RID: 0H8SKA71013 Job Title:R1A_BCHK5 P0C6T5 Replicase polyprotein Program: BLASTP Query: R1A_BCHK5 P0C6T5 REPLICASE POLYPROTEIN 1A (PP1A) (PAPAIN-LIKE PROTEASE NSP3) (PL-PRO) (3.4.19.12) (3.4.22.-) ID: lcl|Query_2518031(amino acid) Length: 1979 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Pipistrellus... NA 694008 4090 4090 100% 0.0 100.00 4481 P0C6T5.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Pipistrellus... NA 694008 4080 4080 100% 0.0 100.00 7182 P0C6W4.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Tylonycteris... NA 694007 2682 2682 100% 0.0 66.52 4434 P0C6T4.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Tylonycteris... NA 694007 2676 2676 100% 0.0 66.52 7119 P0C6W3.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Bat coronavi... NA 389230 2649 2649 100% 0.0 66.12 4441 P0C6F7.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bat coronavi... NA 389230 2645 2645 100% 0.0 66.12 7126 P0C6W1.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Betacoronavi... NA 1263720 2331 2331 100% 0.0 57.83 4391 K9N638.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Betacoronavi... NA 1263720 2326 2326 100% 0.0 57.83 7078 K9N7C7.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Bat CoV 279/... NA 389167 717 861 82% 0.0 32.57 4388 P0C6F5.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bat CoV 279/... NA 389167 715 858 82% 0.0 32.57 7079 P0C6V9.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Severe acute... NA 2697049 714 852 81% 0.0 32.46 4405 P0DTC1.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Severe acute... NA 2697049 711 849 81% 0.0 32.46 7096 P0DTD1.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Bat SARS cor... NA 442736 709 860 81% 0.0 32.42 4376 P0C6F8.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bat SARS cor... NA 442736 707 858 81% 0.0 32.42 7067 P0C6W2.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Severe acute... NA 694009 707 856 81% 0.0 32.83 4382 P0C6U8.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Bat SARS CoV... NA 349344 706 853 81% 0.0 32.38 4380 P0C6T7.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Severe acute... NA 694009 705 854 81% 0.0 32.83 7073 P0C6X7.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bat SARS CoV... NA 349344 703 850 81% 0.0 32.44 7071 P0C6W6.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Rousettus ba... NA 694006 602 775 84% 1e-177 29.57 4248 P0C6T6.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Rousettus ba... NA 694006 601 774 84% 3e-177 29.57 6930 P0C6W5.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Murine hepat... NA 11142 497 497 64% 2e-143 29.31 4468 P0C6V0.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Murine hepat... NA 11142 496 496 64% 8e-143 29.31 7176 P0C6X9.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Murine hepat... NA 76344 493 493 69% 5e-142 28.45 4416 P0C6U9.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Murine hepat... NA 76344 490 490 69% 4e-141 28.40 7124 P0C6X8.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Murine hepat... NA 11144 484 484 64% 2e-139 29.19 4474 P0C6V1.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Murine hepat... NA 11144 484 484 64% 6e-139 29.13 7180 P0C6Y0.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Bovine respi... NA 233264 482 589 76% 1e-138 29.11 4383 P0C6T9.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Bovine enter... NA 233262 482 589 76% 2e-138 29.11 4383 P0C6T8.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bovine respi... NA 233264 480 587 76% 8e-138 29.01 7094 P0C6W8.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bovine enter... NA 233262 479 587 76% 1e-137 29.01 7094 P0C6W7.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Bovine coron... NA 11132 478 585 76% 4e-137 28.75 4383 P0C6U0.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bovine coron... NA 11132 476 583 76% 1e-136 28.64 7094 P0C6W9.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Bovine coron... NA 11133 474 581 76% 4e-136 28.68 4383 P0C6U1.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bovine coron... NA 11133 473 580 76% 1e-135 28.57 7059 P0C6X0.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Human corona... NA 31631 471 576 76% 4e-135 28.54 4383 P0C6U7.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 31631 471 575 76% 8e-135 28.49 7095 P0C6X6.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Human corona... NA 443240 454 560 72% 1e-129 28.16 4441 P0C6U4.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Human corona... NA 443239 453 559 72% 4e-129 28.16 4471 P0C6U3.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Human corona... NA 443241 452 558 72% 6e-129 28.16 4421 P0C6U5.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 443240 452 558 71% 8e-129 28.16 7152 P0C6X3.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 443239 451 557 71% 1e-128 28.16 7182 P0C6X2.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 443241 450 556 71% 4e-128 28.16 7132 P0C6X4.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Human corona... NA 11137 165 241 35% 1e-40 25.92 4085 P0C6U2.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Avian infect... NA 11127 164 290 64% 3e-40 24.28 3953 P0C6V5.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 11137 164 240 35% 3e-40 25.92 6758 P0C6X1.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Scotophilus ... NA 693999 163 231 32% 4e-40 25.48 4128 P0C6F6.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Avian infect... NA 11127 163 290 64% 5e-40 24.28 6631 P0C6Y3.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Porcine tran... NA 11151 162 231 35% 9e-40 26.50 4017 P0C6V2.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Scotophilus ... NA 693999 162 230 32% 9e-40 25.48 6793 P0C6W0.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Avian infect... NA 11122 161 283 49% 2e-39 27.10 3951 P0C6V3.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Porcine tran... NA 11151 161 230 35% 2e-39 26.50 6684 P0C6Y5.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Porcine epid... NA 229032 161 245 39% 2e-39 25.08 4117 P0C6V6.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Porcine epid... NA 229032 160 244 39% 4e-39 25.08 6781 P0C6Y4.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Avian infect... NA 160235 160 282 49% 4e-39 27.10 6629 P0C6Y2.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Avian infect... NA 11122 160 282 49% 4e-39 27.10 6629 P0C6Y1.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Human corona... NA 277944 154 225 32% 2e-37 25.41 4060 P0C6U6.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 277944 154 225 32% 2e-37 25.41 6729 P0C6X5.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Feline infec... NA 33734 152 219 33% 8e-37 26.15 6709 Q98VG9.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36382 49.7 49.7 6% 1e-05 33.87 2485 P36327.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 11038 48.9 48.9 6% 2e-05 33.06 2493 P27282.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36385 48.9 48.9 6% 2e-05 33.06 2493 P36328.2 Alignments: >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Pipistrellus bat coronavirus HKU5] Sequence ID: P0C6T5.1 Length: 4481 Range 1: 852 to 2830 Score:4090 bits(10608), Expect:0.0, Method:Compositional matrix adjust., Identities:1979/1979(100%), Positives:1979/1979(100%), Gaps:0/1979(0%) Query 1 APPKGVKFGGEQTKEITAVRSVSVDYDVHPVLDALLAGSELATFTVEKDLPVKDFVDVVK 60 APPKGVKFGGEQTKEITAVRSVSVDYDVHPVLDALLAGSELATFTVEKDLPVKDFVDVVK Sbjct 852 APPKGVKFGGEQTKEITAVRSVSVDYDVHPVLDALLAGSELATFTVEKDLPVKDFVDVVK 911 Query 61 DEVIELLSKLLRGYNVDGFDLEDFADTPCYVYNAEGDLAWSSTMTFSVNPVEEVEEECDD 120 DEVIELLSKLLRGYNVDGFDLEDFADTPCYVYNAEGDLAWSSTMTFSVNPVEEVEEECDD Sbjct 912 DEVIELLSKLLRGYNVDGFDLEDFADTPCYVYNAEGDLAWSSTMTFSVNPVEEVEEECDD 971 Query 121 DYVEDEYLSEEMLVEEDENSWAAAVEAVIPMEDVQLDTLVAEIDVSEPADDVAEQASTEE 180 DYVEDEYLSEEMLVEEDENSWAAAVEAVIPMEDVQLDTLVAEIDVSEPADDVAEQASTEE Sbjct 972 DYVEDEYLSEEMLVEEDENSWAAAVEAVIPMEDVQLDTLVAEIDVSEPADDVAEQASTEE 1031 Query 181 VEVPSACVLEASQVANAAEVESCEAEVSSSIPLHEDANAAKANDCAEGMPALDSTETVSK 240 VEVPSACVLEASQVANAAEVESCEAEVSSSIPLHEDANAAKANDCAEGMPALDSTETVSK Sbjct 1032 VEVPSACVLEASQVANAAEVESCEAEVSSSIPLHEDANAAKANDCAEGMPALDSTETVSK 1091 Query 241 LSVDTPVGDVTQDDATSSNATVISEDVHTATHSKGLVAVPEVVPEKALGTSVERMRSTSE 300 LSVDTPVGDVTQDDATSSNATVISEDVHTATHSKGLVAVPEVVPEKALGTSVERMRSTSE Sbjct 1092 LSVDTPVGDVTQDDATSSNATVISEDVHTATHSKGLVAVPEVVPEKALGTSVERMRSTSE 1151 Query 301 WTVVETSLKQETAVIVKNDSSAKPQRVKKPKAENPLKNFKHIVLNNDVTLVFGDAIAVAR 360 WTVVETSLKQETAVIVKNDSSAKPQRVKKPKAENPLKNFKHIVLNNDVTLVFGDAIAVAR Sbjct 1152 WTVVETSLKQETAVIVKNDSSAKPQRVKKPKAENPLKNFKHIVLNNDVTLVFGDAIAVAR 1211 Query 361 ATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDYVNFYGPLNVGDSTLLKGHGL 420 ATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDYVNFYGPLNVGDSTLLKGHGL Sbjct 1212 ATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDYVNFYGPLNVGDSTLLKGHGL 1271 Query 421 ATGILHVVGPDARANQDIQLLKRCYKAFNKYPLVVSPLISAGIFCVEPRVSLEYLLSVVH 480 ATGILHVVGPDARANQDIQLLKRCYKAFNKYPLVVSPLISAGIFCVEPRVSLEYLLSVVH Sbjct 1272 ATGILHVVGPDARANQDIQLLKRCYKAFNKYPLVVSPLISAGIFCVEPRVSLEYLLSVVH 1331 Query 481 TKTYVVVNSEKVYNDLAAPKPPTGLTYSHEGWRGIIRNAKSFGFTCFICTDQSANAKLLK 540 TKTYVVVNSEKVYNDLAAPKPPTGLTYSHEGWRGIIRNAKSFGFTCFICTDQSANAKLLK Sbjct 1332 TKTYVVVNSEKVYNDLAAPKPPTGLTYSHEGWRGIIRNAKSFGFTCFICTDQSANAKLLK 1391 Query 541 GRGVDLTKKTQTVDGVKYYLYSSKDPLTDIITAANACKGICAMPIGYVTHGLDLAQAGQQ 600 GRGVDLTKKTQTVDGVKYYLYSSKDPLTDIITAANACKGICAMPIGYVTHGLDLAQAGQQ Sbjct 1392 GRGVDLTKKTQTVDGVKYYLYSSKDPLTDIITAANACKGICAMPIGYVTHGLDLAQAGQQ 1451 Query 601 VKKITVPYVCLLASKDQVPILNSDVAVQTPEQSFINTVIANGGYHCWHLVTGELIVKGVS 660 VKKITVPYVCLLASKDQVPILNSDVAVQTPEQSFINTVIANGGYHCWHLVTGELIVKGVS Sbjct 1452 VKKITVPYVCLLASKDQVPILNSDVAVQTPEQSFINTVIANGGYHCWHLVTGELIVKGVS 1511 Query 661 YRKLLNWSDQTICYADNKFYVVKGQIALPFDSLEKCRTYLTSRAAQQKNVDVLVTIDGVN 720 YRKLLNWSDQTICYADNKFYVVKGQIALPFDSLEKCRTYLTSRAAQQKNVDVLVTIDGVN Sbjct 1512 YRKLLNWSDQTICYADNKFYVVKGQIALPFDSLEKCRTYLTSRAAQQKNVDVLVTIDGVN 1571 Query 721 FRTVVLNNTTTYRVQLGSVFYKGSDISDTIPTEKMSGEAVYLADNLSEAEKAVLSEVYGT 780 FRTVVLNNTTTYRVQLGSVFYKGSDISDTIPTEKMSGEAVYLADNLSEAEKAVLSEVYGT Sbjct 1572 FRTVVLNNTTTYRVQLGSVFYKGSDISDTIPTEKMSGEAVYLADNLSEAEKAVLSEVYGT 1631 Query 781 ADTAFLHRYYSLLALVKKWKYTVHDGVKSLKLNSNNCYVNVTMLMLDMLKEIKFIVPALQ 840 ADTAFLHRYYSLLALVKKWKYTVHDGVKSLKLNSNNCYVNVTMLMLDMLKEIKFIVPALQ Sbjct 1632 ADTAFLHRYYSLLALVKKWKYTVHDGVKSLKLNSNNCYVNVTMLMLDMLKEIKFIVPALQ 1691 Query 841 AAYLKHKGGDSTEFIALIMAYGDCTYGEPDDASRLLHTILSKAELTTQAKMVWRQWCNVC 900 AAYLKHKGGDSTEFIALIMAYGDCTYGEPDDASRLLHTILSKAELTTQAKMVWRQWCNVC Sbjct 1692 AAYLKHKGGDSTEFIALIMAYGDCTYGEPDDASRLLHTILSKAELTTQAKMVWRQWCNVC 1751 Query 901 GVQDTTTTGLKACIYVGMNSLDELHATHEECCQCGDVRKRQLVEHNAPWLLLSGLNEAKV 960 GVQDTTTTGLKACIYVGMNSLDELHATHEECCQCGDVRKRQLVEHNAPWLLLSGLNEAKV Sbjct 1752 GVQDTTTTGLKACIYVGMNSLDELHATHEECCQCGDVRKRQLVEHNAPWLLLSGLNEAKV 1811 Query 961 MTPTSQSAGPDYTAFNVFQGVETSVGHYLHVRVKDNLLYKYDSGSLSKTSDMKCKMTDVY 1020 MTPTSQSAGPDYTAFNVFQGVETSVGHYLHVRVKDNLLYKYDSGSLSKTSDMKCKMTDVY Sbjct 1812 MTPTSQSAGPDYTAFNVFQGVETSVGHYLHVRVKDNLLYKYDSGSLSKTSDMKCKMTDVY 1871 Query 1021 YPKQRYSADCNVVVYSLDGNTWADVDPDLSAFYMKDGKYFTKKPVIEYSPATILSGSVYT 1080 YPKQRYSADCNVVVYSLDGNTWADVDPDLSAFYMKDGKYFTKKPVIEYSPATILSGSVYT Sbjct 1872 YPKQRYSADCNVVVYSLDGNTWADVDPDLSAFYMKDGKYFTKKPVIEYSPATILSGSVYT 1931 Query 1081 NSCLVGHDGTIGSDAISSSFNNLLGFDNSKPVSKKLTYSFFPDFEGDVILTEYSTYDPIY 1140 NSCLVGHDGTIGSDAISSSFNNLLGFDNSKPVSKKLTYSFFPDFEGDVILTEYSTYDPIY Sbjct 1932 NSCLVGHDGTIGSDAISSSFNNLLGFDNSKPVSKKLTYSFFPDFEGDVILTEYSTYDPIY 1991 Query 1141 KNGAMLHGKPILWVNNSKFDSALNKFNRATLRQVYDIAPVTLENKYTVLQDNQIQQVEVE 1200 KNGAMLHGKPILWVNNSKFDSALNKFNRATLRQVYDIAPVTLENKYTVLQDNQIQQVEVE Sbjct 1992 KNGAMLHGKPILWVNNSKFDSALNKFNRATLRQVYDIAPVTLENKYTVLQDNQIQQVEVE 2051 Query 1201 APKEDAKPQSPVQVAEDIDNKLPIIKCKGLKKPFVKDGYSFVNDPQGVNVIDTLGIDDLR 1260 APKEDAKPQSPVQVAEDIDNKLPIIKCKGLKKPFVKDGYSFVNDPQGVNVIDTLGIDDLR Sbjct 2052 APKEDAKPQSPVQVAEDIDNKLPIIKCKGLKKPFVKDGYSFVNDPQGVNVIDTLGIDDLR 2111 Query 1261 ALYVDRNLRLIVLKENNWSALFNIHTVEKGDLSVIAASGSITRRVKILLGASSLFAQFAS 1320 ALYVDRNLRLIVLKENNWSALFNIHTVEKGDLSVIAASGSITRRVKILLGASSLFAQFAS Sbjct 2112 ALYVDRNLRLIVLKENNWSALFNIHTVEKGDLSVIAASGSITRRVKILLGASSLFAQFAS 2171 Query 1321 VTVNVTTAMGKALGRMTRNVITNTGIIGQGFALLKMLLILPFTFWKSKNQSTVKVEVGAL 1380 VTVNVTTAMGKALGRMTRNVITNTGIIGQGFALLKMLLILPFTFWKSKNQSTVKVEVGAL Sbjct 2172 VTVNVTTAMGKALGRMTRNVITNTGIIGQGFALLKMLLILPFTFWKSKNQSTVKVEVGAL 2231 Query 1381 RTAGIVTTNVVKQCASAAYDVLVVKFKRIDWKSTLRLLFLICTTGLLLSSLYYLFLFHQV 1440 RTAGIVTTNVVKQCASAAYDVLVVKFKRIDWKSTLRLLFLICTTGLLLSSLYYLFLFHQV Sbjct 2232 RTAGIVTTNVVKQCASAAYDVLVVKFKRIDWKSTLRLLFLICTTGLLLSSLYYLFLFHQV 2291 Query 1441 LTSDVMLDGAEGMLATYRELRSYLGIHSLCDGMVEAYRNVSYDVNDFCSNRSALCNWCLI 1500 LTSDVMLDGAEGMLATYRELRSYLGIHSLCDGMVEAYRNVSYDVNDFCSNRSALCNWCLI Sbjct 2292 LTSDVMLDGAEGMLATYRELRSYLGIHSLCDGMVEAYRNVSYDVNDFCSNRSALCNWCLI 2351 Query 1501 GQDSLTRYSAFQMIQTHVTSYVINIDWVWFVMEFALAYVLYTSTFNVLLLVVSSQYFFSY 1560 GQDSLTRYSAFQMIQTHVTSYVINIDWVWFVMEFALAYVLYTSTFNVLLLVVSSQYFFSY Sbjct 2352 GQDSLTRYSAFQMIQTHVTSYVINIDWVWFVMEFALAYVLYTSTFNVLLLVVSSQYFFSY 2411 Query 1561 TGAFVNWRSYNYLVSGYFFCVTHIPLLGLVRIYNFLACLWFLRRFYNHVINGCKDTACLL 1620 TGAFVNWRSYNYLVSGYFFCVTHIPLLGLVRIYNFLACLWFLRRFYNHVINGCKDTACLL Sbjct 2412 TGAFVNWRSYNYLVSGYFFCVTHIPLLGLVRIYNFLACLWFLRRFYNHVINGCKDTACLL 2471 Query 1621 CYKRNRLTRVEASTVVCGSKRTFYIVANGGTSFCCRHNWNCVDCDTAGIGNTFICEEVAN 1680 CYKRNRLTRVEASTVVCGSKRTFYIVANGGTSFCCRHNWNCVDCDTAGIGNTFICEEVAN Sbjct 2472 CYKRNRLTRVEASTVVCGSKRTFYIVANGGTSFCCRHNWNCVDCDTAGIGNTFICEEVAN 2531 Query 1681 DLTTSLRRLVKPTDKSHYYVESVTVKDSVVQLHYSREGASCYERYPLCYFTNLDKLKFKE 1740 DLTTSLRRLVKPTDKSHYYVESVTVKDSVVQLHYSREGASCYERYPLCYFTNLDKLKFKE Sbjct 2532 DLTTSLRRLVKPTDKSHYYVESVTVKDSVVQLHYSREGASCYERYPLCYFTNLDKLKFKE 2591 Query 1741 VCKTPTGIPEHNFLIYDSSDRGQENLARSACVYYSQVLSKPMLLVDSNMVTTVGDSREIA 1800 VCKTPTGIPEHNFLIYDSSDRGQENLARSACVYYSQVLSKPMLLVDSNMVTTVGDSREIA Sbjct 2592 VCKTPTGIPEHNFLIYDSSDRGQENLARSACVYYSQVLSKPMLLVDSNMVTTVGDSREIA 2651 Query 1801 SKMLDSYVNSFISLFGVNRDKLDKLVATARDCVKRGDDFQTVIKTFTDAARGPAGVESDV 1860 SKMLDSYVNSFISLFGVNRDKLDKLVATARDCVKRGDDFQTVIKTFTDAARGPAGVESDV Sbjct 2652 SKMLDSYVNSFISLFGVNRDKLDKLVATARDCVKRGDDFQTVIKTFTDAARGPAGVESDV 2711 Query 1861 ETSSIVDALQYAYKHDLQLTTEGFNNYVPSYIKPDSVATADLGCLIDLNAASVNQTSIRN 1920 ETSSIVDALQYAYKHDLQLTTEGFNNYVPSYIKPDSVATADLGCLIDLNAASVNQTSIRN Sbjct 2712 ETSSIVDALQYAYKHDLQLTTEGFNNYVPSYIKPDSVATADLGCLIDLNAASVNQTSIRN 2771 Query 1921 ANGACIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLTTSRLRSADNILSVKFSATKLSG 1979 ANGACIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLTTSRLRSADNILSVKFSATKLSG Sbjct 2772 ANGACIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLTTSRLRSADNILSVKFSATKLSG 2830 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Pipistrellus bat coronavirus HKU5] Sequence ID: P0C6W4.1 Length: 7182 Range 1: 852 to 2830 Score:4080 bits(10582), Expect:0.0, Method:Compositional matrix adjust., Identities:1979/1979(100%), Positives:1979/1979(100%), Gaps:0/1979(0%) Query 1 APPKGVKFGGEQTKEITAVRSVSVDYDVHPVLDALLAGSELATFTVEKDLPVKDFVDVVK 60 APPKGVKFGGEQTKEITAVRSVSVDYDVHPVLDALLAGSELATFTVEKDLPVKDFVDVVK Sbjct 852 APPKGVKFGGEQTKEITAVRSVSVDYDVHPVLDALLAGSELATFTVEKDLPVKDFVDVVK 911 Query 61 DEVIELLSKLLRGYNVDGFDLEDFADTPCYVYNAEGDLAWSSTMTFSVNPVEEVEEECDD 120 DEVIELLSKLLRGYNVDGFDLEDFADTPCYVYNAEGDLAWSSTMTFSVNPVEEVEEECDD Sbjct 912 DEVIELLSKLLRGYNVDGFDLEDFADTPCYVYNAEGDLAWSSTMTFSVNPVEEVEEECDD 971 Query 121 DYVEDEYLSEEMLVEEDENSWAAAVEAVIPMEDVQLDTLVAEIDVSEPADDVAEQASTEE 180 DYVEDEYLSEEMLVEEDENSWAAAVEAVIPMEDVQLDTLVAEIDVSEPADDVAEQASTEE Sbjct 972 DYVEDEYLSEEMLVEEDENSWAAAVEAVIPMEDVQLDTLVAEIDVSEPADDVAEQASTEE 1031 Query 181 VEVPSACVLEASQVANAAEVESCEAEVSSSIPLHEDANAAKANDCAEGMPALDSTETVSK 240 VEVPSACVLEASQVANAAEVESCEAEVSSSIPLHEDANAAKANDCAEGMPALDSTETVSK Sbjct 1032 VEVPSACVLEASQVANAAEVESCEAEVSSSIPLHEDANAAKANDCAEGMPALDSTETVSK 1091 Query 241 LSVDTPVGDVTQDDATSSNATVISEDVHTATHSKGLVAVPEVVPEKALGTSVERMRSTSE 300 LSVDTPVGDVTQDDATSSNATVISEDVHTATHSKGLVAVPEVVPEKALGTSVERMRSTSE Sbjct 1092 LSVDTPVGDVTQDDATSSNATVISEDVHTATHSKGLVAVPEVVPEKALGTSVERMRSTSE 1151 Query 301 WTVVETSLKQETAVIVKNDSSAKPQRVKKPKAENPLKNFKHIVLNNDVTLVFGDAIAVAR 360 WTVVETSLKQETAVIVKNDSSAKPQRVKKPKAENPLKNFKHIVLNNDVTLVFGDAIAVAR Sbjct 1152 WTVVETSLKQETAVIVKNDSSAKPQRVKKPKAENPLKNFKHIVLNNDVTLVFGDAIAVAR 1211 Query 361 ATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDYVNFYGPLNVGDSTLLKGHGL 420 ATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDYVNFYGPLNVGDSTLLKGHGL Sbjct 1212 ATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDYVNFYGPLNVGDSTLLKGHGL 1271 Query 421 ATGILHVVGPDARANQDIQLLKRCYKAFNKYPLVVSPLISAGIFCVEPRVSLEYLLSVVH 480 ATGILHVVGPDARANQDIQLLKRCYKAFNKYPLVVSPLISAGIFCVEPRVSLEYLLSVVH Sbjct 1272 ATGILHVVGPDARANQDIQLLKRCYKAFNKYPLVVSPLISAGIFCVEPRVSLEYLLSVVH 1331 Query 481 TKTYVVVNSEKVYNDLAAPKPPTGLTYSHEGWRGIIRNAKSFGFTCFICTDQSANAKLLK 540 TKTYVVVNSEKVYNDLAAPKPPTGLTYSHEGWRGIIRNAKSFGFTCFICTDQSANAKLLK Sbjct 1332 TKTYVVVNSEKVYNDLAAPKPPTGLTYSHEGWRGIIRNAKSFGFTCFICTDQSANAKLLK 1391 Query 541 GRGVDLTKKTQTVDGVKYYLYSSKDPLTDIITAANACKGICAMPIGYVTHGLDLAQAGQQ 600 GRGVDLTKKTQTVDGVKYYLYSSKDPLTDIITAANACKGICAMPIGYVTHGLDLAQAGQQ Sbjct 1392 GRGVDLTKKTQTVDGVKYYLYSSKDPLTDIITAANACKGICAMPIGYVTHGLDLAQAGQQ 1451 Query 601 VKKITVPYVCLLASKDQVPILNSDVAVQTPEQSFINTVIANGGYHCWHLVTGELIVKGVS 660 VKKITVPYVCLLASKDQVPILNSDVAVQTPEQSFINTVIANGGYHCWHLVTGELIVKGVS Sbjct 1452 VKKITVPYVCLLASKDQVPILNSDVAVQTPEQSFINTVIANGGYHCWHLVTGELIVKGVS 1511 Query 661 YRKLLNWSDQTICYADNKFYVVKGQIALPFDSLEKCRTYLTSRAAQQKNVDVLVTIDGVN 720 YRKLLNWSDQTICYADNKFYVVKGQIALPFDSLEKCRTYLTSRAAQQKNVDVLVTIDGVN Sbjct 1512 YRKLLNWSDQTICYADNKFYVVKGQIALPFDSLEKCRTYLTSRAAQQKNVDVLVTIDGVN 1571 Query 721 FRTVVLNNTTTYRVQLGSVFYKGSDISDTIPTEKMSGEAVYLADNLSEAEKAVLSEVYGT 780 FRTVVLNNTTTYRVQLGSVFYKGSDISDTIPTEKMSGEAVYLADNLSEAEKAVLSEVYGT Sbjct 1572 FRTVVLNNTTTYRVQLGSVFYKGSDISDTIPTEKMSGEAVYLADNLSEAEKAVLSEVYGT 1631 Query 781 ADTAFLHRYYSLLALVKKWKYTVHDGVKSLKLNSNNCYVNVTMLMLDMLKEIKFIVPALQ 840 ADTAFLHRYYSLLALVKKWKYTVHDGVKSLKLNSNNCYVNVTMLMLDMLKEIKFIVPALQ Sbjct 1632 ADTAFLHRYYSLLALVKKWKYTVHDGVKSLKLNSNNCYVNVTMLMLDMLKEIKFIVPALQ 1691 Query 841 AAYLKHKGGDSTEFIALIMAYGDCTYGEPDDASRLLHTILSKAELTTQAKMVWRQWCNVC 900 AAYLKHKGGDSTEFIALIMAYGDCTYGEPDDASRLLHTILSKAELTTQAKMVWRQWCNVC Sbjct 1692 AAYLKHKGGDSTEFIALIMAYGDCTYGEPDDASRLLHTILSKAELTTQAKMVWRQWCNVC 1751 Query 901 GVQDTTTTGLKACIYVGMNSLDELHATHEECCQCGDVRKRQLVEHNAPWLLLSGLNEAKV 960 GVQDTTTTGLKACIYVGMNSLDELHATHEECCQCGDVRKRQLVEHNAPWLLLSGLNEAKV Sbjct 1752 GVQDTTTTGLKACIYVGMNSLDELHATHEECCQCGDVRKRQLVEHNAPWLLLSGLNEAKV 1811 Query 961 MTPTSQSAGPDYTAFNVFQGVETSVGHYLHVRVKDNLLYKYDSGSLSKTSDMKCKMTDVY 1020 MTPTSQSAGPDYTAFNVFQGVETSVGHYLHVRVKDNLLYKYDSGSLSKTSDMKCKMTDVY Sbjct 1812 MTPTSQSAGPDYTAFNVFQGVETSVGHYLHVRVKDNLLYKYDSGSLSKTSDMKCKMTDVY 1871 Query 1021 YPKQRYSADCNVVVYSLDGNTWADVDPDLSAFYMKDGKYFTKKPVIEYSPATILSGSVYT 1080 YPKQRYSADCNVVVYSLDGNTWADVDPDLSAFYMKDGKYFTKKPVIEYSPATILSGSVYT Sbjct 1872 YPKQRYSADCNVVVYSLDGNTWADVDPDLSAFYMKDGKYFTKKPVIEYSPATILSGSVYT 1931 Query 1081 NSCLVGHDGTIGSDAISSSFNNLLGFDNSKPVSKKLTYSFFPDFEGDVILTEYSTYDPIY 1140 NSCLVGHDGTIGSDAISSSFNNLLGFDNSKPVSKKLTYSFFPDFEGDVILTEYSTYDPIY Sbjct 1932 NSCLVGHDGTIGSDAISSSFNNLLGFDNSKPVSKKLTYSFFPDFEGDVILTEYSTYDPIY 1991 Query 1141 KNGAMLHGKPILWVNNSKFDSALNKFNRATLRQVYDIAPVTLENKYTVLQDNQIQQVEVE 1200 KNGAMLHGKPILWVNNSKFDSALNKFNRATLRQVYDIAPVTLENKYTVLQDNQIQQVEVE Sbjct 1992 KNGAMLHGKPILWVNNSKFDSALNKFNRATLRQVYDIAPVTLENKYTVLQDNQIQQVEVE 2051 Query 1201 APKEDAKPQSPVQVAEDIDNKLPIIKCKGLKKPFVKDGYSFVNDPQGVNVIDTLGIDDLR 1260 APKEDAKPQSPVQVAEDIDNKLPIIKCKGLKKPFVKDGYSFVNDPQGVNVIDTLGIDDLR Sbjct 2052 APKEDAKPQSPVQVAEDIDNKLPIIKCKGLKKPFVKDGYSFVNDPQGVNVIDTLGIDDLR 2111 Query 1261 ALYVDRNLRLIVLKENNWSALFNIHTVEKGDLSVIAASGSITRRVKILLGASSLFAQFAS 1320 ALYVDRNLRLIVLKENNWSALFNIHTVEKGDLSVIAASGSITRRVKILLGASSLFAQFAS Sbjct 2112 ALYVDRNLRLIVLKENNWSALFNIHTVEKGDLSVIAASGSITRRVKILLGASSLFAQFAS 2171 Query 1321 VTVNVTTAMGKALGRMTRNVITNTGIIGQGFALLKMLLILPFTFWKSKNQSTVKVEVGAL 1380 VTVNVTTAMGKALGRMTRNVITNTGIIGQGFALLKMLLILPFTFWKSKNQSTVKVEVGAL Sbjct 2172 VTVNVTTAMGKALGRMTRNVITNTGIIGQGFALLKMLLILPFTFWKSKNQSTVKVEVGAL 2231 Query 1381 RTAGIVTTNVVKQCASAAYDVLVVKFKRIDWKSTLRLLFLICTTGLLLSSLYYLFLFHQV 1440 RTAGIVTTNVVKQCASAAYDVLVVKFKRIDWKSTLRLLFLICTTGLLLSSLYYLFLFHQV Sbjct 2232 RTAGIVTTNVVKQCASAAYDVLVVKFKRIDWKSTLRLLFLICTTGLLLSSLYYLFLFHQV 2291 Query 1441 LTSDVMLDGAEGMLATYRELRSYLGIHSLCDGMVEAYRNVSYDVNDFCSNRSALCNWCLI 1500 LTSDVMLDGAEGMLATYRELRSYLGIHSLCDGMVEAYRNVSYDVNDFCSNRSALCNWCLI Sbjct 2292 LTSDVMLDGAEGMLATYRELRSYLGIHSLCDGMVEAYRNVSYDVNDFCSNRSALCNWCLI 2351 Query 1501 GQDSLTRYSAFQMIQTHVTSYVINIDWVWFVMEFALAYVLYTSTFNVLLLVVSSQYFFSY 1560 GQDSLTRYSAFQMIQTHVTSYVINIDWVWFVMEFALAYVLYTSTFNVLLLVVSSQYFFSY Sbjct 2352 GQDSLTRYSAFQMIQTHVTSYVINIDWVWFVMEFALAYVLYTSTFNVLLLVVSSQYFFSY 2411 Query 1561 TGAFVNWRSYNYLVSGYFFCVTHIPLLGLVRIYNFLACLWFLRRFYNHVINGCKDTACLL 1620 TGAFVNWRSYNYLVSGYFFCVTHIPLLGLVRIYNFLACLWFLRRFYNHVINGCKDTACLL Sbjct 2412 TGAFVNWRSYNYLVSGYFFCVTHIPLLGLVRIYNFLACLWFLRRFYNHVINGCKDTACLL 2471 Query 1621 CYKRNRLTRVEASTVVCGSKRTFYIVANGGTSFCCRHNWNCVDCDTAGIGNTFICEEVAN 1680 CYKRNRLTRVEASTVVCGSKRTFYIVANGGTSFCCRHNWNCVDCDTAGIGNTFICEEVAN Sbjct 2472 CYKRNRLTRVEASTVVCGSKRTFYIVANGGTSFCCRHNWNCVDCDTAGIGNTFICEEVAN 2531 Query 1681 DLTTSLRRLVKPTDKSHYYVESVTVKDSVVQLHYSREGASCYERYPLCYFTNLDKLKFKE 1740 DLTTSLRRLVKPTDKSHYYVESVTVKDSVVQLHYSREGASCYERYPLCYFTNLDKLKFKE Sbjct 2532 DLTTSLRRLVKPTDKSHYYVESVTVKDSVVQLHYSREGASCYERYPLCYFTNLDKLKFKE 2591 Query 1741 VCKTPTGIPEHNFLIYDSSDRGQENLARSACVYYSQVLSKPMLLVDSNMVTTVGDSREIA 1800 VCKTPTGIPEHNFLIYDSSDRGQENLARSACVYYSQVLSKPMLLVDSNMVTTVGDSREIA Sbjct 2592 VCKTPTGIPEHNFLIYDSSDRGQENLARSACVYYSQVLSKPMLLVDSNMVTTVGDSREIA 2651 Query 1801 SKMLDSYVNSFISLFGVNRDKLDKLVATARDCVKRGDDFQTVIKTFTDAARGPAGVESDV 1860 SKMLDSYVNSFISLFGVNRDKLDKLVATARDCVKRGDDFQTVIKTFTDAARGPAGVESDV