSGEMMRSMI 1030 Query 474 FVGVIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAM 533 F+G FYQ+L HM +K+ R+ GPV LTRQP R R GG++ GEMERD I HGA+ Sbjct 1031 FMGPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASA 1090 Query 534 TLKERLLDESDREFIHICGNCGM-------TATENVEQRRVYCPNCGEETDIHEIEMSYA 586 L ERL SD +HIC C T + + R YC C + + + Y Sbjct 1091 NLHERLFTLSDSSQMHICRKCKTYANVIERTPSSGRKIRGPYCRVCVSSDHVVRVYVPYG 1150 Query 587 FKLLLDEMKALGIA 600 KLL E+ ++GI Sbjct 1151 AKLLCQELFSMGIT 1164 >RecName: Full=DNA-directed RNA polymerase I subunit RPA2; Short=RNA polymerase I subunit 2 [Danio rerio] Sequence ID: B8JKD7.1 Length: 1132 Range 1: 627 to 1132 Score:311 bits(797), Expect:2e-92, Method:Compositional matrix adjust., Identities:184/527(35%), Positives:275/527(52%), Gaps:40/527(7%) Query 99 GYVEFIDAEEEEDIYVAVDEDDLEE-EHTHLEIDPQLIFGIGAGMIPYPEHNASPRITMG 157 G E I E+ + V + E ++E+ TH E+ P + + A IP+ +HN SPR Sbjct 627 GKQELIGIFEQVYLNVGIFEKEIEDGVTTHQELFPHSMLSVVAEFIPFSDHNQSPRNMYQ 686 Query 158 AGMVKQSLGLPAANYRIRPDTRQHLLHYPQLSMVKTQTTEQIGFDERPAAQNFVVAVMSY 217 M KQ++G P +Y+ R D + + L PQ +V+ + D P N +VAV+SY Sbjct 687 CQMSKQTMGFPLHSYQYRSDNKLYRLQTPQSPLVRPAMYDHYDVDNYPIGTNAIVAVISY 746 Query 218 EGFNIEDALVMNKASVERALARSHFFRT-YEGEERRYPGGQEDRFEIPSQDVRGARGEEA 276 G+++EDA+++NK+S ER A ++T + G F + D + Sbjct 747 TGYDMEDAMIVNKSSWERGFAHGSVYKTEIIDLSEKVKGDDSIVFGVKPGD------PKV 800 Query 277 YAHLDEDGLVNPETQVDENSVLLGKTSPPRFLEEPDDMGGLSPQKRRETSVTMRSGESGV 336 LD DGL P SVL K P + G +S + + ES V Sbjct 801 MGKLDADGL--PFI----GSVL--KYGDPFY-------GYISLNTGQSHVYFYKYQESCV 845 Query 337 VDTVTLMEGEDGS---KLSKVSVRDERIPELGDKFASRHGQKGVIGHLAPQEDMPFTEEG 393 VD + + E G+ K V+ R R P +GDKFASRHGQKG++ L P EDMPFTE G Sbjct 846 VDNIKVCSNETGTGRFKRICVTSRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESG 905 Query 394 VVPDLVVNPHALPSRMTVGHILEMIGGKLGSMEGRRVDGTPFLGEDE----EDLRSGLED 449 + PD++ NPH PSRMT+G ++E + GK S+ G D TPF +E E L+ Sbjct 906 MSPDILFNPHGFPSRMTIGMLIESMAGKSASLHGLCHDATPFTFSEENSALEHFGELLKA 965 Query 450 VGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEG 509 G+N G E +YSG++G ++EA+IF+GV++YQ+L HMVS+K R+ G +T QP G Sbjct 966 AGYNYYGTERLYSGLSGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPMGG 1025 Query 510 RAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIHICGNCGMTATENVEQ----- 564 R +GG+R GEMERD + HG + L +RL + SDR +C +CG + +E+ Sbjct 1026 RNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAQVCMDCGSLLSPLLEKPPPNW 1085 Query 565 -----RRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGIAPRLELE 606 R+ C C + I + + Y FK + E+ A+ I +L+++ Sbjct 1086 SATRHRKTICLLCNKSDSIETVSVPYVFKYFVAELAAMNIKIKLDVK 1132 >RecName: Full=DNA-directed RNA polymerase D subunit 2b; Short=AtNRPD2b; Short=Nuclear RNA polymerase D 2b; AltName: Full=RNA polymerase IV subunit 2b; Short=POL IV 2b [Arabidopsis thaliana] Sequence ID: Q9LV32.1 Length: 1119 Range 1: 519 to 1111 Score:311 bits(796), Expect:2e-92, Method:Compositional matrix adjust., Identities:203/615(33%), Positives:303/615(49%), Gaps:45/615(7%) Query 9 KVYVNGSLVGTHPDPHELAEQIREARRIGDVSEMVNVSVKERTREVIINADAGRARRPLL 68 KV +NG VG D +++ RR ++ + + + EV I DAGR RPLL Sbjct 519 KVLLNGDWVGLCADSESFVGELKSRRRQSELPLEMEIKRDKDDNEVRIFTDAGRLLRPLL 578 Query 69 VVEDGEPRISEAEIEALRDGDLEFDDLVAHGYVEFIDAEEEEDIYVAVDEDDLEEE---H 125 VVE+ +++ + F L+ G +E I EEEED A L +E + Sbjct 579 VVENLH------KLKQDKPTQYPFKHLLDQGILELIGIEEEEDCTTAWGIKQLLKEPKNY 632 Query 126 THLEIDPQLIFGIGAGMIPYPEHNASPRITMGA-GMVKQSLGLPAANYRIRPDTRQHLLH 184 TH E+D + G+ ++P+ H+ R+ + +Q++G + N IR DT L Sbjct 633 THCELDLSFLLGVSCAIVPFANHDHGKRVLYQSQKHCQQAIGFSSTNPNIRCDTLSQQLF 692 Query 185 YPQLSMVKTQTTEQIGFDERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFR 244 YPQ + KT +E + + QN +VAV + G+N ED++VMNKAS+ER + RS R Sbjct 693 YPQKPLFKTLASECLEKEVLFNGQNAIVAVNVHLGYNQEDSIVMNKASLERGMFRSEQIR 752 Query 245 TYEGEERRYPGGQEDRFEIPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSP 304 +Y+ E + + + Q + L++DG + +++G+ + Sbjct 753 SYKAEVDTKDSEKRKKMDELVQFGKTYSKIGKVDSLEDDGFPFIGANMSTGDIVIGRCT- 811 Query 305 PRFLEEPDDMGGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDERIPEL 364 + + S+ ++ E G+V V L ++G + VS+R R P L Sbjct 812 ---------------ESGADHSIKLKHTERGIVQKVVLSSNDEGKNFAAVSLRQVRSPCL 856 Query 365 GDKFASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEM-----IG 419 GDKF+S HGQKGV+G+L Q++ PFT +G+VPD+V+NPHA PSR T G +LE I Sbjct 857 GDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALSKGIA 916 Query 420 GKLGSMEGRRV-------DGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAE 472 + EG TPF ++ L GF+ G E +Y+G +GE + + Sbjct 917 CPIQKKEGSSAAYTKLTRHATPFSTPGVTEITEQLHRAGFSRWGNERVYNGRSGEMMRSL 976 Query 473 IFVGVIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAA 532 IF+G FYQ+L HM NK+ R+ GPV LTRQP R R GG+R GEMERD I HGA+ Sbjct 977 IFMGPTFYQRLVHMSENKVKFRNTGPVHPLTRQPVADRKRFGGIRFGEMERDCLIAHGAS 1036 Query 533 MTLKERLLDESDREFIHICGNCGM-------TATENVEQRRVYCPNCGEETDIHEIEMSY 585 L ERL SD +HIC C T + + R YC C + + + Y Sbjct 1037 ANLHERLFTLSDSSQMHICRKCKTYANVIERTPSSGRKIRGPYCRVCASSDHVVRVYVPY 1096 Query 586 AFKLLLDEMKALGIA 600 KLL E+ ++GI Sbjct 1097 GAKLLCQELFSMGIT 1111 >RecName: Full=DNA-directed RNA polymerase I subunit 2; AltName: Full=DNA-directed RNA polymerase I subunit RPA2; Short=DNA polymerase I subunit A2; AltName: Full=Nuclear RNA polymerase A2 [Arabidopsis thaliana] Sequence ID: F4I366.1 Length: 1178 Range 1: 675 to 1172 Score:311 bits(797), Expect:3e-92, Method:Compositional matrix adjust., Identities:186/518(36%), Positives:271/518(52%), Gaps:56/518(10%) Query 126 THLEIDPQLIFGIGAGMIPYPEHNASPRITMGAGMVKQSLGLPAANYRIRPDTRQHLLHY 185 TH EI P + + A + P+ +HN SPR M KQ++ + R D + + L Sbjct 675 THEEIHPTGMISVVANLTPWSDHNQSPRNMYQCQMAKQTMAYSTQALQFRADQKIYHLQT 734 Query 186 PQLSMVKTQTTEQIGFDERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRT 245 PQ +V+T+T DE P N +VAV+++ GF++EDA+++NK+SVER + ++T Sbjct 735 PQSPVVRTKTYTTYSIDENPTGTNAIVAVLAHTGFDMEDAMILNKSSVERGMCHGQIYQT 794 Query 246 YEGEERRYPGGQEDRFEIPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPP 305 E Q RF+ S+ R + + + +D DGL + +G+ P Sbjct 795 ----ENIDLSDQNSRFDSGSKSFRRSTNKAEHFRIDADGLPS-----------VGQKLYP 839 Query 306 RFLEEPDDMGGLSPQKRRETSVTMRSGESGV-VDTVTL-MEGEDGSKLSKVSVRDERIPE 363 +EP + + +T R G V VD V++ M+ + + + + R R P Sbjct 840 ---DEP--YCSIYDEVTNKTRHMKRKGTDPVIVDFVSVDMKSKKHPQRANIRFRHARNPI 894 Query 364 LGDKFASRHGQKGVIGHLAPQEDMPFT-EEGVVPDLVVNPHALPSRMTVGHILEMIGGKL 422 +GDKF+SRHGQKGV L P DMPF G+ PDL++NPHA PSRMT+ +LE I K Sbjct 895 IGDKFSSRHGQKGVCSQLWPDIDMPFNGVTGMRPDLIINPHAFPSRMTIAMLLESIAAKG 954 Query 423 GSMEGRRVDGTPFL-------GEDE-------EDLRSGLEDVGFNSAGKETMYSGVTGEK 468 GS+ G+ VD TPF GE+E +DL S L++ GFN G ET+YSG G + Sbjct 955 GSLHGKFVDATPFRDAVKKTNGEEESKSSLLVDDLGSMLKEKGFNHYGTETLYSGYLGVE 1014 Query 469 IEAEIFVGVIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIG 528 ++ EIF+G ++YQ+L HMVS+K RS G V LT QP +GR R GG+R GEMERD + Sbjct 1015 LKCEIFMGPVYYQRLRHMVSDKFQVRSTGQVDQLTHQPIKGRKRGGGIRFGEMERDSLLA 1074 Query 529 HGAAMTLKERLLDESDREFIHICGNCGMTATE---NVEQ----------------RRVYC 569 HGA+ L +RL SD +C CG T NV+Q ++V C Sbjct 1075 HGASYLLHDRLHTSSDHHIADVCSLCGSLLTSSVVNVQQKKLIQEIGKLPPGRTPKKVTC 1134 Query 570 PNCGEETDIHEIEMSYAFKLLLDEMKALGIAPRLELED 607 +C + + M Y F+ L E+ ++ I L+L D Sbjct 1135 YSCKTSKGMETVAMPYVFRYLAAELASMNIKMTLQLSD 1172 >RecName: Full=DNA-directed RNA polymerase I subunit RPA2; Short=RNA polymerase I subunit 2; AltName: Full=A127; AltName: Full=RPA135 [Rattus norvegicus] Sequence ID: O54888.1 Length: 1135 Range 1: 671 to 1134 Score:310 bits(794), Expect:5e-92, Method:Compositional matrix adjust., Identities:175/486(36%), Positives:257/486(52%), Gaps:42/486(8%) Query 140 AGMIPYPEHNASPRITMGAGMVKQSLGLPAANYRIRPDTRQHLLHYPQLSMVKTQTTEQI 199 A IP+ +HN SPR M KQ++G P Y+ R D + + L PQ +V+ + Sbjct 671 ANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPCMYDHY 730 Query 200 GFDERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRT--YEGEERRYPGGQ 257 D P N +VAV+SY G+++EDA+++NKAS ER A +++ + E+ G Sbjct 731 DMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKFKQGDD 790 Query 258 EDRFEIPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPPRFLEEPDD-MGG 316 F + D R LD DGL +G LE D G Sbjct 791 SLVFGVKPGDPR------VMQKLDNDGL-----------PFIGAK-----LEFGDPYYGY 828 Query 317 LSPQKRRETSVTMRSGESGVVDTVTLMEGEDGS---KLSKVSVRDERIPELGDKFASRHG 373 L+ V +S E+ VVD + + + GS K V+VR R P +GDKFASRHG Sbjct 829 LNLNTGEGFVVYYKSKENCVVDNIKVCSNDTGSGKFKCVCVTVRVPRNPTIGDKFASRHG 888 Query 374 QKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSMEGRRVDGT 433 QKG++ L P EDMPFTE G++PD++ NPH PSRMT+G ++E + GK ++ G D T Sbjct 889 QKGILSRLWPAEDMPFTESGMMPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDAT 948 Query 434 PFLGEDE----EDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVSN 489 PF+ +E E L+ G+N G E +YSG++G ++EA+IF+GV++YQ+L HMVS+ Sbjct 949 PFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGMELEADIFIGVVYYQRLRHMVSD 1008 Query 490 KLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIH 549 K R+ G +T QP GR +GG+R GEMERD + HG + L +RL + SDR H Sbjct 1009 KFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAH 1068 Query 550 ICGNCGMTATENVEQ----------RRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGI 599 +C CG + +E+ R+ C CG I + + Y F+ + E+ A+ I Sbjct 1069 VCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTVCGRSDSIDTVSVPYVFRYFVAELAAMNI 1128 Query 600 APRLEL 605 +L++ Sbjct 1129 KVKLDV 1134 >RecName: Full=DNA-directed RNA polymerase I subunit RPA2; Short=RNA polymerase I subunit 2; AltName: Full=RPA135 [Pongo abelii] Sequence ID: Q5REE8.1 Length: 1136 Range 1: 632 to 1135 Score:310 bits(794), Expect:5e-92, Method:Compositional matrix adjust., Identities:181/528(34%), Positives:276/528(52%), Gaps:48/528(9%) Query 102 EFIDAEEEEDIYVAVDEDDLEE-EHTHLEIDPQLIFGIGAGMIPYPEHNASPRITMGAGM 160 E I E+ + VA+ ED++ TH E+ P + + A IP+ +HN SPR M Sbjct 632 ELIGTMEQIFMNVAIFEDEVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQM 691 Query 161 VKQSLGLPAANYRIRPDTRQHLLHYPQLSMVKTQTTEQIGFDERPAAQNFVVAVMSYEGF 220 KQ++G P Y+ R D + + L PQ +V+ + D P N +VAV+SY G+ Sbjct 692 GKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGY 751 Query 221 NIEDALVMNKASVERALARSHFFRT--YEGEERRYPGGQEDRFEIPSQDVRGARGEEAYA 278 ++EDA+++NKAS ER A +++ + E+ G F + D R Sbjct 752 DMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGMKPGDPR------ILQ 805 Query 279 HLDEDGL--VNPETQV-DENSVLLGKTSPPRFLEEPDDMGGLSPQKRRETSVTMRSGESG 335 LD+DGL + + Q D L + F+ + +S E+ Sbjct 806 KLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFV------------------MYYKSKENC 847 Query 336 VVDTVTLMEGEDGS---KLSKVSVRDERIPELGDKFASRHGQKGVIGHLAPQEDMPFTEE 392 VVD + + + GS K +++R R P +GDKFASRHGQKG++ L P EDMPFTE Sbjct 848 VVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTES 907 Query 393 GVVPDLVVNPHALPSRMTVGHILEMIGGKLGSMEGRRVDGTPFLGEDE----EDLRSGLE 448 G+VPD++ NPH PSRMT+G ++E + GK ++ G D TPF+ +E E L+ Sbjct 908 GMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLK 967 Query 449 DVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVSNKLHARSRGPVQVLTRQPTE 508 G+N G E +YSG++G ++EA+IF+GV++YQ+L HMVS+K R+ G +T QP Sbjct 968 AAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIG 1027 Query 509 GRAREGGLRIGEMERDVFIGHGAA-MTLKERLLDESDREFIHICGNCGMTATENVEQ--- 564 GR +GG+R GEMERD + HG + L +RL + SDR H+C CG + +E+ Sbjct 1028 GRNVQGGIRFGEMERDALLAHGTSFFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPP 1087 Query 565 -------RRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGIAPRLEL 605 R+ C C I + + Y F+ + E+ A+ I +L++ Sbjct 1088 SWSAMRNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 1135 >RecName: Full=Putative DNA-directed RNA polymerase II subunit RPB2 homolog [Frog virus 3 (isolate Goorha)] Sequence ID: Q6GZR3.1 Length: 1221 Range 1: 739 to 1217 Score:309 bits(792), Expect:2e-91, Method:Compositional matrix adjust., Identities:177/496(36%), Positives:266/496(53%), Gaps:52/496(10%) Query 140 AGMIPYPEHNASPRITMGAGMVKQSLGLPAANYRIRPDTRQHLLHYPQLSMVKTQTTEQI 199 + +IP+ +H SPR + M KQ++G PA N R D H L YPQ S+V +++ +++ Sbjct 739 SSVIPFYDHTQSPRNAYQSNMGKQAIGFPAVNCSDRYDATLHRLDYPQKSLVDSRSVKRL 798 Query 200 GFDERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGEERRYPGGQED 259 GFDE VVA+M+ GFN ED++V+N +S++R L +RT ++R + Sbjct 799 GFDEMAHGALPVVAIMTAGGFNQEDSVVLNASSLDRGLFSCVTYRTVSCADKRRTKYDSE 858 Query 260 RFEIPSQDVRGARGEEAYAHLDEDGLVNPET----------------------------- 290 +P +R E Y L +DG+++P Sbjct 859 VVCLPDWGLRNR--EWDYDLLGDDGVIDPSCAGALARRVEGKRKAAKRPAGQRTGGGPAG 916 Query 291 -----QVDENSVLLGKTSPPRFLEEPDDMGGLSPQKRRETSVTMRSGESGVVDTVTLMEG 345 + +VL+GK S +G RR+ S+T++ E G +D VT+ Sbjct 917 LCDALWIPAGTVLVGKVS--------HSLGPGGNPMRRDVSLTVKQSEEGYLDRVTVDVD 968 Query 346 EDGSKLSKVSVRDERIPELGDKFASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHAL 405 DG KL KV +R R PE+GDKFAS QKG G + QEDMPF ++GVVPDL++NPHA Sbjct 969 SDGKKLVKVRLRTPRHPEMGDKFASFTAQKGTCGAVLTQEDMPFDKDGVVPDLIINPHAF 1028 Query 406 PSRMTVGHILEMIGGKLGSMEGRRVDGTPFLGED-EEDLRSGLEDVGFNSAGKETMYSGV 464 PSRMTV ++L+M G G+ D T F ED D+ ++ G + ++SG Sbjct 1029 PSRMTVNYLLQMCFGTAACKLGKTYDATAFEREDVVRDIAEAAKEAGID-CWDSVLHSGS 1087 Query 465 TGEKIEAEIFVGVIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERD 524 TG ++ +IF+ YQ+L HMVS K+H+R+ GP LTRQP GR+REGG++IGEME+ Sbjct 1088 TGRRLPTKIFMAPCPYQRLKHMVSGKMHSRTHGPTDALTRQPVAGRSREGGIKIGEMEQW 1147 Query 525 VFIGHGAAMTLKERLLDESDREFIHICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMS 584 I HGA+ +LKE + D SD+ + +C CG + YC C + TD+ +++ Sbjct 1148 CKISHGASESLKESVYDMSDKYEVPVCKECG-----RISDHFEYCRMC-DATDMSLVKLP 1201 Query 585 YAFKLLLDEMKALGIA 600 Y K+L E++++GI+ Sbjct 1202 YTTKILFQELRSIGIS 1217 >RecName: Full=DNA-directed RNA polymerase I subunit RPA2 homolog [Caenorhabditis elegans] Sequence ID: Q27493.1 Length: 1127 Range 1: 610 to 1119 Score:301 bits(772), Expect:6e-89, Method:Compositional matrix adjust., Identities:178/533(33%), Positives:269/533(50%), Gaps:50/533(9%) Query 101 VEFIDAEEEEDIYVAVDEDDLEEEHT-HLEIDPQLIFGIGAGMIPYPEHNASPRITMGAG 159 VE I E+ + V +D ++ E T H E+ P +F +IP+P+HN SPR Sbjct 610 VEHIGTFEQVYLSVVLDPEEAEPGVTMHQELHPSCLFSFAGNLIPFPDHNQSPRNVYQCQ 669 Query 160 MVKQSLGLPAANYRIRPDTRQHLLHYPQLSMVKTQTTEQIGFDERPAAQNFVVAVMSYEG 219 M KQ++G + R D + + L +PQ M+K + E+ DE P N VAV+SY G Sbjct 670 MGKQTMGTAVHAWHSRADNKMYRLQFPQQPMLKLEAYEKYEMDEYPLGTNACVAVISYTG 729 Query 220 FNIEDALVMNKASVERALARSHFFRTYEGEERRYPGGQEDRFEIPSQDVRGARGEEAYAH 279 +++EDA+ +NKAS +R A + ER + +R I ++ R E Sbjct 730 YDMEDAMTINKASYQRGFAHGTVIKV----ERINLVTERERKTIFYRNPR-----EEIKT 780 Query 280 LDEDGLVNPETQVDENSVLLGKTSPPRFLEEPDDMGGLSPQKRRETSVTMRSGESGVVDT 339 + DGL P + L + F E D R G+V Sbjct 781 VGPDGLPIPGRRY-----FLDEVYYVTFNMETGDF-------RTHKFHYAEPAYCGLVRI 828 Query 340 VTLMEGEDGSKLSKVSVRDERIPELGDKFASRHGQKGVIGHLAPQEDMPFTEEGVVPDLV 399 V EG+ G+K + + R ER P +GDKFASRHGQKG+ L P E +PF+E G+VPD++ Sbjct 829 