Sbjct 2652 SKMLDSYVNSFISLFGVNRDKLDKLVATARDCVKRGDDFQTVIKTFTDAARGPAGVESDV 2711 Query 1861 ETSSIVDALQYAYKHDLQLTTEGFNNYVPSYIKPDSVATADLGCLIDLNAASVNQTSIRN 1920 ETSSIVDALQYAYKHDLQLTTEGFNNYVPSYIKPDSVATADLGCLIDLNAASVNQTSIRN Sbjct 2712 ETSSIVDALQYAYKHDLQLTTEGFNNYVPSYIKPDSVATADLGCLIDLNAASVNQTSIRN 2771 Query 1921 ANGACIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLTTSRLRSADNILSVKFSATKLSG 1979 ANGACIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLTTSRLRSADNILSVKFSATKLSG Sbjct 2772 ANGACIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLTTSRLRSADNILSVKFSATKLSG 2830 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinase; Short=PL-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Tylonycteris bat coronavirus HKU4] Sequence ID: P0C6T4.1 Length: 4434 Range 1: 849 to 2784 Score:2682 bits(6951), Expect:0.0, Method:Compositional matrix adjust., Identities:1319/1983(67%), Positives:1593/1983(80%), Gaps:52/1983(2%) Query 2 PPKGVKFGGEQTKEITAVRSVSVDYDVHPVLDALLAGSELATFTVEKDLPVKDFVDVVKD 61 P K V FG T E+TA RSVS+ YD+HPVLDALL+ S+LATFTVEKDL V+DFVDV+KD Sbjct 849 PSKKVTFGDVNTVEVTAYRSVSITYDIHPVLDALLSSSKLATFTVEKDLLVEDFVDVIKD 908 Query 62 EVIELLSKLLRGYNVDGFDLEDFADTPCYVYNAEGDLAWSSTMTFSVNPVEEVEEECDDD 121 EV+ LL+ LLRGY++DGFD+EDF D PCYVYN +GD AWSS MTFS+NPVE+VEE ++ Sbjct 909 EVLTLLTPLLRGYDIDGFDVEDFIDVPCYVYNQDGDCAWSSNMTFSINPVEDVEEV--EE 966 Query 122 YVEDEYLSEEMLVEEDENSWAAAVEAVIPMEDVQLDTLVAEIDVSEPADDVAEQASTEEV 181 ++ED+YLS+E+ + +DE +WA AVE V+P++D+ LVAEI++ E D + + E V Sbjct 967 FIEDDYLSDELPIADDEEAWARAVEEVMPLDDI----LVAEIELEE---DPPLETALESV 1019 Query 182 EVPSACVLEASQVANAAEVESCEAEVSSSIPLHEDANAAKANDCAEGMPALDSTETVSKL 241 E A V+E ++ A VES ++ S+S + E+ + K M + T+ V +L Sbjct 1020 E---AEVVETAE-AQEPSVESIDSTPSTSTVVGENDLSVKP------MSRVAETDDVLEL 1069 Query 242 S---VDTPVGDVTQDDATSSNATVISEDVHTATHSK--GLVAVPEVVPEKALGTSVERMR 296 V PV DVT +++ D+ + ++ G+ ++P + ++A V ++ Sbjct 1070 ETAVVGGPVSDVT---------AIVTNDIVSVEQAQQCGVSSLP--IQDEASENQVHQVS 1118 Query 297 STSEWTVVETSLKQETAVIVKNDSSAKPQRVKKPKAENPLKNFKHIVLNNDVTLVFGDAI 356 ++ + K E IV+ KP+R +K K + L +KH V+NN VTLV GDAI Sbjct 1119 DLQGNELLCSETKVE---IVQPRQDLKPRRSRKSKVD--LSKYKHTVINNSVTLVLGDAI 1173 Query 357 AVARATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDYVNFYGPLNVGDSTLLK 416 +A CILVNAAN HLKHGGGIA I++ASGG VQ ESD+Y++ GPL+VGDS LLK Sbjct 1174 QIASLLPKCILVNAANRHLKHGGGIAGVINKASGGDVQEESDEYISNNGPLHVGDSVLLK 1233 Query 417 GHGLATGILHVVGPDARANQDIQLLKRCYKAFNKYPLVVSPLISAGIFCVEPRVSLEYLL 476 GHGLA ILHVVGPDAR N+D LLKRCYKAFNK+ +VV+PLISAGIF V+P+VS EYLL Sbjct 1234 GHGLADAILHVVGPDARNNEDAALLKRCYKAFNKHTIVVTPLISAGIFSVDPKVSFEYLL 1293 Query 477 SVVHTKTYVVVNSEKVYNDLAAPKPPTGLTYSHEGWRGIIRNAKSFGFTCFICTDQSANA 536 + V T TYVVVN+E +YN LA P P GL YS EGWRG +R AK++GFTCFICT+ SAN Sbjct 1294 ANVTTTTYVVVNNEDIYNTLATPSKPDGLVYSFEGWRGTVRTAKNYGFTCFICTEYSANV 1353 Query 537 KLLKGRGVDLTKKTQTVDGVKYYLYSSKDPLTDIITAANACKGICAMPIGYVTHGLDLAQ 596 K L+ +GVD TKK QTVDGV YYLYS++D LTD+I AAN C GICAMP GYVTHGLDLAQ Sbjct 1354 KFLRTKGVDTTKKIQTVDGVSYYLYSARDALTDVIAAANGCSGICAMPFGYVTHGLDLAQ 1413 Query 597 AGQQVKKITVPYVCLLASKDQVPILNSDVAVQTPEQSFINTVIANGGYHCWHLVTGELIV 656 +G V+++ VPYVCLLASK+Q+PI+NSDVA+QTPE +FIN V +NGGYH WHLV+G+LIV Sbjct 1414 SGNYVRQVKVPYVCLLASKEQIPIMNSDVAIQTPETAFINNVTSNGGYHSWHLVSGDLIV 1473 Query 657 KGVSYRKLLNWSDQTICYADNKFYVVKGQIALPFDSLEKCRTYLTSRAAQQKNVDVLVTI 716 K V Y+KLL+WS QTICYADNKFYVVK +ALPF LE CR YLTSRAAQQ N++VLVTI Sbjct 1474 KDVCYKKLLHWSGQTICYADNKFYVVKNDVALPFSDLEACRAYLTSRAAQQVNIEVLVTI 1533 Query 717 DGVNFRTVVLNNTTTYRVQLGSVFYKGSDISDTIPTEKMSGEAVYLADNLSEAEKAVLSE 776 DGVNFRTV+LN+TTT+R QLG+ FYKG DISD PT KM GE++++ADNLSE+EK VL E Sbjct 1534 DGVNFRTVILNDTTTFRKQLGATFYKGVDISDAFPTVKMGGESLFVADNLSESEKVVLKE 1593 Query 777 VYGTADTAFLHRYYSLLALVKKWKYTVHDGVKSLKLNSNNCYVNVTMLMLDMLKEIKFIV 836 YGT+D FL RYYSL LV++WK+ VHDGVKSLKL++ NCY+N T++M+DML +IKF+V Sbjct 1594 YYGTSDVTFLQRYYSLQPLVQQWKFVVHDGVKSLKLSNYNCYINATIMMIDMLHDIKFVV 1653 Query 837 PALQAAYLKHKGGDSTEFIALIMAYGDCTYGEPDDASRLLHTILSKAELTTQAKMVWRQW 896 PALQ AYL++KGGD +F+ALIMAYGDCT+ PDD ++LLHT+L+KAELT AKMVWR+W Sbjct 1654 PALQNAYLRYKGGDPYDFLALIMAYGDCTFDNPDDEAKLLHTLLAKAELTVSAKMVWREW 1713 Query 897 CNVCGVQDTTTTGLKACIYVGMNSLDELHATHEECCQCGDVRKRQLVEHNAPWLLLSGLN 956 C VCG++D TG++AC+Y G+NS++EL + E C CG V+ RQLVEH+APWLL+SGLN Sbjct 1714 CTVCGIRDIEYTGMRACVYAGVNSMEELQSVFNETCVCGSVKHRQLVEHSAPWLLVSGLN 1773 Query 957 EAKVMTPTSQSAGPDYTAFNVFQGVETSVGHYLHVRVKDNLLYKYDSGSLSKTSDMKCKM 1016 E KV T T P Y AFNVFQGVETSVGHY+H+RVKD L YKYDSGSL+KTSDMKCKM Sbjct 1774 EVKVSTSTD----PIYRAFNVFQGVETSVGHYVHIRVKDGLFYKYDSGSLTKTSDMKCKM 1829 Query 1017 TDVYYPKQRYSADCNVVVYSLDGNTWADVDPDLSAFYMKDGKYFTKKPVIEYSPATILSG 1076 T V+YP RY+ADCNVVVY LDG T +V+PDLS +YMKDGKY+T KP I+YSPATIL G Sbjct 1830 TSVWYPTVRYTADCNVVVYDLDGVTKVEVNPDLSNYYMKDGKYYTSKPTIKYSPATILPG 1889 Query 1077 SVYTNSCLVGHDGTIGSDAISSSFNNLLGFDNSKPVSKKLTYSFFPDFEGDVILTEYSTY 1136 SVY+NSCLVG DGT GSD IS FN+LLGFD +KP+SKKLTYS P+ +GDV+L+E+S Y Sbjct 1890 SVYSNSCLVGVDGTPGSDTISKFFNDLLGFDETKPISKKLTYSLLPNEDGDVLLSEFSNY 1949 Query 1137 DPIYKNGAMLHGKPILWVNNSKFDSALNKFNRATLRQVYDIAPVTLENKYTVLQDNQIQQ 1196 +P+YK G ML GKPILWVNN DSALNK NRA+LRQ+YD+AP+ L+NKYTVLQDN Q Sbjct 1950 NPVYKKGVMLKGKPILWVNNGVCDSALNKPNRASLRQLYDVAPIVLDNKYTVLQDNTSQL 2009 Query 1197 VEVEAPKEDAKPQSPVQVAEDIDNKLPIIKCKGLKKPFVKDGYSFVNDPQGVNVIDTLGI 1256 VE P D P + ++ E +KCKGL KPFVK +SFVNDP GV V+DTLG+ Sbjct 2010 VEHNVPVVDDVPITTRKLIE--------VKCKGLNKPFVKGNFSFVNDPNGVTVVDTLGL 2061 Query 1257 DDLRALYVDRNLRLIVLKENNWSALFNIHTVEKGDLSVIAASGSITRRVKILLGASSLFA 1316 +LRALYVD N R IVL++NNWS+LF +HTVE GDL ++AA GS+TRR ++LLGASSLFA Sbjct 2062 TELRALYVDINTRYIVLRDNNWSSLFKLHTVESGDLQIVAAGGSVTRRARVLLGASSLFA 2121 Query 1317 QFASVTVNVTTAMGKALGRMTRNVITNTGIIGQGFALLKMLLILPFTFWKSKNQSTVKVE 1376 FA +TV TTA K GR + N G++ F LKML LPF + K Q TV + Sbjct 2122 SFAKITVTATTAACKTAGRGFCKFVVNYGVLQNMFVFLKMLFFLPFNYLWPKKQPTVDIG 2181 Query 1377 VGALRTAGIVTTNVVKQCASAAYDVLVVKFKRIDWKSTLRLLFLICTTGLLLSSLYYLFL 1436 V LRTAGIVTTN+VKQC +AAY +L+ KFKR+DWK+TLRL L+CTT LLLSS+Y+L L Sbjct 2182 VSGLRTAGIVTTNIVKQCGTAAYYMLLGKFKRVDWKATLRLFLLLCTTILLLSSIYHLVL 2241 Query 1437 FHQVLTSDVMLDGAEGMLATYRELRSYLGIHSLCDGMVEAYRNVSYDVNDFCSNRSALCN 1496 F+QVL+SDVML+ A G+LA Y+E+RSYLGI +LCDG+V YRN S+DV +FCSNRS LC Sbjct 2242 FNQVLSSDVMLEDATGILAIYKEVRSYLGIRTLCDGLVVEYRNTSFDVMEFCSNRSVLCQ 2301 Query 1497 WCLIGQDSLTRYSAFQMIQTHVTSYVINIDWVWFVMEFALAYVLYTSTFNVLLLVVSSQY 1556 WCLIGQDSLTRYSA QM+QTH+TSYV+NIDW+WF +EF LAYVLYTS+FNVLLLVV++QY Sbjct 2302 WCLIGQDSLTRYSALQMLQTHITSYVLNIDWIWFALEFFLAYVLYTSSFNVLLLVVTAQY 2361 Query 1557 FFSYTGAFVNWRSYNYLVSGYFFCVTHIPLLGLVRIYNFLACLWFLRRFYNHVINGCKDT 1616 FF+YT AFVNWR+YNY+VSG FF VTHIPL GLVR+YNFLACLWFLR+FY+HVINGCKDT Sbjct 2362 FFAYTSAFVNWRAYNYIVSGLFFLVTHIPLHGLVRVYNFLACLWFLRKFYSHVINGCKDT 2421 Query 1617 ACLLCYKRNRLTRVEASTVVCGSKRTFYIVANGGTSFCCRHNWNCVDCDTAGIGNTFICE 1676 ACLLCYKRNRLTRVEAST+VCG+KRTFYI ANGGTS+CC+HNWNCV+CDTAG+GNTFIC Sbjct 2422 ACLLCYKRNRLTRVEASTIVCGTKRTFYIAANGGTSYCCKHNWNCVECDTAGVGNTFICT 2481 Query 1677 EVANDLTTSLRRLVKPTDKSHYYVESVTVKDSVVQLHYSREGASCYERYPLCYFTNLDKL 1736 EVANDLTT+LRRL+KPTD+SHYYV+SV VKD+VV+LHY+R+G+SCYERYPLCYFTNL+KL Sbjct 2482 EVANDLTTTLRRLIKPTDQSHYYVDSVVVKDAVVELHYNRDGSSCYERYPLCYFTNLEKL 2541 Query 1737 KFKEVCKTPTGIPEHNFLIYDSSDRGQENLARSACVYYSQVLSKPMLLVDSNMVTTVGDS 1796 KFKEVCKTPTGIPEHNFLIYD++DRGQENLARSACVYYSQVL KPMLLVD N+VTTVGDS Sbjct 2542 KFKEVCKTPTGIPEHNFLIYDTNDRGQENLARSACVYYSQVLCKPMLLVDVNLVTTVGDS 2601 Query 1797 REIASKMLDSYVNSFISLFGVNRDKLDKLVATARDCVKRGDDFQTVIKTFTDAARGPAGV 1856 REIA KMLDS++NSFISLF V+RDKL+KL+ TARDCV+RGDDFQ V+KTFTDAARG AGV Sbjct 2602 REIAIKMLDSFINSFISLFSVSRDKLEKLINTARDCVRRGDDFQNVLKTFTDAARGHAGV 2661 Query 1857 ESDVETSSIVDALQYAYKHDLQLTTEGFNNYVPSYIKPDSVATADLGCLIDLNAASVNQT 1916 ESDVET+ +VDALQYA+K+D+QLTTE +NNYVP YIKPDS+ T DLGCLIDL AASVNQT Sbjct 2662 ESDVETTMVVDALQYAHKNDIQLTTECYNNYVPGYIKPDSINTLDLGCLIDLKAASVNQT 2721 Query 1917 SIRNANGACIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLTTSRLRSADNILSVKFSATK 1976 S+RNANGAC+WNS DYMKLSDS KRQIRIACRKCNIPFRLTTS+LR+ADNILSVKFSATK Sbjct 2722 SMRNANGACVWNSGDYMKLSDSFKRQIRIACRKCNIPFRLTTSKLRAADNILSVKFSATK 2781 Query 1977 LSG 1979 + G Sbjct 2782 IVG 2784 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Tylonycteris bat coronavirus HKU4] Sequence ID: P0C6W3.1 Length: 7119 Range 1: 849 to 2784 Score:2676 bits(6937), Expect:0.0, Method:Compositional matrix adjust., Identities:1319/1983(67%), Positives:1593/1983(80%), Gaps:52/1983(2%) Query 2 PPKGVKFGGEQTKEITAVRSVSVDYDVHPVLDALLAGSELATFTVEKDLPVKDFVDVVKD 61 P K V FG T E+TA RSVS+ YD+HPVLDALL+ S+LATFTVEKDL V+DFVDV+KD Sbjct 849 PSKKVTFGDVNTVEVTAYRSVSITYDIHPVLDALLSSSKLATFTVEKDLLVEDFVDVIKD 908 Query 62 EVIELLSKLLRGYNVDGFDLEDFADTPCYVYNAEGDLAWSSTMTFSVNPVEEVEEECDDD 121 EV+ LL+ LLRGY++DGFD+EDF D PCYVYN +GD AWSS MTFS+NPVE+VEE ++ Sbjct 909 EVLTLLTPLLRGYDIDGFDVEDFIDVPCYVYNQDGDCAWSSNMTFSINPVEDVEEV--EE 966 Query 122 YVEDEYLSEEMLVEEDENSWAAAVEAVIPMEDVQLDTLVAEIDVSEPADDVAEQASTEEV 181 ++ED+YLS+E+ + +DE +WA AVE V+P++D+ LVAEI++ E D + + E V Sbjct 967 FIEDDYLSDELPIADDEEAWARAVEEVMPLDDI----LVAEIELEE---DPPLETALESV 1019 Query 182 EVPSACVLEASQVANAAEVESCEAEVSSSIPLHEDANAAKANDCAEGMPALDSTETVSKL 241 E A V+E ++ A VES ++ S+S + E+ + K M + T+ V +L Sbjct 1020 E---AEVVETAE-AQEPSVESIDSTPSTSTVVGENDLSVKP------MSRVAETDDVLEL 1069 Query 242 S---VDTPVGDVTQDDATSSNATVISEDVHTATHSK--GLVAVPEVVPEKALGTSVERMR 296 V PV DVT +++ D+ + ++ G+ ++P + ++A V ++ Sbjct 1070 ETAVVGGPVSDVT---------AIVTNDIVSVEQAQQCGVSSLP--IQDEASENQVHQVS 1118 Query 297 STSEWTVVETSLKQETAVIVKNDSSAKPQRVKKPKAENPLKNFKHIVLNNDVTLVFGDAI 356 ++ + K E IV+ KP+R +K K + L +KH V+NN VTLV GDAI Sbjct 1119 DLQGNELLCSETKVE---IVQPRQDLKPRRSRKSKVD--LSKYKHTVINNSVTLVLGDAI 1173 Query 357 AVARATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDYVNFYGPLNVGDSTLLK 416 +A CILVNAAN HLKHGGGIA I++ASGG VQ ESD+Y++ GPL+VGDS LLK Sbjct 1174 QIASLLPKCILVNAANRHLKHGGGIAGVINKASGGDVQEESDEYISNNGPLHVGDSVLLK 1233 Query 417 GHGLATGILHVVGPDARANQDIQLLKRCYKAFNKYPLVVSPLISAGIFCVEPRVSLEYLL 476 GHGLA ILHVVGPDAR N+D LLKRCYKAFNK+ +VV+PLISAGIF V+P+VS EYLL Sbjct 1234 GHGLADAILHVVGPDARNNEDAALLKRCYKAFNKHTIVVTPLISAGIFSVDPKVSFEYLL 1293 Query 477 SVVHTKTYVVVNSEKVYNDLAAPKPPTGLTYSHEGWRGIIRNAKSFGFTCFICTDQSANA 536 + V T TYVVVN+E +YN LA P P GL YS EGWRG +R AK++GFTCFICT+ SAN Sbjct 1294 ANVTTTTYVVVNNEDIYNTLATPSKPDGLVYSFEGWRGTVRTAKNYGFTCFICTEYSANV 1353 Query 537 KLLKGRGVDLTKKTQTVDGVKYYLYSSKDPLTDIITAANACKGICAMPIGYVTHGLDLAQ 596 K L+ +GVD TKK QTVDGV YYLYS++D LTD+I AAN C GICAMP GYVTHGLDLAQ Sbjct 1354 KFLRTKGVDTTKKIQTVDGVSYYLYSARDALTDVIAAANGCSGICAMPFGYVTHGLDLAQ 1413 Query 597 AGQQVKKITVPYVCLLASKDQVPILNSDVAVQTPEQSFINTVIANGGYHCWHLVTGELIV 656 +G V+++ VPYVCLLASK+Q+PI+NSDVA+QTPE +FIN V +NGGYH WHLV+G+LIV Sbjct 1414 SGNYVRQVKVPYVCLLASKEQIPIMNSDVAIQTPETAFINNVTSNGGYHSWHLVSGDLIV 1473 Query 657 KGVSYRKLLNWSDQTICYADNKFYVVKGQIALPFDSLEKCRTYLTSRAAQQKNVDVLVTI 716 K V Y+KLL+WS QTICYADNKFYVVK +ALPF LE CR YLTSRAAQQ N++VLVTI Sbjct 1474 KDVCYKKLLHWSGQTICYADNKFYVVKNDVALPFSDLEACRAYLTSRAAQQVNIEVLVTI 1533 Query 717 DGVNFRTVVLNNTTTYRVQLGSVFYKGSDISDTIPTEKMSGEAVYLADNLSEAEKAVLSE 776 DGVNFRTV+LN+TTT+R QLG+ FYKG DISD PT KM GE++++ADNLSE+EK VL E Sbjct 1534 DGVNFRTVILNDTTTFRKQLGATFYKGVDISDAFPTVKMGGESLFVADNLSESEKVVLKE 1593 Query 777 VYGTADTAFLHRYYSLLALVKKWKYTVHDGVKSLKLNSNNCYVNVTMLMLDMLKEIKFIV 836 YGT+D FL RYYSL LV++WK+ VHDGVKSLKL++ NCY+N T++M+DML +IKF+V Sbjct 1594 YYGTSDVTFLQRYYSLQPLVQQWKFVVHDGVKSLKLSNYNCYINATIMMIDMLHDIKFVV 1653 Query 837 PALQAAYLKHKGGDSTEFIALIMAYGDCTYGEPDDASRLLHTILSKAELTTQAKMVWRQW 896 PALQ AYL++KGGD +F+ALIMAYGDCT+ PDD ++LLHT+L+KAELT AKMVWR+W Sbjct 1654 PALQNAYLRYKGGDPYDFLALIMAYGDCTFDNPDDEAKLLHTLLAKAELTVSAKMVWREW 1713 Query 897 CNVCGVQDTTTTGLKACIYVGMNSLDELHATHEECCQCGDVRKRQLVEHNAPWLLLSGLN 956 C VCG++D TG++AC+Y G+NS++EL + E C CG V+ RQLVEH+APWLL+SGLN Sbjct 1714 CTVCGIRDIEYTGMRACVYAGVNSMEELQSVFNETCVCGSVKHRQLVEHSAPWLLVSGLN 1773 Query 957 EAKVMTPTSQSAGPDYTAFNVFQGVETSVGHYLHVRVKDNLLYKYDSGSLSKTSDMKCKM 1016 E KV T T P Y AFNVFQGVETSVGHY+H+RVKD L YKYDSGSL+KTSDMKCKM Sbjct 1774 EVKVSTSTD----PIYRAFNVFQGVETSVGHYVHIRVKDGLFYKYDSGSLTKTSDMKCKM 1829 Query 1017 TDVYYPKQRYSADCNVVVYSLDGNTWADVDPDLSAFYMKDGKYFTKKPVIEYSPATILSG 1076 T V+YP RY+ADCNVVVY LDG T +V+PDLS +YMKDGKY+T KP I+YSPATIL G Sbjct 1830 TSVWYPTVRYTADCNVVVYDLDGVTKVEVNPDLSNYYMKDGKYYTSKPTIKYSPATILPG 1889 Query 1077 SVYTNSCLVGHDGTIGSDAISSSFNNLLGFDNSKPVSKKLTYSFFPDFEGDVILTEYSTY 1136 SVY+NSCLVG DGT GSD IS FN+LLGFD +KP+SKKLTYS P+ +GDV+L+E+S Y Sbjct 1890 SVYSNSCLVGVDGTPGSDTISKFFNDLLGFDETKPISKKLTYSLLPNEDGDVLLSEFSNY 1949 Query 1137 DPIYKNGAMLHGKPILWVNNSKFDSALNKFNRATLRQVYDIAPVTLENKYTVLQDNQIQQ 1196 +P+YK G ML GKPILWVNN DSALNK NRA+LRQ+YD+AP+ L+NKYTVLQDN Q Sbjct 1950 NPVYKKGVMLKGKPILWVNNGVCDSALNKPNRASLRQLYDVAPIVLDNKYTVLQDNTSQL 2009 Query 1197 VEVEAPKEDAKPQSPVQVAEDIDNKLPIIKCKGLKKPFVKDGYSFVNDPQGVNVIDTLGI 1256 VE P D P + ++ E +KCKGL KPFVK +SFVNDP GV V+DTLG+ Sbjct 2010 VEHNVPVVDDVPITTRKLIE--------VKCKGLNKPFVKGNFSFVNDPNGVTVVDTLGL 2061 Query 1257 DDLRALYVDRNLRLIVLKENNWSALFNIHTVEKGDLSVIAASGSITRRVKILLGASSLFA 1316 +LRALYVD N R IVL++NNWS+LF +HTVE GDL ++AA GS+TRR ++LLGASSLFA Sbjct 2062 TELRALYVDINTRYIVLRDNNWSSLFKLHTVESGDLQIVAAGGSVTRRARVLLGASSLFA 2121 Query 1317 QFASVTVNVTTAMGKALGRMTRNVITNTGIIGQGFALLKMLLILPFTFWKSKNQSTVKVE 1376 FA +TV TTA K GR + N G++ F LKML LPF + K Q TV + Sbjct 2122 SFAKITVTATTAACKTAGRGFCKFVVNYGVLQNMFVFLKMLFFLPFNYLWPKKQPTVDIG 2181 Query 1377 VGALRTAGIVTTNVVKQCASAAYDVLVVKFKRIDWKSTLRLLFLICTTGLLLSSLYYLFL 1436 V LRTAGIVTTN+VKQC +AAY +L+ KFKR+DWK+TLRL L+CTT LLLSS+Y+L L Sbjct 2182 VSGLRTAGIVTTNIVKQCGTAAYYMLLGKFKRVDWKATLRLFLLLCTTILLLSSIYHLVL 2241 Query 1437 FHQVLTSDVMLDGAEGMLATYRELRSYLGIHSLCDGMVEAYRNVSYDVNDFCSNRSALCN 1496 F+QVL+SDVML+ A G+LA Y+E+RSYLGI +LCDG+V YRN S+DV +FCSNRS LC Sbjct 2242 FNQVLSSDVMLEDATGILAIYKEVRSYLGIRTLCDGLVVEYRNTSFDVMEFCSNRSVLCQ 2301 Query 1497 WCLIGQDSLTRYSAFQMIQTHVTSYVINIDWVWFVMEFALAYVLYTSTFNVLLLVVSSQY 1556 WCLIGQDSLTRYSA QM+QTH+TSYV+NIDW+WF +EF LAYVLYTS+FNVLLLVV++QY Sbjct 2302 WCLIGQDSLTRYSALQMLQTHITSYVLNIDWIWFALEFFLAYVLYTSSFNVLLLVVTAQY 2361 Query 1557 FFSYTGAFVNWRSYNYLVSGYFFCVTHIPLLGLVRIYNFLACLWFLRRFYNHVINGCKDT 1616 FF+YT AFVNWR+YNY+VSG FF VTHIPL GLVR+YNFLACLWFLR+FY+HVINGCKDT Sbjct 2362 FFAYTSAFVNWRAYNYIVSGLFFLVTHIPLHGLVRVYNFLACLWFLRKFYSHVINGCKDT 2421 Query 1617 ACLLCYKRNRLTRVEASTVVCGSKRTFYIVANGGTSFCCRHNWNCVDCDTAGIGNTFICE 1676 ACLLCYKRNRLTRVEAST+VCG+KRTFYI ANGGTS+CC+HNWNCV+CDTAG+GNTFIC Sbjct 2422 ACLLCYKRNRLTRVEASTIVCGTKRTFYIAANGGTSYCCKHNWNCVECDTAGVGNTFICT 2481 Query 1677 EVANDLTTSLRRLVKPTDKSHYYVESVTVKDSVVQLHYSREGASCYERYPLCYFTNLDKL 1736 EVANDLTT+LRRL+KPTD+SHYYV+SV VKD+VV+LHY+R+G+SCYERYPLCYFTNL+KL Sbjct 2482 EVANDLTTTLRRLIKPTDQSHYYVDSVVVKDAVVELHYNRDGSSCYERYPLCYFTNLEKL 2541 Query 1737 KFKEVCKTPTGIPEHNFLIYDSSDRGQENLARSACVYYSQVLSKPMLLVDSNMVTTVGDS 1796 KFKEVCKTPTGIPEHNFLIYD++DRGQENLARSACVYYSQVL KPMLLVD N+VTTVGDS Sbjct 2542 KFKEVCKTPTGIPEHNFLIYDTNDRGQENLARSACVYYSQVLCKPMLLVDVNLVTTVGDS 2601 Query 1797 REIASKMLDSYVNSFISLFGVNRDKLDKLVATARDCVKRGDDFQTVIKTFTDAARGPAGV 1856 REIA KMLDS++NSFISLF V+RDKL+KL+ TARDCV+RGDDFQ V+KTFTDAARG AGV Sbjct 2602 REIAIKMLDSFINSFISLFSVSRDKLEKLINTARDCVRRGDDFQNVLKTFTDAARGHAGV 2661 Query 1857 ESDVETSSIVDALQYAYKHDLQLTTEGFNNYVPSYIKPDSVATADLGCLIDLNAASVNQT 1916 ESDVET+ +VDALQYA+K+D+QLTTE +NNYVP YIKPDS+ T DLGCLIDL AASVNQT Sbjct 2662 ESDVETTMVVDALQYAHKNDIQLTTECYNNYVPGYIKPDSINTLDLGCLIDLKAASVNQT 2721 Query 1917 SIRNANGACIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLTTSRLRSADNILSVKFSATK 1976 S+RNANGAC+WNS DYMKLSDS KRQIRIACRKCNIPFRLTTS+LR+ADNILSVKFSATK Sbjct 2722 SMRNANGACVWNSGDYMKLSDSFKRQIRIACRKCNIPFRLTTSKLRAADNILSVKFSATK 2781 Query 1977 LSG 1979 + G Sbjct 2782 IVG 2784 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bat coronavirus (BtCoV/133/2005)] Sequence ID: P0C6F7.1 Length: 4441 Range 1: 849 to 2791 Score:2649 bits(6867), Expect:0.0, Method:Compositional matrix adjust., Identities:1319/1995(66%), Positives:1594/1995(79%), Gaps:69/1995(3%) Query 2 PPKGVKFGGEQTKEITAVRSVSVDYDVHPVLDALLAGSELATFTVEKDLPVKDFVDVVKD 61 P K V FG T E+TA RSVS+ YD+HPVLDALL+ S+LATFTVEKDL V+DFVDV+KD Sbjct 849 PSKKVTFGDVNTVEVTAYRSVSITYDIHPVLDALLSSSKLATFTVEKDLLVEDFVDVIKD 908 Query 62 EVIELLSKLLRGYNVDGFDLEDFADTPCYVYNAEGDLAWSSTMTFSVNPVEEVEEECDDD 121 EV+ LL+ LLRGY++DGFD+EDF D PCYVYN +GD AWSS MTFS+NPVE+VEE ++ Sbjct 909 EVLTLLTPLLRGYDIDGFDVEDFIDVPCYVYNQDGDCAWSSNMTFSINPVEDVEEV--EE 966 Query 122 YVEDEYLSEEMLVEEDENSWAAAVEAVIPMEDVQLDTLVAEIDVSE--PADDVAEQASTE 179 ++ED+YLS+E+ + +DE +W AVE V+P++D+ LVAEI++ E P + E E Sbjct 967 FIEDDYLSDELPIADDEEAWTRAVEEVMPLDDI----LVAEIELEEDLPLETALESVEAE 1022 Query 180 EVEVPS--ACVLEASQVANAAEVESCEAEVSSSIPLHEDANAAKANDCAEGMPALDSTET 237 E S CV+E ++ A VES ++ S+S + E+ + K P ET Sbjct 1023 VGESISDELCVVETAK-AQEPSVESTDSTPSTSTVVSENDLSVK--------PMSRVAET 1073 Query 238 VSKLSVDT-----PVGDVTQDDATSSNATVISEDVHTATHSK--GLVAVPEVVPEKALGT 290 L V+T PV DVT A+V++ D+ + ++ G+ ++P + ++A Sbjct 1074 GDVLEVETAVVGGPVSDVT--------ASVVTNDIVSVEQAQQCGVSSLP--IQDEASEN 1123 Query 291 SVER---MRSTSEWTVVETSLKQETAVIVKNDSSAKPQRVKKPKAENPLKNFKHIVLNND 347 V + ++ TSE T VE IV+ +P+R++K K + L +KH V+NN Sbjct 1124 QVHQVPDLQCTSE-TKVE---------IVQPRQDLRPRRLRKSKVD--LSKYKHTVINNS 1171 Query 348 VTLVFGDAIAVARATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDYVNFYGPL 407 VTLV GDAI +A C+LVNAAN HLKHGGGIA AI++ASGG VQ ESD+Y++ GPL Sbjct 1172 VTLVLGDAIQIASLLPKCVLVNAANRHLKHGGGIAGAINKASGGDVQEESDEYISNSGPL 1231 Query 408 NVGDSTLLKGHGLATGILHVVGPDARANQDIQLLKRCYKAFNKYPLVVSPLISAGIFCVE 467 +VGDS LLKG+GLA IL VVGPDAR N+D LLKRCYK FNK+ +VV+PLIS+GIF V+ Sbjct 1232 HVGDSVLLKGYGLADAILRVVGPDARNNEDAALLKRCYKTFNKHTIVVTPLISSGIFSVD 1291 Query 468 PRVSLEYLLSVVHTKTYVVVNSEKVYNDLAAPKPPTGLTYSHEGWRGIIRNAKSFGFTCF 527 P+VS EYLL+ V T TYVVVN+E +YN LA P P GL YS EGWRG +R AK++GFTCF Sbjct 1292 PKVSFEYLLANVTTTTYVVVNNEDIYNTLATPSKPDGLVYSFEGWRGTVRTAKNYGFTCF 1351 Query 528 ICTDQSANAKLLKGRGVDLTKKTQTVDGVKYYLYSSKDPLTDIITAANACKGICAMPIGY 587 ICT+ SAN K L+ +GVD TKK QTVDGV YYLYS++D LTD+I AAN C GICAMP GY Sbjct 1352 ICTEYSANVKFLRTKGVDTTKKIQTVDGVSYYLYSARDALTDVIAAANGCPGICAMPFGY 1411 Query 588 VTHGLDLAQAGQQVKKITVPYVCLLASKDQVPILNSDVAVQTPEQSFINTVIANGGYHCW 647 VTHGLDLAQ+G V+++ VPYVCLLASK+Q+PI+NSDVA+QTPE +FIN V +NGGYH W Sbjct 1412 VTHGLDLAQSGNYVRQVKVPYVCLLASKEQIPIMNSDVAIQTPETAFINNVTSNGGYHSW 1471 Query 648 HLVTGELIVKGVSYRKLLNWSDQTICYADNKFYVVKGQIALPFDSLEKCRTYLTSRAAQQ 707 HLV+G+LIVK V Y+KLL+WS QTICYADNKFYVVK +ALPF LE CR YLTSRAAQQ Sbjct 1472 HLVSGDLIVKDVCYKKLLHWSGQTICYADNKFYVVKNDVALPFSDLEACRAYLTSRAAQQ 1531 Query 708 KNVDVLVTIDGVNFRTVVLNNTTTYRVQLGSVFYKGSDISDTIPTEKMSGEAVYLADNLS 767 N++VLVTIDGVNFRTV+LN+ TT+R QLG+ FYKG DISD +PT KM GE++++ADNLS Sbjct 1532 VNIEVLVTIDGVNFRTVILNDATTFRKQLGATFYKGVDISDALPTVKMGGESLFVADNLS 1591 Query 768 EAEKAVLSEVYGTADTAFLHRYYSLLALVKKWKYTVHDGVKSLKLNSNNCYVNVTMLMLD 827 E+E+ VL E YGT+D FL RYYSL LV++WK+ VHDGVKSLKL++ NCY+N T++M+D Sbjct 1592 ESEEVVLKEYYGTSDVTFLQRYYSLQPLVQQWKFVVHDGVKSLKLSNYNCYINATIMMID 1651 Query 828 MLKEIKFIVPALQAAYLKHKGGDSTEFIALIMAYGDCTYGEPDDASRLLHTILSKAELTT 887 ML +IKF+VPALQ AYL++KGGD +F+ALIMAYGDCT+ PDD ++LLHT+L+KAELT Sbjct 1652 MLHDIKFVVPALQNAYLRYKGGDPYDFLALIMAYGDCTFDNPDDEAKLLHTLLAKAELTV 1711 Query 888 QAKMVWRQWCNVCGVQDTTTTGLKACIYVGMNSLDELHATHEECCQCGDVRKRQLVEHNA 947 AKMVWR+WC VCG++D TG++AC+Y G+NS++EL + E C CG V+ RQLVEH+ Sbjct 1712 SAKMVWREWCTVCGIRDIEYTGMRACVYAGVNSMEELQSVFNETCVCGSVKHRQLVEHST 1771 Query 948 PWLLLSGLNEAKVMTPTSQSAGPDYTAFNVFQGVETSVGHYLHVRVKDNLLYKYDSGSLS 1007 PWLL+SGLNE KV T T P Y AFNVFQGVETSVGHY+HVRVKD L YKYDSGSL+ Sbjct 1772 PWLLVSGLNEVKVSTSTD----PVYRAFNVFQGVETSVGHYVHVRVKDGLFYKYDSGSLT 1827 Query 1008 KTSDMKCKMTDVYYPKQRYSADCNVVVYSLDGNTWADVDPDLSAFYMKDGKYFTKKPVIE 1067 KTSDMKCKMT V+YPK RY+ADCNVVVY LDG T +V+PDLS +YMKDGKY+T KP I+ Sbjct 1828 KTSDMKCKMTSVWYPKVRYTADCNVVVYDLDGVTKVEVNPDLSNYYMKDGKYYTSKPTIK 1887 Query 1068 YSPATILSGSVYTNSCLVGHDGTIGSDAISSSFNNLLGFDNSKPVSKKLTYSFFPDFEGD 1127 YSPATIL GSVY+NSCLVG DGT GSD IS FN+LLGFD +KP+SKKLTYS P+ +GD Sbjct 1888 YSPATILPGSVYSNSCLVGVDGTPGSDTISKFFNDLLGFDETKPISKKLTYSLLPNEDGD 1947 Query 1128 VILTEYSTYDPIYKNGAMLHGKPILWVNNSKFDSALNKFNRATLRQVYDIAPVTLENKYT 1187 V+L+E++ Y+P+YK G ML GKPILWVNN DSALNK NRA+LRQ+YD+AP+ L+NKYT Sbjct 1948 VLLSEFNNYNPVYKKGVMLKGKPILWVNNGVCDSALNKPNRASLRQLYDVAPIVLDNKYT 2007 Query 1188 VLQDNQIQQVEVEAPKEDAKPQSPVQVAEDID---NKLPIIKCKGLKKPFVKDGYSFVND 1244 VLQDN Q +E P V ED+ KL +KCKGL KPFVK +SFVND Sbjct 2008 VLQDNTSQLIEPNVP-----------VVEDVSITTRKLIEVKCKGLNKPFVKGNFSFVND 2056 Query 1245 PQGVNVIDTLGIDDLRALYVDRNLRLIVLKENNWSALFNIHTVEKGDLSVIAASGSITRR 1304 P GV V+DTLG+ +LRALYVD N R IVL++NNWS+LF +HTVE GDL ++A GS+TRR Sbjct 2057 PNGVTVVDTLGLTELRALYVDINTRYIVLRDNNWSSLFKLHTVESGDLQIVANGGSVTRR 2116 Query 1305 VKILLGASSLFAQFASVTVNVTTAMGKALGRMTRNVITNTGIIGQGFALLKMLLILPFTF 1364 ++LLGASSLFA FA +TV TTA K GR + N G++ F LKML LPF + Sbjct 2117 ARVLLGASSLFASFAKITVTATTAACKTAGRSFCKFVVNYGVLQNMFLFLKMLFFLPFNY 2176 Query 1365 WKSKNQSTVKVEVGALRTAGIVTTNVVKQCASAAYDVLVVKFKRIDWKSTLRLLFLICTT 1424 K Q TV V V LRTAG+VTTN+VKQC +AAY +L+ KFKR+DWK+TLRL L+CTT Sbjct 2177 LWPKKQPTVDVGVSGLRTAGVVTTNIVKQCGTAAYYMLLGKFKRVDWKATLRLFLLLCTT 2236 Query 1425 GLLLSSLYYLFLFHQVLTSDVMLDGAEGMLATYRELRSYLGIHSLCDGMVEAYRNVSYDV 1484 LLLSS+Y+L +F+QVL+SDVML+ A G+LA Y+E+RSYLGI +LCDG+ YRN S+DV Sbjct 2237 ILLLSSIYHLVIFNQVLSSDVMLEDATGILAMYKEVRSYLGIRTLCDGLAVEYRNTSFDV 2296 Query 1485 NDFCSNRSALCNWCLIGQDSLTRYSAFQMIQTHVTSYVINIDWVWFVMEFALAYVLYTST 1544 DFCSNRS LC WCLIGQDSLTRYSA QM+QTH+TSYV+NIDW+WF +EF LAYVLYTS+ Sbjct 2297 VDFCSNRSVLCQWCLIGQDSLTRYSALQMLQTHITSYVLNIDWIWFALEFFLAYVLYTSS 2356 Query 1545 FNVLLLVVSSQYFFSYTGAFVNWRSYNYLVSGYFFCVTHIPLLGLVRIYNFLACLWFLRR 1604 FNVLLLVV++QYFF+YT AFVNWR+YNY+VSG FF VTHIPL GLVR+YNFLACLWFLR+ Sbjct 2357 FNVLLLVVTAQYFFAYTSAFVNWRAYNYIVSGLFFLVTHIPLHGLVRVYNFLACLWFLRK 2416 Query 1605 FYNHVINGCKDTACLLCYKRNRLTRVEASTVVCGSKRTFYIVANGGTSFCCRHNWNCVDC 1664 FY+HVINGCKDTACLLCYKRNRLTRVEAST+VCG+KRTFYI ANGGTS+CC+HNWNCV+C Sbjct 2417 FYSHVINGCKDTACLLCYKRNRLTRVEASTIVCGTKRTFYIAANGGTSYCCKHNWNCVEC 2476 Query 1665 DTAGIGNTFICEEVANDLTTSLRRLVKPTDKSHYYVESVTVKDSVVQLHYSREGASCYER 1724 DTAG+GNTFIC EVANDLTT+LRRL+KPTD+SHYYV+SV VKD+VV+LHY+R+G+SCYER Sbjct 2477 DTAGVGNTFICTEVANDLTTTLRRLIKPTDQSHYYVDSVVVKDAVVELHYNRDGSSCYER 2536 Query 1725 YPLCYFTNLDKLKFKEVCKTPTGIPEHNFLIYDSSDRGQENLARSACVYYSQVLSKPMLL 1784 YPLCYFTNL+KLKFKEVCKTPTGIPEHNFLIYD++DRGQENLARSACVYYSQVL KPMLL Sbjct 2537 YPLCYFTNLEKLKFKEVCKTPTGIPEHNFLIYDTNDRGQENLARSACVYYSQVLCKPMLL 2596 Query 1785 VDSNMVTTVGDSREIASKMLDSYVNSFISLFGVNRDKLDKLVATARDCVKRGDDFQTVIK 1844 VD N+VTTVGDSREIA KMLDS++NSFISLF V+RDKL+KL+ TARDCV+RGDDFQTV+K Sbjct 2597 VDVNLVTTVGDSREIAIKMLDSFINSFISLFSVSRDKLEKLINTARDCVRRGDDFQTVLK 2656 Query 1845 TFTDAARGPAGVESDVETSSIVDALQYAYKHDLQLTTEGFNNYVPSYIKPDSVATADLGC 1904 TFTDAARG AGVESDVET+ +VDALQYA+K+D+QLTTE +NNYVP YIKPDS+ T DLGC Sbjct 2657 TFTDAARGHAGVESDVETTMVVDALQYAHKNDIQLTTECYNNYVPGYIKPDSINTLDLGC 2716 Query 1905 LIDLNAASVNQTSIRNANGACIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLTTSRLRSA 1964 LIDL AASVNQTS+RNANGAC+WNS DYMKLSDS KRQIRIACRKCNIPFRLTTS+LR+A Sbjct 2717 LIDLKAASVNQTSMRNANGACVWNSGDYMKLSDSFKRQIRIACRKCNIPFRLTTSKLRAA 2776 Query 1965 DNILSVKFSATKLSG 1979 DNILSVKFSATK+ G Sbjct 2777 DNILSVKFSATKIVG 2791 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Bat coronavirus (BtCoV/133/2005)] Sequence ID: P0C6W1.1 Length: 7126 Range 1: 849 to 2791 Score:2645 bits(6856), Expect:0.0, Method:Compositional matrix adjust., Identities:1319/1995(66%), Positives:1594/1995(79%), Gaps:69/1995(3%) Query 2 PPKGVKFGGEQTKEITAVRSVSVDYDVHPVLDALLAGSELATFTVEKDLPVKDFVDVVKD 61 P K V FG T E+TA RSVS+ YD+HPVLDALL+ S+LATFTVEKDL V+DFVDV+KD Sbjct 849 PSKKVTFGDVNTVEVTAYRSVSITYDIHPVLDALLSSSKLATFTVEKDLLVEDFVDVIKD 908 Query 62 EVIELLSKLLRGYNVDGFDLEDFADTPCYVYNAEGDLAWSSTMTFSVNPVEEVEEECDDD 121 EV+ LL+ LLRGY++DGFD+EDF D PCYVYN +GD AWSS MTFS+NPVE+VEE ++ Sbjct 909 EVLTLLTPLLRGYDIDGFDVEDFIDVPCYVYNQDGDCAWSSNMTFSINPVEDVEEV--EE 966 Query 122 YVEDEYLSEEMLVEEDENSWAAAVEAVIPMEDVQLDTLVAEIDVSE--PADDVAEQASTE 179 ++ED+YLS+E+ + +DE +W AVE V+P++D+ LVAEI++ E P + E E Sbjct 967 FIEDDYLSDELPIADDEEAWTRAVEEVMPLDDI----LVAEIELEEDLPLETALESVEAE 1022 Query 180 EVEVPS--ACVLEASQVANAAEVESCEAEVSSSIPLHEDANAAKANDCAEGMPALDSTET 237 E S CV+E ++ A VES ++ S+S + E+ + K P ET Sbjct 1023 VGESISDELCVVETAK-AQEPSVESTDSTPSTSTVVSENDLSVK--------PMSRVAET 1073 Query 238 VSKLSVDT-----PVGDVTQDDATSSNATVISEDVHTATHSK--GLVAVPEVVPEKALGT 290 L V+T PV DVT A+V++ D+ + ++ G+ ++P + ++A Sbjct 1074 GDVLEVETAVVGGPVSDVT--------ASVVTNDIVSVEQAQQCGVSSLP--IQDEASEN 1123 Query 291 SVER---MRSTSEWTVVETSLKQETAVIVKNDSSAKPQRVKKPKAENPLKNFKHIVLNND 347 V + ++ TSE T VE IV+ +P+R++K K + L +KH V+NN Sbjct 1124 QVHQVPDLQCTSE-TKVE---------IVQPRQDLRPRRLRKSKVD--LSKYKHTVINNS 1171 Query 348 VTLVFGDAIAVARATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDYVNFYGPL 407 VTLV GDAI +A C+LVNAAN HLKHGGGIA AI++ASGG VQ ESD+Y++ GPL Sbjct 1172 VTLVLGDAIQIASLLPKCVLVNAANRHLKHGGGIAGAINKASGGDVQEESDEYISNSGPL 1231 Query 408 NVGDSTLLKGHGLATGILHVVGPDARANQDIQLLKRCYKAFNKYPLVVSPLISAGIFCVE 467 +VGDS LLKG+GLA IL VVGPDAR N+D LLKRCYK FNK+ +VV+PLIS+GIF V+ Sbjct 1232 HVGDSVLLKGYGLADAILRVVGPDARNNEDAALLKRCYKTFNKHTIVVTPLISSGIFSVD 1291 Query 468 PRVSLEYLLSVVHTKTYVVVNSEKVYNDLAAPKPPTGLTYSHEGWRGIIRNAKSFGFTCF 527 P+VS EYLL+ V T TYVVVN+E +YN LA P P GL YS EGWRG +R AK++GFTCF Sbjct 1292 PKVSFEYLLANVTTTTYVVVNNEDIYNTLATPSKPDGLVYSFEGWRGTVRTAKNYGFTCF 1351 Query 528 ICTDQSANAKLLKGRGVDLTKKTQTVDGVKYYLYSSKDPLTDIITAANACKGICAMPIGY 587 ICT+ SAN K L+ +GVD TKK QTVDGV YYLYS++D LTD+I AAN C GICAMP GY Sbjct 1352 ICTEYSANVKFLRTKGVDTTKKIQTVDGVSYYLYSARDALTDVIAAANGCPGICAMPFGY 1411 Query 588 VTHGLDLAQAGQQVKKITVPYVCLLASKDQVPILNSDVAVQTPEQSFINTVIANGGYHCW 647 VTHGLDLAQ+G V+++ VPYVCLLASK+Q+PI+NSDVA+QTPE +FIN V +NGGYH W Sbjct 1412 VTHGLDLAQSGNYVRQVKVPYVCLLASKEQIPIMNSDVAIQTPETAFINNVTSNGGYHSW 1471 Query 648 HLVTGELIVKGVSYRKLLNWSDQTICYADNKFYVVKGQIALPFDSLEKCRTYLTSRAAQQ 707 HLV+G+LIVK V Y+KLL+WS QTICYADNKFYVVK +ALPF LE CR YLTSRAAQQ Sbjct 1472 HLVSGDLIVKDVCYKKLLHWSGQTICYADNKFYVVKNDVALPFSDLEACRAYLTSRAAQQ 1531 Query 708 KNVDVLVTIDGVNFRTVVLNNTTTYRVQLGSVFYKGSDISDTIPTEKMSGEAVYLADNLS 767 N++VLVTIDGVNFRTV+LN+ TT+R QLG+ FYKG DISD +PT KM GE++++ADNLS Sbjct 1532 VNIEVLVTIDGVNFRTVILNDATTFRKQLGATFYKGVDISDALPTVKMGGESLFVADNLS 1591 Query 768 EAEKAVLSEVYGTADTAFLHRYYSLLALVKKWKYTVHDGVKSLKLNSNNCYVNVTMLMLD 827 E+E+ VL E YGT+D FL RYYSL LV++WK+ VHDGVKSLKL++ NCY+N T++M+D Sbjct 1592 ESEEVVLKEYYGTSDVTFLQRYYSLQPLVQQWKFVVHDGVKSLKLSNYNCYINATIMMID 1651 Query 828 MLKEIKFIVPALQAAYLKHKGGDSTEFIALIMAYGDCTYGEPDDASRLLHTILSKAELTT 887 ML +IKF+VPALQ AYL++KGGD +F+ALIMAYGDCT+ PDD ++LLHT+L+KAELT Sbjct 1652 MLHDIKFVVPALQNAYLRYKGGDPYDFLALIMAYGDCTFDNPDDEAKLLHTLLAKAELTV 1711 Query 888 QAKMVWRQWCNVCGVQDTTTTGLKACIYVGMNSLDELHATHEECCQCGDVRKRQLVEHNA 947 AKMVWR+WC VCG++D TG++AC+Y G+NS++EL + E C CG V+ RQLVEH+ Sbjct 1712 SAKMVWREWCTVCGIRDIEYTGMRACVYAGVNSMEELQSVFNETCVCGSVKHRQLVEHST 1771 Query 948 PWLLLSGLNEAKVMTPTSQSAGPDYTAFNVFQGVETSVGHYLHVRVKDNLLYKYDSGSLS 1007 PWLL+SGLNE KV T T P Y AFNVFQGVETSVGHY+HVRVKD L YKYDSGSL+ Sbjct 1772 PWLLVSGLNEVKVSTSTD----PVYRAFNVFQGVETSVGHYVHVRVKDGLFYKYDSGSLT 1827 Query 1008 KTSDMKCKMTDVYYPKQRYSADCNVVVYSLDGNTWADVDPDLSAFYMKDGKYFTKKPVIE 1067 KTSDMKCKMT V+YPK RY+ADCNVVVY LDG T +V+PDLS +YMKDGKY+T KP I+ Sbjct 1828 KTSDMKCKMTSVWYPKVRYTADCNVVVYDLDGVTKVEVNPDLSNYYMKDGKYYTSKPTIK 1887 Query 1068 YSPATILSGSVYTNSCLVGHDGTIGSDAISSSFNNLLGFDNSKPVSKKLTYSFFPDFEGD 1127 YSPATIL GSVY+NSCLVG DGT GSD IS FN+LLGFD +KP+SKKLTYS P+ +GD Sbjct 1888 YSPATILPGSVYSNSCLVGVDGTPGSDTISKFFNDLLGFDETKPISKKLTYSLLPNEDGD 1947 Query 1128 VILTEYSTYDPIYKNGAMLHGKPILWVNNSKFDSALNKFNRATLRQVYDIAPVTLENKYT 1187 V+L+E++ Y+P+YK G ML GKPILWVNN DSALNK NRA+LRQ+YD+AP+ L+NKYT Sbjct 1948 VLLSEFNNYNPVYKKGVMLKGKPILWVNNGVCDSALNKPNRASLRQLYDVAPIVLDNKYT 2007 Query 1188 VLQDNQIQQVEVEAPKEDAKPQSPVQVAEDID---NKLPIIKCKGLKKPFVKDGYSFVND 1244 VLQDN Q +E P V ED+ KL +KCKGL KPFVK +SFVND Sbjct 2008 VLQDNTSQLIEPNVP-----------VVEDVSITTRKLIEVKCKGLNKPFVKGNFSFVND 2056 Query 1245 PQGVNVIDTLGIDDLRALYVDRNLRLIVLKENNWSALFNIHTVEKGDLSVIAASGSITRR 1304 P GV V+DTLG+ +LRALYVD N R IVL++NNWS+LF +HTVE GDL ++A GS+TRR Sbjct 2057 PNGVTVVDTLGLTELRALYVDINTRYIVLRDNNWSSLFKLHTVESGDLQIVANGGSVTRR 2116 Query 1305 VKILLGASSLFAQFASVTVNVTTAMGKALGRMTRNVITNTGIIGQGFALLKMLLILPFTF 1364 ++LLGASSLFA FA +TV TTA K GR + N G++ F LKML LPF + Sbjct 2117 ARVLLGASSLFASFAKITVTATTAACKTAGRSFCKFVVNYGVLQNMFLFLKMLFFLPFNY 2176 Query 1365 WKSKNQSTVKVEVGALRTAGIVTTNVVKQCASAAYDVLVVKFKRIDWKSTLRLLFLICTT 1424 K Q TV V V LRTAG+VTTN+VKQC +AAY +L+ KFKR+DWK+TLRL L+CTT Sbjct 2177 LWPKKQPTVDVGVSGLRTAGVVTTNIVKQCGTAAYYMLLGKFKRVDWKATLRLFLLLCTT 2236 Query 1425 GLLLSSLYYLFLFHQVLTSDVMLDGAEGMLATYRELRSYLGIHSLCDGMVEAYRNVSYDV 1484 LLLSS+Y+L +F+QVL+SDVML+ A G+LA Y+E+RSYLGI +LCDG+ YRN S+DV Sbjct 2237 ILLLSSIYHLVIFNQVLSSDVMLEDATGILAMYKEVRSYLGIRTLCDGLAVEYRNTSFDV 2296 Query 1485 NDFCSNRSALCNWCLIGQDSLTRYSAFQMIQTHVTSYVINIDWVWFVMEFALAYVLYTST 1544 DFCSNRS LC WCLIGQDSLTRYSA QM+QTH+TSYV+NIDW+WF +EF LAYVLYTS+ Sbjct 2297 VDFCSNRSVLCQWCLIGQDSLTRYSALQMLQTHITSYVLNIDWIWFALEFFLAYVLYTSS 2356 Query 1545 FNVLLLVVSSQYFFSYTGAFVNWRSYNYLVSGYFFCVTHIPLLGLVRIYNFLACLWFLRR 1604 FNVLLLVV++QYFF+YT AFVNWR+YNY+VSG FF VTHIPL GLVR+YNFLACLWFLR+ Sbjct 2357 FNVLLLVVTAQYFFAYTSAFVNWRAYNYIVSGLFFLVTHIPLHGLVRVYNFLACLWFLRK 2416 Query 1605 FYNHVINGCKDTACLLCYKRNRLTRVEASTVVCGSKRTFYIVANGGTSFCCRHNWNCVDC 1664 FY+HVINGCKDTACLLCYKRNRLTRVEAST+VCG+KRTFYI ANGGTS+CC+HNWNCV+C Sbjct 2417 FYSHVINGCKDTACLLCYKRNRLTRVEASTIVCGTKRTFYIAANGGTSYCCKHNWNCVEC 2476 Query 1665 DTAGIGNTFICEEVANDLTTSLRRLVKPTDKSHYYVESVTVKDSVVQLHYSREGASCYER 1724 DTAG+GNTFIC EVANDLTT+LRRL+KPTD+SHYYV+SV VKD+VV+LHY+R+G+SCYER Sbjct 2477 DTAGVGNTFICTEVANDLTTTLRRLIKPTDQSHYYVDSVVVKDAVVELHYNRDGSSCYER 2536 Query 1725 YPLCYFTNLDKLKFKEVCKTPTGIPEHNFLIYDSSDRGQENLARSACVYYSQVLSKPMLL 1784 YPLCYFTNL+KLKFKEVCKTPTGIPEHNFLIYD++DRGQENLARSACVYYSQVL KPMLL Sbjct 2537 YPLCYFTNLEKLKFKEVCKTPTGIPEHNFLIYDTNDRGQENLARSACVYYSQVLCKPMLL 2596 Query 1785 VDSNMVTTVGDSREIASKMLDSYVNSFISLFGVNRDKLDKLVATARDCVKRGDDFQTVIK 1844 VD N+VTTVGDSREIA KMLDS++NSFISLF V+RDKL+KL+ TARDCV+RGDDFQTV+K Sbjct 2597 VDVNLVTTVGDSREIAIKMLDSFINSFISLFSVSRDKLEKLINTARDCVRRGDDFQTVLK 2656 Query 1845 TFTDAARGPAGVESDVETSSIVDALQYAYKHDLQLTTEGFNNYVPSYIKPDSVATADLGC 1904 TFTDAARG AGVESDVET+ +VDALQYA+K+D+QLTTE +NNYVP YIKPDS+ T DLGC Sbjct 2657 TFTDAARGHAGVESDVETTMVVDALQYAHKNDIQLTTECYNNYVPGYIKPDSINTLDLGC 2716 Query 1905 LIDLNAASVNQTSIRNANGACIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLTTSRLRSA 1964 LIDL AASVNQTS+RNANGAC+WNS DYMKLSDS KRQIRIACRKCNIPFRLTTS+LR+A Sbjct 2717 LIDLKAASVNQTSMRNANGACVWNSGDYMKLSDSFKRQIRIACRKCNIPFRLTTSKLRAA 2776 Query 1965 DNILSVKFSATKLSG 1979 DNILSVKFSATK+ G Sbjct 2777 DNILSVKFSATKIVG 2791 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Betacoronavirus England 1] Sequence ID: K9N638.1 Length: 4391 Range 1: 854 to 2739 Score:2331 bits(6042), Expect:0.0, Method:Compositional matrix adjust., Identities:1149/1987(58%), Positives:1449/1987(72%), Gaps:109/1987(5%) Query 1 APPKGVKFGGEQTKEITAVRSVSVDYDVHPVLDALLAGSELATFTVEKDLPVKDFVDVVK 60 AP K V FGG+Q E+ AVRSV+V+Y++H VLD LLA S L TF V+K L +++F DVVK Sbjct 854 APVKKVAFGGDQVHEVAAVRSVTVEYNIHAVLDTLLASSSLRTFVVDKSLSIEEFADVVK 913 Query 61 DEVIELLSKLLRGYNVDGFDLEDFADTPCYVYNAEGDLAWSSTMTFSVNPVEEVEEECDD 120 ++V +LL KLLRG + FDL+DF D PCY +NAEGD +WSSTM FS++PVE CD+ Sbjct 914 EQVSDLLVKLLRGMPIPDFDLDDFIDAPCYCFNAEGDASWSSTMIFSLHPVE-----CDE 968 Query 121 DYVEDEYLSEEMLVEEDENSWAAAVEAVIPMEDVQLDTLVAEIDVSEPADDVAEQASTEE 180 + E VEA D+ E + + STE+ Sbjct 969 ECSE--------------------VEAS---------------DLEEGESECISETSTEQ 993 Query 181 VEVPSACVLEASQVANAAEVESCEAEVSSSIPLHEDANAAKANDCAEGMPALDSTETVSK 240 V+V + ++++ + A V + PL E A D TE+V + Sbjct 994 VDV-------SHEISD----DEWAAAVDEAFPLDE---------------AEDVTESVQE 1027 Query 241 LS--VDTPVGDVTQDDATSSNATVISEDVHTATHSKGLVAVPEVVPEKALGTSVERMRST 298 + V+ PV D+ Q VI++ + V VP V ++ Sbjct 1028 EAQPVEVPVEDIAQ--------VVIADTLQETPVVSDTVEVPPQV-----------VKLP 1068 Query 299 SEWTVVETSLKQETAVIVKNDS------SAKPQRVKKPKAENPLKNFKHIVLNNDVTLVF 352 SE ++ +K E A + + D+ + KP+R++K + +PL NF+H V+ VT+V Sbjct 1069 SEPQTIQPEVK-EVAPVYEADTEQTQSVTVKPKRLRKKRNVDPLSNFEHKVITECVTIVL 1127 Query 353 GDAIAVARATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDYVNFYGPLNVGDS 412 GDAI VA+ + +LVNAANTHLKHGGGIA AI+ AS G VQ ESD+Y+ GPL VGDS Sbjct 1128 GDAIQVAKCYGESVLVNAANTHLKHGGGIAGAINAASKGAVQKESDEYILAKGPLQVGDS 1187 Query 413 TLLKGHGLATGILHVVGPDARANQDIQLLKRCYKAFNKYPLVVSPLISAGIFCVEPRVSL 472 LL+GH LA ILHVVGPDARA QD+ LL +CYKA N YPLVV+PL+SAGIF V+P VS Sbjct 1188 VLLQGHSLAKNILHVVGPDARAKQDVSLLSKCYKAMNAYPLVVTPLVSAGIFGVKPAVSF 1247 Query 473 EYLLSVVHTKTYVVVNSEKVYNDLAAPKPPTGLTYSHEGWRGIIRNAKSFGFTCFICTDQ 532 +YL+ T+ VVVNS+ VY L P LT+S++G RG IR AK +GFT F+CTD Sbjct 1248 DYLIREAKTRVLVVVNSQDVYKSLTIVDIPQSLTFSYDGLRGAIRKAKDYGFTVFVCTDN 1307 Query 533 SANAKLLKGRGVDLTKKTQTVDGVKYYLYSSKDPLTDIITAANACKGICAMPIGYVTHGL 592 SAN K+L+ +GVD TKK TVDGV+YY Y+SKD L DI+ AN GI +MP+GYV+HGL Sbjct 1308 SANTKVLRNKGVDYTKKFLTVDGVQYYCYTSKDTLDDILQQANKSVGIISMPLGYVSHGL 1367 Query 593 DLAQAGQQVKKITVPYVCLLASKDQVPILNSDVAVQTPEQSFINTVIANGGYHCWHLVTG 652 DL QAG V+++ VPYVCLLA+K+Q IL S+ P + FI V NGGY+ WHLV G Sbjct 1368 DLIQAGSVVRRVNVPYVCLLANKEQEAILMSEDVKLNPSEDFIKHVRTNGGYNSWHLVEG 1427 Query 653 ELIVKGVSYRKLLNWSDQTICYADNKFYVVKGQIALPFDSLEKCRTYLTSRAAQQKNVDV 712 EL+V+ + KLL+WSDQTICY D+ FYVVK A PF++L CR YL SR QQ ++V Sbjct 1428 ELLVQDLRLNKLLHWSDQTICYKDSVFYVVKNSTAFPFETLSACRAYLDSRTTQQLTIEV 1487 Query 713 LVTIDGVNFRTVVLNNTTTYRVQLGSVFYKGSDISDTIPTEKMSGEAVYLADNLSEAEKA 772 LVT+DGVNFRTVVLNN TYR QLG VF+ G+DISDTIP EK +G ++YLADNL+ E Sbjct 1488 LVTVDGVNFRTVVLNNKNTYRSQLGCVFFNGADISDTIPDEKQNGHSLYLADNLTADETK 1547 Query 773 VLSEVYGTADTAFLHRYYSLLALVKKWKYTVHDGVKSLKLNSNNCYVNVTMLMLDMLKEI 832 L E+YG D FLHR+YSL A V KWK V D V+SLKL+ NNCY+N ++ LD+LK+I Sbjct 1548 ALKELYGPVDPTFLHRFYSLKAAVHKWKMVVCDKVRSLKLSDNNCYLNAVIMTLDLLKDI 1607 Query 833 KFIVPALQAAYLKHKGGDSTEFIALIMAYGDCTYGEPDDASRLLHTILSKAELTTQAKMV 892 KF++PALQ A++KHKGGDST+FIALIMAYG+CT+G PDDASRLLHT+L+KAEL A+MV Sbjct 1608 KFVIPALQHAFMKHKGGDSTDFIALIMAYGNCTFGAPDDASRLLHTVLAKAELCCSARMV 1667 Query 893 WRQWCNVCGVQDTTTTGLKACIYVGMNSLDELHATHEECCQCGDVRKRQLVEHNAPWLLL 952 WR+WCNVCG++D GLKAC YVG+ ++++L A CQCG R RQ+VEH PWLLL Sbjct 1668 WREWCNVCGIKDVVLQGLKACCYVGVQTVEDLRARMTYVCQCGGERHRQIVEHTTPWLLL 1727 Query 953 SGLNEAKVMTPTSQSAGPDYTAFNVFQGVETSVGHYLHVRVKDNLLYKYDSGSLSKTSDM 1012 SG K++T S PD+ AFNVFQG+ET+VGHY+H R+K L+ K+DSG++SKTSD Sbjct 1728 SGTPNEKLVT---TSTAPDFVAFNVFQGIETAVGHYVHARLKGGLILKFDSGTVSKTSDW 1784 Query 1013 KCKMTDVYYPKQRYSADCNVVVYSLDGNTWADVDPDLSAFYMKDGKYFTKKPVIEYSPAT 1072 KCK+TDV +P Q+YS+DCNVV YSLDGN +VDPDLSAFY+KDGKYFT +P + YSPAT Sbjct 1785 KCKVTDVLFPGQKYSSDCNVVRYSLDGNFRTEVDPDLSAFYVKDGKYFTSEPPVTYSPAT 1844 Query 1073 ILSGSVYTNSCLVGHDGTIGSDAISSSFNNLLGFDNSKPVSKKLTYSFFPDFEGDVILTE 1132 IL+GSVYTNSCLV DG G DAIS SFNNLLGFD+SKPV+KK TYSF P +GDV+L E Sbjct 1845 ILAGSVYTNSCLVSSDGQPGGDAISLSFNNLLGFDSSKPVTKKYTYSFLPKEDGDVLLAE 1904 Query 1133 YSTYDPIYKNGAMLHGKPILWVNNSKFDSALNKFNRATLRQVYDIAPVTLENKYTVLQDN 1192 + TYDPIYKNGAM GKPILWVN + +D+ LNKFNRA+LRQ++D+AP+ LENK+T L Sbjct 1905 FDTYDPIYKNGAMYKGKPILWVNKASYDTNLNKFNRASLRQIFDVAPIELENKFTPLS-- 1962 Query 1193 QIQQVEVEAPKEDAKPQSPVQVAEDIDNKLPIIKCKGLKKPFVKDGYSFVNDPQGVNVID 1252 ++ VE P D VA + ++ I+KCKGL KPFVKD SFV D G V++ Sbjct 1963 -VESTPVEPPTVDV-------VA--LQQEMTIVKCKGLNKPFVKDNVSFVADDSGTPVVE 2012 Query 1253 TLGIDDLRALYVDRNLRLIVLKENNWSALFNIHTVEKGDLSVIAASGSITRRVKILLGAS 1312 L +DL LYVD ++IVLK+N S++ +HTVE GD++V+AASGS+TR+VK+L AS Sbjct 2013 YLSKEDLHTLYVDPKYQVIVLKDNVLSSMLRLHTVESGDINVVAASGSLTRKVKLLFRAS 2072 Query 1313 SLFAQFASVTVNVTTAMGKALGRMTRNVITNTGIIGQGFALLKMLLILPFTFWKSKNQST 1372 F +FA+ T TTA+G + + R++ GI+ F+ +KML +LP ++ T Sbjct 2073 FYFKEFATRTFTATTAVGSCIKSVVRHLGVTKGILTGCFSFVKMLFMLPLAYFSDSKLGT 2132 Query 1373 VKVEVGALRTAGIVTTNVVKQCASAAYDVLVVKFKRIDWKSTLRLLFLICTTGLLLSSLY 1432 +V+V AL+TAG+VT NVVKQC +AA D+ + K +R+DWKSTLRLL ++CTT +LLSS+Y Sbjct 2133 TEVKVSALKTAGVVTGNVVKQCCTAAVDLSMDKLRRVDWKSTLRLLLMLCTTMVLLSSVY 2192 Query 1433 YLFLFHQVLTSDVMLDGAEGMLATYRELRSYLGIHSLCDGMVEAYRNVSYDVNDFCSNRS 1492 +L++F+QVL+SDVM + A+G+ Y+E+R+YLGI S CDG+ AYR S+DV FC+NRS Sbjct 2193 HLYVFNQVLSSDVMFEDAQGLKKFYKEVRAYLGISSACDGLASAYRANSFDVPTFCANRS 2252 Query 1493 ALCNWCLIGQDSLTRYSAFQMIQTHVTSYVINIDWVWFVMEFALAYVLYTSTFNVLLLVV 1552 A+CNWCLI QDS+T Y A +M+QTH++ YV+NIDW+WF E LAY+LYTS FN LLL Sbjct 2253 AMCNWCLISQDSITHYPALKMVQTHLSHYVLNIDWLWFAFETGLAYMLYTSAFNWLLLAG 2312 Query 1553 SSQYFFSYTGAFVNWRSYNYLVSGYFFCVTHIPLLGLVRIYNFLACLWFLRRFYNHVING 1612 + YFF+ T FV+WRSYNY VS F+ THIP+ GLVR+YN LACLW LR+FY HVING Sbjct 2313 TLHYFFAQTSIFVDWRSYNYAVSSAFWLFTHIPMAGLVRMYNLLACLWLLRKFYQHVING 2372 Query 1613 CKDTACLLCYKRNRLTRVEASTVVCGSKRTFYIVANGGTSFCCRHNWNCVDCDTAGIGNT 1672 CKDTACLLCYKRNRLTRVEASTVVCG KRTFYI ANGG SFC RHNWNCVDCDTAG+GNT Sbjct 2373 CKDTACLLCYKRNRLTRVEASTVVCGGKRTFYITANGGISFCRRHNWNCVDCDTAGVGNT 2432 Query 1673 FICEEVANDLTTSLRRLVKPTDKSHYYVESVTVKDSVVQLHYSREGASCYERYPLCYFTN 1732 FICEEVANDLTT+LRR + TD+SHYYV+SVTVK++VVQ +Y R+G YER+PLC FTN Sbjct 2433 FICEEVANDLTTALRRPINATDRSHYYVDSVTVKETVVQFNYRRDGQPFYERFPLCAFTN 2492 Query 1733 LDKLKFKEVCKTPTGIPEHNFLIYDSSDRGQENLARSACVYYSQVLSKPMLLVDSNMVTT 1792 LDKLKFKEVCKT TGIPE+NF+IYDSSDRGQE+LARSACVYYSQVL K +LLVDS++VT+ Sbjct 2493 LDKLKFKEVCKTTTGIPEYNFIIYDSSDRGQESLARSACVYYSQVLCKSILLVDSSLVTS 2552 Query 1793 VGDSREIASKMLDSYVNSFISLFGVNRDKLDKLVATARDCVKRGDDFQTVIKTFTDAARG 1852 VGDS EIA+KM DS+VNSF+SL+ V RDKL+KL++TARD V+RGD+F +V+ TF DAARG Sbjct 2553 VGDSSEIATKMFDSFVNSFVSLYNVTRDKLEKLISTARDGVRRGDNFHSVLTTFIDAARG 2612 Query 1853 PAGVESDVETSSIVDALQYAYKHDLQLTTEGFNNYVPSYIKPDSVATADLGCLIDLNAAS 1912 PAGVESDVET+ IVD++QYA+KHD+Q+T E +NNYVPSY+KPDSV+T+DLG LID NAAS Sbjct 2613 PAGVESDVETNEIVDSVQYAHKHDIQITNESYNNYVPSYVKPDSVSTSDLGSLIDCNAAS 2672 Query 1913 VNQTSIRNANGACIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLTTSRLRSADNILSVKF 1972 VNQ +RN+NGACIWN++ YMKLSD+LKRQIRIACRKCN+ FRLTTS+LR+ DNILSV+F Sbjct 2673 VNQIVLRNSNGACIWNAAAYMKLSDALKRQIRIACRKCNLAFRLTTSKLRANDNILSVRF 2732 Query 1973 SATKLSG 1979 +A K+ G Sbjct 2733 TANKIVG 2739 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Betacoronavirus England 1] Sequence ID: K9N7C7.1 Length: 7078 Range 1: 854 to 2739 Score:2326 bits(6028), Expect:0.0, Method:Compositional matrix adjust., Identities:1149/1987(58%), Positives:1449/1987(72%), Gaps:109/1987(5%) Query 1 APPKGVKFGGEQTKEITAVRSVSVDYDVHPVLDALLAGSELATFTVEKDLPVKDFVDVVK 60 AP K V FGG+Q E+ AVRSV+V+Y++H VLD LLA S L TF V+K L +++F DVVK Sbjct 854 APVKKVAFGGDQVHEVAAVRSVTVEYNIHAVLDTLLASSSLRTFVVDKSLSIEEFADVVK 913 Query 61 DEVIELLSKLLRGYNVDGFDLEDFADTPCYVYNAEGDLAWSSTMTFSVNPVEEVEEECDD 120 ++V +LL KLLRG + FDL+DF D PCY +NAEGD +WSSTM FS++PVE CD+ Sbjct 914 EQVSDLLVKLLRGMPIPDFDLDDFIDAPCYCFNAEGDASWSSTMIFSLHPVE-----CDE 968 Query 121 DYVEDEYLSEEMLVEEDENSWAAAVEAVIPMEDVQLDTLVAEIDVSEPADDVAEQASTEE 180 + E VEA D+ E + + STE+ Sbjct 969 ECSE--------------------VEAS---------------DLEEGESECISETSTEQ 993 Query 181 VEVPSACVLEASQVANAAEVESCEAEVSSSIPLHEDANAAKANDCAEGMPALDSTETVSK 240 V+V + ++++ + A V + PL E A D TE+V + Sbjct 994 VDV-------SHEISD----DEWAAAVDEAFPLDE---------------AEDVTESVQE 1027 Query 241 LS--VDTPVGDVTQDDATSSNATVISEDVHTATHSKGLVAVPEVVPEKALGTSVERMRST 298 + V+ PV D+ Q VI++ + V VP V ++ Sbjct 1028 EAQPVEVPVEDIAQ--------VVIADTLQETPVVSDTVEVPPQV-----------VKLP 1068 Query 299 SEWTVVETSLKQETAVIVKNDS------SAKPQRVKKPKAENPLKNFKHIVLNNDVTLVF 352 SE ++ +K E A + + D+ + KP+R++K + +PL NF+H V+ VT+V Sbjct 1069 SEPQTIQPEVK-EVAPVYEADTEQTQSVTVKPKRLRKKRNVDPLSNFEHKVITECVTIVL 1127 Query 353 GDAIAVARATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDYVNFYGPLNVGDS 412 GDAI VA+ + +LVNAANTHLKHGGGIA AI+ AS G VQ ESD+Y+ GPL VGDS Sbjct 1128 GDAIQVAKCYGESVLVNAANTHLKHGGGIAGAINAASKGAVQKESDEYILAKGPLQVGDS 1187 Query 413 TLLKGHGLATGILHVVGPDARANQDIQLLKRCYKAFNKYPLVVSPLISAGIFCVEPRVSL 472 LL+GH LA ILHVVGPDARA QD+ LL +CYKA N YPLVV+PL+SAGIF V+P VS Sbjct 1188 VLLQGHSLAKNILHVVGPDARAKQDVSLLSKCYKAMNAYPLVVTPLVSAGIFGVKPAVSF 1247 Query 473 EYLLSVVHTKTYVVVNSEKVYNDLAAPKPPTGLTYSHEGWRGIIRNAKSFGFTCFICTDQ 532 +YL+ T+ VVVNS+ VY L P LT+S++G RG IR AK +GFT F+CTD Sbjct 1248 DYLIREAKTRVLVVVNSQDVYKSLTIVDIPQSLTFSYDGLRGAIRKAKDYGFTVFVCTDN 1307 Query 533 SANAKLLKGRGVDLTKKTQTVDGVKYYLYSSKDPLTDIITAANACKGICAMPIGYVTHGL 592 SAN K+L+ +GVD TKK TVDGV+YY Y+SKD L DI+ AN GI +MP+GYV+HGL Sbjct 1308 SANTKVLRNKGVDYTKKFLTVDGVQYYCYTSKDTLDDILQQANKSVGIISMPLGYVSHGL 1367 Query 593 DLAQAGQQVKKITVPYVCLLASKDQVPILNSDVAVQTPEQSFINTVIANGGYHCWHLVTG 652 DL QAG V+++ VPYVCLLA+K+Q IL S+ P + FI V NGGY+ WHLV G Sbjct 1368 DLIQAGSVVRRVNVPYVCLLANKEQEAILMSEDVKLNPSEDFIKHVRTNGGYNSWHLVEG 1427 Query 653 ELIVKGVSYRKLLNWSDQTICYADNKFYVVKGQIALPFDSLEKCRTYLTSRAAQQKNVDV 712 EL+V+ + KLL+WSDQTICY D+ FYVVK A PF++L CR YL SR QQ ++V Sbjct 1428 ELLVQDLRLNKLLHWSDQTICYKDSVFYVVKNSTAFPFETLSACRAYLDSRTTQQLTIEV 1487 Query 713 LVTIDGVNFRTVVLNNTTTYRVQLGSVFYKGSDISDTIPTEKMSGEAVYLADNLSEAEKA 772 LVT+DGVNFRTVVLNN TYR QLG VF+ G+DISDTIP EK +G ++YLADNL+ E Sbjct 1488 LVTVDGVNFRTVVLNNKNTYRSQLGCVFFNGADISDTIPDEKQNGHSLYLADNLTADETK 1547 Query 773 VLSEVYGTADTAFLHRYYSLLALVKKWKYTVHDGVKSLKLNSNNCYVNVTMLMLDMLKEI 832 L E+YG D FLHR+YSL A V KWK V D V+SLKL+ NNCY+N ++ LD+LK+I Sbjct 1548 ALKELYGPVDPTFLHRFYSLKAAVHKWKMVVCDKVRSLKLSDNNCYLNAVIMTLDLLKDI 1607 Query 833 KFIVPALQAAYLKHKGGDSTEFIALIMAYGDCTYGEPDDASRLLHTILSKAELTTQAKMV 892 KF++PALQ A++KHKGGDST+FIALIMAYG+CT+G PDDASRLLHT+L+KAEL A+MV Sbjct 1608 KFVIPALQHAFMKHKGGDSTDFIALIMAYGNCTFGAPDDASRLLHTVLAKAELCCSARMV 1667 Query 893 WRQWCNVCGVQDTTTTGLKACIYVGMNSLDELHATHEECCQCGDVRKRQLVEHNAPWLLL 952 WR+WCNVCG++D GLKAC YVG+ ++++L A CQCG R RQ+VEH PWLLL Sbjct 1668 WREWCNVCGIKDVVLQGLKACCYVGVQTVEDLRARMTYVCQCGGERHRQIVEHTTPWLLL 1727 Query 953 SGLNEAKVMTPTSQSAGPDYTAFNVFQGVETSVGHYLHVRVKDNLLYKYDSGSLSKTSDM 1012 SG K++T S PD+ AFNVFQG+ET+VGHY+H R+K L+ K+DSG++SKTSD Sbjct 1728 SGTPNEKLVT---TSTAPDFVAFNVFQGIETAVGHYVHARLKGGLILKFDSGTVSKTSDW 1784 Query 1013 KCKMTDVYYPKQRYSADCNVVVYSLDGNTWADVDPDLSAFYMKDGKYFTKKPVIEYSPAT 1072 KCK+TDV +P Q+YS+DCNVV YSLDGN +VDPDLSAFY+KDGKYFT +P + YSPAT Sbjct 1785 KCKVTDVLFPGQKYSSDCNVVRYSLDGNFRTEVDPDLSAFYVKDGKYFTSEPPVTYSPAT 1844 Query 1073 ILSGSVYTNSCLVGHDGTIGSDAISSSFNNLLGFDNSKPVSKKLTYSFFPDFEGDVILTE 1132 IL+GSVYTNSCLV DG G DAIS SFNNLLGFD+SKPV+KK TYSF P +GDV+L E Sbjct 1845 ILAGSVYTNSCLVSSDGQPGGDAISLSFNNLLGFDSSKPVTKKYTYSFLPKEDGDVLLAE 1904 Query 1133 YSTYDPIYKNGAMLHGKPILWVNNSKFDSALNKFNRATLRQVYDIAPVTLENKYTVLQDN 1192 + TYDPIYKNGAM GKPILWVN + +D+ LNKFNRA+LRQ++D+AP+ LENK+T L Sbjct 1905 FDTYDPIYKNGAMYKGKPILWVNKASYDTNLNKFNRASLRQIFDVAPIELENKFTPLS-- 1962 Query 1193 QIQQVEVEAPKEDAKPQSPVQVAEDIDNKLPIIKCKGLKKPFVKDGYSFVNDPQGVNVID 1252 ++ VE P D VA + ++ I+KCKGL KPFVKD SFV D G V++ Sbjct 1963 -VESTPVEPPTVDV-------VA--LQQEMTIVKCKGLNKPFVKDNVSFVADDSGTPVVE 2012 Query 1253 TLGIDDLRALYVDRNLRLIVLKENNWSALFNIHTVEKGDLSVIAASGSITRRVKILLGAS 1312 L +DL LYVD ++IVLK+N S++ +HTVE GD++V+AASGS+TR+VK+L AS Sbjct 2013 YLSKEDLHTLYVDPKYQVIVLKDNVLSSMLRLHTVESGDINVVAASGSLTRKVKLLFRAS 2072 Query 1313 SLFAQFASVTVNVTTAMGKALGRMTRNVITNTGIIGQGFALLKMLLILPFTFWKSKNQST 1372 F +FA+ T TTA+G + + R++ GI+ F+ +KML +LP ++ T Sbjct 2073 FYFKEFATRTFTATTAVGSCIKSVVRHLGVTKGILTGCFSFVKMLFMLPLAYFSDSKLGT 2132 Query 1373 VKVEVGALRTAGIVTTNVVKQCASAAYDVLVVKFKRIDWKSTLRLLFLICTTGLLLSSLY 1432 +V+V AL+TAG+VT NVVKQC +AA D+ + K +R+DWKSTLRLL ++CTT +LLSS+Y Sbjct 2133 TEVKVSALKTAGVVTGNVVKQCCTAAVDLSMDKLRRVDWKSTLRLLLMLCTTMVLLSSVY 2192 Query 1433 YLFLFHQVLTSDVMLDGAEGMLATYRELRSYLGIHSLCDGMVEAYRNVSYDVNDFCSNRS 1492 +L++F+QVL+SDVM + A+G+ Y+E+R+YLGI S CDG+ AYR S+DV FC+NRS Sbjct 2193 HLYVFNQVLSSDVMFEDAQGLKKFYKEVRAYLGISSACDGLASAYRANSFDVPTFCANRS 2252 Query 1493 ALCNWCLIGQDSLTRYSAFQMIQTHVTSYVINIDWVWFVMEFALAYVLYTSTFNVLLLVV 1552 A+CNWCLI QDS+T Y A +M+QTH++ YV+NIDW+WF E LAY+LYTS FN LLL Sbjct 2253 AMCNWCLISQDSITHYPALKMVQTHLSHYVLNIDWLWFAFETGLAYMLYTSAFNWLLLAG 2312 Query 1553 SSQYFFSYTGAFVNWRSYNYLVSGYFFCVTHIPLLGLVRIYNFLACLWFLRRFYNHVING 1612 + YFF+ T FV+WRSYNY VS F+ THIP+ GLVR+YN LACLW LR+FY HVING Sbjct 2313 TLHYFFAQTSIFVDWRSYNYAVSSAFWLFTHIPMAGLVRMYNLLACLWLLRKFYQHVING 