VEQGEGDSGAKHALIQWRIERNPIIGDKFASRHGQKGINSFLWPVESLPFSETGMVPDII 888 Query 400 VNPHALPSRMTVGHILEMIGGKLGSMEGRRVDGTPF-LGEDEEDLRSG---LEDVGFNSA 455 NPH PSRMT+G ++E + GK + G D +PF ED + L G+N Sbjct 889 FNPHGFPSRMTIGMMIESMAGKAAATHGENYDASPFVFNEDNTAINHFGELLTKAGYNYY 948 Query 456 GKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGG 515 G ET YSGV G ++E +IF G+++YQ+L HM+++K R+ GP+ +T QP +GR + GG Sbjct 949 GNETFYSGVDGRQMEMQIFFGIVYYQRLRHMIADKFQVRATGPIDPITHQPVKGRKKGGG 1008 Query 516 LRIGEMERDVFIGHGAAMTLKERLLDESDREFIHICGNCGMTAT---------------- 559 +R GEMERD I HG + L++RLL+ SDR+ + C CG + Sbjct 1009 IRFGEMERDAIIAHGTSFVLQDRLLNCSDRDVAYACRRCGSLLSVLMSSRAGSHLLKKKR 1068 Query 560 ------ENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGIAPRLELE 606 + E +R C C ++ + +++ F+ L E+ A+ + +L +E Sbjct 1069 KDDEPLDYTETQR--CRTCDKDDQVFLLQVPRVFRYLTAELAAMNVKIKLGIE 1119 >RecName: Full=DNA-directed RNA polymerase I subunit RPA2; AltName: Full=DNA-directed RNA polymerase I polypeptide 2; Short=RNA polymerase I subunit 2 [Eremothecium gossypii ATCC 10895] Sequence ID: Q75DS1.2 Length: 1196 Range 1: 661 to 1105 Score:299 bits(766), Expect:8e-88, Method:Compositional matrix adjust., Identities:173/471(37%), Positives:255/471(54%), Gaps:47/471(9%) Query 110 EDIY--VAVDEDDLEEE-HTHLEIDPQLIFGIGAGMIPYPEHNASPRITMGAGMVKQSLG 166 E +Y +AV ++++ HTH+E P I I A + P+ + N SPR M KQ++G Sbjct 661 EQVYMDIAVTPEEIQNNVHTHVEFSPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMG 720 Query 167 LPAANYRIRPDTRQHLLHYPQLSMVKTQTTEQIGFDERPAAQNFVVAVMSYEGFNIEDAL 226 P R D + + L Q +VK + G D P N VVAV+SY G++++DA+ Sbjct 721 TPGVALCHRSDNKLYRLQSGQTPIVKANLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAM 780 Query 227 VMNKASVERALARSHFFRTYE-----GEERRYPGGQEDRF---EIPSQDVRGARGEEAYA 278 ++NK++ ER + ++T + R P Q F E P +E Sbjct 781 IINKSADERGFSYGTVYKTEKIDLSLSRGRGDPVTQHFGFGTDEWP---------KEWLE 831 Query 279 HLDEDGLVNPETQVDENSVLLGKTSPPRFLEEPDDMGGLSPQKRRETSV-TMRSGESGVV 337 LDEDGL ++G ++EE D + +T + T S E + Sbjct 832 KLDEDGLP-----------IIGS-----YVEEGDPICAYFDDTLNKTKIKTYHSSEPAYI 875 Query 338 DTVTLMEGEDGSKLSK-----VSVRDERIPELGDKFASRHGQKGVIGHLAPQEDMPFTEE 392 + VTL+ G++ +K + + R R+P++GDKF+SRHGQKGV P DMPF+E Sbjct 876 EEVTLI-GDESNKFQELQYITIKYRIRRVPQIGDKFSSRHGQKGVCSRKWPTVDMPFSET 934 Query 393 GVVPDLVVNPHALPSRMTVGHILEMIGGKLGSMEGRRVDGTPFLGEDEED----LRSGLE 448 G+ PD+++NPHA PSRMT+G +E + GK G++ G D TP+ +E+ L Sbjct 935 GIQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDATPWTFSEEDTPADYFGDQLL 994 Query 449 DVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVSNKLHARSRGPVQVLTRQPTE 508 G+N G E MYSG TGE++ A+I++GV++YQ+L HMV++K RS GPV LT QP + Sbjct 995 KAGYNYHGNEPMYSGATGEELRADIYIGVVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVK 1054 Query 509 GRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIHICGNCGMTAT 559 GR R GG+R+GEMERD IGHG + L++RLL+ SD +C CG T Sbjct 1055 GRKRHGGIRVGEMERDALIGHGTSFLLQDRLLNSSDYTQSAVCRECGSILT 1105 >RecName: Full=DNA-directed RNA polymerase I subunit rpa2; AltName: Full=DNA-directed RNA polymerase I polypeptide 2; Short=RNA polymerase I subunit 2 [Dictyostelium discoideum] Sequence ID: Q54BM1.1 Length: 1130 Range 1: 620 to 1129 Score:296 bits(759), Expect:4e-87, Method:Compositional matrix adjust., Identities:175/533(33%), Positives:274/533(51%), Gaps:46/533(8%) Query 96 VAHGYVEFIDAEEEEDIYVAV-DEDDLEEEHTHLEIDPQLIFGIGAGMIPYPEHNASPRI 154 + G E I +E+ + +AV + ++ TH+E P +F + A + P+ ++N SPR Sbjct 620 LTSGQNELIGPQEQLYMEIAVVPHEVIKGVTTHIETSPTAMFSLLANLTPFSDYNQSPRN 679 Query 155 TMGAGMVKQSLGLPAANYRIRPDTRQHLLHYPQLSMVKTQTTEQIGFDERPAAQNFVVAV 214 M KQ++G P +Y R D + + + Q +V T+ + ++ P N V+AV Sbjct 680 MYQCQMAKQTMGTPLHSYPFRTDNKLYKVQNVQKPIVHTKNQFKFRCNDYPHGCNAVIAV 739 Query 215 MSYEGFNIEDALVMNKASVERALARSHFFRTYEGEERRYPGGQEDRFEIPSQDVRGARGE 274 +S G+++EDA+++NK++ ER ++ E D +R E Sbjct 740 ISNTGYDMEDAMIINKSAYERGFGHGSVYKN----------------EYIDLDQGLSRFE 783 Query 275 EAYAHLDEDGLVNPETQVDENSVLLGKTSPPRF--LEEPDD--MGGLSPQKRRETSVTMR 330 + P T VDE + P L +P + + P R+ + + Sbjct 784 QKKTFFGR-----PNTVVDELDKFIDTDGLPFVGRLIKPGEPYYTYIRPSDGRQVTKDYK 838 Query 331 SGESGVVDTVTLMEGEDG-----SKLSKVSV--RDERIPELGDKFASRHGQKGVIGHLAP 383 E ++ V ++ G +G SK++ + V R R P +GDKF+SRHGQKGV+ L P Sbjct 839 GKEEAYIEDVRIIFGPNGATRDPSKINNICVKLRFNRNPVIGDKFSSRHGQKGVLSQLWP 898 Query 384 QEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSMEGRRVDGTPFLGEDEED- 442 + +MPFTE G+ PD+++NP+A PSRMT+G ++E++ GK G++ G+ D T F ++ Sbjct 899 EINMPFTESGMKPDVIINPNAFPSRMTIGMLVEILAGKAGAIHGKFQDATAFQFDENNTA 958 Query 443 ---LRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVSNKLHARSRGPV 499 L GFN G E MYSG TG++ E EIF GV +YQ+L HMV +K R+ G V Sbjct 959 IDFFGEQLAKAGFNRFGNEQMYSGTTGKEFECEIFFGVCYYQRLRHMVKDKYQVRALGKV 1018 Query 500 QVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIHICGNCGMTAT 559 LTRQP +GR GG+R GEMERD + HGA+ L +RL+ SD I +C CG T T Sbjct 1019 NALTRQPIKGRKVGGGIRFGEMERDSLLAHGASFCLNDRLMKSSDFAKIKVCKLCGSTLT 1078 Query 560 ENVEQRRVY-------CPNCGEETDIHEIEMSYAFKLLLDEMKALGIAPRLEL 605 + ++ Y C +C I I + Y F L+ E+ A+ I +L++ Sbjct 1079 --IYSKKDYSNQTVSECKSCKSSDSIATISIPYVFTYLVAELAAVNITMKLQV 1129 >RecName: Full=DNA-directed RNA polymerase I subunit RPA135; AltName: Full=DNA-directed RNA polymerase I 135 kDa polypeptide; Short=A135; AltName: Full=DNA-directed RNA polymerase I polypeptide 2; Short=RNA polymerase I subunit 2 [Saccharomyces cerevisiae S288C] Sequence ID: P22138.1 Length: 1203 Range 1: 668 to 1131 Score:297 bits(761), Expect:4e-87, Method:Compositional matrix adjust., Identities:178/489(36%), Positives:257/489(52%), Gaps:51/489(10%) Query 110 EDIY--VAVDEDDLEEE-HTHLEIDPQLIFGIGAGMIPYPEHNASPRITMGAGMVKQSLG 166 E +Y +AV +++ HTH+E P I I A + P+ + N SPR M KQ++G Sbjct 668 EQVYMNIAVTPQEIQNNVHTHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMG 727 Query 167 LPAANYRIRPDTRQHLLHYPQLSMVKTQTTEQIGFDERPAAQNFVVAVMSYEGFNIEDAL 226 P R D + + L Q +VK + G D P N VVAV+SY G++++DA+ Sbjct 728 TPGVALCHRSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNGFNAVVAVISYTGYDMDDAM 787 Query 227 VMNKASVERALARSHFFRTYE-----GEERRYPGGQEDRF---EIPSQDVRGARGEEAYA 278 ++NK++ ER ++T + R P Q F E P +E Sbjct 788 IINKSADERGFGYGTMYKTEKVDLALNRNRGDPITQHFGFGNDEWP---------KEWLE 838 Query 279 HLDEDGLVNPETQVDENSVLLGKTSPPRFLEEPDDMGGLSPQKRRETSV-TMRSGESGVV 337 LDEDGL T ++EE D + +T + T S E + Sbjct 839 KLDEDGLPYIGT----------------YVEEGDPICAYFDDTLNKTKIKTYHSSEPAYI 882 Query 338 DTVTLM--EGEDGSKLSKVSV--RDERIPELGDKFASRHGQKGVIGHLAPQEDMPFTEEG 393 + V L+ E +L VS+ R R P++GDKF+SRHGQKGV P DMPF+E G Sbjct 883 EEVNLIGDESNKFQELQTVSIKYRIRRTPQIGDKFSSRHGQKGVCSRKWPTIDMPFSETG 942 Query 394 VVPDLVVNPHALPSRMTVGHILEMIGGKLGSMEGRRVDGTPFLGEDEED----LRSGLED 449 + PD+++NPHA PSRMT+G +E + GK G++ G D TP++ +++ L Sbjct 943 IQPDIIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWIFNEDDTPADYFGEQLAK 1002 Query 450 VGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEG 509 G+N G E MYSG TGE++ A+I+VGV++YQ+L HMV++K RS GPV LT QP +G Sbjct 1003 AGYNYHGNEPMYSGATGEELRADIYVGVVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKG 1062 Query 510 RAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIHICGNCG--MTATENVEQ--- 564 R R GG+R+GEMERD IGHG + L++RLL+ SD +C CG +T ++V + Sbjct 1063 RKRHGGIRVGEMERDALIGHGTSFLLQDRLLNSSDYTQASVCRECGSILTTQQSVPRIGS 1122 Query 565 -RRVYCPNC 572 V C C Sbjct 1123 ISTVCCRRC 1131 >RecName: Full=DNA-directed RNA polymerase I subunit RPA2; Short=RNA polymerase I subunit 2; AltName: Full=RNA polymerase I subunit B; AltName: Full=RPA135 [Drosophila melanogaster] Sequence ID: P20028.2 Length: 1129 Range 1: 629 to 1128 Score:294 bits(752), Expect:3e-86, Method:Compositional matrix adjust., Identities:175/526(33%), Positives:271/526(51%), Gaps:45/526(8%) Query 101 VEFIDAEEEEDIYVAVDEDDLEEEHT-HLEIDPQLIFGIGAGMIPYPEHNASPRITMGAG 159 VE+I E+ + +A+D ++ + T HLE+ A +IP P++N SPR Sbjct 629 VEYIGTLEQLYMEIAIDAKEMYPDFTTHLELAKTHFMSNLANLIPMPDYNQSPRNMYQCQ 688 Query 160 MVKQSLGLPAANYRIRPDTRQHLLHYPQLSMVKTQTTEQIGFDERPAAQNFVVAVMSYEG 219 M KQ++G P N+ + + + L P + + + I D+ N +VAV+SY G Sbjct 689 MGKQTMGTPCLNWPKQAANKLYRLQTPGTPLFRPVHYDNIQLDDFAMGTNAIVAVISYTG 748 Query 220 FNIEDALVMNKASVERALARSHFFRT-YEGEERRYPGGQEDRFEIPSQDVRGARGEEAYA 278 +++EDA+++NKA+ ER A ++T + +++ S R E Sbjct 749 YDMEDAMIINKAAYERGFAYGSIYKTKFLTLDKK-----------SSYFARHPHMPELIK 797 Query 279 HLDEDGLVNPETQVDENSVLLGKTSPPRFLEEPDDMGGLSPQKRRETSVTMRSGESGVVD 338 HLD DGL +P +++ S L G ++ K V M E +V+ Sbjct 798 HLDTDGLPHPGSKLSYGSPLYCYFD-----------GEVATYK----VVKMDEKEDCIVE 842 Query 339 TVTLMEGEDGS--KLSKVSVRDERIPELGDKFASRHGQKGVIGHLAPQEDMPFTEEGVVP 396 ++ + D S K+ +++R R +GDKFASR GQKG+ P ED+PFTE G++P Sbjct 843 SIRQLGSFDLSPKKMVAITLRVPRPATIGDKFASRAGQKGICSQKYPAEDLPFTESGLIP 902 Query 397 DLVVNPHALPSRMTVGHILEMIGGKLGSMEGRRVDGTPFLGEDEED----LRSGLEDVGF 452 D+V NPH PSRMT+ ++E + GK ++ G D TPF +E LE G+ Sbjct 903 DIVFNPHGFPSRMTIAMMIETMAGKGAAIHGNVYDATPFRFSEENTAIDYFGKMLEAGGY 962 Query 453 NSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAR 512 N G E +YSGV G ++ A+IF GV+ YQ+L HMV +K RS G V+ T QP +GR R Sbjct 963 NYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVFDKWQVRSTGAVEARTHQPIKGRKR 1022 Query 513 EGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIHICGNCG--MTATENVEQRRV--- 567 GG+R GEMERD I HGAA L++RL SD+ +C CG + + + +R Sbjct 1023 GGGVRFGEMERDALISHGAAFLLQDRLFHNSDKTHTLVCHKCGSILAPLQRIVKRNETGG 1082 Query 568 ------YCPNCGEETDIHEIEMSYAFKLLLDEMKALGIAPRLELED 607 C CG+ + + IE+ ++FK L+ E+ ++ I R +L + Sbjct 1083 LSSQPDTCRLCGDNSSVSMIEIPFSFKYLVTELSSVNINARFKLNE 1128 >RecName: Full=Probable DNA-directed RNA polymerase I subunit RPA2; AltName: Full=DNA-directed RNA polymerase I polypeptide 2; Short=RNA polymerase I subunit 2 [Schizosaccharomyces pombe 972h-] Sequence ID: Q9P7X8.2 Length: 1174 Range 1: 672 to 1093 Score:290 bits(743), Expect:9e-85, Method:Compositional matrix adjust., Identities:166/441(38%), Positives:239/441(54%), Gaps:30/441(6%) Query 126 THLEIDPQLIFGIGAGMIPYPEHNASPRITMGAGMVKQSLGLPAANYRIRPDTRQHLLHY 185 TH+E P + I A M P+ + N SPR M KQ++G P R R D + + L Sbjct 672 THVEYSPTNVLSIVANMTPFSDFNQSPRNMYQCQMGKQTMGTPGTALRYRTDNKLYRLQT 731 Query 186 PQLSMVKTQTTEQIGFDERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRT 245 Q +V+ + G D P N VVAV+SY G+++EDA+++NK++ ER + Sbjct 732 GQTPVVRPKLHNTYGLDHYPNGTNAVVAVISYTGYDMEDAMILNKSAHERGFG---YGTV 788 Query 246 YEGEERRYPGGQEDRFEIPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPP 305 Y+GE F++ SQ R RGE H G T E L P Sbjct 789 YKGES----------FDL-SQKRR--RGEPVVHHF---GFAPGSTPRREWLQKLDADGLP 832 Query 306 RF---LEEPDDMGGLSPQKRRETSV-TMRSGESGVVDTVTLMEGEDGSKLSK---VSVRD 358 LE+ D + + + + T E G VD V L+ + G + V +R Sbjct 833 FIGIKLEDGDPIVAYYDESTGQNFIETYHGTEPGFVDEVRLLGNDVGDSECQQIHVKLRI 892 Query 359 ERIPELGDKFASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMI 418 R P +GDKF+SRHGQKG+ P DMPFTE G+ PD+++NPHA PSRMT+G +E + Sbjct 893 TRSPIIGDKFSSRHGQKGICSQKWPTVDMPFTESGMQPDIIINPHAFPSRMTIGMFIESL 952 Query 419 GGKLGSMEGRRVDGTPFLGEDEED----LRSGLEDVGFNSAGKETMYSGVTGEKIEAEIF 474 GK G+ G D TPF+ +++ L G+N G E MYSG+TG++++A+I+ Sbjct 953 AGKAGACHGLAQDSTPFIYSEQQTAADYFGEQLVKAGYNYHGNEPMYSGITGQEMKADIY 1012 Query 475 VGVIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMT 534 +GV++YQ+L HMVS+K R+ GP+ LTRQP +GR R GG+R GEMERD IGHG + Sbjct 1013 IGVVYYQRLRHMVSDKFQVRTTGPIHNLTRQPVKGRKRAGGIRFGEMERDAVIGHGTSFL 1072 Query 535 LKERLLDESDREFIHICGNCG 555 +++RL++ SD +C +CG Sbjct 1073 MQDRLMNCSDYAQSWVCRDCG 1093 >RecName: Full=DNA-directed RNA polymerase I subunit RPA2; AltName: Full=DNA-directed RNA polymerase I polypeptide 2; Short=RNA polymerase I subunit 2 [Neurospora crassa OR74A] Sequence ID: O74633.2 Length: 1234 Range 1: 665 to 1166 Score:289 bits(740), Expect:3e-84, Method:Compositional matrix adjust., Identities:174/512(34%), Positives:272/512(53%), Gaps:41/512(8%) Query 102 EFIDAEEEEDIYVAVDEDD-LEEEHTHLEIDPQLIFGIGAGMIPYPEHNASPRITMGAGM 160 +F+ +E+ + +A E + + + TH+E DP I I A M P+ + N SPR M Sbjct 665 DFVGPQEQPYMSIACTEQEVIPGDSTHVEFDPTNILSILANMTPFSDFNQSPRNMYQCQM 724 Query 161 VKQSLGLPAANYRIRPDTRQHLLHYPQLSMVKTQTTEQIGFDERPAAQNFVVAVMSYEGF 220 KQ++G PA R D + + L Q +V+ GFD P N VVAV+SY G+ Sbjct 725 GKQTMGTPATALAHRTDNKMYRLQTGQTPVVRAPLHNTYGFDNFPNGMNAVVAVISYTGY 784 Query 221 NIEDALVMNKASVERALARSHFFRTY-----EGEERRYPGGQEDRFEI-PSQDVRGARGE 274 +++DA+++NK++ ER ++T + R F P+ +R E Sbjct 785 DMDDAMILNKSAHERGFGHGSIYKTKKVSLKDDSRTRSAKSIVKMFGFAPNSTIR----E 840 Query 275 EAYAHLDEDGLVNPETQVDENSVLLGK-TSPPRFLEEPDDMGGLSPQKRRETSVTMRSGE 333 LD DGL + E V+ T + + + G++ +R + S E Sbjct 841 STRDMLDNDGLPRVGRLLREGDVICAWHTVSADYNGQLVNRDGVTHYERYKDS------E 894 Query 334 SGVVDTVTLMEGEDGSK-LSKVSV--RDERIPELGDKFASRHGQKGVIGHLAPQEDMPFT 390 V+ V ++ ++G++ L VS+ R R P +GDKF+SRHGQKGV+ P DMPF+ Sbjct 895 DAFVEEVRVIGADNGTEPLQTVSIKLRIPRSPVIGDKFSSRHGQKGVLSQKWPATDMPFS 954 Query 391 EEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSMEGRRVDGTPFLGEDEED----LRSG 446 E G+ PD+++NPHA PSRMT+G +E + GK G++ G D TPF +++ Sbjct 955 ETGIQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGLAQDSTPFKFDEQNTAGDYFGHQ 1014 Query 447 LEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVSNKLHARSRGPVQVLTRQP 506 L G+N G E +YSG+TGE+ +A+I++GV++YQ+L HMV++K R+ GPV T QP Sbjct 1015 LMKAGYNYHGNEPLYSGITGEEFQADIYIGVVYYQRLRHMVNDKYQVRTTGPVVPTTGQP 1074 Query 507 TEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIHICGNCGM------TATE 560 +GR + GG+R+GEMERD + HG + L++RLL+ SD +C CG T + Sbjct 1075 IKGRKKGGGIRVGEMERDALLAHGTSFLLQDRLLNCSDYSKSWMCRQCGSFLSTQPTVSP 1134 Query 561 NVEQRR----VYCPNCG------EETDIHEIE 582 + +R+ V C NC E+ D+ +I+ Sbjct 1135 FIGKRKAVSTVRCRNCAVRLDDMEDVDLMQID 1166 >RecName: Full=DNA-directed RNA polymerase RPB2 homolog; Short=RPB2 homolog [African swine fever virus pig/Kenya/KEN-50/1950] Sequence ID: P0C8K2.1 Length: 1242 Range 1: 613 to 1228 Score:270 bits(691), Expect:2e-77, Method:Compositional matrix adjust., Identities:194/632(31%), Positives:292/632(46%), Gaps:56/632(8%) Query 8 AKVYVNGSLVGTHPDPHELAEQIREARRIGD-VSEMVNVSVKERTREVIINADAGRARRP 66 A+V++NG +G + ELA++ R RR G V + EV D GR RP Sbjct 613 ARVFINGEWIGCCTNAFELAQRYRMLRREGKIVHPHTTIYWDSMVDEVEFWLDVGRLTRP 672 Query 67 LLVVEDGEPRISEAEIEA-------------------------------LRDGDLEFDDL 95 LL+V++ + +EA +A + G L +DL Sbjct 673 LLIVDNNIEKYNEACYKAAEARKKGNKDWEKHKISFVQNTRFTSQMAKAILAGTLTLEDL 732 Query 96 VAHGYVEFIDAEEEEDIYVAVD-------EDDLEEEHTHLEIDPQLIFGIGAGMIPYPEH 148 VA G EFI EE E+ VA + D+ TH+++ PQ I G+ A + PY Sbjct 733 VAQGICEFITPEEAENCLVAFSITELRKHKHDVTRRFTHVDV-PQSILGLAALVSPYANC 791 Query 149 NASPRITMGAGMVKQSLGLPAANYRIRPDTRQHLLHYPQLSMVKTQTTEQIGFDERPAAQ 208 R+T +Q+ G ++ R D + Y ++ +VKT + P Sbjct 792 TQPARVTYETNQGRQTGGWYCFSWPYRVDMNRFFQFYNEMPLVKTIAHNYV----IPNGL 847 Query 209 NFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGEERRYPGGQEDRFEIPSQDV 268 N +VA M Y G+N ED+++++++ ++R F+R EE+ + F P + Sbjct 848 NTIVAYMIYGGYNQEDSVIVSQSFIDRGGFAGTFYR----EEKVELESDIESFGKPDPLI 903 Query 269 RGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPPRFLEEPDDMGGLSPQKRRETSVT 328 A DG V T V + +++GK + R E D++ K + SV Sbjct 904 TKNLKPGANYEKLVDGFVPVGTVVKKGDIIIGKVAKIR--GEKDELN-----KYIDRSVM 956 Query 329 MRSGESGVVDTVTLMEGEDGSKLSKVSVRDERIPELGDKFASRHGQKGVIGHLAPQEDMP 388 E VVD V G + + +R ER +GDK +SR G KG+ P DMP Sbjct 957 YGFDEPAVVDAVMRPHGPNDEIFGLMRLRYERNLNIGDKMSSRSGNKGIAALALPTSDMP 1016 Query 389 FTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSMEGRRVDGTPFLGEDEEDLRSGLE 448 FTE+G+ PDL+VNPH+ PSRMT G ++E G +++G DGT FL + + L L Sbjct 1017 FTEDGLQPDLIVNPHSHPSRMTNGQMIETTVGLANALQGVVTDGTAFLPINVQLLSERLA 1076 Query 449 DVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVSNKLHA-RSRGPVQVLTRQPT 507 G G + M++G TGE +A IF+G ++Q+L V + +A S GP LT QP Sbjct 1077 QEGLRFNGCQKMFNGQTGEYFDAAIFIGPTYHQRLQKFVLDDRYAVASYGPTDALTGQPL 1136 Query 508 EGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIHICGNCGMTATENVEQRRV 567 +G+ GGLR+GEME V GA T+ E+ D+SD +IC NCG A N Sbjct 1137 DGKRSHGGLRLGEMEHWVLTAQGAMQTIIEKSHDDSDGCISYICRNCGEPAIYNASHPIY 1196 Query 568 YCPNCGEETDIHEIEMSYAFKLLLDEMKALGI 599 C NC + DI ++ + + EM+A + Sbjct 1197 KCMNCDVQADISMVDSRRSSIVFQHEMRAANV 1228 >RecName: Full=DNA-directed RNA polymerase RPB2 homolog; Short=RPB2 homolog [African swine fever virus Malawi LIL 20/1] Sequence ID: P0C8K3.1 Length: 1242 Range 1: 613 to 1228 Score:270 bits(690), Expect:3e-77, Method:Compositional matrix adjust., Identities:195/632(31%), Positives:293/632(46%), Gaps:56/632(8%) Query 8 AKVYVNGSLVGTHPDPHELAEQIREARRIGD-VSEMVNVSVKERTREVIINADAGRARRP 66 A+V++NG +G + ELA++ R RR G V + EV D GR RP Sbjct 613 ARVFINGEWIGCCTNAFELAQRYRMLRREGKIVHPHTTIYWDSMVDEVEFWLDVGRLTRP 672 Query 67 LLVVEDGEPRISEA---EIEALRDGD----------------------------LEFDDL 95 LL+V++ + ++A EA + GD L +DL Sbjct 673 LLIVDNNIEKYNKACYKAAEARKKGDKDWEKHKIPFIQNTRFTSQMAKDILAGTLTLEDL 732 Query 96 VAHGYVEFIDAEEEEDIYVAVD-------EDDLEEEHTHLEIDPQLIFGIGAGMIPYPEH 148 VA G EFI EE E+ VA + D+ TH+++ PQ I G+ A + PY Sbjct 733 VAQGICEFITPEEAENCLVAFSITELRKHKHDVTRRFTHVDV-PQAILGLAALVSPYANC 791 Query 149 NASPRITMGAGMVKQSLGLPAANYRIRPDTRQHLLHYPQLSMVKTQTTEQIGFDERPAAQ 208 R+T +Q+ G ++ R D + Y ++ +VKT + P Sbjct 792 TQPARVTYETNQGRQTGGWYCFSWPYRVDMNRFFQFYNEMPLVKTIAHNYV----IPNGL 847 Query 209 NFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGEERRYPGGQEDRFEIPSQDV 268 N +VA M Y G+N ED+++++++ ++R F+R EE+ + F P + Sbjct 848 NTIVAYMIYGGYNQEDSVIVSQSFIDRGGFAGTFYR----EEKVELESDIESFGKPDPLI 903 Query 269 RGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPPRFLEEPDDMGGLSPQKRRETSVT 328 A DG V T V + +++GK + R E D++ K + SV Sbjct 904 TKNLKPGANYEKLVDGFVPVGTVVKKGDIIIGKVAKIR--GEKDELN-----KYIDRSVM 956 Query 329 MRSGESGVVDTVTLMEGEDGSKLSKVSVRDERIPELGDKFASRHGQKGVIGHLAPQEDMP 388 E VVD V G + + +R ER +GDK +SR G KG+ P DMP Sbjct 957 YGFDEPAVVDAVMRPHGPNDEIFGLMRLRYERNLNIGDKMSSRSGNKGIAALALPTSDMP 1016 Query 389 FTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSMEGRRVDGTPFLGEDEEDLRSGLE 448 FTE+G+ PDL+VNPH+ PSRMT G ++E G +++G DGT FL + + L L Sbjct 1017 FTEDGLQPDLIVNPHSHPSRMTNGQMIETTVGLANALQGVVTDGTAFLPINVQLLSERLA 1076 Query 449 DVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVSNKLHA-RSRGPVQVLTRQPT 507 G G + M++G TGE +A IF+G ++Q+L V + +A S GP LT QP Sbjct 1077 QEGLRFNGCQKMFNGQTGEYFDAAIFIGPTYHQRLQKFVLDDRYAVASYGPTDALTGQPL 1136 Query 508 EGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIHICGNCGMTATENVEQRRV 567 +G+ GGLR+GEME V GA T+ E+ D+SD +IC NCG A N Sbjct 1137 DGKRSHGGLRLGEMEHWVLTAQGAMQTIIEKSHDDSDGCISYICRNCGEPAIYNASHPIY 1196 Query 568 YCPNCGEETDIHEIEMSYAFKLLLDEMKALGI 599 C NC + DI ++ + + EM+A + Sbjct 1197 KCMNCDVQADISMVDSRRSSIVFQHEMRAANV 1228 >RecName: Full=DNA-directed RNA polymerase RPB2 homolog; Short=RPB2 homolog [African swine fever virus BA71V] Sequence ID: P42487.1 Length: 1242 Range 1: 613 to 1228 Score:269 bits(688), Expect:5e-77, Method:Compositional matrix adjust., Identities:195/632(31%), Positives:293/632(46%), Gaps:56/632(8%) Query 8 AKVYVNGSLVGTHPDPHELAEQIREARRIGD-VSEMVNVSVKERTREVIINADAGRARRP 66 A+V++NG +G + ELA++ R RR G V + EV D GR RP Sbjct 613 ARVFINGEWIGCCTNAFELAQRYRMFRREGKIVHPHTTIYWDSMVDEVEFWLDVGRLTRP 672 Query 67 LLVVEDGEPRISEA---EIEALRDGD----------------------------LEFDDL 95 LL+V++ + ++A EA + GD L +DL Sbjct 673 LLIVDNNIEKYNQACYKAAEARKKGDKDWEKHKIPFIQNTRFTSQMAKDILAGTLTLEDL 732 Query 96 VAHGYVEFIDAEEEEDIYVAVD-------EDDLEEEHTHLEIDPQLIFGIGAGMIPYPEH 148 VA G EFI EE E+ VA + D+ TH+++ PQ I G+ A + PY Sbjct 733 VAQGICEFITPEEAENCLVAFSIIELRKHKHDVTRRFTHVDV-PQAILGLAALVSPYANC 791 Query 149 NASPRITMGAGMVKQSLGLPAANYRIRPDTRQHLLHYPQLSMVKTQTTEQIGFDERPAAQ 208 R+T +Q+ G ++ R D + Y ++ +VKT + P Sbjct 792 TQPARVTYETNQGRQTGGWYCFSWPYRVDMNRFFQFYNEMPLVKTIAHNYV----IPNGL 847 Query 209 NFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGEERRYPGGQEDRFEIPSQDV 268 N +VA M Y G+N ED+++++++ ++R F+R EE+ + F P + Sbjct 848 NTIVAYMIYGGYNQEDSVIVSQSFIDRGGFAGTFYR----EEKVELESDIESFGKPDPLI 903 Query 269 RGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPPRFLEEPDDMGGLSPQKRRETSVT 328 A DG V T V + +++GK + R E D++ K + SV Sbjct 904 TKNLKPGANYEKLVDGFVPVGTVVKKGDIIIGKVAKIR--GEKDELN-----KYIDRSVM 956 Query 329 MRSGESGVVDTVTLMEGEDGSKLSKVSVRDERIPELGDKFASRHGQKGVIGHLAPQEDMP 388 E VVD V G + + +R ER +GDK +SR G KG+ P DMP Sbjct 957 YGFDEPAVVDAVMRPHGPNDEIFGLMRLRYERNLNIGDKMSSRSGNKGIAALALPTSDMP 1016 Query 389 FTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSMEGRRVDGTPFLGEDEEDLRSGLE 448 FTE+G+ PDL+VNPH+ PSRMT G ++E G +++G DGT FL + + L L Sbjct 1017 FTEDGLQPDLIVNPHSHPSRMTNGQMIETTVGLANALQGVVTDGTAFLPINVQLLSERLA 1076 Query 449 DVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVSNKLHA-RSRGPVQVLTRQPT 507 G G + M++G TGE +A IF+G ++Q+L V + +A S GP LT QP Sbjct 1077 QEGLRFNGCQKMFNGQTGEYFDAAIFIGPTYHQRLQKFVLDDRYAVASYGPTDALTGQPL 1136 Query 508 EGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIHICGNCGMTATENVEQRRV 567 +G+ GGLR+GEME V GA T+ E+ D+SD +IC NCG A N Sbjct 1137 DGKRSHGGLRLGEMEHWVLTAQGAMQTIIEKSHDDSDGCISYICRNCGEPAIYNASHPIY 1196 Query 568 YCPNCGEETDIHEIEMSYAFKLLLDEMKALGI 599 C NC + DI ++ + + EM+A + Sbjct 1197 KCMNCDVQADIGMVDSRRSSIVFQHEMRAANV 1228 >RecName: Full=DNA-directed RNA polymerase RPB2 homolog; Short=RPB2 homolog [African swine fever virus tick/South Africa/Pretoriuskop Pr4/1996] Sequence ID: P0C8K4.1 Length: 1242 >RecName: Full=DNA-directed RNA polymerase RPB2 homolog; Short=RPB2 homolog [African swine fever virus warthog/Namibia/Wart80/1980] Sequence ID: P0C8K5.1 Length: 1242 Range 1: 613 to 1228 Score:268 bits(686), Expect:8e-77, Method:Compositional matrix adjust., Identities:194/632(31%), Positives:293/632(46%), Gaps:56/632(8%) Query 8 AKVYVNGSLVGTHPDPHELAEQIREARRIGD-VSEMVNVSVKERTREVIINADAGRARRP 66 A+V++NG +G + ELA++ R RR G V + EV D GR RP Sbjct 613 ARVFINGEWIGCCTNAFELAQRYRMLRREGKIVHPHTTIYWDSMVDEVEFWLDVGRLTRP 672 Query 67 LLVVEDGEPRISEA---EIEALRDGD----------------------------LEFDDL 95 LL+V++ + ++A EA + GD L +DL Sbjct 673 LLIVDNNIEKYNQACYKAAEARKKGDKDWEKHKIPFVQNTRFTSQMAKDILAGTLTLEDL 732 Query 96 VAHGYVEFIDAEEEEDIYVAVD-------EDDLEEEHTHLEIDPQLIFGIGAGMIPYPEH 148 VA G EFI EE E+ VA + D+ TH+++ PQ I G+ A + PY Sbjct 733 VAQGICEFITPEEAENCLVAFSIIELRKHKHDVTRRFTHVDV-PQAILGLAALVSPYANC 791 Query 149 NASPRITMGAGMVKQSLGLPAANYRIRPDTRQHLLHYPQLSMVKTQTTEQIGFDERPAAQ 208 R+T +Q+ G ++ R D + Y ++ +VKT + P Sbjct 792 TQPARVTYETNQGRQTGGWYCFSWPYRVDMNRFFQFYNEMPLVKTIAHNYV----IPNGL 847 Query 209 NFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGEERRYPGGQEDRFEIPSQDV 268 N +VA M Y G+N ED+++++++ ++R F+R EE+ + F P + Sbjct 848 NTIVAYMIYGGYNQEDSVIVSQSFIDRGGFAGTFYR----EEKVELESDIESFGKPDPLI 903 Query 269 RGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPPRFLEEPDDMGGLSPQKRRETSVT 328 A DG V T V + +++GK + R E D++ K + SV Sbjct 904 TKNLKPGANYEKLVDGFVPVGTVVKKGDIIIGKVAKIR--GEKDELN-----KYIDRSVM 956 Query 329 MRSGESGVVDTVTLMEGEDGSKLSKVSVRDERIPELGDKFASRHGQKGVIGHLAPQEDMP 388 E VVD V G + + +R ER +GDK +SR G KG+ P DMP Sbjct 957 YGFDEPAVVDAVMRPHGPNDEIFGLMRLRYERNLNIGDKMSSRSGNKGIAALALPTSDMP 1016 Query 389 FTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSMEGRRVDGTPFLGEDEEDLRSGLE 448 FTE+G+ PDL+VNPH+ PSRMT G ++E G +++G DGT FL + + L L Sbjct 1017 FTEDGLQPDLIVNPHSHPSRMTNGQMIETTVGLANALQGVVTDGTAFLPINVQLLSERLA 1076 Query 449 DVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVSNKLHA-RSRGPVQVLTRQPT 507 G G + M++G TGE +A IF+G ++Q+L V + +A S GP LT QP Sbjct 1077 QEGLRFNGCQKMFNGQTGEYFDAAIFIGPTYHQRLQKFVLDDRYAVASYGPTDALTGQPL 1136 Query 508 EGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIHICGNCGMTATENVEQRRV 567 +G+ GGLR+GEME V GA T+ E+ D+SD ++C NCG A N Sbjct 1137 DGKRSHGGLRLGEMEHWVLTAQGAMQTIIEKSHDDSDGCISYVCRNCGEPAIYNASHPIY 1196 Query 568 YCPNCGEETDIHEIEMSYAFKLLLDEMKALGI 599 C NC + DI ++ + + EM+A + Sbjct 1197 KCMNCDVQADIGMVDSRRSSIVFQHEMRAANV 1228 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Clostridioides difficile 630] Sequence ID: Q18CF1.1 Length: 1238 Range 1: 770 to 1114 Score:214 bits(545), Expect:5e-58, Method:Compositional matrix adjust., Identities:128/353(36%), Positives:196/353(55%), Gaps:24/353(6%) Query 208 QNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGEERRYPGGQEDRFEIPSQD 267 +N ++A M++EG+N EDA+++N+ V+ + YE E R G E+ ++D Sbjct 770 RNCLIAFMTWEGYNYEDAILINERLVKEDRLSTIHIEEYECEARDTKLGPEE----ITRD 825 Query 268 VRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPP---------RFLEEPDDMGGLS 318 + G+ A +LD+ G++ +VD +L+GK +P R L + G Sbjct 826 IPNV-GDSAIKNLDDRGIIRIGAEVDSGDILVGKVTPKGETELTAEERLLRA---IFGEK 881 Query 319 PQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLS-------KVSVRDERIPELGDKFASR 371 ++ R+TS+ + GESG++ V + E+G LS + + +R ++GDK A R Sbjct 882 AREVRDTSLKVPHGESGIIVDVKVFTRENGDDLSPGVNELVRCYIAKKRKIKVGDKMAGR 941 Query 372 HGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSMEGRRVD 431 HG KGVI + P+EDMPF E G D+++NP +PSRM +G +LE+ G G V Sbjct 942 HGNKGVISRVLPEEDMPFMENGTPLDIILNPQGIPSRMNIGQVLEVHLGLAAKTLGWYVA 1001 Query 432 GTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVSNKL 491 + F G +E D+ LE+ G+ GK T+Y G TGE + I VG ++Y KL+H+V KL Sbjct 1002 TSVFDGANEYDIMDALEEAGYPRDGKLTLYDGRTGESFDNRITVGYMYYLKLHHLVDEKL 1061 Query 492 HARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESD 544 HARS GP ++T+QP G+A+ GG R GEME +GAA L+E L +SD Sbjct 1062 HARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAHILQEILTVKSD 1114 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Caldicellulosiruptor bescii DSM 6725] Sequence ID: B9MQG5.1 Length: 1228 Range 1: 638 to 1167 Score:214 bits(544), Expect:7e-58, Method:Compositional matrix adjust., Identities:164/554(30%), Positives:257/554(46%), Gaps:98/554(17%) Query 128 LEIDPQLIFGIGAGMIPYPEHNASPRITMGAGMVKQSLGL---------PAANYRIRPDT 178 ++I P+ I + +IP+ E++ + R MG+ M +Q++ L YR D+ Sbjct 638 IDISPKQIVSVSTSLIPFLENDDANRALMGSNMQRQAVPLLMTESPIIGTGVEYRAAVDS 697 Query 179 RQHLLHYPQ----------------------LSMVKTQTTEQ-IGFDERPAA-------- 207 +L ++K + T Q F++RP Sbjct 698 GVCILAKKDGVVENVSADEIVIRNNDGTKDVYHLLKFKRTNQGTCFNQRPIVRKGQEVKA 757 Query 208 ------------------QNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGE 249 +N +VA M +EG+N EDA+++++ V+ + S YE E Sbjct 758 GEVIADGPSTDHGELALGKNVLVAFMPWEGYNYEDAILISERLVKEDVYTSIHIEEYECE 817 Query 250 ERRYPGGQEDRFEIPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPP---- 305 R G E+ ++D+ GE+A LDE G++ +V +L+GK +P Sbjct 818 ARDTKLGPEE----ITRDIPNV-GEDAIKDLDERGIIRIGAEVKSGDILVGKVTPKGETE 872 Query 306 -----RFLEEPDDMGGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDG-------SKLSK 353 R L + G ++ R+TS+ + GE G+V V + + G ++L + Sbjct 873 LTAEERLLRA---IFGEKARETRDTSLRVPHGEGGIVVDVKVFSRDKGDELPPGVNQLVR 929 Query 354 VSVRDERIPELGDKFASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGH 413 V V +R +GDK A RHG KGVI + P EDMPF +G D+V+NP +PSRM +G Sbjct 930 VYVAQKRKISVGDKMAGRHGNKGVISRILPVEDMPFLPDGTPVDIVLNPLGVPSRMNIGQ 989 Query 414 ILEMIGGKLGSMEGRRVDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEI 473 ILE G G +V F G EED+ L+ G N GK +Y G TGE + E+ Sbjct 990 ILETHLGYAAKALGWKVATPVFDGAKEEDIEEALKLAGLNPTGKTILYDGRTGEPFDNEV 1049 Query 474 FVGVIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAM 533 VG ++ KL H+V +K+HARS GP ++T+QP G+A+ GG R GEME +GAA Sbjct 1050 TVGYMYMLKLVHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY 1109 Query 534 TLKERLLDESDREFIHICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDE 593 TL+E L +SD + + EN+ + P E +FK+L+ E Sbjct 1110 TLQELLTVKSDDVTGRVKTYEAIVKGENIPE-----PGIPE-----------SFKVLVKE 1153 Query 594 MKALGIAPRLELED 607 +++L + +L ED Sbjct 1154 LQSLCLDVKLLSED 1167 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Acholeplasma laidlawii PG-8A] Sequence ID: A9NEL7.1 Length: 1271 Range 1: 850 to 1247 Score:211 bits(538), Expect:4e-57, Method:Compositional matrix adjust., Identities:147/422(35%), Positives:224/422(53%), Gaps:40/422(9%) Query 203 ERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGEER---RYPGGQED 259 E +N VA M++EG+N EDA++M++ V+ + S YE E R + G +E Sbjct 850 ELALGRNVTVAFMTWEGYNYEDAVIMSEDLVKHDVYTSIHIDEYEIETRDLKQANGKEEI 909 Query 260 RFEIPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPPRFLE-EPDD----- 313 EIP+ G+EA LDE G++ P ++V E +L+GK +P E P + Sbjct 910 TREIPNV------GQEAIKFLDERGIIVPGSEVKEGDILVGKITPKGVFEPTPSEKLIHA 963 Query 314 MGGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLS-------KVSVRDERIPELGD 366 + G ++ R++S+ + G GVV +V ++G +L +V + +R GD Sbjct 964 VIGDKAKEYRDSSLRVPHGGGGVVQSVQYFSKKNGDQLPTGVNEQIRVYIAKKRKITEGD 1023 Query 367 KFASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSME 426 K A RHG KGVI + P+EDMP+ +G D+++NP +PSRM +G ILE+ G Sbjct 1024 KMAGRHGNKGVISKILPREDMPYLADGTYVDIMLNPLGVPSRMNIGQILEIHLGISAQKL 1083 Query 427 GRRVDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHM 486 G +V F G ++L + +E+ G GK T+Y G TGE I VGV++ KL HM Sbjct 1084 GIKVASPVFDGVTNDELGAIMEEAGIAPDGKTTLYDGRTGEPYNNRISVGVMYMIKLSHM 1143 Query 487 VSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDRE 546 V +KLHAR+ GP ++T+QP G+A+ GG R GEME +GAA TL+E L +SD Sbjct 1144 VDDKLHARNVGPYTLVTQQPMGGKAQNGGQRFGEMEVWALYAYGAAHTLQEMLTIKSD-- 1201 Query 547 FIHICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGIAPRLELE 606 + G + Y G+E I + + +F++L E++ALG+ +EL Sbjct 1202 --DMIG----------RNKVYYAITHGQE--IPKASIPESFRVLTRELQALGL--YVELI 1245 Query 607 DA 608 DA Sbjct 1246 DA 1247 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Candidatus Phytoplasma australiense] Sequence ID: B1VAM6.1 Length: 1240 Range 1: 823 to 1217 Score:211 bits(538), Expect:4e-57, Method:Compositional matrix adjust., Identities:140/417(34%), Positives:225/417(53%), Gaps:38/417(9%) Query 203 ERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGEER---RYPGGQED 259 E +N +VA M++EG+N EDA+++++ V+ + S Y + R + G +E Sbjct 823 ELALGRNILVAFMTWEGYNYEDAIIISEELVKNDVYTSVHINKYSVQTRELKKGSGKEEI 882 Query 260 RFEIPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPPRFLE-EPDD----- 313 E+P+ G +A +LDE G++ P ++V E +L+GK +P ++ P + Sbjct 883 TREVPNV------GADAIKNLDERGIIIPGSEVKEGDILVGKITPQGNVDPTPQEKLIQI 936 Query 314 MGGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLS-------KVSVRDERIPELGD 366 + G ++ +++S+ + GE G+V +V ++G L +V + +R GD Sbjct 937 VIGEKAREYKDSSLRVPYGEGGIVQSVQYFSRKNGDILPPGVNENIRVFIAKKRKISEGD 996 Query 367 KFASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSME 426 K A RHG KGVI + P+ED+PF E+G D+++NP +PSRM +G ILE+ G Sbjct 997 KMAGRHGNKGVISRILPKEDLPFMEDGTTIDVMLNPLGVPSRMNIGQILEIHLGMSAKNL 1056 Query 427 GRRVDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHM 486 +V F G +++DL+ ++ GK+ +Y G TGE E I VGV++ KL HM Sbjct 1057 NIKVATPVFDGVNDQDLKEISQEANLELDGKKVLYDGRTGEPYENRISVGVMYMIKLSHM 1116 Query 487 VSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDRE 546 V +KLHAR+ GP ++T+QP G+ REGG R GEME HGAA TL+E L +SD Sbjct 1117 VDDKLHARNVGPYTLVTQQPMRGKIREGGQRYGEMENWAVHAHGAAYTLQEFLTIKSD-- 1174 Query 547 FIHICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGIAPRL 603 I G T + V+ +++ PN E +F++L+ E++ALG+ L Sbjct 1175 --DIIGR-NQTYSAIVQGKQLPKPNIPE-----------SFRVLIKELQALGLYVEL 1217 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Caldicellulosiruptor saccharolyticus DSM 8903] Sequence ID: A4XI30.1 Length: 1229 Range 1: 638 to 1167 Score:210 bits(534), Expect:1e-56, Method:Compositional matrix adjust., Identities:164/555(30%), Positives:256/555(46%), Gaps:100/555(18%) Query 128 LEIDPQLIFGIGAGMIPYPEHNASPRITMGAGMVKQSLGL---------PAANYRIRPDT 178 ++I P+ I + +IP+ E++ + R MG+ M +Q++ L YR D+ Sbjct 638 VDISPKQIVSVSTSLIPFLENDDANRALMGSNMQRQAVPLLTTESPIIGTGVEYRAAVDS 697 Query 179 RQHLLHYPQ----------------------LSMVKTQTTEQ-IGFDERPAA-------- 207 +L ++K + T Q F++RP Sbjct 698 GVCVLAKKDGIVEKVSADEIVIQNHDGTKDVYHLLKFKRTNQGTCFNQRPIVRKGQEVKT 757 Query 208 ------------------QNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGE 249 +N +VA M +EG+N EDA+++++ V+ + S YE E Sbjct 758 GEVIADGPSTDHGELALGKNVLVAFMPWEGYNYEDAILISERLVKEDVYTSIHIEEYECE 817 Query 250 ERRYPGGQED-RFEIPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPP--- 305 R G E+ +IP+ GE+A LDE G++ +V +L+GK +P Sbjct 818 ARDTKLGPEEITRDIPNI------GEDAIKDLDERGIIRIGAEVKSGDILVGKVTPKGET 871 Query 306 ------RFLEEPDDMGGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDG-------SKLS 352 R L + G ++ R+TS+ + GE G+V V + + G ++L Sbjct 872 ELTAEERLLRA---IFGEKARETRDTSLRVPHGEGGIVVDVKVFSRDKGDELPPGVNQLV 928 Query 353 KVSVRDERIPELGDKFASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVG 412 +V V +R +GDK A RHG KGVI + P EDMPF +G D+V+NP +PSRM +G Sbjct 929 RVYVAQKRKISVGDKMAGRHGNKGVISRILPVEDMPFLPDGTPVDIVLNPLGVPSRMNIG 988 Query 413 HILEMIGGKLGSMEGRRVDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAE 472 ILE G G +V F G EED+ L G + GK +Y G TGE + E Sbjct 989 QILETHLGYAAKALGWKVATPVFDGAKEEDIEEALNLAGLSPNGKTILYDGRTGEPFDNE 1048 Query 473 IFVGVIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAA 532 + VG ++ KL H+V +K+HARS GP ++T+QP G+A+ GG R GEME +GAA Sbjct 1049 VTVGYMYMLKLVHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA 1108 Query 533 MTLKERLLDESDREFIHICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLD 592 TL+E L +SD + + EN+ + P E +FK+L+ Sbjct 1109 YTLQELLTVKSDDVTGRVKTYEAIVKGENIPE-----PGIPE-----------SFKVLVK 1152 Query 593 EMKALGIAPRLELED 607 E+++L + +L ED Sbjct 1153 ELQSLCLDVKLLSED 1167 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Staphylococcus carnosus subsp. carnosus TM300] Sequence ID: B9DKV0.1 Length: 1183 Range 1: 751 to 1148 Score:209 bits(533), Expect:2e-56, Method:Compositional matrix adjust., Identities:139/420(33%), Positives:220/420(52%), Gaps:37/420(8%) Query 203 ERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGEERRYP-GGQEDRF 261 E +N VV M+++G+N EDA++M++ V+ + S YE E R G +E Sbjct 751 EMALGRNVVVGFMTWDGYNYEDAVIMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITR 810 Query 262 EIPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPPRFLEEPDD------MG 315 +IP+ E A +LDE G+V +V + +L+GK +P E + + Sbjct 811 DIPNV------AESALKNLDERGIVYVGAEVKDGDILVGKVTPKGVTELTAEERLLHAIF 864 Query 316 GLSPQKRRETSVTMRSGESGVVDTVTLMEGEDG--------SKLSKVSVRDERIPELGDK 367 G ++ R+TS+ + G G+V V + EDG ++L +V + +R +GDK Sbjct 865 GEKAREVRDTSLRVPHGAGGIVLDVKVFNREDGDDSLSPGVNQLVRVYIVQKRKIHVGDK 924 Query 368 FASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSMEG 427 RHG KGVI + P+EDMP+ +G D+++NP +PSRM +G +LE+ G G Sbjct 925 MCGRHGNKGVISKIVPEEDMPYLPDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAAKNLG 984 Query 428 RRVDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMV 487 V F G +++D+ S +E+ G GK +Y G TGE + I VGV++ KL HMV Sbjct 985 IHVASPVFDGANDDDVWSTIEEAGMARDGKTVLYDGRTGEPFDNRISVGVMYMLKLAHMV 1044 Query 488 SNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREF 547 +KLHARS GP ++T+QP G+A+ GG R GEME +GAA TL+E L +SD Sbjct 1045 DDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDDTV 1104 Query 548 IHICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGIAPRLELED 607 + + EN+ + P+ E +F++L+ E+++LG+ ++ ED Sbjct 1105 GRVKTYEAIVKGENISK-----PSVPE-----------SFRVLMKELQSLGLDVKVMDED 1148 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Enterococcus faecium] Sequence ID: Q8GCR6.1 Length: 1208 Range 1: 604 to 1143 Score:208 bits(530), Expect:4e-56, Method:Compositional matrix adjust., Identities:165/568(29%), Positives:267/568(47%), Gaps:100/568(17%) Query 108 EEEDIYVAVDEDDLEEEHTHLEIDPQLIFGIGAGMIPYPEHNASPRITMGAGMVKQSLGL 167 + E++ V++D+ D ++++ P+ + + IP+ E++ S R MGA M +Q++ L Sbjct 604 QSENLEVSIDKVD------YMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPL 657 Query 168 --PAA-------NYRIRPDTRQHLL-------HYPQLSMVKTQ----------------T 195 P A Y+ D+ LL Y S ++ + + Sbjct 658 INPQAPWVGTGMEYKSAHDSGAALLCKHDGVVEYVDASEIRVRRDNGALDKYDVTKFRRS 717 Query 196 TEQIGFDERPAA--------------------------QNFVVAVMSYEGFNIEDALVMN 229 +++RP QN +V M++EG+N EDA++M+ Sbjct 718 NSGTSYNQRPIVHLGEKVEKGVTLADGPSMEQGEMALGQNVLVGFMTWEGYNYEDAIIMS 777 Query 230 KASVERALARSHFFRTYEGEERRYPGGQED-RFEIPSQDVRGARGEEAYAHLDEDGLVNP 288 + V+ + S YE E R G E+ EIP+ GE+A LDE G++ Sbjct 778 RRLVKDDVYTSIHIEEYESEARDTKLGPEEITREIPNV------GEDALKDLDEMGIIRI 831 Query 289 ETQVDENSVLLGKTSPPRFLEEPDD------MGGLSPQKRRETSVTMRSGESGVVDTVTL 342 +V + +L+GK +P E + + G ++ R+TS+ + G G+V V + Sbjct 832 GAEVQDGDLLVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDVKI 891 Query 343 MEGEDGSKLS-------KVSVRDERIPELGDKFASRHGQKGVIGHLAPQEDMPFTEEGVV 395 E G +LS +V + +R GDK A RHG KGV+ + P+EDMPF +G Sbjct 892 FTREAGDELSPGVNMLVRVYIVQKRKIHEGDKMAGRHGNKGVVSRIMPEEDMPFLPDGTP 951 Query 396 PDLVVNPHALPSRMTVGHILEMIGGKLGSMEGRRVDGTPFLGEDEEDLRSGLEDVGFNSA 455 D+++NP +PSRM +G +LE+ G G V F G +ED+ + + G S Sbjct 952 IDIMLNPLGVPSRMNIGQVLELHLGMAARQLGIHVATPVFDGASDEDVWETVREAGMASD 1011 Query 456 GKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGG 515 K +Y G TGE + + VGV++ KL HMV +KLHARS GP ++T+QP G+A+ GG Sbjct 1012 AKTVLYDGRTGEPFDGRVSVGVMYMIKLAHMVDDKLHARSIGPYSLVTQQPLGGKAQFGG 1071 Query 516 LRIGEMERDVFIGHGAAMTLKERLLDESDREFIHICGNCGMTATENVEQRRVYCPNCGEE 575 R GEME +GAA TL+E L +SD + G T V+ + P E Sbjct 1072 QRFGEMEVWALEAYGAAYTLQEILTYKSD----DVVGRV-KTYEAIVKGEPIPKPGVPE- 1125 Query 576 TDIHEIEMSYAFKLLLDEMKALGIAPRL 603 +F++L+ E+++LG+ R+ Sbjct 1126 ----------SFRVLVKELQSLGLDMRV 1143 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Lysinibacillus sphaericus C3-41] Sequence ID: B1HMZ6.1 Length: 1191 Range 1: 757 to 1145 Score:208 bits(529), Expect:6e-56, Method:Compositional matrix adjust., Identities:136/410(33%), Positives:217/410(52%), Gaps:34/410(8%) Query 203 ERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGEERRYPGGQEDRFE 262 E +N +VA M++ GFN EDA++M++ V+ + S YE E R G E+ Sbjct 757 ELALGRNVLVAFMTWNGFNYEDAVIMSERLVKDDVYTSVHIEEYESESRDTKLGPEE--- 813 Query 263 IPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPPRFLEEPDD------MGG 316 ++D+ GE+A +LDE G++ +V + +L+GK +P E + + G Sbjct 814 -ITRDIPNV-GEDALRNLDERGIIRIGAEVRDGDILVGKVTPKGVTELTAEERLLHAIFG 871 Query 317 LSPQKRRETSVTMRSGESGVVDTVTLMEGEDG-------SKLSKVSVRDERIPELGDKFA 369 ++ R+TS+ + G G++ V + EDG ++L + + +R +GDK A Sbjct 872 EKAREVRDTSLRVPHGAGGIILDVKVFNREDGDELPPGVNQLVRAYIVQKRKIRVGDKMA 931 Query 370 SRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSMEGRR 429 RHG KGVI + P+EDMPF +G D+++NP +PSRM +G +LE+ G G Sbjct 932 GRHGNKGVISRILPEEDMPFMPDGTPVDIMLNPLGVPSRMNIGQVLELHLGMASRYLGVH 991 Query 430 VDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVSN 489 + F G +EED+ +E+ G N GK +Y G +GE + + VG+++ KL HMV + Sbjct 992 MATPVFDGANEEDVWETMEEAGMNRDGKTILYDGRSGEPFDNRVSVGIMYMIKLAHMVDD 1051 Query 490 KLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIH 549 KLHARS GP ++T+QP G+A+ GG R GEME +GAA TL+E L +SD Sbjct 1052 KLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGR 1111 Query 550 ICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGI 599 + + E+V + P E +FK+L+ E+++LG+ Sbjct 1112 VKTYEAIVKGESVPE-----PGVPE-----------SFKVLIKELQSLGM 1145 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Exiguobacterium sp. AT1b] Sequence ID: C4KZQ4.1 Length: 1182 Range 1: 758 to 1145 Score:207 bits(528), Expect:6e-56, Method:Compositional matrix adjust., Identities:135/410(33%), Positives:221/410(53%), Gaps:36/410(8%) Query 208 QNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGEERRYPGGQED-RFEIPSQ 266 +N VVA M+++G+N EDA++M++ V+ + S YE E R G E+ +IP+ Sbjct 758 RNVVVAFMTWDGYNYEDAIIMSERLVKDDVYTSIHIEEYESESRDTKLGPEEITRDIPNV 817 Query 267 DVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPPRFLEEPDD------MGGLSPQ 320 G++A +LD+ G++ +V + +L+GK +P E + + G + Sbjct 818 ------GDDALRNLDDRGIIRIGAEVKDGDILVGKVTPKGVTELTAEERLLHAIFGEKAR 871 Query 321 KRRETSVTMRSGESGVVDTVTLMEGEDGSKLS-------KVSVRDERIPELGDKFASRHG 373 + R+TS+ + +G G++ V + + E+G +LS +V + +R GDK A RHG Sbjct 872 EVRDTSLRVPNGGDGIILDVKVFDRENGDELSPGVNQMVRVYIVQKRKIHEGDKMAGRHG 931 Query 374 QKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSMEGRRVDGT 433 KGVI + P+EDMP+ +G D+++NP +PSRM +G +LE+ G G +V Sbjct 932 NKGVISRILPEEDMPYMPDGTPVDIMLNPLGVPSRMNIGQVLELHLGMAAKKLGIKVATP 991 Query 434 PFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVSNKLHA 493 F G EED+ + +E+ G + K +Y G TGE + + VGV++ KL HMV +KLHA Sbjct 992 VFDGAREEDVWATIEEAGMDKDAKTRLYDGRTGEPFDNRVSVGVMYMIKLAHMVDDKLHA 1051 Query 494 RSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIHICGN 553 RS GP ++T+QP G+A+ GG R GEME +GAA TL+E L +SD + Sbjct 1052 RSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTIKSDDTVGRVKAY 1111 Query 554 CGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGIAPRL 603 + E+V P G + +F++L+ E++ALG+ ++ Sbjct 1112 EAIVKGESV-------PKAG---------VPESFRVLIKELQALGMEVKM 1145 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Geobacillus kaustophilus HTA426] Sequence ID: Q5L405.1 Length: 1190 Range 1: 752 to 1140 Score:207 bits(528), Expect:7e-56, Method:Compositional matrix adjust., Identities:137/410(33%), Positives:215/410(52%), Gaps:34/410(8%) Query 203 ERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGEERRYPGGQEDRFE 262 E +N +VA M+++G+N EDA++M++ V+ + S YE E R G E+ Sbjct 752 ELALGRNVLVAFMTWDGYNYEDAIIMSERLVKEDVYTSIHIEEYEAESRDTKLGPEE--- 808 Query 263 IPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPPRFLEEPDD------MGG 316 ++D+ GE+A +LDE G+V +V + +L+GK +P E + + G Sbjct 809 -ITRDIPNV-GEDALKNLDERGIVRIGAEVKDGDLLVGKVTPKGMTELTAEERLLHAIFG 866 Query 317 LSPQKRRETSVTMRSGESGVVDTVTLMEGEDG-------SKLSKVSVRDERIPELGDKFA 369 ++ R+TS+ + G G+V V + EDG ++L +V + +R GDK A Sbjct 867 EKAREVRDTSLRVPHGGGGIVLDVKVFNREDGDELPPGVNQLVRVYIVQKRKISEGDKMA 926 Query 370 SRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSMEGRR 429 RHG KGVI + P+EDMPF +G D+++NP +PSRM +G + E+ G G Sbjct 927 GRHGNKGVISRILPEEDMPFLPDGTPIDIMLNPLGVPSRMNIGQVFELHLGMAAKKLGLH 986 Query 430 VDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVSN 489 + F G EED+ + LE+ G K +Y G TGE + + VG+++ KL HMV + Sbjct 987 IASPVFDGATEEDVWNILEEAGLARDAKTVLYDGRTGEPFDNRVSVGIMYMIKLAHMVDD 1046 Query 490 KLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIH 549 KLHARS GP ++T+QP G+A+ GG R GEME +GAA TL+E L +SD Sbjct 1047 KLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGR 1106 Query 550 ICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGI 599 + + EN+ + P E +FK+L+ E+++LG+ Sbjct 1107 VKTYEAIVKGENIPE-----PGVPE-----------SFKVLIKELQSLGM 1140 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Halalkalibacterium halodurans C-125] Sequence ID: Q9Z9M2.1 Length: 1180 Range 1: 753 to 1145 Score:207 bits(528), Expect:7e-56, Method:Compositional matrix adjust., Identities:138/414(33%), Positives:217/414(52%), Gaps:34/414(8%) Query 203 ERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGEERRYPGGQEDRFE 262 E +N +V M++EG+N EDA+++++ V+ + S YE E R G E+ Sbjct 753 EMALGRNVLVGFMTWEGYNYEDAIILSERLVKDDVYTSIHIEEYESEARDTKLGPEE--- 809 Query 263 IPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPPRFLEEPDD------MGG 316 ++D+ GE+A +LDE G++ +V + +L+GK +P E + + G Sbjct 810 -ITRDIPNV-GEDALRNLDERGIIRVGAEVKDGDILVGKVTPKGVTELTAEERLLHAIFG 867 Query 317 LSPQKRRETSVTMRSGESGVVDTVTLMEGEDG-------SKLSKVSVRDERIPELGDKFA 369 ++ R+TS+ G G+V V + EDG ++L +V + +R GDK A Sbjct 868 EKAREVRDTSLRAPHGGDGIVLDVKIFNREDGDELPPGVNQLVRVYIVQKRKIHEGDKMA 927 Query 370 SRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSMEGRR 429 RHG KGVI + P+EDMP+ +G D+++NP +PSRM +G +LE+ G G Sbjct 928 GRHGNKGVISRILPEEDMPYLPDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARRLGLH 987 Query 430 VDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVSN 489 V F G EED+ + LE+ G GK +Y G TGE + + VG+++ KL HMV + Sbjct 988 VASPVFDGASEEDVWATLEEAGMARDGKTILYDGRTGEPFDNRVSVGIMYMIKLAHMVDD 1047 Query 490 KLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIH 549 KLHARS GP ++T+QP G+A+ GG R GEME +GAA TL+E L +SD Sbjct 1048 KLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGR 1107 Query 550 ICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGIAPRL 603 + + ENV + P E +FK+L+ E+++LG+ ++ Sbjct 1108 VKTYEAIVKGENVPE-----PGVPE-----------SFKVLIKELQSLGMDVKM 1145 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Shouchella clausii KSM-K16] Sequence ID: Q5WLS0.1 Length: 1180 Range 1: 753 to 1145 Score:207 bits(527), Expect:9e-56, Method:Compositional matrix adjust., Identities:138/414(33%), Positives:217/414(52%), Gaps:34/414(8%) Query 203 ERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGEERRYPGGQEDRFE 262 E +N +VA M+++G+N EDA+++++ V+ + S YE + R G E+ Sbjct 753 EMALGRNVLVAFMTWDGYNYEDAIILSERLVKDDVYTSIHIEEYESDARDTKLGPEE--- 809 Query 263 IPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPPRFLEEPDD------MGG 316 ++D+ GE+A +LDE G++ +V + +L+GK +P E + + G Sbjct 810 -ITRDIPNV-GEDALRNLDERGIIRIGAEVKDGDILVGKVTPKGVTELTAEERLLHAIFG 867 Query 317 LSPQKRRETSVTMRSGESGVVDTVTLMEGEDG-------SKLSKVSVRDERIPELGDKFA 369 ++ R+TS+ G G+V V + EDG ++L +V + +R GDK A Sbjct 868 EKAREVRDTSLRAPHGGDGIVLDVKIFNREDGDELPPGVNQLVRVYIVQKRKINQGDKMA 927 Query 370 SRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSMEGRR 429 RHG KGVI + P+EDMPF +G D+++NP +PSRM +G +LE+ G G Sbjct 928 GRHGNKGVISRILPEEDMPFLPDGTPVDIMLNPLGVPSRMNIGQVLELHLGMAARKLGIH 987 Query 430 VDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVSN 489 V F G EED+ LE+ G GK +Y G TGE + + VG+++ KL HMV + Sbjct 988 VASPVFDGASEEDVWGTLEEAGMARDGKTILYDGRTGEPFDNRVSVGIMYMIKLAHMVDD 1047 Query 490 KLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIH 549 KLHARS GP ++T+QP G+A+ GG R GEME +GAA TL+E L +SD Sbjct 1048 KLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGR 1107 Query 550 ICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGIAPRL 603 + + ENV + P E +FK+L+ E+++LG+ ++ Sbjct 1108 VKTYEAIVKGENVPE-----PGVPE-----------SFKVLIKELQSLGMDVKM 1145 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Geobacillus thermodenitrificans NG80-2] Sequence ID: A4IJI1.1 Length: 1190 Range 1: 752 to 1140 Score:207 bits(526), Expect:1e-55, Method:Compositional matrix adjust., Identities:137/410(33%), Positives:215/410(52%), Gaps:34/410(8%) Query 203 ERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGEERRYPGGQEDRFE 262 E +N +VA M+++G+N EDA++M++ V+ + S YE E R G E+ Sbjct 752 ELALGRNVLVAFMTWDGYNYEDAIIMSERLVKEDVYTSIHIEEYEAESRDTKLGPEE--- 808 Query 263 IPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPPRFLEEPDD------MGG 316 ++D+ GE+A +LDE G+V +V + +L+GK +P E + + G Sbjct 809 -ITRDIPNV-GEDALKNLDERGIVRIGAEVKDGDLLVGKVTPKGMTELTAEERLLHAIFG 866 Query 317 LSPQKRRETSVTMRSGESGVVDTVTLMEGEDG-------SKLSKVSVRDERIPELGDKFA 369 ++ R+TS+ + G G+V V + EDG ++L +V + +R GDK A Sbjct 867 EKAREVRDTSLRVPHGGGGIVLDVKVFNREDGDELPPGVNQLVRVYIVQKRKISEGDKMA 926 Query 370 SRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSMEGRR 429 RHG KGVI + P+EDMPF +G D+++NP +PSRM +G + E+ G G Sbjct 927 GRHGNKGVISRILPEEDMPFLPDGTPIDIMLNPLGVPSRMNIGQVFELHLGMAAKKLGLH 986 Query 430 VDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVSN 489 + F G EED+ + LE+ G K +Y G TGE + + VG+++ KL HMV + Sbjct 987 IASPVFDGATEEDVWNILEEAGMARDAKTVLYDGRTGEPFDNRVSVGIMYMIKLAHMVDD 1046 Query 490 KLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIH 549 KLHARS GP ++T+QP G+A+ GG R GEME +GAA TL+E L +SD Sbjct 1047 KLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGR 1106 Query 550 ICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGI 599 + + EN+ + P E +FK+L+ E+++LG+ Sbjct 1107 VKTYEAIVKGENIPE-----PGVPE-----------SFKVLIKELQSLGM 1140 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Acetivibrio thermocellus ATCC 27405] Sequence ID: A3DIZ4.1 Length: 1250 Range 1: 771 to 1154 Score:206 bits(525), Expect:2e-55, Method:Compositional matrix adjust., Identities:140/409(34%), Positives:210/409(51%), Gaps:42/409(10%) Query 208 QNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGEERRYPGGQED-RFEIPSQ 266 +N +V M++EG+N EDA+++++ V+ + S YE E R G ED EIP+ Sbjct 771 KNVLVGFMTWEGYNYEDAILISERLVKDDVFTSIHIEEYEAEARDTKLGPEDITREIPNV 830 Query 267 DVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPP---------RFLEEPDDMGGL 317 E+A L+ +G++ +V +L+GK +P R L + G Sbjct 831 ------SEDALKDLNSEGIIRIGAEVRAGDILVGKVTPKGETELTAEERLLRA---IFGE 881 Query 318 SPQKRRETSVTMRSGESGVVDTVTLMEGEDG-------SKLSKVSVRDERIPELGDKFAS 370 ++ R+TS+ + GESG+V V + E+G +KL +V V +R +GDK A Sbjct 882 KAREVRDTSLRVPHGESGIVVDVKIFTRENGDELAPGVNKLVRVYVAQKRKISVGDKMAG 941 Query 371 RHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSMEGRRV 430 RHG KGVI + P EDMPF +G D+V+NP +PSRM +G +LE+ G G +V Sbjct 942 RHGNKGVISRILPVEDMPFLPDGTPLDIVLNPLGVPSRMNIGQVLEVHLGYAAKALGWKV 1001 Query 431 DGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVSNK 490 F G EED+ L G GK +Y G TGE E + VG ++ KL H+V +K Sbjct 1002 ATPVFDGATEEDIVQTLRKAGLAEDGKSILYDGRTGEPFENRVTVGYMYMLKLAHLVDDK 1061 Query 491 LHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIHI 550 +HARS GP ++T+QP G+A+ GG R GEME +GAA TL+E L +SD + Sbjct 1062 IHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRV 1121 Query 551 CGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGI 599 + ENV + + P C FK+L+ E+++L + Sbjct 1122 KTYEAIVKGENVPEPGI--PEC--------------FKVLIKELQSLCL 1154 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Pediococcus pentosaceus ATCC 25745] Sequence ID: Q03EA9.1 Length: 1202 Range 1: 754 to 1137 Score:206 bits(525), Expect:2e-55, Method:Compositional matrix adjust., Identities:136/406(33%), Positives:216/406(53%), Gaps:36/406(8%) Query 208 QNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGEERRYPGGQEDRF-EIPSQ 266 QN ++A M+++G+N EDA+ +N+ V + S YE E R G E+ EIP+ Sbjct 754 QNPLIAFMTWQGYNFEDAIAINERLVRDDVYTSIHIEEYESEARDTKLGPEEMTREIPNI 813 Query 267 DVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPPRFLEEPDD------MGGLSPQ 320 GE+A +LD+DG+V +V++ +L+GK +P E + + G + Sbjct 814 ------GEDALRNLDQDGIVRVGAEVEDGDILVGKVTPKGVTELSAEERLLHAIFGEKAR 867 Query 321 KRRETSVTMRSGESGVVDTVTLMEGEDGSKLS-------KVSVRDERIPELGDKFASRHG 373 + R+TS+ + G G+V V + E+G +LS +V + +R ++GDK A RHG Sbjct 868 EVRDTSLRVPHGGGGIVQDVKIFTRENGDELSPGVNMMVRVYIAQKRKLQVGDKMAGRHG 927 Query 374 QKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSMEGRRVDGT 433 KG + + PQEDMP+ +G D++++P +PSRM +G +LE+ G G + Sbjct 928 NKGTVSVVIPQEDMPYMPDGTPIDIMLSPMGVPSRMNIGQVLELHLGMAARNLGIHMTTP 987 Query 434 PFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVSNKLHA 493 F G ++D+ + + G +S K +Y G TGE E + VGV+ Y KL HMV +K+HA Sbjct 988 VFDGAQDKDIWEAVAEAGMDSDAKSVLYDGRTGEPFEQRVAVGVMHYMKLAHMVDDKIHA 1047 Query 494 RSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIHICGN 553 RS GP ++T+QP G+A+ GG R GEME +GAA TL+E L +SD + G Sbjct 1048 RSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSD----DVVGR 1103 Query 554 CGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGI 599 T V+ + P E +F++L+ E++ALG+ Sbjct 1104 VK-TYEAIVKGEPIPRPGVPE-----------SFRVLVKELQALGL 1137 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Alkaliphilus oremlandii OhILAs] Sequence ID: A8MLD2.1 Length: 1241 Range 1: 772 to 1155 Score:206 bits(524), Expect:2e-55, Method:Compositional matrix adjust., Identities:136/408(33%), Positives:216/408(52%), Gaps:40/408(9%) Query 208 QNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGEERRYPGGQEDRFEIPSQD 267 +N ++ M++EG+N EDA+++N+ V+ S YE E R G E+ ++D Sbjct 772 RNCLIGFMTWEGYNYEDAILINEKLVKEDSLTSIHIEEYEAEARDTKLGPEE----ITRD 827 Query 268 VRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPP---------RFLEEPDDMGGLS 318 + GEEA LDE G++ +V +L+GK +P R L + G Sbjct 828 IPNV-GEEALKDLDERGIIRIGAEVQSGDILVGKVTPKGETELTAEERLLRA---IFGEK 883 Query 319 PQKRRETSVTMRSGESGVVDTVTLMEGEDG-------SKLSKVSVRDERIPELGDKFASR 371 ++ R+TS+ + GESG++ + + E+G ++L + + +R +GDK A R Sbjct 884 AREVRDTSLKVPHGESGIIVDIKVFSRENGDELPPGVNELVRAYIAQKRKINVGDKMAGR 943 Query 372 HGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSMEGRRVD 431 HG KGVI + P EDMPF +G ++V+NP +PSRM +G +LE+ G G V Sbjct 944 HGNKGVISRVLPAEDMPFLADGTPLEIVLNPLGVPSRMNIGQVLEVHLGLAAKSLGWNVA 1003 Query 432 GTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVSNKL 491 F G +E D+ LE GF+ +GK +Y G TGE + ++ VG ++ KL+H+V +K+ Sbjct 1004 TPVFDGANEHDIMDALEMAGFSRSGKVKLYDGRTGEPFDNDVTVGYMYMLKLHHLVDDKI 1063 Query 492 HARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIHIC 551 HARS GP ++T+QP G+A+ GG R GEME +GAA TL+E L +SD + Sbjct 1064 HARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEILTVKSD----DVV 1119 Query 552 GNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGI 599 G + C GE +I E + +FK+L+ E+++L + Sbjct 1120 GRV----------KTYECIVKGE--NIPEPGVPESFKVLIKELQSLCL 1155 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Ligilactobacillus salivarius UCC118] Sequence ID: Q1WVA5.1 Length: 1199 Range 1: 753 to 1141 Score:206 bits(523), Expect:3e-55, Method:Compositional matrix adjust., Identities:138/411(34%), Positives:217/411(52%), Gaps:36/411(8%) Query 203 ERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGEERRYPGGQED-RF 261 E QN ++A M+++G+N EDA+ +N+ V+ + S +E E R G E+ Sbjct 753 ELALGQNPLIAFMTWDGYNFEDAIAINERLVKEDVYTSIHIEEHESEARDTKLGPEEITR 812 Query 262 EIPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPPRFLEEPDD------MG 315 EIP+ GE+A +LDE G++ +V + +L+GK +P E + + Sbjct 813 EIPNV------GEDALKNLDEFGIIRIGAEVKDGDILVGKVTPKGVTELSAEERLLHAIF 866 Query 316 GLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLS-------KVSVRDERIPELGDKF 368 G ++ R+TS+ + G G+V V + E G +LS +V + +R ++GDK Sbjct 867 GEKAREVRDTSLRVPHGAGGIVQDVKIFTREGGDELSPGVNMMVRVYIAQKRKLQVGDKM 926 Query 369 ASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSMEGR 428 A RHG KG + + P+EDMPF +G D++++P +PSRM +G +L++ G G Sbjct 927 AGRHGNKGTVSVVIPEEDMPFMPDGTPIDIMLSPMGVPSRMNIGQVLDLHLGMAARKLGI 986 Query 429 RVDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVS 488 V F G +ED+ S L++ G GK +Y G TGE + I VGV++Y KL HMV Sbjct 987 HVASPVFDGARDEDIWSALQEAGLPGDGKTVLYDGRTGEAFDNRIAVGVMYYLKLAHMVD 1046 Query 489 NKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFI 548 +K+HARS GP ++T+QP G+A+ GG R GEME +GAA TL+E L +SD Sbjct 1047 DKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSD---- 1102 Query 549 HICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGI 599 + G T V+ + P E +F++L+ E++ALG+ Sbjct 1103 DVVGRVK-TYEAIVKGEPIPKPGVPE-----------SFRVLVKELQALGM 1141 >RecName: Full=DNA-directed RNA polymerase 132 kDa polypeptide [Fowlpox virus strain NVSL] Sequence ID: Q9J544.1 Length: 1161 Range 1: 561 to 1136 Score:206 bits(523), Expect:3e-55, Method:Compositional matrix adjust., Identities:170/609(28%), Positives:286/609(46%), Gaps:80/609(13%) Query 46 SVKERTREVIINADAGRARRPLLVVEDGEPRISEA--EIEALRDGDLEFDDLVAH--GYV 101 +VK+ E+ IN +GR RP LVV GE + E+E R + F D+ + Sbjct 561 NVKDHMNEIRINIGSGRLIRPFLVVYKGELVMDTIGEELEK-RIDTITFSDIQKEYPHVI 619 Query 102 EFIDAEEEEDIYVAVDE---------DDLEEEHTHLEIDPQLIFGIGAGMIPYPEHNASP 152 E +D E+ ++ V E D+ ++ + + + + G A + HN+ P Sbjct 620 EMLDLEQF--VFSNVCESVSKFRELSDEDKKLYDYCDFPNEFRDGYVASTLVGINHNSGP 677 Query 153 RITMGAGMVKQSLGLPAANYRIRPDTRQHLLHYPQLSMVKTQTTEQIGFDERPAAQNFVV 212 R +G KQ++ +++ R + D HLL YP+ +V ++ TE Q+ +V Sbjct 678 RAILGCAQAKQAISCLSSDLRNKIDNGIHLL-YPERPIVLSKATETSKIAINCFGQHVLV 736 Query 213 AVMSYEGFNIEDALVMNKASVER-----ALARSHFFRTYEGEERRYPGGQEDRFEIPSQD 267 A+MSY+G N ED +V+ + +ER A+ H + EIP ++ Sbjct 737 ALMSYKGMNQEDGIVVKREFIERGGLDIVTAKKH------------------QVEIPIEN 778 Query 268 VRGAR--GEEAYAHLDEDGLVNPETQVDENSVLLGKTSPPRFLEE---PDDMGGLSPQKR 322 + AY+ LD +GLV ++ + K R L++ D+ ++ Sbjct 779 FKNRERINSTAYSKLDINGLVRLNAFLEPGDAI-AKNISSRTLDDDFVADNQISFDISEK 837 Query 323 RETSVTMRSGESGVVDTVTLMEGEDGSKLSKVSVRDERIPELGDKFASRHGQKGVIGHLA 382 T + M E VD D K+ ++++ ER P +GDKF SR QKG I ++A Sbjct 838 Y-TDMYMSRVERVQVDLT------DKVKVRVLTMK-ERRPIMGDKFTSRTSQKGTIAYIA 889 Query 383 PQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSMEGRRVDG----TPFLGE 438 + ++P+ + GV PD+++N ++ SR T+ ++EMI S++ +G F Sbjct 890 SESELPYDKNGVTPDIIINSTSIYSRKTISMLIEMILTSAYSVKPYNNNGKNRPICFPSS 949 Query 439 DEEDL-----------RSGLEDVGFNSAGKET-----MYSGVTGEKIEAEIFVGVIFYQK 482 +E D+ +S + D+ + E +Y T + + ++F+G ++Y + Sbjct 950 NETDIEYYIEFARKCYQSAIPDLDKDELENEVYCESILYDPETDKPYKTKVFMGPLYYLR 1009 Query 483 LYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLD- 541 L H+ +K R RG L RQ EGR R GG++ GEMERD I HGAA T+ E L D Sbjct 1010 LRHLTQDKATVRCRGKKTKLIRQANEGRKRGGGIKFGEMERDCLIAHGAANTITEILKDS 1069 Query 542 ESDREFIHICGNCGMTATENVEQRRVYCPNCGE---ETDIHEIEMSYAFKLLLDEMKALG 598 E D + +++C NCG AT+ + VYC C + T + +I+ ++ K+ L +M A G Sbjct 1070 EEDYQDVYVCENCGDIATK--KNNNVYCIRCTKLNLYTVLTKIDTTHVSKVFLTQMNARG 1127 Query 599 IAPRLELED 607 I L + Sbjct 1128 IKINLTFNE 1136 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Macrococcoides caseolyticum JCSC5402] Sequence ID: B9E8Q5.1 Length: 1180 Range 1: 751 to 1139 Score:205 bits(522), Expect:4e-55, Method:Compositional matrix adjust., Identities:134/410(33%), Positives:215/410(52%), Gaps:34/410(8%) Query 203 ERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGEERRYPGGQEDRFE 262 E +N VV M+++G+N EDA++M++ V+ + S YE E R G E+ Sbjct 751 EMALGRNVVVGFMTWDGYNYEDAVIMSERLVKDDVYTSIHIEEYESEARDTKLGPEE--- 807 Query 263 IPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPPRFLEEPDD------MGG 316 ++D+ + A +LD+ G++ +V + +L+GK +P E + + G Sbjct 808 -ITRDIPNV-SDNALKNLDDRGIIFVGAEVRDGDILVGKVTPKGVTELTAEERLLHAIFG 865 Query 317 LSPQKRRETSVTMRSGESGVVDTVTLMEGEDG-------SKLSKVSVRDERIPELGDKFA 369 ++ R+TS+ + G G+V V + EDG ++L +V + +R +GDK Sbjct 866 EKAREVRDTSLRVPHGADGIVLDVKVFNREDGDELPPGVNQLVRVYIVQKRKIHVGDKMC 925 Query 370 SRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSMEGRR 429 RHG KGVI + P+EDMPF +G D+++NP +PSRM +G +LE+ G G Sbjct 926 GRHGNKGVISRILPEEDMPFMPDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAAKNLGLH 985 Query 430 VDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVSN 489 V F G ++ED+ S +E+ G GK +Y G TGE + + VGV++ KL HMV + Sbjct 986 VASPVFDGANDEDVWSTIEEAGMARDGKTVLYDGRTGEPFDNRVSVGVMYMLKLAHMVDD 1045 Query 490 KLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIH 549 KLHARS GP ++T+QP G+A+ GG R GEME +GAA TL+E L +SD Sbjct 1046 KLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDDTVGR 1105 Query 550 ICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGI 599 + + EN+ + P E +F++L+ E+++LG+ Sbjct 1106 VKTYEAIVKGENIPR-----PGVPE-----------SFRVLMKELQSLGL 1139 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Enterococcus faecalis V583] Sequence ID: Q82Z40.1 Length: 1207 Range 1: 751 to 1149 Score:205 bits(522), Expect:4e-55, Method:Compositional matrix adjust., Identities:145/421(34%), Positives:220/421(52%), Gaps:37/421(8%) Query 203 ERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGEERRYPGGQED-RF 261 E QN +VA M++EG+N EDA++M++ V+ + S YE E R G E+ Sbjct 751 EMALGQNVLVAFMTWEGYNYEDAIIMSRRLVKDDVYTSVHIEEYESEARDTKLGPEEITR 810 Query 262 EIPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPPRFLEEPDD------MG 315 EIP+ GE+A LDE G++ +V + +L+GK +P E + + Sbjct 811 EIPNV------GEDALKDLDEMGIIRIGAEVQDGDLLVGKVTPKGVTELSAEERLLHAIF 864 Query 316 GLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLS-------KVSVRDERIPELGDKF 368 G ++ R+TS+ + G G+V V + E G +LS +V + +R GDK Sbjct 865 GEKAREVRDTSLRVPHGGGGIVHDVKIFTREAGDELSPGVNMLVRVYIVQKRKIHEGDKM 924 Query 369 ASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSMEGR 428 A RHG KGV+ + P+EDMPF +G D+++NP +PSRM +G +LE+ G G Sbjct 925 AGRHGNKGVVSRIMPEEDMPFLPDGTPVDIMLNPLGVPSRMNIGQVLELHLGMAARQLGI 984 Query 429 RVDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVS 488 V F G +ED+ + + G S K +Y G TGE + I VGV++ KL HMV Sbjct 985 HVATPVFDGATDEDVWETVREAGMASDAKTVLYDGRTGEPFDNRISVGVMYMIKLAHMVD 1044 Query 489 NKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFI 548 +KLHARS GP ++T+QP G+A+ GG R GEME +GAA TL+E L +SD Sbjct 1045 DKLHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSD---- 1100 Query 549 HICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGIAPR-LELED 607 + G T V+ + P E +F++L+ E+++LG+ R L++E+ Sbjct 1101 DVVGRVK-TYEAIVKGEPIPKPGVPE-----------SFRVLVKELQSLGLDMRVLDIEE 1148 Query 608 A 608 A Sbjct 1149 A 1149 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Symbiobacterium thermophilum IAM 14863] Sequence ID: Q67JT3.1 Length: 1250 Range 1: 583 to 1105 Score:205 bits(522), Expect:5e-55, Method:Compositional matrix adjust., Identities:156/548(28%), Positives:254/548(46%), Gaps:100/548(18%) Query 127 HLEIDPQLIFGIGAGMIPYPEHNASPRITMGAGMVKQSLGL---------PAANYR---- 173 ++++ P+ + I +IP+ E++ + R MG+ M +Q++ L YR Sbjct 583 YMDVSPKQVVSIATALIPFLENDDASRALMGSNMQRQAVPLLRTEAPYVGTGMEYRSAWD 642 Query 174 -------------IRPDTRQHLLHYPQLSMVK------TQTTEQIGFDERPAAQ------ 208 +R + ++ Y + + K T++ + +++P + Sbjct 643 SGVCVIAENDGVVLRATASEVVVQYDDMQVKKYKLTKFTRSNQGTCMNQKPIVRAGDRVR 702 Query 209 --------------------NFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEG 248 N +VA M YEG+N EDA+++N+ V + S +E Sbjct 703 KGDVIADGPSTDQGELALGRNVLVAYMCYEGYNYEDAIIINERLVREDVFTSIHIEEHEC 762 Query 249 EERRYPGGQED-RFEIPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPP-- 305 E R G E+ +IP+ GE+ LDE G++ +V +L+GK +P Sbjct 763 EARDTKLGPEEITRDIPNV------GEDVLKDLDERGIIRIGAEVRPGDILVGKVTPKGE 816 Query 306 -------RFLEEPDDMGGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLS------ 352 R L + G ++ R+TS+ + GESG+V V + E+G +LS Sbjct 817 TELTAEERLLRA---IFGEKAREVRDTSLRVPHGESGIVVDVKVFTRENGDELSPGVNEL 873 Query 353 -KVSVRDERIPELGDKFASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTV 411 +V + +R GDK A RHG KGVI + P+EDMPF +G D+++ P +PSRM + Sbjct 874 VRVYMAQKRKISQGDKMAGRHGNKGVISVIVPEEDMPFMPDGTPIDIILTPLGVPSRMNI 933 Query 412 GHILEMIGGKLGSMEGRRVDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEA 471 G I+E+ G G V F G +E+D+R L GK +Y G TGE + Sbjct 934 GQIMEIHLGWAAKTLGMYVASPVFDGANEQDIREMLLKAHLPPNGKTVLYDGKTGEPFDN 993 Query 472 EIFVGVIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGA 531 E+ VG + KL+H+V +K+HARS GP ++T+QP G+A+ GG R GEME +GA Sbjct 994 EVTVGYKYMLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA 1053 Query 532 AMTLKERLLDESDREFIHICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLL 591 A TL+E L +SD + + ENV + P E +FK+L+ Sbjct 1054 AYTLQELLTVKSDDVVGRVKTYEAIVKGENVPE-----PGVPE-----------SFKVLI 1097 Query 592 DEMKALGI 599 E+++L + Sbjct 1098 KELQSLAL 1105 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Carboxydothermus hydrogenoformans Z-2901] Sequence ID: Q3A9Q7.1 Length: 1132 Range 1: 546 to 1067 Score:205 bits(521), Expect:5e-55, Method:Compositional matrix adjust., Identities:157/546(29%), Positives:252/546(46%), Gaps:98/546(17%) Query 128 LEIDPQLIFGIGAGMIPYPEHNASPRITMGAGMVKQSLGL-------------------- 167 +++ P+ +F + +IP+ EH+ + R MGA M +Q++ L Sbjct 546 VDVSPKQVFSVATSLIPFLEHDDANRALMGANMQRQAVPLIRTEAPVVGTGIEYKAAKDS 605 Query 168 --------PAANYRIRPD---TRQHLLHYPQLSMVKTQTTEQ-IGFDERPAA-------- 207 P R+ D R + ++K Q + Q +++P Sbjct 606 GVVVLAKNPGVVERVTADEIVIRNDQGQIDRYKLIKFQRSNQGTCINQKPIVRKGERVEK 665 Query 208 ------------------QNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGE 249 +N +VA M +EG+N EDA+++++ V+ + S YE + Sbjct 666 DQIIADGPSTDHGELALGKNVLVAYMPWEGYNYEDAILISEKLVKEDVFTSIHIEEYECD 725 Query 250 ERRYPGGQEDRFEIPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPP---- 305 R G E+ ++D+ GE+A LDE G++ +V +L+GK +P Sbjct 726 ARDTKLGPEE----ITRDIPNV-GEDALKDLDERGIIRIGAEVRPGDILVGKVTPKGETE 780 Query 306 -----RFLEEPDDMGGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLS-------K 353 R L + G ++ R+TS+ + GESG V V + E+G +LS + Sbjct 781 LTAEERLLRA---IFGEKAREVRDTSLRVPHGESGKVVDVKVFSRENGDELSPGVNMLVR 837 Query 354 VSVRDERIPELGDKFASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGH 413 V + +R +GDK A RHG KGV+ + P+EDMPF +G ++V+NP +PSRM +G Sbjct 838 VYIAQKRKISVGDKMAGRHGNKGVVARILPEEDMPFLPDGTPVEIVLNPLGVPSRMNIGQ 897 Query 414 ILEMIGGKLGSMEGRRVDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEI 473 ILE G G V F G EED+ L G GK + G TGE ++ + Sbjct 898 ILECHLGWAAKALGINVATPIFNGATEEDIFEALRKAGLPEDGKIEVRDGRTGEPFDSRV 957 Query 474 FVGVIFYQKLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAM 533 VG ++ KL H+V +K+HARS GP ++T+QP G+A+ GG R GEME +GAA Sbjct 958 TVGYVYMLKLAHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY 1017 Query 534 TLKERLLDESDREFIHICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDE 593 TL+E L +SD + + EN+ + P E +FK+L+ E Sbjct 1018 TLQEILTIKSDDVVGRVKTYEAIVKGENIPE-----PGVPE-----------SFKVLIKE 1061 Query 594 MKALGI 599 +++LG+ Sbjct 1062 LQSLGL 1067 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292] Sequence ID: Q49V52.1 Length: 1183 Range 1: 751 to 1144 Score:204 bits(520), Expect:7e-55, Method:Compositional matrix adjust., Identities:135/415(33%), Positives:217/415(52%), Gaps:35/415(8%) Query 203 ERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGEERRYPGGQEDRFE 262 E +N VV M+++G+N EDA++M++ V+ + S YE E R G E+ Sbjct 751 EMALGRNVVVGFMTWDGYNYEDAVIMSERLVKDDVYTSIHIEEYESEARDTKLGPEE--- 807 Query 263 IPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPPRFLEEPDD------MGG 316 ++D+ + A +LD+ G+V +V++ +L+GK +P E + + G Sbjct 808 -ITRDIPNV-SDSALKNLDDRGIVYVGAEVNDGDILVGKVTPKGVTELTAEERLLHAIFG 865 Query 317 LSPQKRRETSVTMRSGESGVVDTVTLMEGEDG--------SKLSKVSVRDERIPELGDKF 368 ++ R+TS+ + G G+V V + E+G ++L +V + +R +GDK Sbjct 866 EKAREVRDTSLRVPHGAGGIVLDVKVFNREEGDDTLSPGVNQLVRVYIVQKRKIHVGDKM 925 Query 369 ASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSMEGR 428 RHG KGVI L P+EDMP+ +G D+++NP +PSRM +G +LE+ G G Sbjct 926 CGRHGNKGVISKLVPEEDMPYLPDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAAKNLGI 985 Query 429 RVDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVS 488 V F G +ED+ S +E+ G GK +Y G TGE + I VGV++ KL HMV Sbjct 986 HVASPVFDGASDEDVWSTIEEAGMARDGKTVLYDGRTGEPFDNRISVGVMYMLKLAHMVD 1045 Query 489 NKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFI 548 +KLHARS GP ++T+QP G+A+ GG R GEME +GAA TL+E L +SD Sbjct 1046 DKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDDTVG 1105 Query 549 HICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGIAPRL 603 + + EN+ + P E +F++L+ E+++LG+ ++ Sbjct 1106 RVKTYESIVKGENITK-----PGVPE-----------SFRVLMKELQSLGLDVKI 1144 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Lactiplantibacillus plantarum WCFS1] Sequence ID: Q88XZ3.2 Length: 1201 Range 1: 754 to 1137 Score:204 bits(520), Expect:7e-55, Method:Compositional matrix adjust., Identities:134/406(33%), Positives:214/406(52%), Gaps:36/406(8%) Query 208 QNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGEERRYPGGQEDRF-EIPSQ 266 QN +VA M++ G+N EDA+++N+ V + S YE E R G E+ EIP+ Sbjct 754 QNPLVAFMTWNGYNFEDAIIINERLVREDVYTSIHIEEYESEARDTKLGPEEMTREIPNV 813 Query 267 DVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPPRFLEEPDD------MGGLSPQ 320 GE+A +LDEDG++ +V + +L+GK +P E + + G + Sbjct 814 ------GEDALKNLDEDGIIRIGAEVKDGDILVGKVTPKGVTELSAEERLLHAIFGEKAR 867 Query 321 KRRETSVTMRSGESGVVDTVTLMEGEDGSKLS-------KVSVRDERIPELGDKFASRHG 373 + R+TS+ + G G++ V + E+G +LS +V + +R ++GDK A RHG Sbjct 868 EVRDTSLRVPHGGGGIIQDVKIFTRENGDELSPGVNMMVRVYIAQKRKIQVGDKMAGRHG 927 Query 374 QKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSMEGRRVDGT 433 KG + + P+EDMP+ +G D++++P +PSRM +G +LE+ G G + Sbjct 928 NKGTVSIVVPEEDMPYMPDGTPIDIMLSPMGVPSRMNIGQVLELHLGMAARKLGIHMATP 987 Query 434 PFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVSNKLHA 493 F G + D+ + + G +S K +Y G TGE + + VGV+ Y KL HMV +K+HA Sbjct 988 VFDGAQDTDIWEAIREAGVDSDAKSIVYDGRTGEPFDKRVAVGVMHYMKLSHMVDDKIHA 1047 Query 494 RSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIHICGN 553 RS GP ++T+QP G+A+ GG R GEME +GAA TL+E L +SD + G Sbjct 1048 RSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSD----DVVGR 1103 Query 554 CGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGI 599 T V+ + P E +F++L+ E++ALG+ Sbjct 1104 VK-TYEAIVKGEPIPKPGVPE-----------SFRVLVKELQALGL 1137 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Streptococcus pneumoniae JJA] Sequence ID: C1CGP4.1 Length: 1203 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Streptococcus pneumoniae TIGR4] Sequence ID: Q97NQ7.1 Length: 1203 Range 1: 748 to 1144 Score:204 bits(520), Expect:8e-55, Method:Compositional matrix adjust., Identities:141/422(33%), Positives:220/422(52%), Gaps:42/422(9%) Query 203 ERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGEERRYP-GGQEDRF 261 E QN +VA M++EG+N EDA++M++ V+ + S YE E R G +E Sbjct 748 EMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVYTSVHLEEYESETRDTKLGPEEITR 807 Query 262 EIPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPP---------RFLEEPD 312 EIP+ GE+A LDE G++ +V E +L+GK +P R L Sbjct 808 EIPNV------GEDALKDLDEMGIIRIGAEVKEGDILVGKVTPKGEKDLSAEERLLHA-- 859 Query 313 DMGGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLS-------KVSVRDERIPELG 365 + G ++ R+TS+ + G GVV V + +G +L +V + +R ++G Sbjct 860 -IFGDKSREVRDTSLRVPHGADGVVRDVKIFTRVNGDELQSGVNMLVRVYIAQKRKIKVG 918 Query 366 DKFASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSM 425 DK A RHG KGV+ + P EDMP+ +G D+++NP +PSRM +G ++E+ G Sbjct 919 DKMAGRHGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLGVPSRMNIGQVMELHLGMAART 978 Query 426 EGRRVDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYH 485 G + F G EDL S +++ G +S K +Y G TGE + + VGV++ KL+H Sbjct 979 LGIHIATPVFDGASSEDLWSTVKEAGMDSDAKTILYDGRTGEPFDNRVSVGVMYMIKLHH 1038 Query 486 MVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDR 545 MV +KLHARS GP +T+QP G+A+ GG R GEME +GA+ L+E L +SD Sbjct 1039 MVDDKLHARSVGPYSTVTQQPLGGKAQFGGQRFGEMEVWALEAYGASNVLQEILTYKSDD 1098 Query 546 EFIHICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGIAPRLEL 605 N + A E + + + P G + +F++L+ E+++LG+ R+ Sbjct 1099 I------NGRLKAYEAITKGKP-IPKPG---------VPESFRVLVKELQSLGLDMRVLD 1142 Query 606 ED 607 ED Sbjct 1143 ED 1144 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Streptococcus pneumoniae ATCC 700669] Sequence ID: B8ZNW7.1 Length: 1203 Range 1: 748 to 1144 Score:204 bits(520), Expect:9e-55, Method:Compositional matrix adjust., Identities:141/422(33%), Positives:220/422(52%), Gaps:42/422(9%) Query 203 ERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGEERRYP-GGQEDRF 261 E QN +VA M++EG+N EDA++M++ V+ + S YE E R G +E Sbjct 748 EMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVYTSVHLEEYESETRDTKLGPEEITR 807 Query 262 EIPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPP---------RFLEEPD 312 EIP+ GE+A LDE G++ +V E +L+GK +P R L Sbjct 808 EIPNV------GEDALKDLDEMGIIRIGAEVKEGDILVGKVTPKGEKDLSAEERLLHA-- 859 Query 313 DMGGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLS-------KVSVRDERIPELG 365 + G ++ R+TS+ + G GVV V + +G +L +V + +R ++G Sbjct 860 -IFGDKSREVRDTSLRVPHGADGVVRDVKIFTRVNGDELQSGVNMLVRVYIAQKRKIKVG 918 Query 366 DKFASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSM 425 DK A RHG KGV+ + P EDMP+ +G D+++NP +PSRM +G ++E+ G Sbjct 919 DKMAGRHGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLGVPSRMNIGQVMELHLGMAART 978 Query 426 EGRRVDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYH 485 G + F G EDL S +++ G +S K +Y G TGE + + VGV++ KL+H Sbjct 979 LGIHIATPVFDGASSEDLWSTVKEAGMDSDAKTILYDGRTGEPFDNRVSVGVMYMIKLHH 1038 Query 486 MVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDR 545 MV +KLHARS GP +T+QP G+A+ GG R GEME +GA+ L+E L +SD Sbjct 1039 MVDDKLHARSVGPYSTVTQQPLGGKAQFGGQRFGEMEVWALEAYGASNVLQEILTYKSDD 1098 Query 546 EFIHICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGIAPRLEL 605 N + A E + + + P G + +F++L+ E+++LG+ R+ Sbjct 1099 I------NGRLKAYEAITKGKP-IPKPG---------VPESFRVLVKELQSLGLDMRVLD 1142 Query 606 ED 607 ED Sbjct 1143 ED 1144 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Streptococcus pneumoniae 70585] Sequence ID: C1CA06.1 Length: 1198 Range 1: 748 to 1144 Score:204 bits(519), Expect:1e-54, Method:Compositional matrix adjust., Identities:141/422(33%), Positives:220/422(52%), Gaps:42/422(9%) Query 203 ERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGEERRYP-GGQEDRF 261 E QN +VA M++EG+N EDA++M++ V+ + S YE E R G +E Sbjct 748 EMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVYTSVHLEEYESETRDTKLGPEEITR 807 Query 262 EIPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPP---------RFLEEPD 312 EIP+ GE+A LDE G++ +V E +L+GK +P R L Sbjct 808 EIPNV------GEDALKDLDEMGIIRIGAEVKEGDILVGKVTPKGEKDLSAEERLLHA-- 859 Query 313 DMGGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLS-------KVSVRDERIPELG 365 + G ++ R+TS+ + G GVV V + +G +L +V + +R ++G Sbjct 860 -IFGDKSREVRDTSLRVPHGADGVVRDVKIFTRVNGDELQSGVNMLVRVYIAQKRKIKVG 918 Query 366 DKFASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSM 425 DK A RHG KGV+ + P EDMP+ +G D+++NP +PSRM +G ++E+ G Sbjct 919 DKMAGRHGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLGVPSRMNIGQVMELHLGMAART 978 Query 426 EGRRVDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYH 485 G + F G EDL S +++ G +S K +Y G TGE + + VGV++ KL+H Sbjct 979 LGIHIATPVFDGASSEDLWSTVKEAGMDSDAKTILYDGRTGEPFDNRVSVGVMYMIKLHH 1038 Query 486 MVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDR 545 MV +KLHARS GP +T+QP G+A+ GG R GEME +GA+ L+E L +SD Sbjct 1039 MVDDKLHARSVGPYSTVTQQPLGGKAQFGGQRFGEMEVWALEAYGASNVLQEILTYKSDD 1098 Query 546 EFIHICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGIAPRLEL 605 N + A E + + + P G + +F++L+ E+++LG+ R+ Sbjct 1099 I------NGRLKAYEAITKGKP-IPKPG---------VPESFRVLVKELQSLGLDMRVLD 1142 Query 606 ED 607 ED Sbjct 1143 ED 1144 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Streptococcus pneumoniae P1031] Sequence ID: C1CMQ8.1 Length: 1203 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Streptococcus pneumoniae Taiwan19F-14] Sequence ID: C1CTL4.1 Length: 1203 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Streptococcus pneumoniae D39] Sequence ID: Q04IK6.1 Length: 1203 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Streptococcus pneumoniae R6] Sequence ID: Q8DNF0.2 Length: 1203 Range 1: 748 to 1144 Score:204 bits(519), Expect:1e-54, Method:Compositional matrix adjust., Identities:141/422(33%), Positives:220/422(52%), Gaps:42/422(9%) Query 203 ERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGEERRYP-GGQEDRF 261 E QN +VA M++EG+N EDA++M++ V+ + S YE E R G +E Sbjct 748 EMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVYTSVHLEEYESETRDTKLGPEEITR 807 Query 262 EIPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPP---------RFLEEPD 312 EIP+ GE+A LDE G++ +V E +L+GK +P R L Sbjct 808 EIPNV------GEDALKDLDEMGIIRIGAEVKEGDILVGKVTPKGEKDLSAEERLLHA-- 859 Query 313 DMGGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLS-------KVSVRDERIPELG 365 + G ++ R+TS+ + G GVV V + +G +L +V + +R ++G Sbjct 860 -IFGDKSREVRDTSLRVPHGADGVVRDVKIFTRVNGDELQSGVNMLVRVYIAQKRKIKVG 918 Query 366 DKFASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSM 425 DK A RHG KGV+ + P EDMP+ +G D+++NP +PSRM +G ++E+ G Sbjct 919 DKMAGRHGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLGVPSRMNIGQVMELHLGMAART 978 Query 426 EGRRVDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYH 485 G + F G EDL S +++ G +S K +Y G TGE + + VGV++ KL+H Sbjct 979 LGIHIATPVFDGASSEDLWSTVKEAGMDSDAKTILYDGRTGEPFDNRVSVGVMYMIKLHH 1038 Query 486 MVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDR 545 MV +KLHARS GP +T+QP G+A+ GG R GEME +GA+ L+E L +SD Sbjct 1039 MVDDKLHARSVGPYSTVTQQPLGGKAQFGGQRFGEMEVWALEAYGASNVLQEILTYKSDD 1098 Query 546 EFIHICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGIAPRLEL 605 N + A E + + + P G + +F++L+ E+++LG+ R+ Sbjct 1099 I------NGRLKAYEAITKGKP-IPKPG---------VPESFRVLVKELQSLGLDMRVLD 1142 Query 606 ED 607 ED Sbjct 1143 ED 1144 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Streptococcus suis 05ZYH33] Sequence ID: A4VSK2.1 Length: 1190 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Streptococcus suis 98HAH33] Sequence ID: A4VYU3.1 Length: 1190 Range 1: 747 to 1143 Score:204 bits(519), Expect:1e-54, Method:Compositional matrix adjust., Identities:141/422(33%), Positives:223/422(52%), Gaps:42/422(9%) Query 203 ERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGEERRYPGGQED-RF 261 E QN +VA M++EG+N EDA++M++ V+ + S YE E R G E+ Sbjct 747 EMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVYTSVHLEEYESETRDTKLGPEEITR 806 Query 262 EIPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPP---------RFLEEPD 312 EIP+ GE+A +LDE G++ +V E +L+GK +P R L Sbjct 807 EIPNV------GEDALRNLDEMGIIRIGAEVKEGDILVGKVTPKGEKDLSAEERLLHA-- 858 Query 313 DMGGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLS-------KVSVRDERIPELG 365 + G ++ R+TS+ + G GVV V + +G +L +V + +R ++G Sbjct 859 -IFGDKSREVRDTSLRVPHGADGVVRDVKIFTRANGDELQSGVNMLVRVYIAQKRKIKVG 917 Query 366 DKFASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSM 425 DK A RHG KGV+ + P EDMP+ +G D+++NP +PSRM +G ++E+ G Sbjct 918 DKMAGRHGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLGVPSRMNIGQVMELHLGMAARN 977 Query 426 EGRRVDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYH 485 G + F G EDL S +++ G +S K +Y G TGE + + VGV++ KL+H Sbjct 978 LGIHIATPVFDGASSEDLWSTVKEAGMDSDAKTILYDGRTGEPFDNRVSVGVMYMIKLHH 1037 Query 486 MVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDR 545 MV +KLHARS GP ++T+QP G+A+ GG R GEME +GA+ L+E L +SD Sbjct 1038 MVDDKLHARSVGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASNVLQEILTYKSD- 1096 Query 546 EFIHICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGIAPRLEL 605 + G + A E + + + P G + +F++L+ E+++LG+ R+ Sbjct 1097 ---DVTGR--LKAYEAITKGKP-IPKPG---------VPESFRVLVKELQSLGLDMRVLD 1141 Query 606 ED 607 ED Sbjct 1142 ED 1143 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Streptococcus pneumoniae Hungary19A-6] Sequence ID: B1I8R4.1 Length: 1203 Range 1: 748 to 1144 Score:204 bits(519), Expect:1e-54, Method:Compositional matrix adjust., Identities:141/422(33%), Positives:220/422(52%), Gaps:42/422(9%) Query 203 ERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGEERRYP-GGQEDRF 261 E QN +VA M++EG+N EDA++M++ V+ + S YE E R G +E Sbjct 748 EMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVYTSVHLEEYESETRDTKLGPEEITR 807 Query 262 EIPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPP---------RFLEEPD 312 EIP+ GE+A LDE G++ +V E +L+GK +P R L Sbjct 808 EIPNV------GEDALKDLDEMGIIRIGAEVKEGDILVGKVTPKGEKDLSAEERLLHA-- 859 Query 313 DMGGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLS-------KVSVRDERIPELG 365 + G ++ R+TS+ + G GVV V + +G +L +V + +R ++G Sbjct 860 -IFGDKSREVRDTSLRVPHGADGVVRDVKIFTRVNGDELQSGVNMLVRVYIAQKRKIKVG 918 Query 366 DKFASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSM 425 DK A RHG KGV+ + P EDMP+ +G D+++NP +PSRM +G ++E+ G Sbjct 919 DKMAGRHGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLGVPSRMNIGQVMELHLGMAART 978 Query 426 EGRRVDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYH 485 G + F G EDL S +++ G +S K +Y G TGE + + VGV++ KL+H Sbjct 979 LGIHIATPVFDGASSEDLWSTVKEAGMDSDAKTILYDGRTGEPFDNRVSVGVMYMIKLHH 1038 Query 486 MVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDR 545 MV +KLHARS GP +T+QP G+A+ GG R GEME +GA+ L+E L +SD Sbjct 1039 MVDDKLHARSVGPYSTVTQQPLGGKAQFGGQRFGEMEVWALEAYGASNVLQEILTYKSDD 1098 Query 546 EFIHICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGIAPRLEL 605 N + A E + + + P G + +F++L+ E+++LG+ R+ Sbjct 1099 I------NGRLKAYEAITKGKP-IPKPG---------VPESFRVLVKELQSLGLDMRVLD 1142 Query 606 ED 607 ED Sbjct 1143 ED 1144 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Streptococcus pneumoniae G54] Sequence ID: B5E2F3.1 Length: 1203 Range 1: 748 to 1144 Score:204 bits(519), Expect:1e-54, Method:Compositional matrix adjust., Identities:141/422(33%), Positives:220/422(52%), Gaps:42/422(9%) Query 203 ERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGEERRYPGGQED-RF 261 E QN +VA M++EG+N EDA++M++ V+ + S YE E R G E+ Sbjct 748 EMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVYTSVHLEEYESETRDTKLGPEEITR 807 Query 262 EIPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPP---------RFLEEPD 312 EIP+ GE+A LDE G++ +V E +L+GK +P R L Sbjct 808 EIPNV------GEDALKDLDEMGIIRIGAEVKEGDILVGKVTPKGEKDLSAEERLLHA-- 859 Query 313 DMGGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLS-------KVSVRDERIPELG 365 + G ++ R+TS+ + G GVV V + +G +L +V + +R ++G Sbjct 860 -IFGDKSREVRDTSLRVPHGADGVVRDVKIFTRVNGDELQSGVNMLVRVYIAQKRKIKVG 918 Query 366 DKFASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSM 425 DK A RHG KGV+ + P EDMP+ +G D+++NP +PSRM +G ++E+ G Sbjct 919 DKMAGRHGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLGVPSRMNIGQVMELHLGMAART 978 Query 426 EGRRVDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYH 485 G + F G EDL S +++ G +S K +Y G TGE + + VGV++ KL+H Sbjct 979 LGIHIATPVFDGASSEDLWSTVKEAGMDSDAKTILYDGRTGEPFDNRVSVGVMYMIKLHH 1038 Query 486 MVSNKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDR 545 MV +KLHARS GP +T+QP G+A+ GG R GEME +GA+ L+E L +SD Sbjct 1039 MVDDKLHARSVGPYSTVTQQPLGGKAQFGGQRFGEMEVWALEAYGASNVLQEILTYKSDD 1098 Query 546 EFIHICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGIAPRLEL 605 N + A E + + + P G + +F++L+ E+++LG+ R+ Sbjct 1099 I------NGRLKAYEAITKGKP-IPKPG---------VPESFRVLVKELQSLGLDMRVLD 1142 Query 606 ED 607 ED Sbjct 1143 ED 1144 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Listeria welshimeri serovar 6b str. SLCC5334] Sequence ID: A0AF63.1 Length: 1184 Range 1: 753 to 1145 Score:204 bits(518), Expect:2e-54, Method:Compositional matrix adjust., Identities:138/414(33%), Positives:218/414(52%), Gaps:34/414(8%) Query 203 ERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGEERRYPGGQEDRFE 262 E +N +VA M+++G+N EDA++M++ V+ + S +E E R G E+ Sbjct 753 ELALGRNVLVAFMTWDGYNYEDAIIMSERLVKDDVYTSIHIEEFESEARDTKLGPEEM-- 810 Query 263 IPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPPRFLEEPDD------MGG 316 ++D+ GE+A LDE G++ +V +N +L+GK +P E + + G Sbjct 811 --TRDIPNV-GEDALRDLDERGIIRVGAEVKDNDLLVGKVTPKGVTELTAEERLLHAIFG 867 Query 317 LSPQKRRETSVTMRSGESGVVDTVTLMEGEDG-------SKLSKVSVRDERIPELGDKFA 369 ++ R+TS+ + G G+V V + E G ++L +V + +R GDK A Sbjct 868 EKAREVRDTSLRVPHGGGGIVLDVKIFTREAGDELPPGVNQLVRVYIVQKRKIHEGDKMA 927 Query 370 SRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSMEGRR 429 RHG KGVI + P+EDMPF +G D+++NP +PSRM +G +LE+ G G Sbjct 928 GRHGNKGVISRILPEEDMPFMPDGTPVDIMLNPLGVPSRMNIGQVLELHLGMAARALGIH 987 Query 430 VDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVSN 489 V F G +EED+ S +E+ G K +Y G +GE + I VGV++ KL HMV + Sbjct 988 VATPVFDGANEEDVWSTVEEAGMARDAKTVLYDGRSGEAFDNRISVGVMYMIKLAHMVDD 1047 Query 490 KLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIH 549 KLHARS GP ++T+QP G+A+ GG R GEME +GAA TL+E L +SD Sbjct 1048 KLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTIKSDDVVGR 1107 Query 550 ICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGIAPRL 603 + + E+V + P E +FK+L+ E+++LG+ ++ Sbjct 1108 VKTYEAIVKGESVPE-----PGVPE-----------SFKVLIKELQSLGMDVKM 1145 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Listeria innocua Clip11262] Sequence ID: Q92F22.1 Length: 1184 Range 1: 753 to 1145 Score:203 bits(517), Expect:2e-54, Method:Compositional matrix adjust., Identities:138/414(33%), Positives:218/414(52%), Gaps:34/414(8%) Query 203 ERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGEERRYPGGQEDRFE 262 E +N +VA M+++G+N EDA++M++ V+ + S +E E R G E+ Sbjct 753 ELALGRNVLVAFMTWDGYNYEDAIIMSERLVKDDVYTSIHIEEFESEARDTKLGPEEM-- 810 Query 263 IPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPPRFLEEPDD------MGG 316 ++D+ GE+A LDE G++ +V +N +L+GK +P E + + G Sbjct 811 --TRDIPNV-GEDALRDLDERGIIRVGAEVKDNDLLVGKVTPKGVTELTAEERLLHAIFG 867 Query 317 LSPQKRRETSVTMRSGESGVVDTVTLMEGEDG-------SKLSKVSVRDERIPELGDKFA 369 ++ R+TS+ + G G+V V + E G ++L +V + +R GDK A Sbjct 868 EKAREVRDTSLRVPHGGGGIVLDVKIFTREAGDELPPGVNQLVRVYIVQKRKIHEGDKMA 927 Query 370 SRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSMEGRR 429 RHG KGVI + P+EDMPF +G D+++NP +PSRM +G +LE+ G G Sbjct 928 GRHGNKGVISRILPEEDMPFMPDGTPVDIMLNPLGVPSRMNIGQVLELHLGMAARALGIH 987 Query 430 VDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVSN 489 V F G +EED+ S +E+ G K +Y G +GE + I VGV++ KL HMV + Sbjct 988 VATPVFDGANEEDVWSTVEEAGMARDAKTVLYDGRSGEAFDNRISVGVMYMIKLAHMVDD 1047 Query 490 KLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIH 549 KLHARS GP ++T+QP G+A+ GG R GEME +GAA TL+E L +SD Sbjct 1048 KLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTIKSDDVVGR 1107 Query 550 ICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGIAPRL 603 + + E+V + P E +FK+L+ E+++LG+ ++ Sbjct 1108 VKTYEAIVKGESVPE-----PGVPE-----------SFKVLIKELQSLGMDVKM 1145 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Listeria monocytogenes serotype 4b str. CLIP 80459] Sequence ID: C1KYJ3.1 Length: 1184 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Listeria monocytogenes serotype 4b str. F2365] Sequence ID: Q724F0.1 Length: 1184 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Listeria monocytogenes EGD-e] Sequence ID: Q9RLT9.1 Length: 1184 Range 1: 753 to 1145 Score:203 bits(517), Expect:2e-54, Method:Compositional matrix adjust., Identities:138/414(33%), Positives:218/414(52%), Gaps:34/414(8%) Query 203 ERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGEERRYPGGQEDRFE 262 E +N +VA M+++G+N EDA++M++ V+ + S +E E R G E+ Sbjct 753 ELALGRNVLVAFMTWDGYNYEDAIIMSERLVKDDVYTSIHIEEFESEARDTKLGPEEM-- 810 Query 263 IPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPPRFLEEPDD------MGG 316 ++D+ GE+A LDE G++ +V +N +L+GK +P E + + G Sbjct 811 --TRDIPNV-GEDALRDLDERGIIRVGAEVKDNDLLVGKVTPKGVTELTAEERLLHAIFG 867 Query 317 LSPQKRRETSVTMRSGESGVVDTVTLMEGEDG-------SKLSKVSVRDERIPELGDKFA 369 ++ R+TS+ + G G+V V + E G ++L +V + +R GDK A Sbjct 868 EKAREVRDTSLRVPHGGGGIVLDVKIFTREAGDELPPGVNQLVRVYIVQKRKIHEGDKMA 927 Query 370 SRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSMEGRR 429 RHG KGVI + P+EDMPF +G D+++NP +PSRM +G +LE+ G G Sbjct 928 GRHGNKGVISRILPEEDMPFMPDGTPVDIMLNPLGVPSRMNIGQVLELHLGMAARALGIH 987 Query 430 VDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVSN 489 V F G +EED+ S +E+ G K +Y G +GE + I VGV++ KL HMV + Sbjct 988 VATPVFDGANEEDVWSTVEEAGMARDAKTILYDGRSGEAFDNRISVGVMYMIKLAHMVDD 1047 Query 490 KLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIH 549 KLHARS GP ++T+QP G+A+ GG R GEME +GAA TL+E L +SD Sbjct 1048 KLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTIKSDDVVGR 1107 Query 550 ICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGIAPRL 603 + + E+V + P E +FK+L+ E+++LG+ ++ Sbjct 1108 VKTYEAIVKGESVPE-----PGVPE-----------SFKVLIKELQSLGMDVKM 1145 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Oceanobacillus iheyensis HTE831] Sequence ID: Q8ETY8.1 Length: 1179 Range 1: 755 to 1147 Score:203 bits(517), Expect:2e-54, Method:Compositional matrix adjust., Identities:136/414(33%), Positives:214/414(51%), Gaps:34/414(8%) Query 203 ERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGEERRYPGGQEDRFE 262 E QN +V M++EG+N EDA++M++ V+ + S +E E R G E+ Sbjct 755 ELALGQNVLVGFMTWEGYNYEDAIIMSERLVKDDVYTSIHIEEFESEARDTKLGPEE--- 811 Query 263 IPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPPRFLEEPDD------MGG 316 ++D+ GE+A +LDE G++ +V + +L+GK +P E + + G Sbjct 812 -ITRDIPNV-GEDALKNLDEHGIIRVGAEVTDGDILVGKVTPKGVTELSAEERLLHAIFG 869 Query 317 LSPQKRRETSVTMRSGESGVVDTVTLMEGEDG-------SKLSKVSVRDERIPELGDKFA 369 ++ R+TS+ + G G+V V + EDG ++L + + +R GDK A Sbjct 870 EKAREVRDTSLRVPHGGGGIVLDVKIFNREDGDELPPGVNQLVRAYIVQKRKIHEGDKMA 929 Query 370 SRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSMEGRR 429 RHG KGVI + P+EDMP+ +G D+++NP +PSRM +G + E+ G G Sbjct 930 GRHGNKGVISKILPEEDMPYLPDGTPIDIMLNPLGVPSRMNIGQVFELHLGMAARQLGIH 989 Query 430 VDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVSN 489 V F G EED+ LE+ G K +Y G TGE + + VGV++ KL HMV + Sbjct 990 VASPVFDGAREEDVWETLEEAGMPRDAKTVLYDGRTGEAFDNRVSVGVMYMIKLAHMVDD 1049 Query 490 KLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIH 549 KLHARS GP ++T+QP G+A+ GG R GEME +GAA TL+E L +SD Sbjct 1050 KLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDTVGR 1109 Query 550 ICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGIAPRL 603 + + +NV + P E +FK+L+ E+++LG+ ++ Sbjct 1110 VKTYEAIVKGDNVPE-----PGVPE-----------SFKVLIKELQSLGMDVKM 1147 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Listeria monocytogenes HCC23] Sequence ID: B8DEY8.1 Length: 1184 Range 1: 753 to 1145 Score:203 bits(517), Expect:2e-54, Method:Compositional matrix adjust., Identities:138/414(33%), Positives:218/414(52%), Gaps:34/414(8%) Query 203 ERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGEERRYPGGQEDRFE 262 E +N +VA M+++G+N EDA++M++ V+ + S +E E R G E+ Sbjct 753 ELALGRNVLVAFMTWDGYNYEDAIIMSERLVKDDVYTSIHIEEFESEARDTKLGPEEM-- 810 Query 263 IPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPPRFLEEPDD------MGG 316 ++D+ GE+A LDE G++ +V +N +L+GK +P E + + G Sbjct 811 --TRDIPNV-GEDALRDLDERGIIRVGAEVKDNDLLVGKVTPKGVTELTAEERLLHAIFG 867 Query 317 LSPQKRRETSVTMRSGESGVVDTVTLMEGEDG-------SKLSKVSVRDERIPELGDKFA 369 ++ R+TS+ + G G+V V + E G ++L +V + +R GDK A Sbjct 868 EKAREVRDTSLRVPHGGGGIVLDVKIFTREAGDELPPGVNQLVRVYIVQKRKIHEGDKMA 927 Query 370 SRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSMEGRR 429 RHG KGVI + P+EDMPF +G D+++NP +PSRM +G +LE+ G G Sbjct 928 GRHGNKGVISRILPEEDMPFMPDGTPVDIMLNPLGVPSRMNIGQVLELHLGMAARALGIH 987 Query 430 VDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVSN 489 V F G +EED+ S +E+ G K +Y G +GE + I VGV++ KL HMV + Sbjct 988 VATPVFDGANEEDVWSTVEEAGMARDAKTILYDGRSGEAFDNRISVGVMYMIKLAHMVDD 1047 Query 490 KLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIH 549 KLHARS GP ++T+QP G+A+ GG R GEME +GAA TL+E L +SD Sbjct 1048 KLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTIKSDDVVGR 1107 Query 550 ICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGIAPRL 603 + + E+V + P E +FK+L+ E+++LG+ ++ Sbjct 1108 VKTYEAIVKGESVPE-----PGVPE-----------SFKVLIKELQSLGMDVKM 1145 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Sequence ID: Q8RHI6.1 Length: 1184 Range 1: 749 to 1134 Score:203 bits(517), Expect:2e-54, Method:Compositional matrix adjust., Identities:140/408(34%), Positives:222/408(54%), Gaps:38/408(9%) Query 208 QNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGEERRYPGGQED-RFEIPSQ 266 +N ++ M +EG+N EDA++++ + + S YE + R G E+ EIP+ Sbjct 749 RNILMGFMPWEGYNYEDAILISDRLRKDDVFTSIHIEEYEIDARTTKLGDEEITREIPNV 808 Query 267 DVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPPRFLEEPDD------MGGLSPQ 320 E A +LDE+G++ ++V +L+GKT+P E P + + G + Sbjct 809 ------SESALRNLDENGVIMIGSEVGPGDILVGKTAPKGETEPPAEEKLLRAIFGEKAR 862 Query 321 KRRETSVTMRSGESGVVDTVTLMEGEDGSKLS-------KVSVRDERIPELGDKFASRHG 373 R+TS+TM G GVV + + E+G +L +V V ++R +GDK + RHG Sbjct 863 DVRDTSLTMPHGSKGVVVDILELSRENGDELKAGVNKSIRVLVAEKRKITVGDKMSGRHG 922 Query 374 QKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEM-IGGKLGSMEGRRVDG 432 KGV+ + P EDMPF E+G D+V+NP +PSRM +G +LE+ +G + ++ G Sbjct 923 NKGVVSRVLPAEDMPFLEDGTHLDVVLNPLGVPSRMNIGQVLEVHLGMAMRTLNGGTCIA 982 Query 433 TP-FLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVSNKL 491 TP F G EE ++ LE G+ GK T+Y G TGEK + ++ VG+++ KL+H+V +K+ Sbjct 983 TPVFDGATEEQVKDYLEKQGYPRTGKVTLYDGRTGEKFDNKVTVGIMYMLKLHHLVEDKM 1042 Query 492 HARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIHIC 551 HAR+ GP ++T+QP G+A+ GG R+GEME +GA+ L+E L +SD Sbjct 1043 HARAIGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGASNILQEMLTVKSD------- 1095 Query 552 GNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGI 599 G T T + P E+D+ E +FK+LL E +AL + Sbjct 1096 DITGRTKTYEAIIKGEAMP----ESDLPE-----SFKVLLKEFQALAL 1134 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Lacticaseibacillus paracasei ATCC 334] Sequence ID: Q034X0.1 Length: 1199 Range 1: 749 to 1137 Score:203 bits(516), Expect:2e-54, Method:Compositional matrix adjust., Identities:137/411(33%), Positives:216/411(52%), Gaps:36/411(8%) Query 203 ERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGEERRYPGGQED-RF 261 E QN ++A M++ +N EDA+V+++ V+ + S YE E R G E+ Sbjct 749 ELALGQNPIIAFMTWNMYNYEDAIVLSERLVKDDVYTSIHIEEYESEARDTKLGPEEVTR 808 Query 262 EIPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPPRFLEEPDD------MG 315 EIP+ GEEA LDE G+V +V + +L+GK +P E + + Sbjct 809 EIPNV------GEEALKDLDEFGVVRVGAEVRDGDILVGKVTPKGVTELSAEERLLHAIF 862 Query 316 GLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLS-------KVSVRDERIPELGDKF 368 G ++ R+TS+ + G G++ V + E G +LS +V + +R ++GDK Sbjct 863 GEKAREVRDTSLRVPHGGGGIIQDVKIFTREAGDELSPGVNMMVRVYITQKRKIQVGDKM 922 Query 369 ASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSMEGR 428 A RHG KG + + P+EDMP+ +G D+ ++P +PSRM +G +LE+ G G Sbjct 923 AGRHGNKGTVSVVVPEEDMPYLPDGTPVDICLSPMGVPSRMNIGQVLELHLGMAARNLGI 982 Query 429 RVDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVS 488 V F G +++DL + +++ G S GK +Y G TGE E + VG+++Y KL HMV Sbjct 983 HVATPVFDGANDKDLWATVKEAGMASDGKSVLYDGRTGEPFENRVSVGIMYYMKLSHMVD 1042 Query 489 NKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFI 548 +K+HARS GP ++T+QP G+A+ GG R GEME +GAA TL+E L +SD Sbjct 1043 DKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSD---- 1098 Query 549 HICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGI 599 + G T V+ + P E +F++L+ E++ALG+ Sbjct 1099 DVVGRV-KTYEAIVKGEPIPKPGVPE-----------SFRVLVKELQALGL 1137 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Staphylococcus aureus subsp. aureus JH9] Sequence ID: A5IQ96.1 Length: 1183 Range 1: 751 to 1140 Score:203 bits(516), Expect:2e-54, Method:Compositional matrix adjust., Identities:134/411(33%), Positives:216/411(52%), Gaps:35/411(8%) Query 203 ERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGEERRYPGGQEDRFE 262 E +N VV M+++G+N EDA++M++ V+ + S YE E R G E+ Sbjct 751 EMALGRNVVVGFMTWDGYNYEDAVIMSERLVKDDVYTSIHIEEYESEARDTKLGPEE--- 807 Query 263 IPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPPRFLEEPDD------MGG 316 ++D+ E A +LD+ G+V +V + +L+GK +P E + + G Sbjct 808 -ITRDIPNV-SESALKNLDDRGIVYIGAEVKDGDILVGKVTPKGVTELTAEERLLHAIFG 865 Query 317 LSPQKRRETSVTMRSGESGVVDTVTLMEGEDG--------SKLSKVSVRDERIPELGDKF 368 ++ R+TS+ + G G+V V + E+G ++L +V + +R +GDK Sbjct 866 EKAREVRDTSLRVPHGAGGIVLDVKVFNREEGDDTLSPGVNQLVRVYIVQKRKIHVGDKM 925 Query 369 ASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSMEGR 428 RHG KGVI + P+EDMP+ +G D+++NP +PSRM +G +LE+ G G Sbjct 926 CGRHGNKGVISKIVPEEDMPYLPDGRPIDIMLNPLGVPSRMNIGQVLELHLGMAAKNLGI 985 Query 429 RVDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVS 488 V F G +++D+ S +E+ G GK +Y G TGE + I VGV++ KL HMV Sbjct 986 HVASPVFDGANDDDVWSTIEEAGMARDGKTVLYDGRTGEPFDNRISVGVMYMLKLAHMVD 1045 Query 489 NKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFI 548 +KLHARS GP ++T+QP G+A+ GG R GEME +GAA TL+E L +SD Sbjct 1046 DKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDDTVG 1105 Query 549 HICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGI 599 + + EN+ + P+ E +F++L+ E+++LG+ Sbjct 1106 RVKTYEAIVKGENISR-----PSVPE-----------SFRVLMKELQSLGL 1140 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Enterococcus faecium] Sequence ID: Q8GCR4.1 Length: 1208 Range 1: 751 to 1149 Score:203 bits(516), Expect:2e-54, Method:Compositional matrix adjust., Identities:142/421(34%), Positives:219/421(52%), Gaps:37/421(8%) Query 203 ERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGEERRYPGGQED-RF 261 E QN +V M++EG+N EDA++M++ V+ + S YE E R G E+ Sbjct 751 EMALGQNVLVGFMTWEGYNYEDAIIMSRRLVKDDVYTSIHIEEYESEARDTKLGPEEITR 810 Query 262 EIPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPPRFLEEPDD------MG 315 EIP+ GE+A LDE G++ +V + +L+GK +P E + + Sbjct 811 EIPNV------GEDALKDLDEMGIIRIGAEVQDGDLLVGKVTPKGVTELSAEERLLHAIF 864 Query 316 GLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLS-------KVSVRDERIPELGDKF 368 G ++ R+TS+ + G G+V V + E G +LS +V + +R GDK Sbjct 865 GEKAREVRDTSLRVPHGGGGIVHDVKIFTREAGDELSPGVNMLVRVYIVQKRKIHEGDKM 924 Query 369 ASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSMEGR 428 A RHG KGV+ + P+EDMPF +G D+++NP +PSRM +G +LE+ G G Sbjct 925 AGRHGNKGVVSRIMPEEDMPFLPDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARQLGI 984 Query 429 RVDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVS 488 V F G +ED+ + + G S K +Y G TGE + + VGV++ KL HMV Sbjct 985 HVATPVFDGASDEDVWETVREAGMASDAKTILYDGRTGEPFDGRVSVGVMYMIKLAHMVD 1044 Query 489 NKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFI 548 +KLHARS GP ++T+QP G+A+ GG R GEME +GAA TL+E L +SD Sbjct 1045 DKLHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSD---- 1100 Query 549 HICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGIAPR-LELED 607 + G T V+ + P E +F++L+ E+++LG+ R L+++D Sbjct 1101 DVVGRV-KTYEAIVKGEPIPKPGVPE-----------SFRVLVKELQSLGLDMRVLDIKD 1148 Query 608 A 608 + Sbjct 1149 S 1149 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Lacticaseibacillus casei BL23] Sequence ID: B3WAM8.1 Length: 1199 Range 1: 754 to 1137 Score:203 bits(516), Expect:2e-54, Method:Compositional matrix adjust., Identities:136/406(33%), Positives:215/406(52%), Gaps:36/406(8%) Query 208 QNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGEERRYPGGQED-RFEIPSQ 266 QN ++A M++ +N EDA+V+++ V+ + S YE E R G E+ EIP+ Sbjct 754 QNPIIAFMTWNMYNYEDAIVLSERLVKDDVYTSIHIEEYESEARDTKLGPEEVTREIPNV 813 Query 267 DVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPPRFLEEPDD------MGGLSPQ 320 GEEA LDE G+V +V + +L+GK +P E + + G + Sbjct 814 ------GEEALKDLDEFGVVRVGAEVRDGDILVGKVTPKGVTELSAEERLLHAIFGEKAR 867 Query 321 KRRETSVTMRSGESGVVDTVTLMEGEDGSKLS-------KVSVRDERIPELGDKFASRHG 373 + R+TS+ + G G++ V + E G +LS +V + +R ++GDK A RHG Sbjct 868 EVRDTSLRVPHGGGGIIQDVKIFTREAGDELSPGVNMMVRVYITQKRKIQVGDKMAGRHG 927 Query 374 QKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSMEGRRVDGT 433 KG + + P+EDMP+ +G D+ ++P +PSRM +G +LE+ G G V Sbjct 928 NKGTVSVVVPEEDMPYLPDGTPVDICLSPMGVPSRMNIGQVLELHLGMAARNLGIHVATP 987 Query 434 PFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVSNKLHA 493 F G +++DL + +++ G S GK +Y G TGE E + VG+++Y KL HMV +K+HA Sbjct 988 VFDGANDKDLWATVKEAGMASDGKSVLYDGRTGEPFENRVSVGIMYYMKLSHMVDDKIHA 1047 Query 494 RSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFIHICGN 553 RS GP ++T+QP G+A+ GG R GEME +GAA TL+E L +SD + G Sbjct 1048 RSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSD----DVVGR 1103 Query 554 CGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGI 599 T V+ + P E +F++L+ E++ALG+ Sbjct 1104 V-KTYEAIVKGEPIPKPGVPE-----------SFRVLVKELQALGL 1137 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Staphylococcus aureus subsp. aureus Mu50] Sequence ID: Q932F8.1 Length: 1183 Range 1: 751 to 1140 Score:203 bits(516), Expect:3e-54, Method:Compositional matrix adjust., Identities:134/411(33%), Positives:216/411(52%), Gaps:35/411(8%) Query 203 ERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGEERRYPGGQEDRFE 262 E +N VV M+++G+N EDA++M++ V+ + S YE E R G E+ Sbjct 751 EMALGRNVVVGFMTWDGYNYEDAVIMSERLVKDDVYTSIHIEEYESEARDTKLGPEE--- 807 Query 263 IPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPPRFLEEPDD------MGG 316 ++D+ E A +LD+ G+V +V + +L+GK +P E + + G Sbjct 808 -ITRDIPNV-SESALKNLDDRGIVYIGAEVKDGDILVGKVTPKGVTELTAEERLLHAIFG 865 Query 317 LSPQKRRETSVTMRSGESGVVDTVTLMEGEDG--------SKLSKVSVRDERIPELGDKF 368 ++ R+TS+ + G G+V V + E+G ++L +V + +R +GDK Sbjct 866 EKAREVRDTSLRVPHGAGGIVLDVKVFNREEGDDTLSPGVNQLVRVYIVQKRKIHVGDKM 925 Query 369 ASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSMEGR 428 RHG KGVI + P+EDMP+ +G D+++NP +PSRM +G +LE+ G G Sbjct 926 CGRHGNKGVISKIVPEEDMPYLPDGRPIDIMLNPLGVPSRMNIGQVLELHLGMAAKNLGI 985 Query 429 RVDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVS 488 V F G +++D+ S +E+ G GK +Y G TGE + I VGV++ KL HMV Sbjct 986 HVASPVFDGANDDDVWSTIEEAGMARDGKTVLYDGRTGEPFDNRISVGVMYMLKLAHMVD 1045 Query 489 NKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFI 548 +KLHARS GP ++T+QP G+A+ GG R GEME +GAA TL+E L +SD Sbjct 1046 DKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDDTVG 1105 Query 549 HICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGI 599 + + EN+ + P+ E +F++L+ E+++LG+ Sbjct 1106 RVKTYEAIVKGENISR-----PSVPE-----------SFRVLMKELQSLGL 1140 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Staphylococcus haemolyticus JCSC1435] Sequence ID: Q4L3K3.1 Length: 1183 Range 1: 751 to 1140 Score:203 bits(516), Expect:3e-54, Method:Compositional matrix adjust., Identities:134/411(33%), Positives:216/411(52%), Gaps:35/411(8%) Query 203 ERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGEERRYPGGQEDRFE 262 E +N VV M+++G+N EDA++M++ V+ + S YE E R G E+ Sbjct 751 EMALGRNVVVGFMTWDGYNYEDAVIMSERLVKDDVYTSIHIEEYESEARDTKLGPEE--- 807 Query 263 IPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPPRFLEEPDD------MGG 316 ++D+ E A +LD+ G+V +V + +L+GK +P E + + G Sbjct 808 -ITRDIPNV-SENALKNLDDRGIVYVGAEVKDGDILVGKVTPKGVTELTAEERLLHAIFG 865 Query 317 LSPQKRRETSVTMRSGESGVVDTVTLMEGEDG--------SKLSKVSVRDERIPELGDKF 368 ++ R+TS+ + G G+V V + E+G ++L +V + +R +GDK Sbjct 866 EKAREVRDTSLRVPHGAGGIVLDVKVFNREEGDDTLSPGVNQLVRVYIVQKRKIHVGDKM 925 Query 369 ASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSMEGR 428 RHG KGVI + P+EDMP+ +G D+++NP +PSRM +G +LE+ G G Sbjct 926 CGRHGNKGVISKIVPEEDMPYLPDGRPIDIMLNPLGVPSRMNIGQVLELHLGMAAKNLGI 985 Query 429 RVDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVS 488 V F G +++D+ S +E+ G GK +Y G TGE + I VGV++ KL HMV Sbjct 986 HVASPVFDGANDDDVWSTIEEAGMARDGKTVLYDGRTGEPFDNRISVGVMYMLKLAHMVD 1045 Query 489 NKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFI 548 +KLHARS GP ++T+QP G+A+ GG R GEME +GAA TL+E L +SD Sbjct 1046 DKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDDTVG 1105 Query 549 HICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGI 599 + + EN+ + P+ E +F++L+ E+++LG+ Sbjct 1106 RVKTYEAIVKGENISR-----PSVPE-----------SFRVLMKELQSLGL 1140 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Staphylococcus aureus subsp. aureus str. Newman] Sequence ID: A6QEJ4.1 Length: 1183 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Staphylococcus aureus subsp. aureus JH1] Sequence ID: A6TZ19.1 Length: 1183 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Staphylococcus aureus subsp. aureus Mu3] Sequence ID: A7WYW7.1 Length: 1183 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Staphylococcus aureus subsp. aureus USA300_TCH1516] Sequence ID: A8YZP0.1 Length: 1183 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Staphylococcus aureus subsp. aureus NCTC 8325] Sequence ID: P47768.2 Length: 1183 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Staphylococcus aureus subsp. aureus N315] Sequence ID: P60278.1 Length: 1183 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Staphylococcus aureus subsp. aureus MW2] Sequence ID: P60279.1 Length: 1183 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Staphylococcus aureus subsp. aureus USA300] Sequence ID: Q2FJ98.2 Length: 1183 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Staphylococcus aureus RF122] Sequence ID: Q2YSB9.1 Length: 1183 >RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta [Staphylococcus aureus subsp. aureus MSSA476] Sequence ID: Q6GBU5.1 Length: 1183 Range 1: 751 to 1140 Score:203 bits(516), Expect:3e-54, Method:Compositional matrix adjust., Identities:134/411(33%), Positives:216/411(52%), Gaps:35/411(8%) Query 203 ERPAAQNFVVAVMSYEGFNIEDALVMNKASVERALARSHFFRTYEGEERRYPGGQEDRFE 262 E +N VV M+++G+N EDA++M++ V+ + S YE E R G E+ Sbjct 751 EMALGRNVVVGFMTWDGYNYEDAVIMSERLVKDDVYTSIHIEEYESEARDTKLGPEE--- 807 Query 263 IPSQDVRGARGEEAYAHLDEDGLVNPETQVDENSVLLGKTSPPRFLEEPDD------MGG 316 ++D+ E A +LD+ G+V +V + +L+GK +P E + + G Sbjct 808 -ITRDIPNV-SESALKNLDDRGIVYIGAEVKDGDILVGKVTPKGVTELTAEERLLHAIFG 865 Query 317 LSPQKRRETSVTMRSGESGVVDTVTLMEGEDG--------SKLSKVSVRDERIPELGDKF 368 ++ R+TS+ + G G+V V + E+G ++L +V + +R +GDK Sbjct 866 EKAREVRDTSLRVPHGAGGIVLDVKVFNREEGDDTLSPGVNQLVRVYIVQKRKIHVGDKM 925 Query 369 ASRHGQKGVIGHLAPQEDMPFTEEGVVPDLVVNPHALPSRMTVGHILEMIGGKLGSMEGR 428 RHG KGVI + P+EDMP+ +G D+++NP +PSRM +G +LE+ G G Sbjct 926 CGRHGNKGVISKIVPEEDMPYLPDGRPIDIMLNPLGVPSRMNIGQVLELHLGMAAKNLGI 985 Query 429 RVDGTPFLGEDEEDLRSGLEDVGFNSAGKETMYSGVTGEKIEAEIFVGVIFYQKLYHMVS 488 V F G +++D+ S +E+ G GK +Y G TGE + I VGV++ KL HMV Sbjct 986 HVASPVFDGANDDDVWSTIEEAGMARDGKTVLYDGRTGEPFDNRISVGVMYMLKLAHMVD 1045 Query 489 NKLHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAAMTLKERLLDESDREFI 548 +KLHARS GP ++T+QP G+A+ GG R GEME +GAA TL+E L +SD Sbjct 1046 DKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDDTVG 1105 Query 549 HICGNCGMTATENVEQRRVYCPNCGEETDIHEIEMSYAFKLLLDEMKALGI 599 + + EN+ + P+ E +F++L+ E+++LG+ Sbjct 1106 RVKTYEAIVKGENISR-----PSVPE-----------SFRVLMKELQSLGL 1140