2372 Query 1613 CKDTACLLCYKRNRLTRVEASTVVCGSKRTFYIVANGGTSFCCRHNWNCVDCDTAGIGNT 1672 CKDTACLLCYKRNRLTRVEASTVVCG KRTFYI ANGG SFC RHNWNCVDCDTAG+GNT Sbjct 2373 CKDTACLLCYKRNRLTRVEASTVVCGGKRTFYITANGGISFCRRHNWNCVDCDTAGVGNT 2432 Query 1673 FICEEVANDLTTSLRRLVKPTDKSHYYVESVTVKDSVVQLHYSREGASCYERYPLCYFTN 1732 FICEEVANDLTT+LRR + TD+SHYYV+SVTVK++VVQ +Y R+G YER+PLC FTN Sbjct 2433 FICEEVANDLTTALRRPINATDRSHYYVDSVTVKETVVQFNYRRDGQPFYERFPLCAFTN 2492 Query 1733 LDKLKFKEVCKTPTGIPEHNFLIYDSSDRGQENLARSACVYYSQVLSKPMLLVDSNMVTT 1792 LDKLKFKEVCKT TGIPE+NF+IYDSSDRGQE+LARSACVYYSQVL K +LLVDS++VT+ Sbjct 2493 LDKLKFKEVCKTTTGIPEYNFIIYDSSDRGQESLARSACVYYSQVLCKSILLVDSSLVTS 2552 Query 1793 VGDSREIASKMLDSYVNSFISLFGVNRDKLDKLVATARDCVKRGDDFQTVIKTFTDAARG 1852 VGDS EIA+KM DS+VNSF+SL+ V RDKL+KL++TARD V+RGD+F +V+ TF DAARG Sbjct 2553 VGDSSEIATKMFDSFVNSFVSLYNVTRDKLEKLISTARDGVRRGDNFHSVLTTFIDAARG 2612 Query 1853 PAGVESDVETSSIVDALQYAYKHDLQLTTEGFNNYVPSYIKPDSVATADLGCLIDLNAAS 1912 PAGVESDVET+ IVD++QYA+KHD+Q+T E +NNYVPSY+KPDSV+T+DLG LID NAAS Sbjct 2613 PAGVESDVETNEIVDSVQYAHKHDIQITNESYNNYVPSYVKPDSVSTSDLGSLIDCNAAS 2672 Query 1913 VNQTSIRNANGACIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLTTSRLRSADNILSVKF 1972 VNQ +RN+NGACIWN++ YMKLSD+LKRQIRIACRKCN+ FRLTTS+LR+ DNILSV+F Sbjct 2673 VNQIVLRNSNGACIWNAAAYMKLSDALKRQIRIACRKCNLAFRLTTSKLRANDNILSVRF 2732 Query 1973 SATKLSG 1979 +A K+ G Sbjct 2733 TANKIVG 2739 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bat CoV 279/2005] Sequence ID: P0C6F5.1 Length: 4388 Range 1: 1358 to 2742 Score:717 bits(1850), Expect:0.0, Method:Compositional matrix adjust., Identities:481/1477(33%), Positives:741/1477(50%), Gaps:108/1477(7%) Query 513 RGIIRNAKSFGFTCFICTDQSANAKLLKGRGVDLTKKTQTVD-GVKYYLYSSKDPLTDII 571 R ++ +A+ IC D A + R + + VD GV+++ Y+SK+P+ II Sbjct 1358 REMLAHAEETRKLMLICMDVKALMSTIHRRYKGIKVQEGIVDYGVRFFFYTSKEPVASII 1417 Query 572 TAANAC-KGICAMPIGYVTHGLDLAQAGQQVKKITVPYVCLLASKDQVPILNSDV--AVQ 628 T N + + MPIGYVTHGL+L +A + ++ + P V ++S D V N + + + Sbjct 1418 TKLNLLNEPLVTMPIGYVTHGLNLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLTSSSK 1477 Query 629 TPEQSFINTVIANGGYHCWHLVTGELIVKGVSYRKLLNWSDQTICYADNKFYVVKGQIAL 688 T E+ FI TV G Y W +G+ GV + L D+ + ++ V I Sbjct 1478 TSEEHFIETVSLAGMYRDWSY-SGQRTELGVEF---LKRGDKVV------YHTVGSPIQF 1527 Query 689 PFDS--LEKCRTYLTSRAAQQKNVDVLVTIDGVNFRTVVLNNTTTYRVQLGSVFYKGSDI 746 D L + + + + V T+D N T +++ + TY Q G + G+D+ Sbjct 1528 HLDGEVLLLDKLKSLLSLREVRTIKVFTTVDNTNLHTQIVDMSMTYGQQFGPTYLDGADV 1587 Query 747 SDTIPTEKMSGEAVYL--ADNLSEAEKAVLSEVYGTADTAFLHRYYSLLALVKKWKYTVH 804 + P K G+ ++ +D+ +E E Y T D +FL RY S L KKWK+ Sbjct 1588 TKIKPHAKHEGKTFFVLPSDDTLRSEAF---EYYHTLDESFLGRYMSALNHTKKWKFPQI 1644 Query 805 DGVKSLKLNSNNCYVNVTMLMLDMLKEIKFIVPALQAAYLKHKGGDSTEFIALIMAYGDC 864 G+ S+K NNCY++ +L L + E+KF PALQ AY + + GD+ F ALI+AY + Sbjct 1645 GGLTSIKWADNNCYLSSVLLALQQI-EVKFNAPALQEAYYRARAGDAANFCALILAYSNR 1703 Query 865 TYGEPDDASRLLHTILSKAELTTQAKMVWRQWCNVCGVQDTTTTGLKACIYVGMNSLDEL 924 T GE D + +L A L + AK V C CG + TT TG++A +Y+G S +EL Sbjct 1704 TVGELGDVRETMTHLLQHANLES-AKRVLNVVCKTCGQKSTTLTGVEAVMYMGTLSYEEL 1762 Query 925 HATHEECCQCGDVRKRQLVEHNAPWLLLSGLNEAKVMTPTSQSAGPDYTAFNVFQGVETS 984 C CG + LV+ + ++++S + + +YT Sbjct 1763 KTGVTIPCICGRDATQYLVQQESSFVMMSAPPSEYTLQQGAFLCANEYTG-------SYQ 1815 Query 985 VGHYLHVRVKDNLLYKYDSGSLSKTSDMKCKMTDVYYPKQRYSADCNVVVYSLDGNTWAD 1044 GHY HV VK+ L Y+ D L+K S+ K +TDV+Y + Y+ V Y LDG + + Sbjct 1816 CGHYTHVTVKETL-YRIDGAYLTKMSEYKGPVTDVFYKEISYTTTIKPVSYKLDGVIYTE 1874 Query 1045 VDPDLSAFYMKDGKYFTKKPVIEYSPATILSGSVYTNSCLVGHDGTIGSDAISSSFNNLL 1104 + P L +Y KD Y+T++P I+ P L + + N L T + + N + Sbjct 1875 IQPKLDEYYKKDNAYYTEQP-IDLVPTQPLPNASFDNFKL-----TCSNTKFADDLNQMT 1928 Query 1105 GFDNSKPVSKKLTYSFFPDFEGDVILTEYSTYDPIYKNGAMLHGKPILWVNNSKFDSALN 1164 GF KP S++L+ +FFPD GDV+ +Y Y +K GA L KPI+W N + Sbjct 1929 GF--KKPASRELSVTFFPDLNGDVVAIDYRHYSASFKKGAKLLHKPIIWHINQTTNKTTY 1986 Query 1165 KFNRATLRQVYDIAPVTLENKYTVLQDNQIQQV-----EVEAPKEDAKPQSPVQVAEDID 1219 K N LR ++ PV N + VL+ Q + E + P + ++P E I+ Sbjct 1987 KPNTWCLRCLWSTKPVETSNSFEVLEVEDTQGMDNLACESQTPTSEEVVENPTIQKEVIE 2046 Query 1220 NKLPIIKCKG--LKKPFVKDGYSFVNDPQGVNVIDTLGIDDLRALYVDRNLRLIVLKENN 1277 + I+ G + KP +GV V LG +DL A YV+ + + K N Sbjct 2047 CDVKTIEVVGNVILKP----------SEEGVKVTQELGHEDLMAAYVEET-SITIKKPNE 2095 Query 1278 WSALFNIHTVEKGDLSVIAASGSITRRVKILLGASSLFAQFASVTVNVTTAMGKALGRMT 1337 S + T+ AA+ + KIL Q A T N + R Sbjct 2096 LSLALGLRTLATHG----AAAINSVPWSKILAYVKPFLGQAAVTTTN-------CIKRCV 2144 Query 1338 RNVITNTGIIGQGFALLKMLLILPFTFWKSKNQSTVKVEVGALRTAGIVTTNVVKQCASA 1397 + V N + LL TF +S N S ++ + + N VK A Sbjct 2145 QRVFNNY------MPYVITLLFQLCTFTRSTN-SRIRASLPT-----TIAKNSVKSVAKL 2192 Query 1398 AYDVLVVKFKRIDWKSTLRLLFLICTTGLLLSSLYYLFLFHQVLTSDVMLDGAEGMLATY 1457 DV + K + + + + L SL Y+ A + Sbjct 2193 CLDVCINYVKSPKFSKLFTIAMWLLLLSICLGSLIYV-------------------TAAF 2233 Query 1458 RELRSYLGIHSLCDGMVEAYRNVS-YDVNDFCSNRSALCNWCLIGQDSLTRYSAFQMIQT 1516 L S LGI S CDG+ E+Y N S DFC S LC+ CL G DSL Y A + IQ Sbjct 2234 GVLLSNLGIPSYCDGVRESYVNSSNVTTMDFCEG-SFLCSVCLNGLDSLDSYPALETIQV 2292 Query 1517 HVTSYVINIDWVWFVMEFALAYVLYTSTFNVLLLVVSSQYFFSYTGAFVNWRSYNYLVSG 1576 ++SY +++ + E+ LAY+L+T F +L L Q FF Y + ++ S ++L+ Sbjct 2293 TISSYKLDLTSLGLAAEWFLAYMLFTKFFYLLGLSAIMQVFFGYFAS--HFISNSWLMWF 2350 Query 1577 YFFCVTHIPLLGLVRIYNFLACLWFLRRFYNHVINGCKDTACLLCYKRNRLTRVEASTVV 1636 V P+ +VR+Y F A +++ + Y H+++GC + C++CYKRNR TRVE +T+V Sbjct 2351 IISIVQMAPVSAMVRMYIFFAFCYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIV 2410 Query 1637 CGSKRTFYIVANGGTSFCCRHNWNCVDCDTAGIGNTFICEEVANDLTTSLRRLVKPTDKS 1696 G KR+FY+ ANGG FC HNWNC++CDT G+TFI +EVA DL+ +R + PTD+S Sbjct 2411 NGMKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQS 2470 Query 1697 HYYVESVTVKDSVVQLHYSREGASCYERYPLCYFTNLDKLKFKEVCKTPTGIPEHNFLIY 1756 Y V+SV VK+ + L++ + G YER+PL +F NLD L+ T +P N +++ Sbjct 2471 SYVVDSVAVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRAN---NTKGSLP-INVIVF 2526 Query 1757 DSSDRGQENLARSACVYYSQVLSKPMLLVDSNMVTTVGDSREIASKMLDSYVNSFISLFG 1816 D + E+ A+SA VYYSQ++ +P+LL+D +V+ VGDS E++ KM D+YV++F + F Sbjct 2527 DGKSKCDESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFS 2586 Query 1817 VNRDKLDKLVATARDCVKRGDDFQTVIKTFTDAARGPAGVESDVETSSIVDALQYAYKHD 1876 V +KL LVATA + +G V+ TF AAR V++DV+T +++ L+ ++ D Sbjct 2587 VPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSD 2645 Query 1877 LQLTTEGFNNYVPSYIKPDSVATADLGCLIDLNAASVNQTSIRNANGACIWNSSDYMKLS 1936 L++T + NN++ +Y K +++ DLG ID NA +N ++ N + IWN DYM LS Sbjct 2646 LEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLS 2705 Query 1937 DSLKRQIRIACRKCNIPFRLTTSRLRSADNILSVKFS 1973 + L++QIR A +K NIPFRLT + R N ++ K S Sbjct 2706 EQLRKQIRSAAKKNNIPFRLTCATTRQVVNAITTKIS 2742 Range 2: 1007 to 1160 Score:144 bits(362), Expect:4e-34, Method:Compositional matrix adjust., Identities:68/154(44%), Positives:101/154(65%), Gaps:0/154(0%) Query 341 HIVLNNDVTLVFGDAIAVARATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDY 400 ++ L ++V + D + A+ + ++VNAAN HLKHGGG+A A+++A+ G +Q ESDDY Sbjct 1007 YLKLTDNVAIKCVDIVKEAQHAKPTVIVNAANVHLKHGGGVAGALNKATNGAMQQESDDY 1066 Query 401 VNFYGPLNVGDSTLLKGHGLATGILHVVGPDARANQDIQLLKRCYKAFNKYPLVVSPLIS 460 + GPL VG S LL GH LA +HVVGP+ A +D+QLLK Y FN ++++PL+S Sbjct 1067 IKKNGPLTVGGSCLLSGHNLAKKCMHVVGPNLNAGEDVQLLKAAYANFNSQDVLLAPLLS 1126 Query 461 AGIFCVEPRVSLEYLLSVVHTKTYVVVNSEKVYN 494 AGIF +P SL+ + V T+ Y VN + +Y+ Sbjct 1127 AGIFGAKPLQSLKMCVETVRTQVYFAVNDQDLYD 1160 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Bat CoV 279/2005] Sequence ID: P0C6V9.1 Length: 7079 Range 1: 1358 to 2742 Score:715 bits(1845), Expect:0.0, Method:Compositional matrix adjust., Identities:481/1477(33%), Positives:741/1477(50%), Gaps:108/1477(7%) Query 513 RGIIRNAKSFGFTCFICTDQSANAKLLKGRGVDLTKKTQTVD-GVKYYLYSSKDPLTDII 571 R ++ +A+ IC D A + R + + VD GV+++ Y+SK+P+ II Sbjct 1358 REMLAHAEETRKLMLICMDVKALMSTIHRRYKGIKVQEGIVDYGVRFFFYTSKEPVASII 1417 Query 572 TAANAC-KGICAMPIGYVTHGLDLAQAGQQVKKITVPYVCLLASKDQVPILNSDV--AVQ 628 T N + + MPIGYVTHGL+L +A + ++ + P V ++S D V N + + + Sbjct 1418 TKLNLLNEPLVTMPIGYVTHGLNLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLTSSSK 1477 Query 629 TPEQSFINTVIANGGYHCWHLVTGELIVKGVSYRKLLNWSDQTICYADNKFYVVKGQIAL 688 T E+ FI TV G Y W +G+ GV + L D+ + ++ V I Sbjct 1478 TSEEHFIETVSLAGMYRDWSY-SGQRTELGVEF---LKRGDKVV------YHTVGSPIQF 1527 Query 689 PFDS--LEKCRTYLTSRAAQQKNVDVLVTIDGVNFRTVVLNNTTTYRVQLGSVFYKGSDI 746 D L + + + + V T+D N T +++ + TY Q G + G+D+ Sbjct 1528 HLDGEVLLLDKLKSLLSLREVRTIKVFTTVDNTNLHTQIVDMSMTYGQQFGPTYLDGADV 1587 Query 747 SDTIPTEKMSGEAVYL--ADNLSEAEKAVLSEVYGTADTAFLHRYYSLLALVKKWKYTVH 804 + P K G+ ++ +D+ +E E Y T D +FL RY S L KKWK+ Sbjct 1588 TKIKPHAKHEGKTFFVLPSDDTLRSEAF---EYYHTLDESFLGRYMSALNHTKKWKFPQI 1644 Query 805 DGVKSLKLNSNNCYVNVTMLMLDMLKEIKFIVPALQAAYLKHKGGDSTEFIALIMAYGDC 864 G+ S+K NNCY++ +L L + E+KF PALQ AY + + GD+ F ALI+AY + Sbjct 1645 GGLTSIKWADNNCYLSSVLLALQQI-EVKFNAPALQEAYYRARAGDAANFCALILAYSNR 1703 Query 865 TYGEPDDASRLLHTILSKAELTTQAKMVWRQWCNVCGVQDTTTTGLKACIYVGMNSLDEL 924 T GE D + +L A L + AK V C CG + TT TG++A +Y+G S +EL Sbjct 1704 TVGELGDVRETMTHLLQHANLES-AKRVLNVVCKTCGQKSTTLTGVEAVMYMGTLSYEEL 1762 Query 925 HATHEECCQCGDVRKRQLVEHNAPWLLLSGLNEAKVMTPTSQSAGPDYTAFNVFQGVETS 984 C CG + LV+ + ++++S + + +YT Sbjct 1763 KTGVTIPCICGRDATQYLVQQESSFVMMSAPPSEYTLQQGAFLCANEYTG-------SYQ 1815 Query 985 VGHYLHVRVKDNLLYKYDSGSLSKTSDMKCKMTDVYYPKQRYSADCNVVVYSLDGNTWAD 1044 GHY HV VK+ L Y+ D L+K S+ K +TDV+Y + Y+ V Y LDG + + Sbjct 1816 CGHYTHVTVKETL-YRIDGAYLTKMSEYKGPVTDVFYKEISYTTTIKPVSYKLDGVIYTE 1874 Query 1045 VDPDLSAFYMKDGKYFTKKPVIEYSPATILSGSVYTNSCLVGHDGTIGSDAISSSFNNLL 1104 + P L +Y KD Y+T++P I+ P L + + N L T + + N + Sbjct 1875 IQPKLDEYYKKDNAYYTEQP-IDLVPTQPLPNASFDNFKL-----TCSNTKFADDLNQMT 1928 Query 1105 GFDNSKPVSKKLTYSFFPDFEGDVILTEYSTYDPIYKNGAMLHGKPILWVNNSKFDSALN 1164 GF KP S++L+ +FFPD GDV+ +Y Y +K GA L KPI+W N + Sbjct 1929 GF--KKPASRELSVTFFPDLNGDVVAIDYRHYSASFKKGAKLLHKPIIWHINQTTNKTTY 1986 Query 1165 KFNRATLRQVYDIAPVTLENKYTVLQDNQIQQV-----EVEAPKEDAKPQSPVQVAEDID 1219 K N LR ++ PV N + VL+ Q + E + P + ++P E I+ Sbjct 1987 KPNTWCLRCLWSTKPVETSNSFEVLEVEDTQGMDNLACESQTPTSEEVVENPTIQKEVIE 2046 Query 1220 NKLPIIKCKG--LKKPFVKDGYSFVNDPQGVNVIDTLGIDDLRALYVDRNLRLIVLKENN 1277 + I+ G + KP +GV V LG +DL A YV+ + + K N Sbjct 2047 CDVKTIEVVGNVILKP----------SEEGVKVTQELGHEDLMAAYVEET-SITIKKPNE 2095 Query 1278 WSALFNIHTVEKGDLSVIAASGSITRRVKILLGASSLFAQFASVTVNVTTAMGKALGRMT 1337 S + T+ AA+ + KIL Q A T N + R Sbjct 2096 LSLALGLRTLATHG----AAAINSVPWSKILAYVKPFLGQAAVTTTN-------CIKRCV 2144 Query 1338 RNVITNTGIIGQGFALLKMLLILPFTFWKSKNQSTVKVEVGALRTAGIVTTNVVKQCASA 1397 + V N + LL TF +S N S ++ + + N VK A Sbjct 2145 QRVFNNY------MPYVITLLFQLCTFTRSTN-SRIRASLPT-----TIAKNSVKSVAKL 2192 Query 1398 AYDVLVVKFKRIDWKSTLRLLFLICTTGLLLSSLYYLFLFHQVLTSDVMLDGAEGMLATY 1457 DV + K + + + + L SL Y+ A + Sbjct 2193 CLDVCINYVKSPKFSKLFTIAMWLLLLSICLGSLIYV-------------------TAAF 2233 Query 1458 RELRSYLGIHSLCDGMVEAYRNVS-YDVNDFCSNRSALCNWCLIGQDSLTRYSAFQMIQT 1516 L S LGI S CDG+ E+Y N S DFC S LC+ CL G DSL Y A + IQ Sbjct 2234 GVLLSNLGIPSYCDGVRESYVNSSNVTTMDFCEG-SFLCSVCLNGLDSLDSYPALETIQV 2292 Query 1517 HVTSYVINIDWVWFVMEFALAYVLYTSTFNVLLLVVSSQYFFSYTGAFVNWRSYNYLVSG 1576 ++SY +++ + E+ LAY+L+T F +L L Q FF Y + ++ S ++L+ Sbjct 2293 TISSYKLDLTSLGLAAEWFLAYMLFTKFFYLLGLSAIMQVFFGYFAS--HFISNSWLMWF 2350 Query 1577 YFFCVTHIPLLGLVRIYNFLACLWFLRRFYNHVINGCKDTACLLCYKRNRLTRVEASTVV 1636 V P+ +VR+Y F A +++ + Y H+++GC + C++CYKRNR TRVE +T+V Sbjct 2351 IISIVQMAPVSAMVRMYIFFAFCYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIV 2410 Query 1637 CGSKRTFYIVANGGTSFCCRHNWNCVDCDTAGIGNTFICEEVANDLTTSLRRLVKPTDKS 1696 G KR+FY+ ANGG FC HNWNC++CDT G+TFI +EVA DL+ +R + PTD+S Sbjct 2411 NGMKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQS 2470 Query 1697 HYYVESVTVKDSVVQLHYSREGASCYERYPLCYFTNLDKLKFKEVCKTPTGIPEHNFLIY 1756 Y V+SV VK+ + L++ + G YER+PL +F NLD L+ T +P N +++ Sbjct 2471 SYVVDSVAVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRAN---NTKGSLPI-NVIVF 2526 Query 1757 DSSDRGQENLARSACVYYSQVLSKPMLLVDSNMVTTVGDSREIASKMLDSYVNSFISLFG 1816 D + E+ A+SA VYYSQ++ +P+LL+D +V+ VGDS E++ KM D+YV++F + F Sbjct 2527 DGKSKCDESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFS 2586 Query 1817 VNRDKLDKLVATARDCVKRGDDFQTVIKTFTDAARGPAGVESDVETSSIVDALQYAYKHD 1876 V +KL LVATA + +G V+ TF AAR V++DV+T +++ L+ ++ D Sbjct 2587 VPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSD 2645 Query 1877 LQLTTEGFNNYVPSYIKPDSVATADLGCLIDLNAASVNQTSIRNANGACIWNSSDYMKLS 1936 L++T + NN++ +Y K +++ DLG ID NA +N ++ N + IWN DYM LS Sbjct 2646 LEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLS 2705 Query 1937 DSLKRQIRIACRKCNIPFRLTTSRLRSADNILSVKFS 1973 + L++QIR A +K NIPFRLT + R N ++ K S Sbjct 2706 EQLRKQIRSAAKKNNIPFRLTCATTRQVVNAITTKIS 2742 Range 2: 1007 to 1160 Score:143 bits(361), Expect:5e-34, Method:Compositional matrix adjust., Identities:68/154(44%), Positives:101/154(65%), Gaps:0/154(0%) Query 341 HIVLNNDVTLVFGDAIAVARATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDY 400 ++ L ++V + D + A+ + ++VNAAN HLKHGGG+A A+++A+ G +Q ESDDY Sbjct 1007 YLKLTDNVAIKCVDIVKEAQHAKPTVIVNAANVHLKHGGGVAGALNKATNGAMQQESDDY 1066 Query 401 VNFYGPLNVGDSTLLKGHGLATGILHVVGPDARANQDIQLLKRCYKAFNKYPLVVSPLIS 460 + GPL VG S LL GH LA +HVVGP+ A +D+QLLK Y FN ++++PL+S Sbjct 1067 IKKNGPLTVGGSCLLSGHNLAKKCMHVVGPNLNAGEDVQLLKAAYANFNSQDVLLAPLLS 1126 Query 461 AGIFCVEPRVSLEYLLSVVHTKTYVVVNSEKVYN 494 AGIF +P SL+ + V T+ Y VN + +Y+ Sbjct 1127 AGIFGAKPLQSLKMCVETVRTQVYFAVNDQDLYD 1160 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; AltName: Full=Leader protein; AltName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like protease nsp3; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinase; Short=PL-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=SARS coronavirus main proteinase; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Severe acute respiratory syndrome coronavirus 2] Sequence ID: P0DTC1.1 Length: 4405 Range 1: 1391 to 2759 Score:714 bits(1843), Expect:0.0, Method:Compositional matrix adjust., Identities:472/1454(32%), Positives:747/1454(51%), Gaps:93/1454(6%) Query 528 ICTDQSANAKLLKGRGVDLTKKTQTVD-GVKYYLYSSKDPLTDIITAANAC-KGICAMPI 585 +C + A ++ + + + VD G ++Y Y+SK + +I N + + MP+ Sbjct 1391 VCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTLNDLNETLVTMPL 1450 Query 586 GYVTHGLDLAQAGQQVKKITVPYVCLLASKDQVPILNSDV--AVQTPEQSFINTVIANGG 643 GYVTHGL+L +A + ++ + VP ++S D V N + + +TPE+ FI T+ G Sbjct 1451 GYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGS 1510 Query 644 YHCWHLVTGELIVKGVSYRKLLNWSDQTICYADNKF-YVVKGQIALPFDSLEKCRTYLTS 702 Y W +G+ G+ + L D+++ Y N + + G++ + FD+L +T L+ Sbjct 1511 YKDWSY-SGQSTQLGIEF---LKRGDKSVYYTSNPTTFHLDGEV-ITFDNL---KTLLSL 1562 Query 703 RAAQQKNVDVLVTIDGVNFRTVVLNNTTTYRVQLGSVFYKGSDISDTIPTEKMSGEAVYL 762 R + + + V T+D +N T V++ + TY Q G + G+D++ P G+ Y+ Sbjct 1563 R--EVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYV 1620 Query 763 ADNLSEAEKAVLSEVYGTADTAFLHRYYSLLALVKKWKYTVHDGVKSLKLNSNNCYVNVT 822 N + + E Y T D +FL RY S L KKWKY +G+ S+K NNCY+ Sbjct 1621 LPN-DDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATA 1679 Query 823 MLMLDMLKEIKFIVPALQAAYLKHKGGDSTEFIALIMAYGDCTYGEPDDASRLLHTILSK 882 +L L + E+KF PALQ AY + + G++ F ALI+AY + T GE D + + Sbjct 1680 LLTLQQI-ELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQH 1738 Query 883 AELTTQAKMVWRQWCNVCGVQDTTTTGLKACIYVGMNSLDELHATHEECCQCGDVRKRQL 942 A L + K V C CG Q TT G++A +Y+G S ++ + C CG + L Sbjct 1739 ANLDS-CKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYL 1797 Query 943 VEHNAPWLLLSGLNEAKVMTPTSQSAGPDYTAFNVFQGVETSVGHYLHVRVKDNLLYKYD 1002 V+ +P++++S + + + +YT GHY H+ K+ L Y D Sbjct 1798 VQQESPFVMMSAPPAQYELKHGTFTCASEYTG-------NYQCGHYKHITSKETL-YCID 1849 Query 1003 SGSLSKTSDMKCKMTDVYYPKQRYSADCNVVVYSLDGNTWADVDPDLSAFYMKDGKYFTK 1062 L+K+S+ K +TDV+Y + Y+ V Y LDG ++DP L +Y KD YFT+ Sbjct 1850 GALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTE 1909 Query 1063 KPVIEYSPATILSGSVYTNSCLVGHDGTIGSDAISSSFNNLLGFDNSKPVSKKLTYSFFP 1122 +P+ ++ Y N+ + + N L G+ KP S++L +FFP Sbjct 1910 QPI------DLVPNQPYPNASFDNFKFVCDNIKFADDLNQLTGY--KKPASRELKVTFFP 1961 Query 1123 DFEGDVILTEYSTYDPIYKNGAMLHGKPILWVNNSKFDSALNKFNRATLRQVYDIAPVTL 1182 D GDV+ +Y Y P +K GA L KPI+W N+ + A K N +R ++ PV Sbjct 1962 DLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVET 2021 Query 1183 ENKYTVLQDNQIQQVEVEAPKEDAKPQSPVQVAEDIDNKLPIIKCKGLKKPFVKDGYSFV 1242 N + VL+ Q ++ A ED KP S +V E+ + +++C V D + Sbjct 2022 SNSFDVLKSEDAQGMDNLAC-EDLKPVSE-EVVENPTIQKDVLECNVKTTEVVGD---II 2076 Query 1243 NDP--QGVNVIDTLGIDDLRALYVDRNLRLIVLKENNWSALFNIHTVEKGDLSVIAASGS 1300 P + + + +G DL A YVD N L + K N S + + T+ L+ + + Sbjct 2077 LKPANNSLKITEEVGHTDLMAAYVD-NSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPW 2135 Query 1301 ITRRVKILLGASSLFAQFASVTVNVTTAMGKALGRMTRNVITNTGIIGQGFALLKMLLIL 1360 T I A + S T N+ T + L R+ N + F LL L Sbjct 2136 DT----IANYAKPFLNKVVSTTTNIVT---RCLNRVCTNYMP------YFFTLLLQLC-- 2180 Query 1361 PFTFWKSKNQSTVKVEVGALRTAGIVTTNVVKQCASAAYDVLVVKFKRIDWKSTLRLLFL 1420 TF +S N S +K + V + V K C A+++ L K ++ + ++ Sbjct 2181 --TFTRSTN-SRIKASMPTTIAKNTVKS-VGKFCLEASFNYL----KSPNFSKLINIIIW 2232 Query 1421 ICTTGLLLSSLYYLFLFHQVLTSDVMLDGAEGMLATYRELRSYLGIHSLCDGMVEAYRN- 1479 + L SL Y A L S LG+ S C G E Y N Sbjct 2233 FLLLSVCLGSLIY-------------------STAALGVLMSNLGMPSYCTGYREGYLNS 2273 Query 1480 VSYDVNDFCSNRSALCNWCLIGQDSLTRYSAFQMIQTHVTSYVINIDWVWFVMEFALAYV 1539 + + +C+ S C+ CL G DSL Y + + IQ ++S+ ++ V E+ LAY+ Sbjct 2274 TNVTIATYCTG-SIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYI 2332 Query 1540 LYTSTFNVLLLVVSSQYFFSYTGAFVNWRSYNYLVSGYFFCVTHIPLLGLVRIYNFLACL 1599 L+T F VL L Q FFSY V++ S ++L+ V P+ +VR+Y F A Sbjct 2333 LFTRFFYVLGLAAIMQLFFSYFA--VHFISNSWLMWLIINLVQMAPISAMVRMYIFFASF 2390 Query 1600 WFLRRFYNHVINGCKDTACLLCYKRNRLTRVEASTVVCGSKRTFYIVANGGTSFCCRHNW 1659 +++ + Y HV++GC + C++CYKRNR TRVE +T+V G +R+FY+ ANGG FC HNW Sbjct 2391 YYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNW 2450 Query 1660 NCVDCDTAGIGNTFICEEVANDLTTSLRRLVKPTDKSHYYVESVTVKDSVVQLHYSREGA 1719 NCV+CDT G+TFI +EVA DL+ +R + PTD+S Y V+SVTVK+ + L++ + G Sbjct 2451 NCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQ 2510 Query 1720 SCYERYPLCYFTNLDKLKFKEVCKTPTGIPEHNFLIYDSSDRGQENLARSACVYYSQVLS 1779 YER+ L +F NLD L+ T +P N +++D + +E+ A+SA VYYSQ++ Sbjct 2511 KTYERHSLSHFVNLDNLRAN---NTKGSLP-INVIVFDGKSKCEESSAKSASVYYSQLMC 2566 Query 1780 KPMLLVDSNMVTTVGDSREIASKMLDSYVNSFISLFGVNRDKLDKLVATARDCVKRGDDF 1839 +P+LL+D +V+ VGDS E+A KM D+YVN+F S F V +KL LVATA + + Sbjct 2567 QPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSL 2626 Query 1840 QTVIKTFTDAARGPAGVESDVETSSIVDALQYAYKHDLQLTTEGFNNYVPSYIKPDSVAT 1899 V+ TF AAR V+SDVET +V+ L+ +++ D+++T + NNY+ +Y K +++ Sbjct 2627 DNVLSTFISAAR-QGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTP 2685 Query 1900 ADLGCLIDLNAASVNQTSIRNANGACIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLTTS 1959 DLG ID +A +N ++ N A IWN D+M LS+ L++QIR A +K N+PF+LT + Sbjct 2686 RDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCA 2745 Query 1960 RLRSADNILSVKFS 1973 R N+++ K + Sbjct 2746 TTRQVVNVVTTKIA 2759 Range 2: 1031 to 1188 Score:138 bits(347), Expect:2e-32, Method:Compositional matrix adjust., Identities:66/158(42%), Positives:102/158(64%), Gaps:0/158(0%) Query 341 HIVLNNDVTLVFGDAIAVARATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDY 400 ++ L ++V + D + A+ + ++VNAAN +LKHGGG+A A+++A+ +Q ESDDY Sbjct 1031 YLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDY 1090 Query 401 VNFYGPLNVGDSTLLKGHGLATGILHVVGPDARANQDIQLLKRCYKAFNKYPLVVSPLIS 460 + GPL VG S +L GH LA LHVVGP+ +DIQLLK Y+ FN++ ++++PL+S Sbjct 1091 IATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLS 1150 Query 461 AGIFCVEPRVSLEYLLSVVHTKTYVVVNSEKVYNDLAA 498 AGIF +P SL + V T Y+ V + +Y+ L + Sbjct 1151 AGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVS 1188 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; AltName: Full=Leader protein; AltName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like protease nsp3; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinase; Short=PL-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=SARS coronavirus main proteinase; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=Non-structural protein 12; Short=nsp12; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=Non-structural protein 13; Short=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; AltName: Full=Non-structural protein 14; Short=nsp14; AltName: Full=Proofreading exoribonuclease nsp14; Short=ExoN; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=Non-structural protein 15; Short=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=Non-structural protein 16; Short=nsp16 [Severe acute respiratory syndrome coronavirus 2] Sequence ID: P0DTD1.1 Length: 7096 Range 1: 1391 to 2759 Score:711 bits(1836), Expect:0.0, Method:Compositional matrix adjust., Identities:472/1454(32%), Positives:747/1454(51%), Gaps:93/1454(6%) Query 528 ICTDQSANAKLLKGRGVDLTKKTQTVD-GVKYYLYSSKDPLTDIITAANAC-KGICAMPI 585 +C + A ++ + + + VD G ++Y Y+SK + +I N + + MP+ Sbjct 1391 VCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTLNDLNETLVTMPL 1450 Query 586 GYVTHGLDLAQAGQQVKKITVPYVCLLASKDQVPILNSDV--AVQTPEQSFINTVIANGG 643 GYVTHGL+L +A + ++ + VP ++S D V N + + +TPE+ FI T+ G Sbjct 1451 GYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGS 1510 Query 644 YHCWHLVTGELIVKGVSYRKLLNWSDQTICYADNKF-YVVKGQIALPFDSLEKCRTYLTS 702 Y W +G+ G+ + L D+++ Y N + + G++ + FD+L +T L+ Sbjct 1511 YKDWSY-SGQSTQLGIEF---LKRGDKSVYYTSNPTTFHLDGEV-ITFDNL---KTLLSL 1562 Query 703 RAAQQKNVDVLVTIDGVNFRTVVLNNTTTYRVQLGSVFYKGSDISDTIPTEKMSGEAVYL 762 R + + + V T+D +N T V++ + TY Q G + G+D++ P G+ Y+ Sbjct 1563 R--EVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYV 1620 Query 763 ADNLSEAEKAVLSEVYGTADTAFLHRYYSLLALVKKWKYTVHDGVKSLKLNSNNCYVNVT 822 N + + E Y T D +FL RY S L KKWKY +G+ S+K NNCY+ Sbjct 1621 LPN-DDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATA 1679 Query 823 MLMLDMLKEIKFIVPALQAAYLKHKGGDSTEFIALIMAYGDCTYGEPDDASRLLHTILSK 882 +L L + E+KF PALQ AY + + G++ F ALI+AY + T GE D + + Sbjct 1680 LLTLQQI-ELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQH 1738 Query 883 AELTTQAKMVWRQWCNVCGVQDTTTTGLKACIYVGMNSLDELHATHEECCQCGDVRKRQL 942 A L + K V C CG Q TT G++A +Y+G S ++ + C CG + L Sbjct 1739 ANLDS-CKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYL 1797 Query 943 VEHNAPWLLLSGLNEAKVMTPTSQSAGPDYTAFNVFQGVETSVGHYLHVRVKDNLLYKYD 1002 V+ +P++++S + + + +YT GHY H+ K+ L Y D Sbjct 1798 VQQESPFVMMSAPPAQYELKHGTFTCASEYTG-------NYQCGHYKHITSKETL-YCID 1849 Query 1003 SGSLSKTSDMKCKMTDVYYPKQRYSADCNVVVYSLDGNTWADVDPDLSAFYMKDGKYFTK 1062 L+K+S+ K +TDV+Y + Y+ V Y LDG ++DP L +Y KD YFT+ Sbjct 1850 GALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTE 1909 Query 1063 KPVIEYSPATILSGSVYTNSCLVGHDGTIGSDAISSSFNNLLGFDNSKPVSKKLTYSFFP 1122 +P+ ++ Y N+ + + N L G+ KP S++L +FFP Sbjct 1910 QPI------DLVPNQPYPNASFDNFKFVCDNIKFADDLNQLTGY--KKPASRELKVTFFP 1961 Query 1123 DFEGDVILTEYSTYDPIYKNGAMLHGKPILWVNNSKFDSALNKFNRATLRQVYDIAPVTL 1182 D GDV+ +Y Y P +K GA L KPI+W N+ + A K N +R ++ PV Sbjct 1962 DLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVET 2021 Query 1183 ENKYTVLQDNQIQQVEVEAPKEDAKPQSPVQVAEDIDNKLPIIKCKGLKKPFVKDGYSFV 1242 N + VL+ Q ++ A ED KP S +V E+ + +++C V D + Sbjct 2022 SNSFDVLKSEDAQGMDNLAC-EDLKPVSE-EVVENPTIQKDVLECNVKTTEVVGD---II 2076 Query 1243 NDP--QGVNVIDTLGIDDLRALYVDRNLRLIVLKENNWSALFNIHTVEKGDLSVIAASGS 1300 P + + + +G DL A YVD N L + K N S + + T+ L+ + + Sbjct 2077 LKPANNSLKITEEVGHTDLMAAYVD-NSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPW 2135 Query 1301 ITRRVKILLGASSLFAQFASVTVNVTTAMGKALGRMTRNVITNTGIIGQGFALLKMLLIL 1360 T I A + S T N+ T + L R+ N + F LL L Sbjct 2136 DT----IANYAKPFLNKVVSTTTNIVT---RCLNRVCTNYMP------YFFTLLLQLC-- 2180 Query 1361 PFTFWKSKNQSTVKVEVGALRTAGIVTTNVVKQCASAAYDVLVVKFKRIDWKSTLRLLFL 1420 TF +S N S +K + V + V K C A+++ L K ++ + ++ Sbjct 2181 --TFTRSTN-SRIKASMPTTIAKNTVKS-VGKFCLEASFNYL----KSPNFSKLINIIIW 2232 Query 1421 ICTTGLLLSSLYYLFLFHQVLTSDVMLDGAEGMLATYRELRSYLGIHSLCDGMVEAYRN- 1479 + L SL Y A L S LG+ S C G E Y N Sbjct 2233 FLLLSVCLGSLIY-------------------STAALGVLMSNLGMPSYCTGYREGYLNS 2273 Query 1480 VSYDVNDFCSNRSALCNWCLIGQDSLTRYSAFQMIQTHVTSYVINIDWVWFVMEFALAYV 1539 + + +C+ S C+ CL G DSL Y + + IQ ++S+ ++ V E+ LAY+ Sbjct 2274 TNVTIATYCTG-SIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYI 2332 Query 1540 LYTSTFNVLLLVVSSQYFFSYTGAFVNWRSYNYLVSGYFFCVTHIPLLGLVRIYNFLACL 1599 L+T F VL L Q FFSY V++ S ++L+ V P+ +VR+Y F A Sbjct 2333 LFTRFFYVLGLAAIMQLFFSYFA--VHFISNSWLMWLIINLVQMAPISAMVRMYIFFASF 2390 Query 1600 WFLRRFYNHVINGCKDTACLLCYKRNRLTRVEASTVVCGSKRTFYIVANGGTSFCCRHNW 1659 +++ + Y HV++GC + C++CYKRNR TRVE +T+V G +R+FY+ ANGG FC HNW Sbjct 2391 YYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNW 2450 Query 1660 NCVDCDTAGIGNTFICEEVANDLTTSLRRLVKPTDKSHYYVESVTVKDSVVQLHYSREGA 1719 NCV+CDT G+TFI +EVA DL+ +R + PTD+S Y V+SVTVK+ + L++ + G Sbjct 2451 NCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQ 2510 Query 1720 SCYERYPLCYFTNLDKLKFKEVCKTPTGIPEHNFLIYDSSDRGQENLARSACVYYSQVLS 1779 YER+ L +F NLD L+ T +P N +++D + +E+ A+SA VYYSQ++ Sbjct 2511 KTYERHSLSHFVNLDNLRAN---NTKGSLPI-NVIVFDGKSKCEESSAKSASVYYSQLMC 2566 Query 1780 KPMLLVDSNMVTTVGDSREIASKMLDSYVNSFISLFGVNRDKLDKLVATARDCVKRGDDF 1839 +P+LL+D +V+ VGDS E+A KM D+YVN+F S F V +KL LVATA + + Sbjct 2567 QPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSL 2626 Query 1840 QTVIKTFTDAARGPAGVESDVETSSIVDALQYAYKHDLQLTTEGFNNYVPSYIKPDSVAT 1899 V+ TF AAR V+SDVET +V+ L+ +++ D+++T + NNY+ +Y K +++ Sbjct 2627 DNVLSTFISAAR-QGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTP 2685 Query 1900 ADLGCLIDLNAASVNQTSIRNANGACIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLTTS 1959 DLG ID +A +N ++ N A IWN D+M LS+ L++QIR A +K N+PF+LT + Sbjct 2686 RDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCA 2745 Query 1960 RLRSADNILSVKFS 1973 R N+++ K + Sbjct 2746 TTRQVVNVVTTKIA 2759 Range 2: 1031 to 1188 Score:137 bits(346), Expect:3e-32, Method:Compositional matrix adjust., Identities:66/158(42%), Positives:102/158(64%), Gaps:0/158(0%) Query 341 HIVLNNDVTLVFGDAIAVARATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDY 400 ++ L ++V + D + A+ + ++VNAAN +LKHGGG+A A+++A+ +Q ESDDY Sbjct 1031 YLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDY 1090 Query 401 VNFYGPLNVGDSTLLKGHGLATGILHVVGPDARANQDIQLLKRCYKAFNKYPLVVSPLIS 460 + GPL VG S +L GH LA LHVVGP+ +DIQLLK Y+ FN++ ++++PL+S Sbjct 1091 IATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLS 1150 Query 461 AGIFCVEPRVSLEYLLSVVHTKTYVVVNSEKVYNDLAA 498 AGIF +P SL + V T Y+ V + +Y+ L + Sbjct 1151 AGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVS 1188 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bat SARS coronavirus HKU3] Sequence ID: P0C6F8.1 Length: 4376 Range 1: 1361 to 2730 Score:709 bits(1830), Expect:0.0, Method:Compositional matrix adjust., Identities:472/1456(32%), Positives:736/1456(50%), Gaps:96/1456(6%) Query 528 ICTDQSANAKLLKGRGVDLTKKTQTVD-GVKYYLYSSKDPLTDIITAANAC-KGICAMPI 585 IC D A ++ + + + VD GV+++ Y+SK+P+ IIT N+ + + MPI Sbjct 1361 ICLDVRAIMATIQRKYKGIKVQEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPI 1420 Query 586 GYVTHGLDLAQAGQQVKKITVPYVCLLASKDQVPILNSDV--AVQTPEQSFINTVIANGG 643 GYVTHGL+L +A + ++ + P V ++S D V N + + +TPE+ F+ T G Sbjct 1421 GYVTHGLNLEEAARCMRSLKAPAVVSVSSPDAVTAYNGYLTSSSKTPEEYFVETTSLAGS 1480 Query 644 YHCWHLVTGELIVKGVSYRKLLNWSDQTICYADNKFYVVKG---QIALPFDSLEKCRTYL 700 Y W +G+ GV + K D Y G + L + L + Sbjct 1481 YRDWSY-SGQRTELGVEFLK----------RGDKIVYHTTGSPIEFHLDGEVLPLDKLKS 1529 Query 701 TSRAAQQKNVDVLVTIDGVNFRTVVLNNTTTYRVQLGSVFYKGSDISDTIPTEKMSGEAV 760 + K + V T+D N T +++ + TY Q G + G+D++ P G+ Sbjct 1530 LLSLREVKTIKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTF 1589 Query 761 YL--ADNLSEAEKAVLSEVYGTADTAFLHRYYSLLALVKKWKYTVHDGVKSLKLNSNNCY 818 ++ +D+ +E E Y T D +FL RY S L KKWK+ G+ S+K NNCY Sbjct 1590 FVLPSDDTLRSEAF---EYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCY 1646 Query 819 VNVTMLMLDMLKEIKFIVPALQAAYLKHKGGDSTEFIALIMAYGDCTYGEPDDASRLLHT 878 ++ +L L + E+KF PALQ AY + + GD+ F ALI+AY + T GE D + Sbjct 1647 LSSVLLALQQV-EVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTH 1705 Query 879 ILSKAELTTQAKMVWRQWCNVCGVQDTTTTGLKACIYVGMNSLDELHATHEECCQCGDVR 938 +L A L + AK V C CG + TT G++A +Y+G S DEL C CG Sbjct 1706 LLQHANLES-AKRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNA 1764 Query 939 KRQLVEHNAPWLLLSGLNEAKVMTPTSQSAGPDYTAFNVFQGVETSVGHYLHVRVKDNLL 998 + LV+ + ++++S + + +YT GHY H+ K+ L Sbjct 1765 TQYLVQQESSFVMMSAPPAEYKLQQGAFLCANEYTG-------NYQCGHYTHITAKETL- 1816 Query 999 YKYDSGSLSKTSDMKCKMTDVYYPKQRYSADCNVVVYSLDGNTWADVDPDLSAFYMKDGK 1058 Y+ D L+K S+ K +TDV+Y + Y+ V Y LDG T+ +++P L +Y K Sbjct 1817 YRVDGAHLTKMSEYKGPVTDVFYKETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNA 1876 Query 1059 YFTKKPVIEYSPATILSGSVYTNSCLVGHDGTIGSDAISSSFNNLLGFDNSKPVSKKLTY 1118 Y+T++P I+ P + + + N L T + + N + GF KP S++LT Sbjct 1877 YYTEQP-IDLVPTQPMPNASFDNFKL-----TCSNTKFADDLNQMTGF--KKPASRELTV 1928 Query 1119 SFFPDFEGDVILTEYSTYDPIYKNGAMLHGKPILWVNNSKFDSALNKFNRATLRQVYDIA 1178 +FFPD GDV+ +Y Y +K GA L KPILW N + K N LR ++ Sbjct 1929 TFFPDLNGDVVAIDYRHYSTSFKKGAKLVHKPILWHINQTTNKTTYKPNIWCLRCLWSTK 1988 Query 1179 PVTLENKYTVLQDNQIQQVEVEAPKEDAKPQSPVQVAEDIDNKLPIIKCKGLKKPFVKDG 1238 PV N + VL Q ++ A +++ + +V E+ + II+C +K V Sbjct 1989 PVDTSNSFEVLVVEDTQGMDNLAC--ESQTTTSEEVVENPTVQKEIIECD-VKTTEVVGN 2045 Query 1239 YSFVNDPQGVNVIDTLGIDDLRALYVDRNLRLIVLKENNWSALFNIHTVEKGDLSVIAAS 1298 +GV V LG +DL A YV+ + + K N S + T+ AA+ Sbjct 2046 VILKPSEEGVKVTQELGHEDLMAAYVEET-SITIKKPNELSLALGLKTLATHG----AAA 2100 Query 1299 GSITRRVKILLGASSLFAQFASVTVNVTTAMGKALGRMTRNVITNTGIIGQGFALLKMLL 1358 + KIL Q A +T N + K + R+ N + + LL Sbjct 2101 INSVPWSKILAYVKPFLGQTAVITSN---CIKKCVQRVFSNYM----------PYVITLL 2147 Query 1359 ILPFTFWKSKNQSTVKVEVGALRTAGIVTTNVVKQCASAAYDVLVVKFKRIDWKSTLRLL 1418 TF KS N S +K + + N VK A DV + K + ++ Sbjct 2148 FQLCTFTKSTN-SRIKASLPT-----TIAKNSVKSVAKLCLDVCINYVKSPKFSKLFTIV 2201 Query 1419 FLICTTGLLLSSLYYLFLFHQVLTSDVMLDGAEGMLATYRELRSYLGIHSLCDGMVEAYR 1478 + + L SL Y+ V S LG+ S CDG+ E Y Sbjct 2202 MWLLLLSICLGSLTYVTAVLGVCLSS-------------------LGVPSYCDGVRELYI 2242 Query 1479 NVS-YDVNDFCSNRSALCNWCLIGQDSLTRYSAFQMIQTHVTSYVINIDWVWFVMEFALA 1537 N S DFC C+ CL G DSL Y A + IQ ++SY +++ ++ E+ LA Sbjct 2243 NSSNVTTMDFCQGYFP-CSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLA 2301 Query 1538 YVLYTSTFNVLLLVVSSQYFFSYTGAFVNWRSYNYLVSGYFFCVTHIPLLGLVRIYNFLA 1597 Y+L+T F +L L Q FF Y + ++ S ++L+ V P+ +VR+Y F A Sbjct 2302 YMLFTKFFYLLGLSAIMQAFFGYFAS--HFISNSWLMWFIISIVQMAPVSAMVRMYIFFA 2359 Query 1598 CLWFLRRFYNHVINGCKDTACLLCYKRNRLTRVEASTVVCGSKRTFYIVANGGTSFCCRH 1657 +++ + Y H+++GC + C++CYKRNR TRVE +T+V G KR+FY+ ANGG FC H Sbjct 2360 SFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAH 2419 Query 1658 NWNCVDCDTAGIGNTFICEEVANDLTTSLRRLVKPTDKSHYYVESVTVKDSVVQLHYSRE 1717 NWNC++CDT G+TFI +EVA DL+ +R + PTD+S Y V+SVTVK+ + L++ + Sbjct 2420 NWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKA 2479 Query 1718 GASCYERYPLCYFTNLDKLKFKEVCKTPTGIPEHNFLIYDSSDRGQENLARSACVYYSQV 1777 G YER+PL +F NLD L+ T +P N +++D + +E+ A+SA VYYSQ+ Sbjct 2480 GQKTYERHPLSHFVNLDNLRAN---NTKGSLP-INVIVFDGKSKCEESAAKSASVYYSQL 2535 Query 1778 LSKPMLLVDSNMVTTVGDSREIASKMLDSYVNSFISLFGVNRDKLDKLVATARDCVKRGD 1837 + +P+LL+D +V+ VGDS E++ KM D+YV++F + F V +KL LVATA + +G Sbjct 2536 MCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGV 2595 Query 1838 DFQTVIKTFTDAARGPAGVESDVETSSIVDALQYAYKHDLQLTTEGFNNYVPSYIKPDSV 1897 V+ TF AAR V++DV+T +++ L+ ++ D+++T + NN++ +Y K +++ Sbjct 2596 ALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFMLTYNKVENM 2654 Query 1898 ATADLGCLIDLNAASVNQTSIRNANGACIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLT 1957 DLG ID NA +N ++ N + +WN DYM LS+ L++QIR A +K NIPFRLT Sbjct 2655 TPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLT 2714 Query 1958 TSRLRSADNILSVKFS 1973 + R N+++ K S Sbjct 2715 CATTRQVVNVITTKIS 2730 Range 2: 1004 to 1159 Score:150 bits(380), Expect:3e-36, Method:Compositional matrix adjust., Identities:70/156(45%), Positives:108/156(69%), Gaps:0/156(0%) Query 341 HIVLNNDVTLVFGDAIAVARATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDY 400 ++ L ++V + D + A++ + ++VNAANTHLKHGGG+A A+++A+ G +Q ESD+Y Sbjct 1004 YLKLTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEY 1063 Query 401 VNFYGPLNVGDSTLLKGHGLATGILHVVGPDARANQDIQLLKRCYKAFNKYPLVVSPLIS 460 + GPL VG S LL GH LA LHVVGP+ A +D+QLLKR Y+ FN ++++PL+S Sbjct 1064 IRQNGPLTVGGSCLLSGHNLAEKCLHVVGPNLNAGEDVQLLKRAYENFNSQDVLLAPLLS 1123 Query 461 AGIFCVEPRVSLEYLLSVVHTKTYVVVNSEKVYNDL 496 AGIF +P SL+ + +V T+ Y+ VN + +Y+ + Sbjct 1124 AGIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQI 1159 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Bat SARS coronavirus HKU3] Sequence ID: P0C6W2.1 Length: 7067 Range 1: 1361 to 2730 Score:707 bits(1825), Expect:0.0, Method:Compositional matrix adjust., Identities:472/1456(32%), Positives:736/1456(50%), Gaps:96/1456(6%) Query 528 ICTDQSANAKLLKGRGVDLTKKTQTVD-GVKYYLYSSKDPLTDIITAANAC-KGICAMPI 585 IC D A ++ + + + VD GV+++ Y+SK+P+ IIT N+ + + MPI Sbjct 1361 ICLDVRAIMATIQRKYKGIKVQEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPI 1420 Query 586 GYVTHGLDLAQAGQQVKKITVPYVCLLASKDQVPILNSDV--AVQTPEQSFINTVIANGG 643 GYVTHGL+L +A + ++ + P V ++S D V N + + +TPE+ F+ T G Sbjct 1421 GYVTHGLNLEEAARCMRSLKAPAVVSVSSPDAVTAYNGYLTSSSKTPEEYFVETTSLAGS 1480 Query 644 YHCWHLVTGELIVKGVSYRKLLNWSDQTICYADNKFYVVKG---QIALPFDSLEKCRTYL 700 Y W +G+ GV + K D Y G + L + L + Sbjct 1481 YRDWSY-SGQRTELGVEFLK----------RGDKIVYHTTGSPIEFHLDGEVLPLDKLKS 1529 Query 701 TSRAAQQKNVDVLVTIDGVNFRTVVLNNTTTYRVQLGSVFYKGSDISDTIPTEKMSGEAV 760 + K + V T+D N T +++ + TY Q G + G+D++ P G+ Sbjct 1530 LLSLREVKTIKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTF 1589 Query 761 YL--ADNLSEAEKAVLSEVYGTADTAFLHRYYSLLALVKKWKYTVHDGVKSLKLNSNNCY 818 ++ +D+ +E E Y T D +FL RY S L KKWK+ G+ S+K NNCY Sbjct 1590 FVLPSDDTLRSEAF---EYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCY 1646 Query 819 VNVTMLMLDMLKEIKFIVPALQAAYLKHKGGDSTEFIALIMAYGDCTYGEPDDASRLLHT 878 ++ +L L + E+KF PALQ AY + + GD+ F ALI+AY + T GE D + Sbjct 1647 LSSVLLALQQV-EVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTH 1705 Query 879 ILSKAELTTQAKMVWRQWCNVCGVQDTTTTGLKACIYVGMNSLDELHATHEECCQCGDVR 938 +L A L + AK V C CG + TT G++A +Y+G S DEL C CG Sbjct 1706 LLQHANLES-AKRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNA 1764 Query 939 KRQLVEHNAPWLLLSGLNEAKVMTPTSQSAGPDYTAFNVFQGVETSVGHYLHVRVKDNLL 998 + LV+ + ++++S + + +YT GHY H+ K+ L Sbjct 1765 TQYLVQQESSFVMMSAPPAEYKLQQGAFLCANEYTG-------NYQCGHYTHITAKETL- 1816 Query 999 YKYDSGSLSKTSDMKCKMTDVYYPKQRYSADCNVVVYSLDGNTWADVDPDLSAFYMKDGK 1058 Y+ D L+K S+ K +TDV+Y + Y+ V Y LDG T+ +++P L +Y K Sbjct 1817 YRVDGAHLTKMSEYKGPVTDVFYKETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNA 1876 Query 1059 YFTKKPVIEYSPATILSGSVYTNSCLVGHDGTIGSDAISSSFNNLLGFDNSKPVSKKLTY 1118 Y+T++P I+ P + + + N L T + + N + GF KP S++LT Sbjct 1877 YYTEQP-IDLVPTQPMPNASFDNFKL-----TCSNTKFADDLNQMTGF--KKPASRELTV 1928 Query 1119 SFFPDFEGDVILTEYSTYDPIYKNGAMLHGKPILWVNNSKFDSALNKFNRATLRQVYDIA 1178 +FFPD GDV+ +Y Y +K GA L KPILW N + K N LR ++ Sbjct 1929 TFFPDLNGDVVAIDYRHYSTSFKKGAKLVHKPILWHINQTTNKTTYKPNIWCLRCLWSTK 1988 Query 1179 PVTLENKYTVLQDNQIQQVEVEAPKEDAKPQSPVQVAEDIDNKLPIIKCKGLKKPFVKDG 1238 PV N + VL Q ++ A +++ + +V E+ + II+C +K V Sbjct 1989 PVDTSNSFEVLVVEDTQGMDNLAC--ESQTTTSEEVVENPTVQKEIIECD-VKTTEVVGN 2045 Query 1239 YSFVNDPQGVNVIDTLGIDDLRALYVDRNLRLIVLKENNWSALFNIHTVEKGDLSVIAAS 1298 +GV V LG +DL A YV+ + + K N S + T+ AA+ Sbjct 2046 VILKPSEEGVKVTQELGHEDLMAAYVEET-SITIKKPNELSLALGLKTLATHG----AAA 2100 Query 1299 GSITRRVKILLGASSLFAQFASVTVNVTTAMGKALGRMTRNVITNTGIIGQGFALLKMLL 1358 + KIL Q A +T N + K + R+ N + + LL Sbjct 2101 INSVPWSKILAYVKPFLGQTAVITSN---CIKKCVQRVFSNYM----------PYVITLL 2147 Query 1359 ILPFTFWKSKNQSTVKVEVGALRTAGIVTTNVVKQCASAAYDVLVVKFKRIDWKSTLRLL 1418 TF KS N S +K + + N VK A DV + K + ++ Sbjct 2148 FQLCTFTKSTN-SRIKASLPT-----TIAKNSVKSVAKLCLDVCINYVKSPKFSKLFTIV 2201 Query 1419 FLICTTGLLLSSLYYLFLFHQVLTSDVMLDGAEGMLATYRELRSYLGIHSLCDGMVEAYR 1478 + + L SL Y+ V S LG+ S CDG+ E Y Sbjct 2202 MWLLLLSICLGSLTYVTAVLGVCLSS-------------------LGVPSYCDGVRELYI 2242 Query 1479 NVS-YDVNDFCSNRSALCNWCLIGQDSLTRYSAFQMIQTHVTSYVINIDWVWFVMEFALA 1537 N S DFC C+ CL G DSL Y A + IQ ++SY +++ ++ E+ LA Sbjct 2243 NSSNVTTMDFCQGYFP-CSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLA 2301 Query 1538 YVLYTSTFNVLLLVVSSQYFFSYTGAFVNWRSYNYLVSGYFFCVTHIPLLGLVRIYNFLA 1597 Y+L+T F +L L Q FF Y + ++ S ++L+ V P+ +VR+Y F A Sbjct 2302 YMLFTKFFYLLGLSAIMQAFFGYFAS--HFISNSWLMWFIISIVQMAPVSAMVRMYIFFA 2359 Query 1598 CLWFLRRFYNHVINGCKDTACLLCYKRNRLTRVEASTVVCGSKRTFYIVANGGTSFCCRH 1657 +++ + Y H+++GC + C++CYKRNR TRVE +T+V G KR+FY+ ANGG FC H Sbjct 2360 SFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAH 2419 Query 1658 NWNCVDCDTAGIGNTFICEEVANDLTTSLRRLVKPTDKSHYYVESVTVKDSVVQLHYSRE 1717 NWNC++CDT G+TFI +EVA DL+ +R + PTD+S Y V+SVTVK+ + L++ + Sbjct 2420 NWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKA 2479 Query 1718 GASCYERYPLCYFTNLDKLKFKEVCKTPTGIPEHNFLIYDSSDRGQENLARSACVYYSQV 1777 G YER+PL +F NLD L+ T +P N +++D + +E+ A+SA VYYSQ+ Sbjct 2480 GQKTYERHPLSHFVNLDNLRAN---NTKGSLPI-NVIVFDGKSKCEESAAKSASVYYSQL 2535 Query 1778 LSKPMLLVDSNMVTTVGDSREIASKMLDSYVNSFISLFGVNRDKLDKLVATARDCVKRGD 1837 + +P+LL+D +V+ VGDS E++ KM D+YV++F + F V +KL LVATA + +G Sbjct 2536 MCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGV 2595 Query 1838 DFQTVIKTFTDAARGPAGVESDVETSSIVDALQYAYKHDLQLTTEGFNNYVPSYIKPDSV 1897 V+ TF AAR V++DV+T +++ L+ ++ D+++T + NN++ +Y K +++ Sbjct 2596 ALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFMLTYNKVENM 2654 Query 1898 ATADLGCLIDLNAASVNQTSIRNANGACIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLT 1957 DLG ID NA +N ++ N + +WN DYM LS+ L++QIR A +K NIPFRLT Sbjct 2655 TPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLT 2714 Query 1958 TSRLRSADNILSVKFS 1973 + R N+++ K S Sbjct 2715 CATTRQVVNVITTKIS 2730 Range 2: 1004 to 1159 Score:150 bits(379), Expect:4e-36, Method:Compositional matrix adjust., Identities:70/156(45%), Positives:108/156(69%), Gaps:0/156(0%) Query 341 HIVLNNDVTLVFGDAIAVARATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDY 400 ++ L ++V + D + A++ + ++VNAANTHLKHGGG+A A+++A+ G +Q ESD+Y Sbjct 1004 YLKLTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEY 1063 Query 401 VNFYGPLNVGDSTLLKGHGLATGILHVVGPDARANQDIQLLKRCYKAFNKYPLVVSPLIS 460 + GPL VG S LL GH LA LHVVGP+ A +D+QLLKR Y+ FN ++++PL+S Sbjct 1064 IRQNGPLTVGGSCLLSGHNLAEKCLHVVGPNLNAGEDVQLLKRAYENFNSQDVLLAPLLS 1123 Query 461 AGIFCVEPRVSLEYLLSVVHTKTYVVVNSEKVYNDL 496 AGIF +P SL+ + +V T+ Y+ VN + +Y+ + Sbjct 1124 AGIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQI 1159 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; AltName: Full=Leader protein; AltName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=SARS coronavirus main proteinase; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Severe acute respiratory syndrome-related coronavirus] Sequence ID: P0C6U8.1 Length: 4382 Range 1: 1367 to 2736 Score:707 bits(1824), Expect:0.0, Method:Compositional matrix adjust., Identities:478/1456(33%), Positives:739/1456(50%), Gaps:96/1456(6%) Query 528 ICTDQSANAKLLKGRGVDLTKKTQTVD-GVKYYLYSSKDPLTDIITAANAC-KGICAMPI 585 IC D A ++ + + + VD GV+++ Y+SK+P+ IIT N+ + + MPI Sbjct 1367 ICMDVRAIMATIQRKYKGIKIQEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPI 1426 Query 586 GYVTHGLDLAQAGQQVKKITVPYVCLLASKDQVPILNSDV--AVQTPEQSFINTVIANGG 643 GYVTHG +L +A + ++ + P V ++S D V N + + +T E+ F+ TV G Sbjct 1427 GYVTHGFNLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLTSSSKTSEEHFVETVSLAGS 1486 Query 644 YHCWHLVTGELIVKGVSYRKLLNWSDQTICYADNKFYVVKGQIALPFDS--LEKCRTYLT 701 Y W +G+ GV + L D+ + ++ ++ + D L + Sbjct 1487 YRDWSY-SGQRTELGVEF---LKRGDKIV------YHTLESPVEFHLDGEVLSLDKLKSL 1536 Query 702 SRAAQQKNVDVLVTIDGVNFRTVVLNNTTTYRVQLGSVFYKGSDISDTIPTEKMSGEAVY 761 + K + V T+D N T +++ + TY Q G + G+D++ P G+ + Sbjct 1537 LSLREVKTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFF 1596 Query 762 L--ADNLSEAEKAVLSEVYGTADTAFLHRYYSLLALVKKWKYTVHDGVKSLKLNSNNCYV 819 + +D+ +E E Y T D +FL RY S L KKWK+ G+ S+K NNCY+ Sbjct 1597 VLPSDDTLRSEAF---EYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYL 1653 Query 820 NVTMLMLDMLKEIKFIVPALQAAYLKHKGGDSTEFIALIMAYGDCTYGEPDDASRLLHTI 879 + +L L L E+KF PALQ AY + + GD+ F ALI+AY + T GE D + + Sbjct 1654 SSVLLALQQL-EVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHL 1712 Query 880 LSKAELTTQAKMVWRQWCNVCGVQDTTTTGLKACIYVGMNSLDELHATHEECCQCGDVRK 939 L A L + AK V C CG + TT TG++A +Y+G S D L C CG Sbjct 1713 LQHANLES-AKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVCGRDAT 1771 Query 940 RQLVEHNAPWLLLSGLNEAKVMTPTSQSAGPDYTAFNVFQGVETSVGHYLHVRVKDNLLY 999 + LV+ + ++++S + + +YT GHY H+ K+ L Y Sbjct 1772 QYLVQQESSFVMMSAPPAEYKLQQGTFLCANEYTG-------NYQCGHYTHITAKETL-Y 1823 Query 1000 KYDSGSLSKTSDMKCKMTDVYYPKQRYSADCNVVVYSLDGNTWADVDPDLSAFYMKDGKY 1059 + D L+K S+ K +TDV+Y + Y+ V Y LDG T+ +++P L +Y KD Y Sbjct 1824 RIDGAHLTKMSEYKGPVTDVFYKETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAY 1883 Query 1060 FTKKPVIEYSPATILSGSVYTNSCLVGHDGTIGSDAISSSFNNLLGFDNSKPVSKKLTYS 1119 +T++P I+ P L + + N L T + + N + GF +KP S++L+ + Sbjct 1884 YTEQP-IDLVPTQPLPNASFDNFKL-----TCSNTKFADDLNQMTGF--TKPASRELSVT 1935 Query 1120 FFPDFEGDVILTEYSTYDPIYKNGAMLHGKPILWVNNSKFDSALNKFNRATLRQVYDIAP 1179 FFPD GDV+ +Y Y +K GA L KPI+W N K N LR ++ P Sbjct 1936 FFPDLNGDVVAIDYRHYSASFKKGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKP 1995 Query 1180 VTLENKYTVLQDNQIQQVEVEAPKEDAKPQSPVQVAEDIDNKLPIIKCKGLKKPFVKDGY 1239 V N + VL Q ++ A E +P S +V E+ + +I+C +K V Sbjct 1996 VDTSNSFEVLAVEDTQGMDNLAC-ESQQPTSE-EVVENPTIQKEVIECD-VKTTEVVGNV 2052 Query 1240 SFVNDPQGVNVIDTLGIDDLRALYVDRNLRLIVLKENNWSALFNIHTVEKGDLSVIAASG 1299 +GV V LG +DL A YV+ N + + K N S + T+ IAA Sbjct 2053 ILKPSDEGVKVTQELGHEDLMAAYVE-NTSITIKKPNELSLALGLKTIATHG---IAAIN 2108 Query 1300 SITRRVKILLGASSLFAQFASVTVNVTTAMGKALGRMTRNVITNTGIIGQGFALLKMLLI 1359 S+ KIL Q A T N R+ + V N + F LL L Sbjct 2109 SVPWS-KILAYVKPFLGQAAITTSNCAK-------RLAQRVFNN--YMPYVFTLLFQLC- 2157 Query 1360 LPFTFWKSKNQSTVKVEVGALRTAGIVTTNVVKQCASAAYD-VLVVKFKRIDWKSTLRLL 1418 TF KS N S ++ + V + V K C A + V KF ++ + LL Sbjct 2158 ---TFTKSTN-SRIRASLPTTIAKNSVKS-VAKLCLDAGINYVKSPKFSKLFTIAMWLLL 2212 Query 1419 FLICTTGLLLSSLYYLFLFHQVLTSDVMLDGAEGMLATYRELRSYLGIHSLCDGMVEAYR 1478 IC L+ + A + L S G S C+G+ E Y Sbjct 2213 LSICLGSLICVT------------------------AAFGVLLSNFGAPSYCNGVRELYL 2248 Query 1479 NVS-YDVNDFCSNRSALCNWCLIGQDSLTRYSAFQMIQTHVTSYVINIDWVWFVMEFALA 1537 N S DFC S C+ CL G DSL Y A + IQ ++SY +++ + E+ LA Sbjct 2249 NSSNVTTMDFCEG-SFPCSICLSGLDSLDSYPALETIQVTISSYKLDLTILGLAAEWVLA 2307 Query 1538 YVLYTSTFNVLLLVVSSQYFFSYTGAFVNWRSYNYLVSGYFFCVTHIPLLGLVRIYNFLA 1597 Y+L+T F +L L Q FF Y + ++ S ++L+ V P+ +VR+Y F A Sbjct 2308 YMLFTKFFYLLGLSAIMQVFFGYFAS--HFISNSWLMWFIISIVQMAPVSAMVRMYIFFA 2365 Query 1598 CLWFLRRFYNHVINGCKDTACLLCYKRNRLTRVEASTVVCGSKRTFYIVANGGTSFCCRH 1657 +++ + Y H+++GC + C++CYKRNR TRVE +T+V G KR+FY+ ANGG FC H Sbjct 2366 SFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTH 2425 Query 1658 NWNCVDCDTAGIGNTFICEEVANDLTTSLRRLVKPTDKSHYYVESVTVKDSVVQLHYSRE 1717 NWNC++CDT G+TFI +EVA DL+ +R + PTD+S Y V+SV VK+ + L++ + Sbjct 2426 NWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLYFDKA 2485 Query 1718 GASCYERYPLCYFTNLDKLKFKEVCKTPTGIPEHNFLIYDSSDRGQENLARSACVYYSQV 1777 G YER+PL +F NLD L+ T +P N +++D + E+ ++SA VYYSQ+ Sbjct 2486 GQKTYERHPLSHFVNLDNLRAN---NTKGSLP-INVIVFDGKSKCDESASKSASVYYSQL 2541 Query 1778 LSKPMLLVDSNMVTTVGDSREIASKMLDSYVNSFISLFGVNRDKLDKLVATARDCVKRGD 1837 + +P+LL+D +V+ VGDS E++ KM D+YV++F + F V +KL LVATA + +G Sbjct 2542 MCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGV 2601 Query 1838 DFQTVIKTFTDAARGPAGVESDVETSSIVDALQYAYKHDLQLTTEGFNNYVPSYIKPDSV 1897 V+ TF AAR V++DV+T +++ L+ ++ DL++T + NN++ +Y K +++ Sbjct 2602 ALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENM 2660 Query 1898 ATADLGCLIDLNAASVNQTSIRNANGACIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLT 1957 DLG ID NA +N ++ N + IWN DYM LS+ L++QIR A +K NIPFRLT Sbjct 2661 TPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLT 2720 Query 1958 TSRLRSADNILSVKFS 1973 + R N+++ K S Sbjct 2721 CATTRQVVNVITTKIS 2736 Range 2: 1009 to 1164 Score:149 bits(376), Expect:9e-36, Method:Compositional matrix adjust., Identities:70/156(45%), Positives:103/156(66%), Gaps:0/156(0%) Query 341 HIVLNNDVTLVFGDAIAVARATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDY 400 ++ L ++V + D + A++ ++VNAAN HLKHGGG+A A+++A+ G +Q ESDDY Sbjct 1009 YLKLTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDY 1068 Query 401 VNFYGPLNVGDSTLLKGHGLATGILHVVGPDARANQDIQLLKRCYKAFNKYPLVVSPLIS 460 + GPL VG S LL GH LA LHVVGP+ A +DIQLLK Y+ FN ++++PL+S Sbjct 1069 IKLNGPLTVGGSCLLSGHNLAKKCLHVVGPNLNAGEDIQLLKAAYENFNSQDILLAPLLS 1128 Query 461 AGIFCVEPRVSLEYLLSVVHTKTYVVVNSEKVYNDL 496 AGIF +P SL+ + V T+ Y+ VN + +Y + Sbjct 1129 AGIFGAKPLQSLQVCVQTVRTQVYIAVNDKALYEQV 1164 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bat SARS CoV Rp3/2004] Sequence ID: P0C6T7.1 Length: 4380 Range 1: 1365 to 2734 Score:706 bits(1823), Expect:0.0, Method:Compositional matrix adjust., Identities:473/1461(32%), Positives:742/1461(50%), Gaps:106/1461(7%) Query 528 ICTDQSANAKLLKGRGVDLTKKTQTVD-GVKYYLYSSKDPLTDIITAANAC-KGICAMPI 585 +C D A ++ + + + VD GV+++ Y+SK+P+ IIT N+ + + MPI Sbjct 1365 VCMDVRAIMATIQRKYKGIKIQEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPI 1424 Query 586 GYVTHGLDLAQAGQQVKKITVPYVCLLASKDQVPILNSDV--AVQTPEQSFINTVIANGG 643 GYVTHG +L +A + ++ + P + ++S D V N + + +T E F+ TV G Sbjct 1425 GYVTHGFNLEEAARCMRSLKAPAIVSVSSPDAVTTYNGYLTSSSKTSEDHFVETVSLAGS 1484 Query 644 YHCWHLVTGELIVKGVSYRKLLNWSDQTICYADNKFYVVKGQIALPFDS--LEKCRTYLT 701 Y W +G+ GV + K + I Y + ++ + D L + Sbjct 1485 YRDWSY-SGQRTELGVEFLK----RGEKIVY-----HTLESPVKFHLDGEVLPLDKLKSL 1534 Query 702 SRAAQQKNVDVLVTIDGVNFRTVVLNNTTTYRVQLGSVFYKGSDISDTIPTEKMSGEAVY 761 + K + V T+D N T +++ + TY QLG + +G+D++ P G+ + Sbjct 1535 LSLREVKTIKVFTTVDNTNLHTQLVDMSMTYGQQLGPTYLEGADVTKIKPHVNHEGKTFF 1594 Query 762 L--ADNLSEAEKAVLSEVYGTADTAFLHRYYSLLALVKKWKYTVHDGVKSLKLNSNNCYV 819 + +D+ +E E Y T D +FL RY S L KKWK+ G+ S+K NNCY+ Sbjct 1595 VLPSDDTLRSEAF---EYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYL 1651 Query 820 NVTMLMLDMLKEIKFIVPALQAAYLKHKGGDSTEFIALIMAYGDCTYGEPDDASRLLHTI 879 + +L L + E+KF PALQ AY + + GD+ F ALI+AY + T GE D + + Sbjct 1652 SSVLLALQQI-EVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHL 1710 Query 880 LSKAELTTQAKMVWRQWCNVCGVQDTTTTGLKACIYVGMNSLDELHATHEECCQCGDVRK 939 L A L + AK V C CG + TT TG++A +Y+G S D L C CG Sbjct 1711 LQHANLES-AKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKMGVSIPCVCGRDAT 1769 Query 940 RQLVEHNAPWLLLSGLNEAKVMTPTSQSAGPDYTAFNVFQGVETSVGHYLHVRVKDNLLY 999 + LV+ + ++++S + + +YT GHY H+ K+ L Y Sbjct 1770 QYLVQQESSFVMMSAPPAEYKLQQGTFLCANEYTG-------NYQCGHYTHITAKETL-Y 1821 Query 1000 KYDSGSLSKTSDMKCKMTDVYYPKQRYSADCNVVVYSLDGNTWADVDPDLSAFYMKDGKY 1059 + D L+K S+ K +TDV+Y + Y+ V Y LDG T+ +++P L +Y KD Y Sbjct 1822 RIDGAHLTKMSEYKGPVTDVFYKETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAY 1881 Query 1060 FTKKPVIEYSPATILSGSVYTNSCLVGHDGTIGSDAISSSFNNLLGFDNSKPVSKKLTYS 1119 +T++P I+ P L + + N L T + + N + GF +KP S++L+ + Sbjct 1882 YTEQP-IDLIPTQPLPNASFDNFKL-----TCSNTKFADDLNQMTGF--TKPASRELSVT 1933 Query 1120 FFPDFEGDVILTEYSTYDPIYKNGAMLHGKPILWVNNSKFDSALNKFNRATLRQVYDIAP 1179 FFPD GDV+ +Y Y +K GA L KPI+W N K N LR ++ P Sbjct 1934 FFPDLNGDVVAIDYRHYSASFKKGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKP 1993 Query 1180 VTLENKYTVLQDNQIQQVEVEAPKEDAKPQSPVQVAEDIDNKLPIIKCKGLKKPFVKDGY 1239 V N + VL Q ++ A E +P +P +V E+ + +I+C +K V Sbjct 1994 VDTSNSFEVLAVEDTQGMDNLAC-ESQQP-TPEEVVENPTIQKEVIECD-VKTTEVVGNV 2050 Query 1240 SFVNDPQGVNVIDTLGIDDLRALYVDRNLRLIVLKENNWSALFNIHTVEKGDLSVIAAS- 1298 +GV V L +DL A YV+ N + + K N S + T+ ++ I + Sbjct 2051 ILKPSDEGVKVTQELDHEDLMAAYVE-NTSITIKKPNELSLALGLKTIATHGIAAINSVP 2109 Query 1299 -GSITRRVKILLGASSLFAQFASVTVNVTTAMGKALGRMTRNVITNTGIIGQGFALLKML 1357 G I VK LG ++ V + + + RM N + + L Sbjct 2110 WGKILAYVKPFLGQAA---------VTTSNCAKRLVQRMFNNYM----------PYVLTL 2150 Query 1358 LILPFTFWKSKN---QSTVKVEVGALRTAGIVTTNVVKQCASAAYD-VLVVKFKRIDWKS 1413 L TF KS N ++++ + GIV + C A + V KF ++ + Sbjct 2151 LFQLCTFTKSTNSRIRASLPTTIAKNSVRGIV-----RLCLDAGINYVKSPKFSKLFTIA 2205 Query 1414 TLRLLFLICTTGLLLSSLYYLFLFHQVLTSDVMLDGAEGMLATYRELRSYLGIHSLCDGM 1473 LL IC L SL Y+ VL S+ G S C G+ Sbjct 2206 MWLLLLSIC-----LGSLIYVTAALGVLLSN-------------------FGAPSYCSGV 2241 Query 1474 VEAYRNVS-YDVNDFCSNRSALCNWCLIGQDSLTRYSAFQMIQTHVTSYVINIDWVWFVM 1532 E+Y N S DFC S C+ CL G DSL Y A + IQ ++SY +++ + Sbjct 2242 RESYLNSSNVTTMDFCEG-SFPCSVCLSGLDSLDSYPALETIQVTISSYKLDLTILGLAA 2300 Query 1533 EFALAYVLYTSTFNVLLLVVSSQYFFSYTGAFVNWRSYNYLVSGYFFCVTHIPLLGLVRI 1592 E+ AY+L+T F +L L Q FF Y + ++ S ++L+ V P+ +VR+ Sbjct 2301 EWFFAYMLFTKFFYLLGLSAIMQVFFGYFAS--HFISNSWLMWFIISIVQMAPVSAMVRM 2358 Query 1593 YNFLACLWFLRRFYNHVINGCKDTACLLCYKRNRLTRVEASTVVCGSKRTFYIVANGGTS 1652 Y F A +++ + Y H+++GC + C++CYKRNR TRVE +T+V G KR+FY+ ANGG Sbjct 2359 YIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRG 2418 Query 1653 FCCRHNWNCVDCDTAGIGNTFICEEVANDLTTSLRRLVKPTDKSHYYVESVTVKDSVVQL 1712 FC HNWNC++CDT G+TFI +EVA DL+ +R + PTD+S Y V+SV VK+ + L Sbjct 2419 FCKTHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYVVDSVAVKNGALHL 2478 Query 1713 HYSREGASCYERYPLCYFTNLDKLKFKEVCKTPTGIPEHNFLIYDSSDRGQENLARSACV 1772 ++ + G YER+PL +F NLD L+ T +P N +++D + E+ A+SA V Sbjct 2479 YFDKAGQKTYERHPLSHFVNLDNLRAN---NTKGSLP-INVIVFDGKSKCDESAAKSASV 2534 Query 1773 YYSQVLSKPMLLVDSNMVTTVGDSREIASKMLDSYVNSFISLFGVNRDKLDKLVATARDC 1832 YYSQ++ +P+LL+D +V+ VGDS E++ KM D+YV++F + F V +KL LVATA Sbjct 2535 YYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSE 2594 Query 1833 VKRGDDFQTVIKTFTDAARGPAGVESDVETSSIVDALQYAYKHDLQLTTEGFNNYVPSYI 1892 + +G V+ TF A+R V++DV+T +++ L+ ++ DL++T + NN++ +Y Sbjct 2595 LAKGVALDGVLSTFVSASRQGV-VDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYN 2653 Query 1893 KPDSVATADLGCLIDLNAASVNQTSIRNANGACIWNSSDYMKLSDSLKRQIRIACRKCNI 1952 K +++ DLG ID NA +N R+ N + IWN DYM LS+ L++QIR A +K NI Sbjct 2654 KVENMTPRDLGACIDCNARHINAQVARSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNI 2713 Query 1953 PFRLTTSRLRSADNILSVKFS 1973 PFRLT + R N+++ K S Sbjct 2714 PFRLTCATTRQVVNVITTKIS 2734 Range 2: 1007 to 1162 Score:146 bits(369), Expect:5e-35, Method:Compositional matrix adjust., Identities:70/156(45%), Positives:102/156(65%), Gaps:0/156(0%) Query 341 HIVLNNDVTLVFGDAIAVARATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDY 400 ++ L ++V + D + A+ ++VNAAN HLKHGGG+A A+++A+ G +Q ESD Y Sbjct 1007 YLKLTDNVAIKCVDIVEEAQNANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDHY 1066 Query 401 VNFYGPLNVGDSTLLKGHGLATGILHVVGPDARANQDIQLLKRCYKAFNKYPLVVSPLIS 460 + GPL VG S LL GH LA LHVVGP+ A +DIQLLK Y+ FN ++++PL+S Sbjct 1067 IKLNGPLTVGGSCLLSGHNLAKKCLHVVGPNLNAGEDIQLLKAAYENFNSQDILLAPLLS 1126 Query 461 AGIFCVEPRVSLEYLLSVVHTKTYVVVNSEKVYNDL 496 AGIF +P SL+ + V T+ Y+VVN + +Y + Sbjct 1127 AGIFGAKPLQSLQMCVQTVRTQVYIVVNDKVLYEQV 1162 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; AltName: Full=Leader protein; AltName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=SARS coronavirus main proteinase; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=Non-structural protein 12; Short=nsp12; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=Non-structural protein 13; Short=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; AltName: Full=Non-structural protein 14; Short=nsp14; AltName: Full=Proofreading exoribonuclease nsp14; Short=ExoN; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=Non-structural protein 15; Short=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=Non-structural protein 16; Short=nsp16 [Severe acute respiratory syndrome-related coronavirus] Sequence ID: P0C6X7.1 Length: 7073 Range 1: 1367 to 2736 Score:705 bits(1820), Expect:0.0, Method:Compositional matrix adjust., Identities:478/1456(33%), Positives:739/1456(50%), Gaps:96/1456(6%) Query 528 ICTDQSANAKLLKGRGVDLTKKTQTVD-GVKYYLYSSKDPLTDIITAANAC-KGICAMPI 585 IC D A ++ + + + VD GV+++ Y+SK+P+ IIT N+ + + MPI Sbjct 1367 ICMDVRAIMATIQRKYKGIKIQEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPI 1426 Query 586 GYVTHGLDLAQAGQQVKKITVPYVCLLASKDQVPILNSDV--AVQTPEQSFINTVIANGG 643 GYVTHG +L +A + ++ + P V ++S D V N + + +T E+ F+ TV G Sbjct 1427 GYVTHGFNLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLTSSSKTSEEHFVETVSLAGS 1486 Query 644 YHCWHLVTGELIVKGVSYRKLLNWSDQTICYADNKFYVVKGQIALPFDS--LEKCRTYLT 701 Y W +G+ GV + L D+ + ++ ++ + D L + Sbjct 1487 YRDWSY-SGQRTELGVEF---LKRGDKIV------YHTLESPVEFHLDGEVLSLDKLKSL 1536 Query 702 SRAAQQKNVDVLVTIDGVNFRTVVLNNTTTYRVQLGSVFYKGSDISDTIPTEKMSGEAVY 761 + K + V T+D N T +++ + TY Q G + G+D++ P G+ + Sbjct 1537 LSLREVKTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFF 1596 Query 762 L--ADNLSEAEKAVLSEVYGTADTAFLHRYYSLLALVKKWKYTVHDGVKSLKLNSNNCYV 819 + +D+ +E E Y T D +FL RY S L KKWK+ G+ S+K NNCY+ Sbjct 1597 VLPSDDTLRSEAF---EYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYL 1653 Query 820 NVTMLMLDMLKEIKFIVPALQAAYLKHKGGDSTEFIALIMAYGDCTYGEPDDASRLLHTI 879 + +L L L E+KF PALQ AY + + GD+ F ALI+AY + T GE D + + Sbjct 1654 SSVLLALQQL-EVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHL 1712 Query 880 LSKAELTTQAKMVWRQWCNVCGVQDTTTTGLKACIYVGMNSLDELHATHEECCQCGDVRK 939 L A L + AK V C CG + TT TG++A +Y+G S D L C CG Sbjct 1713 LQHANLES-AKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVCGRDAT 1771 Query 940 RQLVEHNAPWLLLSGLNEAKVMTPTSQSAGPDYTAFNVFQGVETSVGHYLHVRVKDNLLY 999 + LV+ + ++++S + + +YT GHY H+ K+ L Y Sbjct 1772 QYLVQQESSFVMMSAPPAEYKLQQGTFLCANEYTG-------NYQCGHYTHITAKETL-Y 1823 Query 1000 KYDSGSLSKTSDMKCKMTDVYYPKQRYSADCNVVVYSLDGNTWADVDPDLSAFYMKDGKY 1059 + D L+K S+ K +TDV+Y + Y+ V Y LDG T+ +++P L +Y KD Y Sbjct 1824 RIDGAHLTKMSEYKGPVTDVFYKETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAY 1883 Query 1060 FTKKPVIEYSPATILSGSVYTNSCLVGHDGTIGSDAISSSFNNLLGFDNSKPVSKKLTYS 1119 +T++P I+ P L + + N L T + + N + GF +KP S++L+ + Sbjct 1884 YTEQP-IDLVPTQPLPNASFDNFKL-----TCSNTKFADDLNQMTGF--TKPASRELSVT 1935 Query 1120 FFPDFEGDVILTEYSTYDPIYKNGAMLHGKPILWVNNSKFDSALNKFNRATLRQVYDIAP 1179 FFPD GDV+ +Y Y +K GA L KPI+W N K N LR ++ P Sbjct 1936 FFPDLNGDVVAIDYRHYSASFKKGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKP 1995 Query 1180 VTLENKYTVLQDNQIQQVEVEAPKEDAKPQSPVQVAEDIDNKLPIIKCKGLKKPFVKDGY 1239 V N + VL Q ++ A E +P S +V E+ + +I+C +K V Sbjct 1996 VDTSNSFEVLAVEDTQGMDNLAC-ESQQPTSE-EVVENPTIQKEVIECD-VKTTEVVGNV 2052 Query 1240 SFVNDPQGVNVIDTLGIDDLRALYVDRNLRLIVLKENNWSALFNIHTVEKGDLSVIAASG 1299 +GV V LG +DL A YV+ N + + K N S + T+ IAA Sbjct 2053 ILKPSDEGVKVTQELGHEDLMAAYVE-NTSITIKKPNELSLALGLKTIATHG---IAAIN 2108 Query 1300 SITRRVKILLGASSLFAQFASVTVNVTTAMGKALGRMTRNVITNTGIIGQGFALLKMLLI 1359 S+ KIL Q A T N R+ + V N + F LL L Sbjct 2109 SVPWS-KILAYVKPFLGQAAITTSNCAK-------RLAQRVFNN--YMPYVFTLLFQLC- 2157 Query 1360 LPFTFWKSKNQSTVKVEVGALRTAGIVTTNVVKQCASAAYD-VLVVKFKRIDWKSTLRLL 1418 TF KS N S ++ + V + V K C A + V KF ++ + LL Sbjct 2158 ---TFTKSTN-SRIRASLPTTIAKNSVKS-VAKLCLDAGINYVKSPKFSKLFTIAMWLLL 2212 Query 1419 FLICTTGLLLSSLYYLFLFHQVLTSDVMLDGAEGMLATYRELRSYLGIHSLCDGMVEAYR 1478 IC L+ + A + L S G S C+G+ E Y Sbjct 2213 LSICLGSLICVT------------------------AAFGVLLSNFGAPSYCNGVRELYL 2248 Query 1479 NVS-YDVNDFCSNRSALCNWCLIGQDSLTRYSAFQMIQTHVTSYVINIDWVWFVMEFALA 1537 N S DFC S C+ CL G DSL Y A + IQ ++SY +++ + E+ LA Sbjct 2249 NSSNVTTMDFCEG-SFPCSICLSGLDSLDSYPALETIQVTISSYKLDLTILGLAAEWVLA 2307 Query 1538 YVLYTSTFNVLLLVVSSQYFFSYTGAFVNWRSYNYLVSGYFFCVTHIPLLGLVRIYNFLA 1597 Y+L+T F +L L Q FF Y + ++ S ++L+ V P+ +VR+Y F A Sbjct 2308 YMLFTKFFYLLGLSAIMQVFFGYFAS--HFISNSWLMWFIISIVQMAPVSAMVRMYIFFA 2365 Query 1598 CLWFLRRFYNHVINGCKDTACLLCYKRNRLTRVEASTVVCGSKRTFYIVANGGTSFCCRH 1657 +++ + Y H+++GC + C++CYKRNR TRVE +T+V G KR+FY+ ANGG FC H Sbjct 2366 SFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTH 2425 Query 1658 NWNCVDCDTAGIGNTFICEEVANDLTTSLRRLVKPTDKSHYYVESVTVKDSVVQLHYSRE 1717 NWNC++CDT G+TFI +EVA DL+ +R + PTD+S Y V+SV VK+ + L++ + Sbjct 2426 NWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLYFDKA 2485 Query 1718 GASCYERYPLCYFTNLDKLKFKEVCKTPTGIPEHNFLIYDSSDRGQENLARSACVYYSQV 1777 G YER+PL +F NLD L+ T +P N +++D + E+ ++SA VYYSQ+ Sbjct 2486 GQKTYERHPLSHFVNLDNLRAN---NTKGSLPI-NVIVFDGKSKCDESASKSASVYYSQL 2541 Query 1778 LSKPMLLVDSNMVTTVGDSREIASKMLDSYVNSFISLFGVNRDKLDKLVATARDCVKRGD 1837 + +P+LL+D +V+ VGDS E++ KM D+YV++F + F V +KL LVATA + +G Sbjct 2542 MCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGV 2601 Query 1838 DFQTVIKTFTDAARGPAGVESDVETSSIVDALQYAYKHDLQLTTEGFNNYVPSYIKPDSV 1897 V+ TF AAR V++DV+T +++ L+ ++ DL++T + NN++ +Y K +++ Sbjct 2602 ALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENM 2660 Query 1898 ATADLGCLIDLNAASVNQTSIRNANGACIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLT 1957 DLG ID NA +N ++ N + IWN DYM LS+ L++QIR A +K NIPFRLT Sbjct 2661 TPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLT 2720 Query 1958 TSRLRSADNILSVKFS 1973 + R N+++ K S Sbjct 2721 CATTRQVVNVITTKIS 2736 Range 2: 1009 to 1164 Score:149 bits(375), Expect:1e-35, Method:Compositional matrix adjust., Identities:70/156(45%), Positives:103/156(66%), Gaps:0/156(0%) Query 341 HIVLNNDVTLVFGDAIAVARATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDY 400 ++ L ++V + D + A++ ++VNAAN HLKHGGG+A A+++A+ G +Q ESDDY Sbjct 1009 YLKLTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDY 1068 Query 401 VNFYGPLNVGDSTLLKGHGLATGILHVVGPDARANQDIQLLKRCYKAFNKYPLVVSPLIS 460 + GPL VG S LL GH LA LHVVGP+ A +DIQLLK Y+ FN ++++PL+S Sbjct 1069 IKLNGPLTVGGSCLLSGHNLAKKCLHVVGPNLNAGEDIQLLKAAYENFNSQDILLAPLLS 1128 Query 461 AGIFCVEPRVSLEYLLSVVHTKTYVVVNSEKVYNDL 496 AGIF +P SL+ + V T+ Y+ VN + +Y + Sbjct 1129 AGIFGAKPLQSLQVCVQTVRTQVYIAVNDKALYEQV 1164 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Bat SARS CoV Rp3/2004] Sequence ID: P0C6W6.1 Length: 7071 Range 1: 1365 to 2734 Score:703 bits(1815), Expect:0.0, Method:Compositional matrix adjust., Identities:473/1458(32%), Positives:741/1458(50%), Gaps:100/1458(6%) Query 528 ICTDQSANAKLLKGRGVDLTKKTQTVD-GVKYYLYSSKDPLTDIITAANAC-KGICAMPI 585 +C D A ++ + + + VD GV+++ Y+SK+P+ IIT N+ + + MPI Sbjct 1365 VCMDVRAIMATIQRKYKGIKIQEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPI 1424 Query 586 GYVTHGLDLAQAGQQVKKITVPYVCLLASKDQVPILNSDV--AVQTPEQSFINTVIANGG 643 GYVTHG +L +A + ++ + P + ++S D V N + + +T E F+ TV G Sbjct 1425 GYVTHGFNLEEAARCMRSLKAPAIVSVSSPDAVTTYNGYLTSSSKTSEDHFVETVSLAGS 1484 Query 644 YHCWHLVTGELIVKGVSYRKLLNWSDQTICYADNKFYVVKGQIALPFDS--LEKCRTYLT 701 Y W +G+ GV + K + I Y + ++ + D L + Sbjct 1485 YRDWSY-SGQRTELGVEFLK----RGEKIVY-----HTLESPVKFHLDGEVLPLDKLKSL 1534 Query 702 SRAAQQKNVDVLVTIDGVNFRTVVLNNTTTYRVQLGSVFYKGSDISDTIPTEKMSGEAVY 761 + K + V T+D N T +++ + TY QLG + +G+D++ P G+ + Sbjct 1535 LSLREVKTIKVFTTVDNTNLHTQLVDMSMTYGQQLGPTYLEGADVTKIKPHVNHEGKTFF 1594 Query 762 L--ADNLSEAEKAVLSEVYGTADTAFLHRYYSLLALVKKWKYTVHDGVKSLKLNSNNCYV 819 + +D+ +E E Y T D +FL RY S L KKWK+ G+ S+K NNCY+ Sbjct 1595 VLPSDDTLRSEAF---EYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYL 1651 Query 820 NVTMLMLDMLKEIKFIVPALQAAYLKHKGGDSTEFIALIMAYGDCTYGEPDDASRLLHTI 879 + +L L + E+KF PALQ AY + + GD+ F ALI+AY + T GE D + + Sbjct 1652 SSVLLALQQI-EVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHL 1710 Query 880 LSKAELTTQAKMVWRQWCNVCGVQDTTTTGLKACIYVGMNSLDELHATHEECCQCGDVRK 939 L A L + AK V C CG + TT TG++A +Y+G S D L C CG Sbjct 1711 LQHANLES-AKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKMGVSIPCVCGRDAT 1769 Query 940 RQLVEHNAPWLLLSGLNEAKVMTPTSQSAGPDYTAFNVFQGVETSVGHYLHVRVKDNLLY 999 + LV+ + ++++S + + +YT GHY H+ K+ L Y Sbjct 1770 QYLVQQESSFVMMSAPPAEYKLQQGTFLCANEYTG-------NYQCGHYTHITAKETL-Y 1821 Query 1000 KYDSGSLSKTSDMKCKMTDVYYPKQRYSADCNVVVYSLDGNTWADVDPDLSAFYMKDGKY 1059 + D L+K S+ K +TDV+Y + Y+ V Y LDG T+ +++P L +Y KD Y Sbjct 1822 RIDGAHLTKMSEYKGPVTDVFYKETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAY 1881 Query 1060 FTKKPVIEYSPATILSGSVYTNSCLVGHDGTIGSDAISSSFNNLLGFDNSKPVSKKLTYS 1119 +T++P I+ P L + + N L T + + N + GF +KP S++L+ + Sbjct 1882 YTEQP-IDLIPTQPLPNASFDNFKL-----TCSNTKFADDLNQMTGF--TKPASRELSVT 1933 Query 1120 FFPDFEGDVILTEYSTYDPIYKNGAMLHGKPILWVNNSKFDSALNKFNRATLRQVYDIAP 1179 FFPD GDV+ +Y Y +K GA L KPI+W N K N LR ++ P Sbjct 1934 FFPDLNGDVVAIDYRHYSASFKKGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKP 1993 Query 1180 VTLENKYTVLQDNQIQQVEVEAPKEDAKPQSPVQVAEDIDNKLPIIKCKGLKKPFVKDGY 1239 V N + VL Q ++ A E +P +P +V E+ + +I+C +K V Sbjct 1994 VDTSNSFEVLAVEDTQGMDNLAC-ESQQP-TPEEVVENPTIQKEVIECD-VKTTEVVGNV 2050 Query 1240 SFVNDPQGVNVIDTLGIDDLRALYVDRNLRLIVLKENNWSALFNIHTVEKGDLSVIAAS- 1298 +GV V L +DL A YV+ N + + K N S + T+ ++ I + Sbjct 2051 ILKPSDEGVKVTQELDHEDLMAAYVE-NTSITIKKPNELSLALGLKTIATHGIAAINSVP 2109 Query 1299 -GSITRRVKILLGASSLFAQFASVTVNVTTAMGKALGRMTRNVITNTGIIGQGFALLKML 1357 G I VK LG ++ V + + + RM N + + L Sbjct 2110 WGKILAYVKPFLGQAA---------VTTSNCAKRLVQRMFNNYM----------PYVLTL 2150 Query 1358 LILPFTFWKSKNQSTVKVEVGALRTAGIVTTNVVKQCASAAYD-VLVVKFKRIDWKSTLR 1416 L TF KS N S ++ + V +V+ C A + V KF ++ + Sbjct 2151 LFQLCTFTKSTN-SRIRASLPTTIAKNSVR-GIVRLCLDAGINYVKSPKFSKLFTIAMWL 2208 Query 1417 LLFLICTTGLLLSSLYYLFLFHQVLTSDVMLDGAEGMLATYRELRSYLGIHSLCDGMVEA 1476 LL IC L SL Y+ VL S+ G S C G+ E+ Sbjct 2209 LLLSIC-----LGSLIYVTAALGVLLSN-------------------FGAPSYCSGVRES 2244 Query 1477 YRNVS-YDVNDFCSNRSALCNWCLIGQDSLTRYSAFQMIQTHVTSYVINIDWVWFVMEFA 1535 Y N S DFC S C+ CL G DSL Y A + IQ ++SY +++ + E+ Sbjct 2245 YLNSSNVTTMDFCEG-SFPCSVCLSGLDSLDSYPALETIQVTISSYKLDLTILGLAAEWF 2303 Query 1536 LAYVLYTSTFNVLLLVVSSQYFFSYTGAFVNWRSYNYLVSGYFFCVTHIPLLGLVRIYNF 1595 AY+L+T F +L L Q FF Y + ++ S ++L+ V P+ +VR+Y F Sbjct 2304 FAYMLFTKFFYLLGLSAIMQVFFGYFAS--HFISNSWLMWFIISIVQMAPVSAMVRMYIF 2361 Query 1596 LACLWFLRRFYNHVINGCKDTACLLCYKRNRLTRVEASTVVCGSKRTFYIVANGGTSFCC 1655 A +++ + Y H+++GC + C++CYKRNR TRVE +T+V G KR+FY+ ANGG FC Sbjct 2362 FASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCK 2421 Query 1656 RHNWNCVDCDTAGIGNTFICEEVANDLTTSLRRLVKPTDKSHYYVESVTVKDSVVQLHYS 1715 HNWNC++CDT G+TFI +EVA DL+ +R + PTD+S Y V+SV VK+ + L++ Sbjct 2422 THNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYVVDSVAVKNGALHLYFD 2481 Query 1716 REGASCYERYPLCYFTNLDKLKFKEVCKTPTGIPEHNFLIYDSSDRGQENLARSACVYYS 1775 + G YER+PL +F NLD L+ T +P N +++D + E+ A+SA VYYS Sbjct 2482 KAGQKTYERHPLSHFVNLDNLRAN---NTKGSLPI-NVIVFDGKSKCDESAAKSASVYYS 2537 Query 1776 QVLSKPMLLVDSNMVTTVGDSREIASKMLDSYVNSFISLFGVNRDKLDKLVATARDCVKR 1835 Q++ +P+LL+D +V+ VGDS E++ KM D+YV++F + F V +KL LVATA + + Sbjct 2538 QLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAK 2597 Query 1836 GDDFQTVIKTFTDAARGPAGVESDVETSSIVDALQYAYKHDLQLTTEGFNNYVPSYIKPD 1895 G V+ TF A+R V++DV+T +++ L+ ++ DL++T + NN++ +Y K + Sbjct 2598 GVALDGVLSTFVSASRQGV-VDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVE 2656 Query 1896 SVATADLGCLIDLNAASVNQTSIRNANGACIWNSSDYMKLSDSLKRQIRIACRKCNIPFR 1955 ++ DLG ID NA +N R+ N + IWN DYM LS+ L++QIR A +K NIPFR Sbjct 2657 NMTPRDLGACIDCNARHINAQVARSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFR 2716 Query 1956 LTTSRLRSADNILSVKFS 1973 LT + R N+++ K S Sbjct 2717 LTCATTRQVVNVITTKIS 2734 Range 2: 1007 to 1162 Score:146 bits(368), Expect:8e-35, Method:Compositional matrix adjust., Identities:70/156(45%), Positives:102/156(65%), Gaps:0/156(0%) Query 341 HIVLNNDVTLVFGDAIAVARATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDY 400 ++ L ++V + D + A+ ++VNAAN HLKHGGG+A A+++A+ G +Q ESD Y Sbjct 1007 YLKLTDNVAIKCVDIVEEAQNANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDHY 1066 Query 401 VNFYGPLNVGDSTLLKGHGLATGILHVVGPDARANQDIQLLKRCYKAFNKYPLVVSPLIS 460 + GPL VG S LL GH LA LHVVGP+ A +DIQLLK Y+ FN ++++PL+S Sbjct 1067 IKLNGPLTVGGSCLLSGHNLAKKCLHVVGPNLNAGEDIQLLKAAYENFNSQDILLAPLLS 1126 Query 461 AGIFCVEPRVSLEYLLSVVHTKTYVVVNSEKVYNDL 496 AGIF +P SL+ + V T+ Y+VVN + +Y + Sbjct 1127 AGIFGAKPLQSLQMCVQTVRTQVYIVVNDKVLYEQV 1162 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Rousettus bat coronavirus HKU9] Sequence ID: P0C6T6.1 Length: 4248 Range 1: 1264 to 2596 Score:602 bits(1553), Expect:1e-177, Method:Compositional matrix adjust., Identities:424/1434(30%), Positives:706/1434(49%), Gaps:125/1434(8%) Query 554 DGVKYYLYSSKDPLTDIITAANAC-KGICAMPIGYVTHGLDLAQAGQQVKKITVPYVCLL 612 +G ++Y YS PL ++ N+ + + +P G++ +G LA + ++ +TVP+ ++ Sbjct 1264 NGYEFYGYSRDKPLHEVSKDLNSLGRPLIMIPFGFIVNGQTLAVSAVSMRGLTVPHTVVV 1323 Query 613 ASKDQVPILNSDV-----AVQTPEQSFINTVIANGGYHCWHLVTGELIVKGVSYRKLLNW 667 S+ VP+ + T Q F+ ++ NG W ++ V Y+ + Sbjct 1324 PSESSVPLYRAYFNGVFSGDTTAVQDFVVDILLNGARD-WDVLQTTCTVDRKVYKTICKR 1382 Query 668 SDQTICYADNKFYVVKGQIALPFDSLEKCRTYLTSR-AAQQKNVDVLVTIDGVNFRTVVL 726 + +C+ D Y + G + L F ++ K R YL ++ A + + VL T+DG+N+ TV++ Sbjct 1383 GNTYLCFDDTNLYAITGDVVLKFATVSKARAYLETKLCAPEPLIKVLTTVDGINYSTVLV 1442 Query 727 NNTTTYRVQLGSVFYKGSDISDTIPTEKMSGEAVYLADNLSEAEKAVLSEVYGTADTAFL 786 + +YR Q+G+VF G D S+ P G +Y DN S AE + E YG D+ + Sbjct 1443 STAQSYRAQIGTVFCDGHDWSNKNPMPTDEGTHLYKQDNFSSAEVTAIREYYGVDDSNII 1502 Query 787 HRYYSLLALVKKWKYTVHDGVKSLKLNSNNCYVNVTMLMLDMLKEIKFIVPALQAAYLKH 846 R S+ V+ W YTV DG L +NCY+NV + +L + ++ F P + AY Sbjct 1503 ARAMSIRKTVQTWPYTVVDGRVLLAQRDSNCYLNVAISLLQDI-DVSFSTPWVCRAYDAL 1561 Query 847 KGGDSTEFIALIMAYGDCTYGEPDDASRLLHTILSKAELTTQAKMVWRQWCNVCGVQDTT 906 KGG+ +++A G T G DDA +L +L+ +T A+ V + C CGV Sbjct 1562 KGGNPLPMAEVLIALGKATPGVSDDAHMVLSAVLNHGTVT--ARRVMQTVCEHCGVSQMV 1619 Query 907 TTGLKACIYVGMNSLDELHATHEECCQCGDVRKRQLVEHNAPWLLLSGLNEAKVMTPTS- 965 TG AC + G LD+L+A CQCG R + E +PWLL+S TPT Sbjct 1620 FTGTDACTFYGSVVLDDLYAPVSVVCQCGRPAIRYVSEQKSPWLLMS-------CTPTQV 1672 Query 966 --QSAGPDYTAFNVFQGVETSVGHYLHVRVKDNLLYKYDSGSLSKTSDMKCKMTDVYYPK 1023 ++G TA VF+G T+ GHY++ V L+ YD+ + +TSD+K TD+ Y Sbjct 1673 PLDTSGIWKTAI-VFRGPVTA-GHYMYA-VNGTLISVYDANTRRRTSDLKLPATDILYGP 1729 Query 1024 QRYSADCNVVVYSLDGNTWADVDPDLSAFYMKDGKYFTKKPV-IEYSPATILS-GSVYTN 1081 +++D V Y LDG +DPD S + + YFT P+ + +P + S Y + Sbjct 1730 TSFTSDSKVETYYLDGVKRTTIDPDFSKYVKRGDYYFTTAPIEVVAAPKLVTSYDGFYLS 1789 Query 1082 SCLVGHDGTIGSDAISSSFNNLLGFDNSKPVSKKLTYSFFPDFEGDVI-LTEYSTYDPIY 1140 SC + ++ SFN + + P+ K LT +P+ GDV+ +++ + Y Sbjct 1790 SC--------QNPQLAESFNKAINATKTGPM-KLLT--MYPNVAGDVVAISDDNVVAHPY 1838 Query 1141 KNGAMLHGKPILWVNNSKFDSALNKFNRATLRQVYDIAPVTLENKYTVLQDNQIQQVEVE 1200 G++ GKP+L+V N + + L + V N Y VL + + Sbjct 1839 --GSLHMGKPVLFVTRP------NTWKK--LVPLLSTVVVNTPNTYDVLAVDPL------ 1882 Query 1201 APKEDAKPQSPVQVAEDIDNKLPIIKCKGLKKPFVKDGYSFVNDPQG-VNVIDTLGIDDL 1259 P + + P+ V K PI GLK V +G ++V +G + + + DL Sbjct 1883 -PVNNETSEEPISV------KAPI-PLYGLKATMVLNGTTYVPGNKGHLLCLKEFTLTDL 1934 Query 1260 RALYVDRNLRLIVLKENNWSALF---------NIHTVEKGDLSVIAASGSITRRVKILLG 1310 + YV+ ++LK ++ S + +++ + KG + AA+ TR LLG Sbjct 1935 QTFYVEGVQPFVLLKASHLSKVLGLRVSDSSLHVNHLSKGVVYAYAATRLTTRVTTSLLG 1994 Query 1311 ASSLFAQFASVTVNVTTAMGKALGRMTRNVITNTGIIGQGFALLKMLLILPFTFWKSKNQ 1370 VT +V R T + + +T + LL + L FW + Sbjct 1995 GL--------VTRSV---------RKTADFVRSTNPGSKCVGLLCLFYQLFMRFWLLVKK 2037 Query 1371 STVKVEVGALRTAGIVTTNVVKQCASAAYDVLVVKFKRIDWKSTLRLLFLICTTGLLLSS 1430 + ++ +GI+ N + + L + I W L+LL + Sbjct 2038 PPI------VKVSGIIAYNTGCGVTTCVLNYLRSRCGNISWSRLLKLLRYM--------- 2082 Query 1431 LYYLFLFHQVLTSDVMLDGAEGMLATYRELRSYLGIHSLCDGMVEAYRNVSYDVNDFCSN 1490 LY F++ + V L R + +LGI CD ++ VN+ + Sbjct 2083 LYIWFVWTCLTICGVWLSEPYAPSLVTR-FKYFLGIVMPCDYVL---------VNE--TG 2130 Query 1491 RSALCNWCLIGQDSLTRYSAFQMIQTHVTSYVINIDWVWFVMEFALAYVLYTSTFNVLLL 1550 L + C+ G DSL Y A +M Q H N ++ ++E AY+LYT ++ + Sbjct 2131 TGWLHHLCMAGMDSLD-YPALRM-QQHRYGSPYNYTYILMLLEAFFAYLLYTPALPIVGI 2188 Query 1551 VVSSQYFFSYTGAFVNWRSYNYLVSGYFFCVTHIPLLGLVRIYNFLACLWFLRRFYNHVI 1610 + Y + ++LV ++ + +P ++R+Y +A LW + + HV Sbjct 2189 LAVLHLIVLYLPIPLG---NSWLVVFLYYIIRLVPFTSMLRMYIVIAFLWLCYKGFLHVR 2245 Query 1611 NGCKDTACLLCYKRNRLTRVEASTVVCGSKRTFYIVANGGTSFCCRHNWNCVDCDTAGIG 1670 GC + ACL+CYK+N R+E STVV G KR FY+ ANGGT FC +HNWNCV CDT + Sbjct 2246 YGCNNVACLMCYKKNVAKRIECSTVVNGVKRMFYVNANGGTHFCTKHNWNCVSCDTYTVD 2305 Query 1671 NTFICEEVANDLTTSLRRLVKPTDKSHYYVESVTVKDSVVQLHYSREGASCYERYPLCYF 1730 +TFIC +VA DL+ +R + TD+++Y V SV V++ V ++ +G YER+P+ F Sbjct 2306 STFICRQVALDLSAQFKRPIIHTDEAYYEVTSVEVRNGYVYCYFESDGQRSYERFPMDAF 2365 Query 1731 TNLDKLKFKEVCKTPTGIPEHNFLIYDSSDRGQENLARSACVYYSQVLSKPMLLVDSNMV 1790 TN+ KL + E+ P N L++D+++R +EN ++A +YY+Q+ KP+LLVD MV Sbjct 2366 TNVSKLHYSEL---KGAAPAFNVLVFDATNRIEENAVKTAAIYYAQLACKPILLVDKRMV 2422 Query 1791 TTVGDSREIASKMLDSYVNSFISLFGVNRDKLDKLVATARDCVKRGDDFQTVIKTFTDAA 1850 VGD IA M ++Y +++ + + DK+ L +TA + G ++V+K F + Sbjct 2423 GVVGDDATIARAMFEAYAQNYLLKYSIAMDKVKHLYSTALQQISSGMTVESVLKVFVGST 2482 Query 1851 RGPAG-VESDVETSSIVDALQYAYKHDLQLTTEGFNNYVPSYIKPDSVATADLGCLIDLN 1909 R A +ESDV+T+ +V ++ ++ + TT+ +NN VP+YIK D+++T ++G + N Sbjct 2483 RAEAKDLESDVDTNDLVSCIRLCHQEGWEWTTDSWNNLVPTYIKQDTLSTLEVGQFMTAN 2542 Query 1910 AASVNQTSIRNANGACIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLTTSRLRS 1963 A VN + A IW +D++KLS+S++RQ+++A RK + +TTS L++ Sbjct 2543 AKYVNANIAKGAAVNLIWRYADFIKLSESMRRQLKVAARKTGLNLLVTTSSLKA 2596 Range 2: 948 to 1089 Score:118 bits(295), Expect:2e-26, Method:Compositional matrix adjust., Identities:65/142(46%), Positives:85/142(59%), Gaps:1/142(0%) Query 353 GDAIAVARATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDYVNFYGPLNVGDS 412 D + AR +LVNAAN +L HGGG+A A++RA+ +Q ES +Y+ G L G Sbjct 948 ADIVQEARNYSYAVLVNAANVNLHHGGGVAGALNRATNNAMQKESSEYIKANGSLQPGGH 1007 Query 413 TLLKGHGLAT-GILHVVGPDARANQDIQLLKRCYKAFNKYPLVVSPLISAGIFCVEPRVS 471 LL HGLA+ GILHVVGPD R QD+ LL Y A+ + V++PL+SAGIF S Sbjct 1008 VLLSSHGLASHGILHVVGPDKRLGQDLALLDAVYAAYTGFDSVLTPLVSAGIFGFTVEES 1067 Query 472 LEYLLSVVHTKTYVVVNSEKVY 493 L L+ V TYVVV ++Y Sbjct 1068 LCSLVKNVACTTYVVVYDRQLY 1089 Range 3: 777 to 896 Score:54.3 bits(129), Expect:6e-07, Method:Compositional matrix adjust., Identities:41/122(34%), Positives:61/122(50%), Gaps:4/122(3%) Query 6 VKFGGEQTKEITAVRSVSVDYDVHPVLDALLAGSELATFTVEKDLPVKDFVDVVKDEVIE 65 V FG E+ I +V+ YDV LDA+L +A F VE+ ++D VV+ V E Sbjct 777 VTFGDEEVHTIPNTVTVNFSYDVCEGLDAIL-DKVMAPFQVEEGTKLEDLACVVQKAVYE 835 Query 66 LLSKLLR--GYNVDGFDLEDFADTPCYVYNAEGDLAWSSTMTFSVNPVEEVEEECDDDYV 123 LS L + +LEDF + C+VY+ + + M FS+ V++E DD + Sbjct 836 RLSDLFSDCPAELRPINLEDFLTSECFVYSKDYEKILMPEMYFSLEDAVPVDDEMVDD-I 894 Query 124 ED 125 ED Sbjct 895 ED 896 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Rousettus bat coronavirus HKU9] Sequence ID: P0C6W5.1 Length: 6930 Range 1: 1264 to 2596 Score:601 bits(1550), Expect:3e-177, Method:Compositional matrix adjust., Identities:424/1434(30%), Positives:706/1434(49%), Gaps:125/1434(8%) Query 554 DGVKYYLYSSKDPLTDIITAANAC-KGICAMPIGYVTHGLDLAQAGQQVKKITVPYVCLL 612 +G ++Y YS PL ++ N+ + + +P G++ +G LA + ++ +TVP+ ++ Sbjct 1264 NGYEFYGYSRDKPLHEVSKDLNSLGRPLIMIPFGFIVNGQTLAVSAVSMRGLTVPHTVVV 1323 Query 613 ASKDQVPILNSDV-----AVQTPEQSFINTVIANGGYHCWHLVTGELIVKGVSYRKLLNW 667 S+ VP+ + T Q F+ ++ NG W ++ V Y+ + Sbjct 1324 PSESSVPLYRAYFNGVFSGDTTAVQDFVVDILLNGARD-WDVLQTTCTVDRKVYKTICKR 1382 Query 668 SDQTICYADNKFYVVKGQIALPFDSLEKCRTYLTSR-AAQQKNVDVLVTIDGVNFRTVVL 726 + +C+ D Y + G + L F ++ K R YL ++ A + + VL T+DG+N+ TV++ Sbjct 1383 GNTYLCFDDTNLYAITGDVVLKFATVSKARAYLETKLCAPEPLIKVLTTVDGINYSTVLV 1442 Query 727 NNTTTYRVQLGSVFYKGSDISDTIPTEKMSGEAVYLADNLSEAEKAVLSEVYGTADTAFL 786 + +YR Q+G+VF G D S+ P G +Y DN S AE + E YG D+ + Sbjct 1443 STAQSYRAQIGTVFCDGHDWSNKNPMPTDEGTHLYKQDNFSSAEVTAIREYYGVDDSNII 1502 Query 787 HRYYSLLALVKKWKYTVHDGVKSLKLNSNNCYVNVTMLMLDMLKEIKFIVPALQAAYLKH 846 R S+ V+ W YTV DG L +NCY+NV + +L + ++ F P + AY Sbjct 1503 ARAMSIRKTVQTWPYTVVDGRVLLAQRDSNCYLNVAISLLQDI-DVSFSTPWVCRAYDAL 1561 Query 847 KGGDSTEFIALIMAYGDCTYGEPDDASRLLHTILSKAELTTQAKMVWRQWCNVCGVQDTT 906 KGG+ +++A G T G DDA +L +L+ +T A+ V + C CGV Sbjct 1562 KGGNPLPMAEVLIALGKATPGVSDDAHMVLSAVLNHGTVT--ARRVMQTVCEHCGVSQMV 1619 Query 907 TTGLKACIYVGMNSLDELHATHEECCQCGDVRKRQLVEHNAPWLLLSGLNEAKVMTPTS- 965 TG AC + G LD+L+A CQCG R + E +PWLL+S TPT Sbjct 1620 FTGTDACTFYGSVVLDDLYAPVSVVCQCGRPAIRYVSEQKSPWLLMS-------CTPTQV 1672 Query 966 --QSAGPDYTAFNVFQGVETSVGHYLHVRVKDNLLYKYDSGSLSKTSDMKCKMTDVYYPK 1023 ++G TA VF+G T+ GHY++ V L+ YD+ + +TSD+K TD+ Y Sbjct 1673 PLDTSGIWKTAI-VFRGPVTA-GHYMYA-VNGTLISVYDANTRRRTSDLKLPATDILYGP 1729 Query 1024 QRYSADCNVVVYSLDGNTWADVDPDLSAFYMKDGKYFTKKPV-IEYSPATILS-GSVYTN 1081 +++D V Y LDG +DPD S + + YFT P+ + +P + S Y + Sbjct 1730 TSFTSDSKVETYYLDGVKRTTIDPDFSKYVKRGDYYFTTAPIEVVAAPKLVTSYDGFYLS 1789 Query 1082 SCLVGHDGTIGSDAISSSFNNLLGFDNSKPVSKKLTYSFFPDFEGDVI-LTEYSTYDPIY 1140 SC + ++ SFN + + P+ K LT +P+ GDV+ +++ + Y Sbjct 1790 SC--------QNPQLAESFNKAINATKTGPM-KLLT--MYPNVAGDVVAISDDNVVAHPY 1838 Query 1141 KNGAMLHGKPILWVNNSKFDSALNKFNRATLRQVYDIAPVTLENKYTVLQDNQIQQVEVE 1200 G++ GKP+L+V N + + L + V N Y VL + + Sbjct 1839 --GSLHMGKPVLFVTRP------NTWKK--LVPLLSTVVVNTPNTYDVLAVDPL------ 1882 Query 1201 APKEDAKPQSPVQVAEDIDNKLPIIKCKGLKKPFVKDGYSFVNDPQG-VNVIDTLGIDDL 1259 P + + P+ V K PI GLK V +G ++V +G + + + DL Sbjct 1883 -PVNNETSEEPISV------KAPI-PLYGLKATMVLNGTTYVPGNKGHLLCLKEFTLTDL 1934 Query 1260 RALYVDRNLRLIVLKENNWSALF---------NIHTVEKGDLSVIAASGSITRRVKILLG 1310 + YV+ ++LK ++ S + +++ + KG + AA+ TR LLG Sbjct 1935 QTFYVEGVQPFVLLKASHLSKVLGLRVSDSSLHVNHLSKGVVYAYAATRLTTRVTTSLLG 1994 Query 1311 ASSLFAQFASVTVNVTTAMGKALGRMTRNVITNTGIIGQGFALLKMLLILPFTFWKSKNQ 1370 VT +V R T + + +T + LL + L FW + Sbjct 1995 GL--------VTRSV---------RKTADFVRSTNPGSKCVGLLCLFYQLFMRFWLLVKK 2037 Query 1371 STVKVEVGALRTAGIVTTNVVKQCASAAYDVLVVKFKRIDWKSTLRLLFLICTTGLLLSS 1430 + ++ +GI+ N + + L + I W L+LL + Sbjct 2038 PPI------VKVSGIIAYNTGCGVTTCVLNYLRSRCGNISWSRLLKLLRYM--------- 2082 Query 1431 LYYLFLFHQVLTSDVMLDGAEGMLATYRELRSYLGIHSLCDGMVEAYRNVSYDVNDFCSN 1490 LY F++ + V L R + +LGI CD ++ VN+ + Sbjct 2083 LYIWFVWTCLTICGVWLSEPYAPSLVTR-FKYFLGIVMPCDYVL---------VNE--TG 2130 Query 1491 RSALCNWCLIGQDSLTRYSAFQMIQTHVTSYVINIDWVWFVMEFALAYVLYTSTFNVLLL 1550 L + C+ G DSL Y A +M Q H N ++ ++E AY+LYT ++ + Sbjct 2131 TGWLHHLCMAGMDSLD-YPALRM-QQHRYGSPYNYTYILMLLEAFFAYLLYTPALPIVGI 2188 Query 1551 VVSSQYFFSYTGAFVNWRSYNYLVSGYFFCVTHIPLLGLVRIYNFLACLWFLRRFYNHVI 1610 + Y + ++LV ++ + +P ++R+Y +A LW + + HV Sbjct 2189 LAVLHLIVLYLPIPLG---NSWLVVFLYYIIRLVPFTSMLRMYIVIAFLWLCYKGFLHVR 2245 Query 1611 NGCKDTACLLCYKRNRLTRVEASTVVCGSKRTFYIVANGGTSFCCRHNWNCVDCDTAGIG 1670 GC + ACL+CYK+N R+E STVV G KR FY+ ANGGT FC +HNWNCV CDT + Sbjct 2246 YGCNNVACLMCYKKNVAKRIECSTVVNGVKRMFYVNANGGTHFCTKHNWNCVSCDTYTVD 2305 Query 1671 NTFICEEVANDLTTSLRRLVKPTDKSHYYVESVTVKDSVVQLHYSREGASCYERYPLCYF 1730 +TFIC +VA DL+ +R + TD+++Y V SV V++ V ++ +G YER+P+ F Sbjct 2306 STFICRQVALDLSAQFKRPIIHTDEAYYEVTSVEVRNGYVYCYFESDGQRSYERFPMDAF 2365 Query 1731 TNLDKLKFKEVCKTPTGIPEHNFLIYDSSDRGQENLARSACVYYSQVLSKPMLLVDSNMV 1790 TN+ KL + E+ P N L++D+++R +EN ++A +YY+Q+ KP+LLVD MV Sbjct 2366 TNVSKLHYSEL---KGAAPAFNVLVFDATNRIEENAVKTAAIYYAQLACKPILLVDKRMV 2422 Query 1791 TTVGDSREIASKMLDSYVNSFISLFGVNRDKLDKLVATARDCVKRGDDFQTVIKTFTDAA 1850 VGD IA M ++Y +++ + + DK+ L +TA + G ++V+K F + Sbjct 2423 GVVGDDATIARAMFEAYAQNYLLKYSIAMDKVKHLYSTALQQISSGMTVESVLKVFVGST 2482 Query 1851 RGPAG-VESDVETSSIVDALQYAYKHDLQLTTEGFNNYVPSYIKPDSVATADLGCLIDLN 1909 R A +ESDV+T+ +V ++ ++ + TT+ +NN VP+YIK D+++T ++G + N Sbjct 2483 RAEAKDLESDVDTNDLVSCIRLCHQEGWEWTTDSWNNLVPTYIKQDTLSTLEVGQFMTAN 2542 Query 1910 AASVNQTSIRNANGACIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLTTSRLRS 1963 A VN + A IW +D++KLS+S++RQ+++A RK + +TTS L++ Sbjct 2543 AKYVNANIAKGAAVNLIWRYADFIKLSESMRRQLKVAARKTGLNLLVTTSSLKA 2596 Range 2: 948 to 1089 Score:118 bits(296), Expect:2e-26, Method:Compositional matrix adjust., Identities:65/142(46%), Positives:85/142(59%), Gaps:1/142(0%) Query 353 GDAIAVARATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDYVNFYGPLNVGDS 412 D + AR +LVNAAN +L HGGG+A A++RA+ +Q ES +Y+ G L G Sbjct 948 ADIVQEARNYSYAVLVNAANVNLHHGGGVAGALNRATNNAMQKESSEYIKANGSLQPGGH 1007 Query 413 TLLKGHGLAT-GILHVVGPDARANQDIQLLKRCYKAFNKYPLVVSPLISAGIFCVEPRVS 471 LL HGLA+ GILHVVGPD R QD+ LL Y A+ + V++PL+SAGIF S Sbjct 1008 VLLSSHGLASHGILHVVGPDKRLGQDLALLDAVYAAYTGFDSVLTPLVSAGIFGFTVEES 1067 Query 472 LEYLLSVVHTKTYVVVNSEKVY 493 L L+ V TYVVV ++Y Sbjct 1068 LCSLVKNVACTTYVVVYDRQLY 1089 Range 3: 777 to 896 Score:54.7 bits(130), Expect:5e-07, Method:Compositional matrix adjust., Identities:41/122(34%), Positives:61/122(50%), Gaps:4/122(3%) Query 6 VKFGGEQTKEITAVRSVSVDYDVHPVLDALLAGSELATFTVEKDLPVKDFVDVVKDEVIE 65 V FG E+ I +V+ YDV LDA+L +A F VE+ ++D VV+ V E Sbjct 777 VTFGDEEVHTIPNTVTVNFSYDVCEGLDAIL-DKVMAPFQVEEGTKLEDLACVVQKAVYE 835 Query 66 LLSKLLRG--YNVDGFDLEDFADTPCYVYNAEGDLAWSSTMTFSVNPVEEVEEECDDDYV 123 LS L + +LEDF + C+VY+ + + M FS+ V++E DD + Sbjct 836 RLSDLFSDCPAELRPINLEDFLTSECFVYSKDYEKILMPEMYFSLEDAVPVDDEMVDD-I 894 Query 124 ED 125 ED Sbjct 895 ED 896 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Murine hepatitis virus strain A59] Sequence ID: P0C6V0.1 Length: 4468 Range 1: 1604 to 2833 Score:497 bits(1280), Expect:2e-143, Method:Compositional matrix adjust., Identities:389/1327(29%), Positives:611/1327(46%), Gaps:153/1327(11%) Query 703 RAAQQKNVDVLVTIDGVNFRTVVLNNTTTYRVQLGSVFYKGSDISDTIPTEKMSGEAVYL 762 RA VDVL T+DGVNFR+ + + LGSVF G +++ + G+ + Sbjct 1604 RALLANKVDVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSAIYKGKVFFQ 1663 Query 763 ADNLSEAEKAVLSEVYGTADTAFLHRYYSLLALVKKWKYTVHDGVKSLKLNSNNCYVNVT 822 +LSEA+ + + +G D L +YY++L + K W V + K ++NNCY+NV Sbjct 1664 YSDLSEADLVAVKDAFGF-DEPQLLKYYTMLGMCK-WPVVVCGNYFAFKQSNNNCYINVA 1721 Query 823 MLMLDMLKEIKFIVPALQAAYLKHKGGDSTEFIALIMAYGDCTYGEPDDASRLLHTILSK 882 LML L +KF Q A+ + + G F++L++A G + EP D+ + +L + Sbjct 1722 CLMLQHL-SLKFPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSIDFMRVVLRE 1780 Query 883 AELTTQAKMVWRQWCNV-----CGVQDTTTTGLKACIYVGMNSLDELHATHEECCQCGDV 937 A+L+ CN+ CGV+ G+ A ++ G +L + C CG Sbjct 1781 ADLSGAT-------CNLEFVCKCGVKQEQRKGVDAVMHFGTLDKGDLVRGYNIACTCGS- 1832 Query 938 RKRQLVEHNAPWLLLSGLNEAKVMTPTSQSAGPDYTAFNVFQGVETSVGHYLHVRVKDNL 997 + + N P+L+ S TP + D A N+F G SVGHY HV+ K Sbjct 1833 KLVHCTQFNVPFLICSN-------TPEGRKLPDDVVAANIFTG--GSVGHYTHVKCKPKY 1883 Query 998 LYKYDSGSLSKTSDMKCKMTDVYYPKQRYSADCNVVV-YSLDGNTWADVDPDLSAFYMKD 1056 YD+ +++K S+ K TD Y K +V+ + LD + PDLS +Y + Sbjct 1884 QL-YDACNVNKVSEAKGNFTDCLYLKNLKQTFSSVLTTFYLDDVKCVEYKPDLSQYYCES 1942 Query 1057 GKYFTKKPVIEYSPATILS-GSVYTNSCLVGHDGTIGSDAISSSFNNLLGFDNSKP-VSK 1114 GKY+TK P+I+ T VYTN LVGH +I+ N LGFD + P V Sbjct 1943 GKYYTK-PIIKAQFRTFEKVDGVYTNFKLVGH-------SIAEKLNAKLGFDCNSPFVEY 1994 Query 1115 KLTYSFFPDFEGDVILTEYSTYDPIYKNGAMLHGKPILWVNNSKFD-SALNKFNRATLRQ 1173 K+T +P GDV+L Y Y +G + GKP++W+ + + +L FNR + Sbjct 1995 KITE--WPTATGDVVLASDDLYVSRYSSGCITFGKPVVWLGHEEASLKSLTYFNRPS--- 2049 Query 1174 VYDIAPVTLENKYTVLQDNQIQQVE----------VEAPKEDAKPQSPV----------- 1212 V ENK+ VL + + + P DA + + Sbjct 2050 ------VVCENKFNVLPVDVSEPTDKGPVPAAVLVTGVPGADASAGAGIAKEQKACASAS 2103 Query 1213 ---QVAEDIDNKLPI-------IKCKGLKKPFVKDGYSFVNDPQG-VNVIDTLGIDDLRA 1261 QV ++ + + +K G+KKP +G VNDP V+ +L I D+ Sbjct 2104 VEDQVVTEVRQEPSVSAADVKEVKLNGVKKPVKVEGSVVVNDPTSETKVVKSLSIVDVYD 2163 Query 1262 LYVDRNLRLIVLKENNWSALFNIHTVEKGDLSVIAASGSITRRVKILLGASSLFAQFASV 1321 +++ + +V N S L N TV + V G I K+LL +F + Sbjct 2164 MFL-TGCKYVVWTANELSRLVNSPTVRE---YVKWGMGKIVTPAKLLLLRDEK-QEFVAP 2218 Query 1322 TVNVTTAMGKALGRMTRNVITNTGIIGQGFALLKMLLILPFTFWKSKNQSTVKVEVGALR 1381 V A+ + +K L+ F++ K + V + Sbjct 2219 KVVKAKAIA-------------------CYCAVKWFLLYCFSWIKFNTDNKV------IY 2253 Query 1382 TAGIVTTNVVKQCASAAYDVLVVKFKRIDWKSTLRLLFLICTTGLLLSSLYYLFLFHQVL 1441 T + + K C A + L + +W R FL+ T LL ++ FL+ V+ Sbjct 2254 TTEVASKLTFKLCCLAFKNAL----QTFNWSVVSRGFFLVATVFLL----WFNFLYANVI 2305 Query 1442 TSDVMLDGAEGMLATY-----RELRSYLGIHSLCDGMVEAYRNVSYDVND------FCSN 1490 SD L G L T+ ++ G+ ++CD Y V D FC N Sbjct 2306 LSDFYLPNI-GPLPTFVGQIVAWFKTTFGVSTICD---------FYQVTDLGYRSSFC-N 2354 Query 1491 RSALCNWCLIGQDSLTRYSAFQMIQTHVTSYVINIDWVWF---VMEFALAYVLYTSTFNV 1547 S +C C G D L Y A ++Q HV ++ D++ V+E + Y LYT F Sbjct 2355 GSMVCELCFSGFDMLDNYDAINVVQ-HVVDRRLSFDYISLFKLVVELVIGYSLYTVCFYP 2413 Query 1548 LLLVVSSQYFFSYTGAFVNWRSYNYLVSGYFFCVTHIPLLGLVRIYNFLACLWFLRRFYN 1607 L +++ Q ++ F + ++ + F +P L+R Y + ++ + Sbjct 2414 LFVLIGMQLLTTWLPEFFMLETMHWSARLFVFVANMLPAFTLLRFYIVVTAMYKVYCLCR 2473 Query 1608 HVINGCKDTACLLCYKRNRLTRVEASTVVCGSKRTFYIVANGGTSFCCRHNWNCVDCDTA 1667 HV+ GC CL CYKRNR RV+ STVV GS R + ++ANGGT FC +H WNC++C++ Sbjct 2474 HVMYGCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKHQWNCLNCNSW 2533 Query 1668 GIGNTFICEEVANDLTTSLRRLVKPTDKSHYYVESVTVKDSVVQLHYSREGASCYERYPL 1727 GNTFI E A DL+ L+R V PTD ++Y V V ++L Y R+G Y+ Sbjct 2534 KPGNTFITHEAAADLSKELKRPVNPTDSAYYSVTEVKQVGCSMRLFYERDGQRVYDDVNA 2593 Query 1728 CYFTNLDKLKFKEVCKTPTGIPE-HNFLIYDSSDRGQENLARSACVYYSQVLSKPMLLVD 1786 F +++ L +V G+PE H ++ + +D+ A V+Y+Q L +PML+V+ Sbjct 2594 SLFVDMNGLLHSKV----KGVPETHVVVVENEADKAG---FLGAAVFYAQSLYRPMLMVE 2646 Query 1787 SNMVTTVGDSREIASKMLDSYVNSFISLFGVNRDKLDKLVATARDCVKRGDDFQTVIKTF 1846 ++TT ++ M D YV+S +++ V+R L V A + +K G + V+ TF Sbjct 2647 KKLITTANTGLSVSRTMFDLYVDSLLNVLDVDRKSLTSFVNAAHNSLKEGVQLEQVMDTF 2706 Query 1847 TDAARGPAGVESDVETSSIVDALQYAYKHDLQLTTEGFNNYVPSYIKPDSVATADLGCLI 1906 AR ++SDVET SI ++ A + T E NN VP+Y+K D++ ADLG LI Sbjct 2707 IGCARRKCAIDSDVETKSITKSVMSAVNAGVDFTDESCNNLVPTYVKSDTIVAADLGVLI 2766 Query 1907 DLNAASVNQTSIRNANGACIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLTTSRLRSADN 1966 NA V + AN ACIW+ + +LS L+ ++R AC K + +LT ++ + Sbjct 2767 QNNAKHVQANVAKAANVACIWSVDAFNQLSADLQHRLRKACSKTGLKIKLTYNKQEANVP 2826 Query 1967 ILSVKFS 1973 IL+ FS Sbjct 2827 ILTTPFS 2833 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Murine hepatitis virus strain A59] Sequence ID: P0C6X9.1 Length: 7176 Range 1: 1604 to 2833 Score:496 bits(1276), Expect:8e-143, Method:Compositional matrix adjust., Identities:389/1327(29%), Positives:611/1327(46%), Gaps:153/1327(11%) Query 703 RAAQQKNVDVLVTIDGVNFRTVVLNNTTTYRVQLGSVFYKGSDISDTIPTEKMSGEAVYL 762 RA VDVL T+DGVNFR+ + + LGSVF G +++ + G+ + Sbjct 1604 RALLANKVDVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSAIYKGKVFFQ 1663 Query 763 ADNLSEAEKAVLSEVYGTADTAFLHRYYSLLALVKKWKYTVHDGVKSLKLNSNNCYVNVT 822 +LSEA+ + + +G D L +YY++L + K W V + K ++NNCY+NV Sbjct 1664 YSDLSEADLVAVKDAFGF-DEPQLLKYYTMLGMCK-WPVVVCGNYFAFKQSNNNCYINVA 1721 Query 823 MLMLDMLKEIKFIVPALQAAYLKHKGGDSTEFIALIMAYGDCTYGEPDDASRLLHTILSK 882 LML L +KF Q A+ + + G F++L++A G + EP D+ + +L + Sbjct 1722 CLMLQHL-SLKFPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSIDFMRVVLRE 1780 Query 883 AELTTQAKMVWRQWCNV-----CGVQDTTTTGLKACIYVGMNSLDELHATHEECCQCGDV 937 A+L+ CN+ CGV+ G+ A ++ G +L + C CG Sbjct 1781 ADLSGAT-------CNLEFVCKCGVKQEQRKGVDAVMHFGTLDKGDLVRGYNIACTCGS- 1832 Query 938 RKRQLVEHNAPWLLLSGLNEAKVMTPTSQSAGPDYTAFNVFQGVETSVGHYLHVRVKDNL 997 + + N P+L+ S TP + D A N+F G SVGHY HV+ K Sbjct 1833 KLVHCTQFNVPFLICSN-------TPEGRKLPDDVVAANIFTG--GSVGHYTHVKCKPKY 1883 Query 998 LYKYDSGSLSKTSDMKCKMTDVYYPKQRYSADCNVVV-YSLDGNTWADVDPDLSAFYMKD 1056 YD+ +++K S+ K TD Y K +V+ + LD + PDLS +Y + Sbjct 1884 QL-YDACNVNKVSEAKGNFTDCLYLKNLKQTFSSVLTTFYLDDVKCVEYKPDLSQYYCES 1942 Query 1057 GKYFTKKPVIEYSPATILS-GSVYTNSCLVGHDGTIGSDAISSSFNNLLGFDNSKP-VSK 1114 GKY+TK P+I+ T VYTN LVGH +I+ N LGFD + P V Sbjct 1943 GKYYTK-PIIKAQFRTFEKVDGVYTNFKLVGH-------SIAEKLNAKLGFDCNSPFVEY 1994 Query 1115 KLTYSFFPDFEGDVILTEYSTYDPIYKNGAMLHGKPILWVNNSKFD-SALNKFNRATLRQ 1173 K+T +P GDV+L Y Y +G + GKP++W+ + + +L FNR + Sbjct 1995 KITE--WPTATGDVVLASDDLYVSRYSSGCITFGKPVVWLGHEEASLKSLTYFNRPS--- 2049 Query 1174 VYDIAPVTLENKYTVLQDNQIQQVE----------VEAPKEDAKPQSPV----------- 1212 V ENK+ VL + + + P DA + + Sbjct 2050 ------VVCENKFNVLPVDVSEPTDKGPVPAAVLVTGVPGADASAGAGIAKEQKACASAS 2103 Query 1213 ---QVAEDIDNKLPI-------IKCKGLKKPFVKDGYSFVNDPQG-VNVIDTLGIDDLRA 1261 QV ++ + + +K G+KKP +G VNDP V+ +L I D+ Sbjct 2104 VEDQVVTEVRQEPSVSAADVKEVKLNGVKKPVKVEGSVVVNDPTSETKVVKSLSIVDVYD 2163 Query 1262 LYVDRNLRLIVLKENNWSALFNIHTVEKGDLSVIAASGSITRRVKILLGASSLFAQFASV 1321 +++ + +V N S L N TV + V G I K+LL +F + Sbjct 2164 MFL-TGCKYVVWTANELSRLVNSPTVRE---YVKWGMGKIVTPAKLLLLRDEK-QEFVAP 2218 Query 1322 TVNVTTAMGKALGRMTRNVITNTGIIGQGFALLKMLLILPFTFWKSKNQSTVKVEVGALR 1381 V A+ + +K L+ F++ K + V + Sbjct 2219 KVVKAKAIA-------------------CYCAVKWFLLYCFSWIKFNTDNKV------IY 2253 Query 1382 TAGIVTTNVVKQCASAAYDVLVVKFKRIDWKSTLRLLFLICTTGLLLSSLYYLFLFHQVL 1441 T + + K C A + L + +W R FL+ T LL ++ FL+ V+ Sbjct 2254 TTEVASKLTFKLCCLAFKNAL----QTFNWSVVSRGFFLVATVFLL----WFNFLYANVI 2305 Query 1442 TSDVMLDGAEGMLATY-----RELRSYLGIHSLCDGMVEAYRNVSYDVND------FCSN 1490 SD L G L T+ ++ G+ ++CD Y V D FC N Sbjct 2306 LSDFYLPNI-GPLPTFVGQIVAWFKTTFGVSTICD---------FYQVTDLGYRSSFC-N 2354 Query 1491 RSALCNWCLIGQDSLTRYSAFQMIQTHVTSYVINIDWVWF---VMEFALAYVLYTSTFNV 1547 S +C C G D L Y A ++Q HV ++ D++ V+E + Y LYT F Sbjct 2355 GSMVCELCFSGFDMLDNYDAINVVQ-HVVDRRLSFDYISLFKLVVELVIGYSLYTVCFYP 2413 Query 1548 LLLVVSSQYFFSYTGAFVNWRSYNYLVSGYFFCVTHIPLLGLVRIYNFLACLWFLRRFYN 1607 L +++ Q ++ F + ++ + F +P L+R Y + ++ + Sbjct 2414 LFVLIGMQLLTTWLPEFFMLETMHWSARLFVFVANMLPAFTLLRFYIVVTAMYKVYCLCR 2473 Query 1608 HVINGCKDTACLLCYKRNRLTRVEASTVVCGSKRTFYIVANGGTSFCCRHNWNCVDCDTA 1667 HV+ GC CL CYKRNR RV+ STVV GS R + ++ANGGT FC +H WNC++C++ Sbjct 2474 HVMYGCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKHQWNCLNCNSW 2533 Query 1668 GIGNTFICEEVANDLTTSLRRLVKPTDKSHYYVESVTVKDSVVQLHYSREGASCYERYPL 1727 GNTFI E A DL+ L+R V PTD ++Y V V ++L Y R+G Y+ Sbjct 2534 KPGNTFITHEAAADLSKELKRPVNPTDSAYYSVTEVKQVGCSMRLFYERDGQRVYDDVNA 2593 Query 1728 CYFTNLDKLKFKEVCKTPTGIPE-HNFLIYDSSDRGQENLARSACVYYSQVLSKPMLLVD 1786 F +++ L +V G+PE H ++ + +D+ A V+Y+Q L +PML+V+ Sbjct 2594 SLFVDMNGLLHSKV----KGVPETHVVVVENEADKAG---FLGAAVFYAQSLYRPMLMVE 2646 Query 1787 SNMVTTVGDSREIASKMLDSYVNSFISLFGVNRDKLDKLVATARDCVKRGDDFQTVIKTF 1846 ++TT ++ M D YV+S +++ V+R L V A + +K G + V+ TF Sbjct 2647 KKLITTANTGLSVSRTMFDLYVDSLLNVLDVDRKSLTSFVNAAHNSLKEGVQLEQVMDTF 2706 Query 1847 TDAARGPAGVESDVETSSIVDALQYAYKHDLQLTTEGFNNYVPSYIKPDSVATADLGCLI 1906 AR ++SDVET SI ++ A + T E NN VP+Y+K D++ ADLG LI Sbjct 2707 IGCARRKCAIDSDVETKSITKSVMSAVNAGVDFTDESCNNLVPTYVKSDTIVAADLGVLI 2766 Query 1907 DLNAASVNQTSIRNANGACIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLTTSRLRSADN 1966 NA V + AN ACIW+ + +LS L+ ++R AC K + +LT ++ + Sbjct 2767 QNNAKHVQANVAKAANVACIWSVDAFNQLSADLQHRLRKACSKTGLKIKLTYNKQEANVP 2826 Query 1967 ILSVKFS 1973 IL+ FS Sbjct 2827 ILTTPFS 2833 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Murine hepatitis virus strain 2] Sequence ID: P0C6U9.1 Length: 4416 Range 1: 1462 to 2779 Score:493 bits(1269), Expect:5e-142, Method:Compositional matrix adjust., Identities:406/1427(28%), Positives:646/1427(45%), Gaps:172/1427(12%) Query 610 CLLASKD---QVPILNSDVAVQTPEQSFINTVIANGGYHCWHLVTGELIVKGVSYRKLLN 666 C ++S D +V +L D+ + + F+ + N W LV V GV K Sbjct 1462 CFVSSYDVLQEVELLRHDIQLDDDARVFVQAHMDNLPAD-WRLVNKFDSVDGVRTVKYFE 1520 Query 667 WSDQTICYADNKFYVVKGQIALPFDSLEKCRTYLTSRAAQQKNVDVLVTIDGVNFRTVVL 726 + + K + + S+ + R L ++ VDVL T+DGVNFR+ + Sbjct 1521 CPGEIFVSSQGKKFGYVQNGSFKVASVSQIRALLANK------VDVLCTVDGVNFRSCCV 1574 Query 727 NNTTTYRVQLGSVFYKGSDISDTIPTEKMSGEAVYLADNLSEAEKAVLSEVYGTADTAFL 786 + LGSVF G +++ + G+ + LS A+ +++ +G D L Sbjct 1575 AEGEVFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQYSGLSAADLVAVTDAFGF-DEPQL 1633 Query 787 HRYYSLLALVKKWKYTVHDGVKSLKLNSNNCYVNVTMLMLDMLKEIKFIVPALQAAYLKH 846 +YY++L + K W V + K ++NNCY+NV LML L +KF Q A+ + Sbjct 1634 LKYYNMLGMCK-WPVVVCGNYFAFKQSNNNCYINVACLMLQHL-SLKFHKWQWQEAWNEF 1691 Query 847 KGGDSTEFIALIMAYGDCTYGEPDDASRLLHTILSKAELTTQAKMVWRQWCNVCGVQDTT 906 + G F++L++A G + EP D++ + +L +A+L+ A + C CGV+ Sbjct 1692 RSGKPLRFVSLVLAKGSFKFNEPSDSTDFMRVVLREADLSG-ATCDFEFVCK-CGVKQEQ 1749 Query 907 TTGLKACIYVGMNSLDELHATHEECCQCGDVRKRQLVEHNAPWLLLSGLNEAKVMTPTSQ 966 G+ A ++ G +L + C CG+ + + N P+L+ S E K + Sbjct 1750 RKGVDAVMHFGTLDKGDLAKGYTIACTCGN-KLVHCTQLNVPFLICSNKPEGKKLPD--- 1805 Query 967 SAGPDYTAFNVFQGVETSVGHYLHVRVKDNLLYK-YDSGSLSKTSDMKCKMTDVYYPK-- 1023 D A N+F G S+GHY HV+ K Y+ YD+ ++SK S+ K TD Y K Sbjct 1806 ----DVVAANIFTG--GSLGHYTHVKCKPK--YQLYDACNVSKVSEAKGNFTDCLYLKNL 1857 Query 1024 -QRYSADCNVVVYSLDGNTWADVDPDLSAFYMKDGKYFTKKPVIEYSPATILS-GSVYTN 1081 Q +S+ + + LD + +PDLS +Y + GKY+TK P+I+ T VYTN Sbjct 1858 KQTFSS--KLTTFYLDDVKCVEYNPDLSQYYCESGKYYTK-PIIKAQFRTFEKVEGVYTN 1914 Query 1082 SCLVGHDGTIGSDAISSSFNNLLGFDNSKPVSK-KLTYSFFPDFEGDVILTEYSTYDPIY 1140 LVGH +I+ FN LGFD + P ++ K+T +P GDV+L Y Y Sbjct 1915 FKLVGH-------SIAEKFNAKLGFDCNSPFTEYKITE--WPTATGDVVLASDDLYVSRY 1965 Query 1141 KNGAMLHGKPILWVNNSKFD-SALNKFNRATLRQVYDIAPVTLENKYTVLQDNQIQQVEV 1199 G + GKP++W+ + + +L FNR + V ENK+ VL V+V Sbjct 1966 SGGCVTFGKPVIWLGHEEASLKSLTYFNRPS---------VVCENKFNVLP------VDV 2010 Query 1200 EAPKEDAKPQSPVQVAEDIDNK------------------------------------LP 1223 P + + V V + + Sbjct 2011 SEPTDKGPVPAAVLVTGALSGAATAPGTAKEQKVCASDSVVDQVVSGFLSDLSGATVDVK 2070 Query 1224 IIKCKGLKKPFVKDGYSFVNDPQG-VNVIDTLGIDDLRALYVDRNLRLIVLKENNWSALF 1282 +K G+KKP + VNDP V+ +L I D+ +++ R +V N S L Sbjct 2071 EVKLNGVKKPIKVEDSVVVNDPTSETKVVKSLSIVDVYDMFL-TGCRYVVWMANELSRLV 2129 Query 1283 NIHTVE---KGDLSVIAASGSITRRVKILLGASSLFAQFASVTVNVTTAMGKALGRMTRN 1339 N TV K ++ I I ++ +L F V V Sbjct 2130 NSPTVREYVKWGMTKIV----IPAKLVLLRDEKQEFVAPKVVKAKVIAC----------- 2174 Query 1340 VITNTGIIGQGFALLKMLLILPFTFWKSKNQSTVKVEVGALRTAGIVTTNVVKQCASAAY 1399 ++ +K + F++ K + V I TT V + + Sbjct 2175 -----------YSAVKWFFLYCFSWIKFNTDNKV-----------IYTTEVASK---LTF 2209 Query 1400 DVLVVKFKR----IDWKSTLRLLFLICTTGLLLSSLYYLFLFHQVLTSDVMLDGAEGMLA 1455 ++ + FK +W R FL+ T LL ++ FL+ V+ SD L G Sbjct 2210 NLCCLAFKNALQTFNWNVVSRGFFLVATVFLL----WFNFLYANVILSDFYLPNI-GFFP 2264 Query 1456 TY-----RELRSYLGIHSLCDGMVEAYRNVSYDVNDFCSNRSALCNWCLIGQDSLTRYSA 1510 T+ +++ GI +LCD + +V Y + FC N S +C C G D L Y A Sbjct 2265 TFVGQIVAWVKTTFGIFTLCD--LYQVSDVGYR-SSFC-NGSMVCELCFSGFDMLDNYDA 2320 Query 1511 FQMIQTHVTSYVINIDWVWF---VMEFALAYVLYTSTFNVLLLVVSSQYFFSYTGAFVNW 1567 ++Q HV ++ D++ V+E + Y LYT F L ++ Q ++ F Sbjct 2321 INVVQ-HVVDRRVSFDYISLFKLVVELVIGYSLYTVCFYPLFGLIGMQLLTTWLPEFFML 2379 Query 1568 RSYNYLVSGYFFCVTHIPLLGLVRIYNFLACLWFLRRFYNHVINGCKDTACLLCYKRNRL 1627 + ++ + F +P L+R Y + ++ + HV+ GC CL CYKRNR Sbjct 2380 ETMHWSARFFVFVANMLPAFTLLRFYIVVTAMYKIFCLCRHVMYGCSRPGCLFCYKRNRS 2439 Query 1628 TRVEASTVVCGSKRTFYIVANGGTSFCCRHNWNCVDCDTAGIGNTFICEEVANDLTTSLR 1687 RV+ STVV G+ R + ++ANGGT FC +H WNC++C G GNTFI E A DL+ L+ Sbjct 2440 VRVKCSTVVGGTLRYYDVMANGGTGFCAKHQWNCLNCSAFGPGNTFITHEAAADLSKELK 2499 Query 1688 RLVKPTDKSHYYVESVTVKDSVVQLHYSREGASCYERYPLCYFTNLDKLKFKEVCKTPTG 1747 R V PTD ++Y V V ++L Y R+G Y+ F +++ L +V G Sbjct 2500 RPVNPTDSAYYLVTEVKQVGCSMRLFYERDGQRVYDDVSASLFVDMNGLLHSKV----KG 2555 Query 1748 IPE-HNFLIYDSSDRGQENLARSACVYYSQVLSKPMLLVDSNMVTTVGDSREIASKMLDS 1806 +PE H ++ + +D+ +A V+Y+Q L +PMLLV+ ++TT ++ M D Sbjct 2556 VPETHVVVVENEADKAG---FLNAAVFYAQSLYRPMLLVEKKLITTANTGLSVSQTMFDL 2612 Query 1807 YVNSFISLFGVNRDKLDKLVATARDCVKRGDDFQTVIKTFTDAARGPAGVESDVETSSIV 1866 YV+S + + V+R L V A + +K G + V+ TF AR ++SDVET SI Sbjct 2613 YVDSLLGVLDVDRKSLTSFVNAAHNSLKEGVQLEQVMDTFIGCARRKCAIDSDVETKSIT 2672 Query 1867 DALQYAYKHDLQLTTEGFNNYVPSYIKPDSVATADLGCLIDLNAASVNQTSIRNANGACI 1926 ++ A + T E NN VP+Y+K D++ ADLG LI NA V + AN ACI Sbjct 2673 KSIMSAVNAGVDFTDESCNNLVPTYVKSDTIVAADLGVLIQNNAKHVQANVAKAANVACI 2732 Query 1927 WNSSDYMKLSDSLKRQIRIACRKCNIPFRLTTSRLRSADNILSVKFS 1973 W+ + +LS L+ ++R AC K + +LT ++ + IL+ FS Sbjct 2733 WSVDAFNQLSADLQHRLRKACSKTGLKIKLTYNKQEANVPILTTPFS 2779 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Murine hepatitis virus strain 2] Sequence ID: P0C6X8.1 Length: 7124 Range 1: 1462 to 2779 Score:490 bits(1262), Expect:4e-141, Method:Compositional matrix adjust., Identities:405/1426(28%), Positives:644/1426(45%), Gaps:170/1426(11%) Query 610 CLLASKD---QVPILNSDVAVQTPEQSFINTVIANGGYHCWHLVTGELIVKGVSYRKLLN 666 C ++S D +V +L D+ + + F+ + N W LV V GV K Sbjct 1462 CFVSSYDVLQEVELLRHDIQLDDDARVFVQAHMDNLPAD-WRLVNKFDSVDGVRTVKYFE 1520 Query 667 WSDQTICYADNKFYVVKGQIALPFDSLEKCRTYLTSRAAQQKNVDVLVTIDGVNFRTVVL 726 + + K + + S+ + R L ++ VDVL T+DGVNFR+ + Sbjct 1521 CPGEIFVSSQGKKFGYVQNGSFKVASVSQIRALLANK------VDVLCTVDGVNFRSCCV 1574 Query 727 NNTTTYRVQLGSVFYKGSDISDTIPTEKMSGEAVYLADNLSEAEKAVLSEVYGTADTAFL 786 + LGSVF G +++ + G+ + LS A+ +++ +G D L Sbjct 1575 AEGEVFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQYSGLSAADLVAVTDAFGF-DEPQL 1633 Query 787 HRYYSLLALVKKWKYTVHDGVKSLKLNSNNCYVNVTMLMLDMLKEIKFIVPALQAAYLKH 846 +YY++L + K W V + K ++NNCY+NV LML L +KF Q A+ + Sbjct 1634 LKYYNMLGMCK-WPVVVCGNYFAFKQSNNNCYINVACLMLQHL-SLKFHKWQWQEAWNEF 1691 Query 847 KGGDSTEFIALIMAYGDCTYGEPDDASRLLHTILSKAELTTQAKMVWRQWCNVCGVQDTT 906 + G F++L++A G + EP D++ + +L +A+L+ A + C CGV+ Sbjct 1692 RSGKPLRFVSLVLAKGSFKFNEPSDSTDFMRVVLREADLSG-ATCDFEFVCK-CGVKQEQ 1749 Query 907 TTGLKACIYVGMNSLDELHATHEECCQCGDVRKRQLVEHNAPWLLLSGLNEAKVMTPTSQ 966 G+ A ++ G +L + C CG+ + + N P+L+ S E K + Sbjct 1750 RKGVDAVMHFGTLDKGDLAKGYTIACTCGN-KLVHCTQLNVPFLICSNKPEGKKLPD--- 1805 Query 967 SAGPDYTAFNVFQGVETSVGHYLHVRVKDNLLYKYDSGSLSKTSDMKCKMTDVYYPK--- 1023 D A N+F G S+GHY HV+ K YD+ ++SK S+ K TD Y K Sbjct 1806 ----DVVAANIFTG--GSLGHYTHVKCKPKYQL-YDACNVSKVSEAKGNFTDCLYLKNLK 1858 Query 1024 QRYSADCNVVVYSLDGNTWADVDPDLSAFYMKDGKYFTKKPVIEYSPATILS-GSVYTNS 1082 Q +S+ + + LD + +PDLS +Y + GKY+TK P+I+ T VYTN Sbjct 1859 QTFSS--KLTTFYLDDVKCVEYNPDLSQYYCESGKYYTK-PIIKAQFRTFEKVEGVYTNF 1915 Query 1083 CLVGHDGTIGSDAISSSFNNLLGFDNSKPVSK-KLTYSFFPDFEGDVILTEYSTYDPIYK 1141 LVGH +I+ FN LGFD + P ++ K+T +P GDV+L Y Y Sbjct 1916 KLVGH-------SIAEKFNAKLGFDCNSPFTEYKITE--WPTATGDVVLASDDLYVSRYS 1966 Query 1142 NGAMLHGKPILWVNNSKFD-SALNKFNRATLRQVYDIAPVTLENKYTVLQDNQIQQVEVE 1200 G + GKP++W+ + + +L FNR + V ENK+ VL V+V Sbjct 1967 GGCVTFGKPVIWLGHEEASLKSLTYFNRPS---------VVCENKFNVLP------VDVS 2011 Query 1201 APKEDAKPQSPVQVAEDIDNK------------------------------------LPI 1224 P + + V V + + Sbjct 2012 EPTDKGPVPAAVLVTGALSGAATAPGTAKEQKVCASDSVVDQVVSGFLSDLSGATVDVKE 2071 Query 1225 IKCKGLKKPFVKDGYSFVNDPQG-VNVIDTLGIDDLRALYVDRNLRLIVLKENNWSALFN 1283 +K G+KKP + VNDP V+ +L I D+ +++ R +V N S L N Sbjct 2072 VKLNGVKKPIKVEDSVVVNDPTSETKVVKSLSIVDVYDMFL-TGCRYVVWMANELSRLVN 2130 Query 1284 IHTVE---KGDLSVIAASGSITRRVKILLGASSLFAQFASVTVNVTTAMGKALGRMTRNV 1340 TV K ++ I I ++ +L F V V Sbjct 2131 SPTVREYVKWGMTKIV----IPAKLVLLRDEKQEFVAPKVVKAKVIAC------------ 2174 Query 1341 ITNTGIIGQGFALLKMLLILPFTFWKSKNQSTVKVEVGALRTAGIVTTNVVKQCASAAYD 1400 ++ +K + F++ K + V I TT V + ++ Sbjct 2175 ----------YSAVKWFFLYCFSWIKFNTDNKV-----------IYTTEVASK---LTFN 2210 Query 1401 VLVVKFKR----IDWKSTLRLLFLICTTGLLLSSLYYLFLFHQVLTSDVMLDGAEGMLAT 1456 + + FK +W R FL+ T LL ++ FL+ V+ SD L G T Sbjct 2211 LCCLAFKNALQTFNWNVVSRGFFLVATVFLL----WFNFLYANVILSDFYLPNI-GFFPT 2265 Query 1457 Y-----RELRSYLGIHSLCDGMVEAYRNVSYDVNDFCSNRSALCNWCLIGQDSLTRYSAF 1511 + +++ GI +LCD + +V Y + FC N S +C C G D L Y A Sbjct 2266 FVGQIVAWVKTTFGIFTLCD--LYQVSDVGYR-SSFC-NGSMVCELCFSGFDMLDNYDAI 2321 Query 1512 QMIQTHVTSYVINIDWVWF---VMEFALAYVLYTSTFNVLLLVVSSQYFFSYTGAFVNWR 1568 ++Q HV ++ D++ V+E + Y LYT F L ++ Q ++ F Sbjct 2322 NVVQ-HVVDRRVSFDYISLFKLVVELVIGYSLYTVCFYPLFGLIGMQLLTTWLPEFFMLE 2380 Query 1569 SYNYLVSGYFFCVTHIPLLGLVRIYNFLACLWFLRRFYNHVINGCKDTACLLCYKRNRLT 1628 + ++ + F +P L+R Y + ++ + HV+ GC CL CYKRNR Sbjct 2381 TMHWSARFFVFVANMLPAFTLLRFYIVVTAMYKIFCLCRHVMYGCSRPGCLFCYKRNRSV 2440 Query 1629 RVEASTVVCGSKRTFYIVANGGTSFCCRHNWNCVDCDTAGIGNTFICEEVANDLTTSLRR 1688 RV+ STVV G+ R + ++ANGGT FC +H WNC++C G GNTFI E A DL+ L+R Sbjct 2441 RVKCSTVVGGTLRYYDVMANGGTGFCAKHQWNCLNCSAFGPGNTFITHEAAADLSKELKR 2500 Query 1689 LVKPTDKSHYYVESVTVKDSVVQLHYSREGASCYERYPLCYFTNLDKLKFKEVCKTPTGI 1748 V PTD ++Y V V ++L Y R+G Y+ F +++ L +V G+ Sbjct 2501 PVNPTDSAYYLVTEVKQVGCSMRLFYERDGQRVYDDVSASLFVDMNGLLHSKV----KGV 2556 Query 1749 PE-HNFLIYDSSDRGQENLARSACVYYSQVLSKPMLLVDSNMVTTVGDSREIASKMLDSY 1807 PE H ++ + +D+ +A V+Y+Q L +PMLLV+ ++TT ++ M D Y Sbjct 2557 PETHVVVVENEADKAG---FLNAAVFYAQSLYRPMLLVEKKLITTANTGLSVSQTMFDLY 2613 Query 1808 VNSFISLFGVNRDKLDKLVATARDCVKRGDDFQTVIKTFTDAARGPAGVESDVETSSIVD 1867 V+S + + V+R L V A + +K G + V+ TF AR ++SDVET SI Sbjct 2614 VDSLLGVLDVDRKSLTSFVNAAHNSLKEGVQLEQVMDTFIGCARRKCAIDSDVETKSITK 2673 Query 1868 ALQYAYKHDLQLTTEGFNNYVPSYIKPDSVATADLGCLIDLNAASVNQTSIRNANGACIW 1927 ++ A + T E NN VP+Y+K D++ ADLG LI NA V + AN ACIW Sbjct 2674 SIMSAVNAGVDFTDESCNNLVPTYVKSDTIVAADLGVLIQNNAKHVQANVAKAANVACIW 2733 Query 1928 NSSDYMKLSDSLKRQIRIACRKCNIPFRLTTSRLRSADNILSVKFS 1973 + + +LS L+ ++R AC K + +LT ++ + IL+ FS Sbjct 2734 SVDAFNQLSADLQHRLRKACSKTGLKIKLTYNKQEANVPILTTPFS 2779 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Murine hepatitis virus strain JHM] Sequence ID: P0C6V1.1 Length: 4474 Range 1: 1603 to 2836 Score:484 bits(1247), Expect:2e-139, Method:Compositional matrix adjust., Identities:390/1336(29%), Positives:607/1336(45%), Gaps:167/1336(12%) Query 703 RAAQQKNVDVLVTIDGVNFRTVVLNNTTTYRVQLGSVFYKGSDISDTIPTEKMSGEAVYL 762 RA VDVL T+DGVNFR+ + + LGSVF G +++ + G+ + Sbjct 1603 RALLANKVDVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQ 1662 Query 763 ADNLSEAEKAVLSEVYGTADTAFLHRYYSLLALVKKWKYTVHDGVKSLKLNSNNCYVNVT 822 LS A+ A + + +G D L +YYS+L + K W V + K ++NNCY+NV Sbjct 1663 YSGLSAADLAAVKDAFGF-DEPQLLQYYSMLGMCK-WPVVVCGNYFAFKQSNNNCYINVA 1720 Query 823 MLMLDMLKEIKFIVPALQAAYLKHKGGDSTEFIALIMAYGDCTYGEPDDASRLLHTILSK 882 LML L +KF + + + G F++L++A G + EP D++ + L + Sbjct 1721 CLMLQHL-SLKFPKWQWRRPGNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFIRVELRE 1779 Query 883 AEL---TTQAKMVWRQWCNVCGVQDTTTTGLKACIYVGMNSLDELHATHEECCQCGDVRK 939 A+L T + + + CGV+ G+ A ++ G L + C CGD + Sbjct 1780 ADLSGATCDLEFICK-----CGVKQEQRKGVDAVMHFGTLDKSGLVKGYNIACTCGD-KL 1833 Query 940 RQLVEHNAPWLLLSGLNEAKVMTPTSQSAGPDYTAFNVFQGVETSVGHYLHVRVKDNLLY 999 + N P+L+ S TP + D A N+F G SVGHY HV+ K Y Sbjct 1834 VHCTQFNVPFLICSN-------TPEGKKLPDDVVAANIFTG--GSVGHYTHVKCKPK--Y 1882 Query 1000 K-YDSGSLSKTSDMKCKMTDVYYPKQRYSADCNVVV-YSLDGNTWADVDPDLSAFYMKDG 1057 + YD+ ++SK S+ K TD Y K +V+ Y LD PDLS +Y + G Sbjct 1883 QLYDACNVSKVSEAKGNFTDCLYLKNLKQTFSSVLTTYYLDDVKCVAYKPDLSQYYCESG 1942 Query 1058 KYFTKKPVIEYSPATILS-GSVYTNSCLVGHDGTIGSDAISSSFNNLLGFDNSKPVSK-K 1115 KY+TK P+I+ T VYTN LVGHD I+ N LGFD + P + K Sbjct 1943 KYYTK-PIIKAQFRTFEKVEGVYTNFKLVGHD-------IAEKLNAKLGFDCNSPFMEYK 1994 Query 1116 LTYSFFPDFEGDVILTEYSTYDPIYKNGAMLHGKPILWVNNSKFD-SALNKFNRATLRQV 1174 +T +P GDV+L Y Y G + GKP++W + + +L FNR + Sbjct 1995 ITE--WPTATGDVVLASDDLYVSRYSGGCVTFGKPVIWRGHEEASLKSLTYFNRPS---- 2048 Query 1175 YDIAPVTLENKYTVLQDNQIQQVEVEAPKEDAKPQSPVQV-------------------- 1214 V ENK+ VL V+V P + S V V Sbjct 2049 -----VVCENKFNVLP------VDVSEPTDRRPVPSAVLVTGAASGADASAISTEPGTAK 2097 Query 1215 ------AEDIDNKLPI---------------IKCKGLKKPFVKDGYSFVNDPQG-VNVID 1252 ++ +++++ + +K G+KKP + VNDP V+ Sbjct 2098 EQKACASDSVEDQIVMEAQKKSSVTTVAVKEVKLNGVKKPVKWNCSVVVNDPTSETKVVK 2157 Query 1253 TLGIDDLRALYVDRNLRLIVLKENNWSALFNIHTVEKGDLSVIAASGSITRRVKILLGAS 1312 +L I D+ +++ R +V N S L N TV R + G S Sbjct 2158 SLSIVDVYDMFL-TGCRYVVWTANELSRLINSPTV----------------REYVKWGMS 2200 Query 1313 SLFAQFASVTVNVTTAMGKALGRMTRNVITNTGIIGQGFALLKMLLILPFTFWKSKNQST 1372 L + N+ + + V+ I G +K L+ F++ K + Sbjct 2201 KLI-----IPANLLLLRDEKQEFVAPKVVKAKAIACYG--AVKWFLLYCFSWIKFNTDNK 2253 Query 1373 VKVEVGALRTAGIVTTNVVKQCASAAYDVLVVKFKRIDWKSTLRLLFLICTTGLLLSSLY 1432 V + T + + K C A + L + +W R FL+ T LL + Sbjct 2254 V------IYTTEVASKLTFKLCCLAFKNAL----QTFNWSVVSRGFFLVATVFLL----W 2299 Query 1433 YLFLFHQVLTSDVMLDGAEGMLATY-----RELRSYLGIHSLCDGMVEAYRNVSYDVND- 1486 + FL+ V+ SD L G L + +++ G+ ++CD Y V D Sbjct 2300 FNFLYANVILSDFYLPNI-GPLPMFVGQIVAWVKTTFGVLTICD---------FYQVTDL 2349 Query 1487 -----FCSNRSALCNWCLIGQDSLTRYSAFQMIQTHVTSYVINIDWVWF---VMEFALAY 1538 FC N S +C C G D L Y + ++Q HV ++ D++ V+E + Y Sbjct 2350 GYRSSFC-NGSMVCELCFSGFDMLDNYESINVVQ-HVVDRRVSFDYISLFKLVVELVIGY 2407 Query 1539 VLYTSTFNVLLLVVSSQYFFSYTGAFVNWRSYNYLVSGYFFCVTHIPLLGLVRIYNFLAC 1598 LYT F L ++V Q ++ F + ++ + F +P L+R Y + Sbjct 2408 SLYTVCFYPLFVLVGMQLLTTWLPEFFMLGTMHWSARLFVFVANMLPAFTLLRFYIVVTA 2467 Query 1599 LWFLRRFYNHVINGCKDTACLLCYKRNRLTRVEASTVVCGSKRTFYIVANGGTSFCCRHN 1658 ++ + HV+ GC CL CYKRNR RV+ STVV GS R + ++ANGGT FC +H Sbjct 2468 MYKVYCLCRHVMYGCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKHQ 2527 Query 1659 WNCVDCDTAGIGNTFICEEVANDLTTSLRRLVKPTDKSHYYVESVTVKDSVVQLHYSREG 1718 WNC++C++ GNTFI E A DL+ L+R V PTD ++Y V V ++L Y R+G Sbjct 2528 WNCLNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVIEVKQVGCSMRLFYERDG 2587 Query 1719 ASCYERYPLCYFTNLDKLKFKEVCKTPTGIPE-HNFLIYDSSDRGQENLARSACVYYSQV 1777 Y+ F +++ L +V G+PE H ++ + +D+ +A V+Y+Q Sbjct 2588 QRVYDDVSASLFVDMNGLLHSKV----KGVPETHVVVVENEADKAG---FLNAAVFYAQS 2640 Query 1778 LSKPMLLVDSNMVTTVGDSREIASKMLDSYVNSFISLFGVNRDKLDKLVATARDCVKRGD 1837 L +PML+V+ ++TT ++ M D YV S + V+R L V A + +K G Sbjct 2641 LYRPMLMVEKKLITTANTGLSVSRTMFDLYVYSLLRHLDVDRKSLTSFVNAAHNSLKEGV 2700 Query 1838 DFQTVIKTFTDAARGPAGVESDVETSSIVDALQYAYKHDLQLTTEGFNNYVPSYIKPDSV 1897 + V+ TF AR ++SDVET SI ++ A +++T E NN VP+Y+K D++ Sbjct 2701 QLEQVMDTFVGCARRKCAIDSDVETKSITKSVMAAVNAGVEVTDESCNNLVPTYVKSDTI 2760 Query 1898 ATADLGCLIDLNAASVNQTSIRNANGACIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLT 1957 ADLG LI NA V + AN ACIW+ + +LS L+ ++R AC K + +LT Sbjct 2761 VAADLGVLIQNNAKHVQSNVAKAANVACIWSVDAFNQLSADLQHRLRKACVKTGLKIKLT 2820 Query 1958 TSRLRSADNILSVKFS 1973 ++ + IL+ FS Sbjct 2821 YNKQEANVPILTTPFS 2836 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyl transferase nsp16; AltName: Full=nsp16 [Murine hepatitis virus strain JHM] Sequence ID: P0C6Y0.1 Length: 7180 Range 1: 1603 to 2836 Score:484 bits(1245), Expect:6e-139, Method:Compositional matrix adjust., Identities:388/1332(29%), Positives:605/1332(45%), Gaps:159/1332(11%) Query 703 RAAQQKNVDVLVTIDGVNFRTVVLNNTTTYRVQLGSVFYKGSDISDTIPTEKMSGEAVYL 762 RA VDVL T+DGVNFR+ + + LGSVF G +++ + G+ + Sbjct 1603 RALLANKVDVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQ 1662 Query 763 ADNLSEAEKAVLSEVYGTADTAFLHRYYSLLALVKKWKYTVHDGVKSLKLNSNNCYVNVT 822 LS A+ A + + +G D L +YYS+L + K W V + K ++NNCY+NV Sbjct 1663 YSGLSAADLAAVKDAFGF-DEPQLLQYYSMLGMCK-WPVVVCGNYFAFKQSNNNCYINVA 1720 Query 823 MLMLDMLKEIKFIVPALQAAYLKHKGGDSTEFIALIMAYGDCTYGEPDDASRLLHTILSK 882 LML L +KF + + + G F++L++A G + EP D++ + L + Sbjct 1721 CLMLQHL-SLKFPKWQWRRPGNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFIRVELRE 1779 Query 883 AELTTQAKMVWRQWCNVCGVQDTTTTGLKACIYVGMNSLDELHATHEECCQCGDVRKRQL 942 A+L+ + ++ CGV+ G+ A ++ G L + C CGD + Sbjct 1780 ADLSGATCDL--EFICKCGVKQEQRKGVDAVMHFGTLDKSGLVKGYNIACTCGD-KLVHC 1836 Query 943 VEHNAPWLLLSGLNEAKVMTPTSQSAGPDYTAFNVFQGVETSVGHYLHVRVKDNLLYKYD 1002 + N P+L+ S TP + D A N+F G SVGHY HV+ K YD Sbjct 1837 TQFNVPFLICSN-------TPEGKKLPDDVVAANIFTG--GSVGHYTHVKCKPKYQL-YD 1886 Query 1003 SGSLSKTSDMKCKMTDVYYPKQRYSADCNVVV-YSLDGNTWADVDPDLSAFYMKDGKYFT 1061 + ++SK S+ K TD Y K +V+ Y LD PDLS +Y + GKY+T Sbjct 1887 ACNVSKVSEAKGNFTDCLYLKNLKQTFSSVLTTYYLDDVKCVAYKPDLSQYYCESGKYYT 1946 Query 1062 KKPVIEYSPATILS-GSVYTNSCLVGHDGTIGSDAISSSFNNLLGFDNSKPVSK-KLTYS 1119 K P+I+ T VYTN LVGHD I+ N LGFD + P + K+T Sbjct 1947 K-PIIKAQFRTFEKVEGVYTNFKLVGHD-------IAEKLNAKLGFDCNSPFMEYKITE- 1997 Query 1120 FFPDFEGDVILTEYSTYDPIYKNGAMLHGKPILWVNNSKFD-SALNKFNRATLRQVYDIA 1178 +P GDV+L Y Y G + GKP++W + + +L FNR + Sbjct 1998 -WPTATGDVVLASDDLYVSRYSGGCVTFGKPVIWRGHEEASLKSLTYFNRPS-------- 2048 Query 1179 PVTLENKYTVLQDNQIQQVEVEAPKEDAKPQSPVQV------------------------ 1214 V ENK+ VL V+V P + S V V Sbjct 2049 -VVCENKFNVLP------VDVSEPTDRRPVPSAVLVTGAASGADASAISTEPGTAKEQKA 2101 Query 1215 --AEDIDNKLPI---------------IKCKGLKKPFVKDGYSFVNDPQG-VNVIDTLGI 1256 ++ +++++ + +K G+KKP + VNDP V+ +L I Sbjct 2102 CASDSVEDQIVMEAQKKSSVTTVAVKEVKLNGVKKPVKWNCSVVVNDPTSETKVVKSLSI 2161 Query 1257 DDLRALYVDRNLRLIVLKENNWSALFNIHTVEKGDLSVIAASGSITRRVKILLGASSLFA 1316 D+ +++ R +V N S L N TV R + G S L Sbjct 2162 VDVYDMFL-TGCRYVVWTANELSRLINSPTV----------------REYVKWGMSKLI- 2203 Query 1317 QFASVTVNVTTAMGKALGRMTRNVITNTGIIGQGFALLKMLLILPFTFWKSKNQSTVKVE 1376 + N+ + + V+ I G +K L+ F++ K + V Sbjct 2204 ----IPANLLLLRDEKQEFVAPKVVKAKAIACYG--AVKWFLLYCFSWIKFNTDNKV--- 2254 Query 1377 VGALRTAGIVTTNVVKQCASAAYDVLVVKFKRIDWKSTLRLLFLICTTGLLLSSLYYLFL 1436 + T + + K C A + L + +W R FL+ T LL ++ FL Sbjct 2255 ---IYTTEVASKLTFKLCCLAFKNAL----QTFNWSVVSRGFFLVATVFLL----WFNFL 2303 Query 1437 FHQVLTSDVMLDGAEGMLATY-----RELRSYLGIHSLCDGMVEAYRNVSYDVND----- 1486 + V+ SD L G L + +++ G+ ++CD Y V D Sbjct 2304 YANVILSDFYLPNI-GPLPMFVGQIVAWVKTTFGVLTICD---------FYQVTDLGYRS 2353 Query 1487 -FCSNRSALCNWCLIGQDSLTRYSAFQMIQTHVTSYVINIDWV---WFVMEFALAYVLYT 1542 FC N S +C C G D L Y + ++Q HV ++ D++ V+E + Y LYT Sbjct 2354 SFC-NGSMVCELCFSGFDMLDNYESINVVQ-HVVDRRVSFDYISLFKLVVELVIGYSLYT 2411 Query 1543 STFNVLLLVVSSQYFFSYTGAFVNWRSYNYLVSGYFFCVTHIPLLGLVRIYNFLACLWFL 1602 F L ++V Q ++ F + ++ + F +P L+R Y + ++ + Sbjct 2412 VCFYPLFVLVGMQLLTTWLPEFFMLGTMHWSARLFVFVANMLPAFTLLRFYIVVTAMYKV 2471 Query 1603 RRFYNHVINGCKDTACLLCYKRNRLTRVEASTVVCGSKRTFYIVANGGTSFCCRHNWNCV 1662 HV+ GC CL CYKRNR RV+ STVV GS R + ++ANGGT FC +H WNC+ Sbjct 2472 YCLCRHVMYGCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKHQWNCL 2531 Query 1663 DCDTAGIGNTFICEEVANDLTTSLRRLVKPTDKSHYYVESVTVKDSVVQLHYSREGASCY 1722 +C++ GNTFI E A DL+ L+R V PTD ++Y V V ++L Y R+G Y Sbjct 2532 NCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVIEVKQVGCSMRLFYERDGQRVY 2591 Query 1723 ERYPLCYFTNLDKLKFKEVCKTPTGIPE-HNFLIYDSSDRGQENLARSACVYYSQVLSKP 1781 + F +++ L +V G+PE H ++ + +D+ +A V+Y+Q L +P Sbjct 2592 DDVSASLFVDMNGLLHSKV----KGVPETHVVVVENEADKAG---FLNAAVFYAQSLYRP 2644 Query 1782 MLLVDSNMVTTVGDSREIASKMLDSYVNSFISLFGVNRDKLDKLVATARDCVKRGDDFQT 1841 ML+V+ ++TT ++ M D YV S + V+R L V A + +K G + Sbjct 2645 MLMVEKKLITTANTGLSVSRTMFDLYVYSLLRHLDVDRKSLTSFVNAAHNSLKEGVQLEQ 2704 Query 1842 VIKTFTDAARGPAGVESDVETSSIVDALQYAYKHDLQLTTEGFNNYVPSYIKPDSVATAD 1901 V+ TF AR ++SDVET SI ++ A +++T E NN VP+Y+K D++ AD Sbjct 2705 VMDTFVGCARRKCAIDSDVETKSITKSVMAAVNAGVEVTDESCNNLVPTYVKSDTIVAAD 2764 Query 1902 LGCLIDLNAASVNQTSIRNANGACIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLTTSRL 1961 LG LI NA V + AN ACIW+ + +LS L+ ++R AC K + +LT ++ Sbjct 2765 LGVLIQNNAKHVQSNVAKAANVACIWSVDAFNQLSADLQHRLRKACVKTGLKIKLTYNKQ 2824 Query 1962 RSADNILSVKFS 1973 + IL+ FS Sbjct 2825 EANVPILTTPFS 2836 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bovine respiratory coronavirus (strain 98TXSF-110-LUN)] Sequence ID: P0C6T9.1 Length: 4383 Range 1: 1483 to 2746 Score:482 bits(1241), Expect:1e-138, Method:Compositional matrix adjust., Identities:400/1374(29%), Positives:646/1374(47%), Gaps:131/1374(9%) Query 621 LNSDVAVQTPEQSFINT---VIANGGYHCWHLVTGELIVKGVSYRKLLNWSDQT-ICYAD 676 L D+A+ ++F+ + V+ G W +V + GV K IC D Sbjct 1483 LRHDIALDDDARTFVQSNVDVVPEG----WRVVNKFYQINGVRTVKYFECPGGIDICSQD 1538 Query 677 NKF-YVVKGQIALPFDSLEKCRTYLTSRAAQQKNVDVLVTIDGVNFRTVVLNNTTTYRVQ 735 F YV +G S K T +A VD+L+T+DGVNF + + Sbjct 1539 KVFGYVQQG-------SFNK-ATVAQIKALFLDKVDILLTVDGVNFTNRFVPVGENFGKS 1590 Query 736 LGSVFYKGSDISDTIPTEKMSGEAVYLADNLS-EAEKAVLSEVYGTADTAFLHRYYSLLA 794 LG+VF G +++ G+ + DNLS E KAV S D L YY++L Sbjct 1591 LGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRSSF--NFDQKELLAYYNMLV 1648 Query 795 LVKKWKYTVHDGVKSLKLNSNNCYVNVTMLMLDMLKEIKFIVPALQAAYLKHKGGDSTEF 854 KW+ + + K +NNC+VNV+ LML L +KF + Q A+L+ + G F Sbjct 1649 NCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSL-NLKFKIVQWQEAWLEFRSGRPARF 1707 Query 855 IALIMAYGDCTYGEPDDASRLLHTILSKAELTTQAKMVWRQWCNVCGVQDTTTTGLKACI 914 ++L++A G +G+P D+ L + S+ +LT A + C CGV+ TG+ A + Sbjct 1708 VSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTG-AICDFEIACK-CGVKQEQRTGVDAVM 1765 Query 915 YVGMNSLDELHATHEECCQCGDVRKRQLVEHNAPWLLLSGLNEAKVMTPTSQSAGPDYTA 974 + G S ++L + C CG + V + P+L+ S TP S + Sbjct 1766 HFGTLSREDLEIGYTVDCSCGK-KLIHCVRFDVPFLICSN-------TPASVKLPKGVGS 1817 Query 975 FNVFQGVETSVGHYLHVRVKDNLLYK-YDSGSLSKTSDMKCKMTDVYYPKQ-RYSADCNV 1032 N+F+G VGHY+HV+ + + Y+ YD+ ++ K +D+ ++D Y K + + + Sbjct 1818 ANIFKG--DKVGHYVHVKCEQS--YQLYDASNVKKVTDVTGNLSDCLYLKNLKQTFKSVL 1873 Query 1033 VVYSLDGNTWADVDPDLSAFYMKDGKYFTKKPVIEYSPATILSGSVYTNSCLVGHDGTIG 1092 Y LD + PDLS +Y GKY+T++ + VYTN L+GH Sbjct 1874 TTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGH----- 1928 Query 1093 SDAISSSFNNLLGFDNSKP-VSKKLTYSFFPDFEGDVILTEYSTYDPIYKNGAMLHGKPI 1151 I N LGFD+SK V K+T +P GDV+L Y Y+ G + GKP+ Sbjct 1929 --TICDILNAKLGFDSSKEFVEYKVTE--WPTATGDVVLATDDLYVKRYERGCITFGKPV 1984 Query 1152 LWVNNSKFD-SALNKFNRATLRQVYDIAPVTLENKYTVLQDNQIQQVEVEAPKEDAKPQS 1210 +W+++ + ++L FNR L ENK+ VL+ + + DAK Sbjct 1985 IWLSHEQASLNSLTYFNRPLLVD---------ENKFDVLK-VDDVDDGGDISESDAKESK 2034 Query 1211 PVQVAEDIDNKLPIIKCKGLKKPF-VKDGYSFVNDPQGVNVIDTLGIDDLRALYVDRNLR 1269 + IIK G+KKPF V+D +D + + +L I D+ +++ R Sbjct 2035 EIN----------IIKLSGVKKPFKVEDSVIVNDDTSEIKYVKSLSIVDVYDMWL-TGCR 2083 Query 1270 LIVLKENNWSALFNIHTVEKGDLSVIAASGSITRRVKI-LLGASSLFAQFASVTVNVTTA 1328 +V N+ S N+ T+ K G + I LL + F NV A Sbjct 2084 YVVRTANDLSMAVNVPTIRK-----FIKFGMTLVSIPIDLLNLREIKPVF-----NVVKA 2133 Query 1329 MGKALGRMTRNVITNTGIIGQGFALLKMLLILPFTFWK--SKNQSTVKVEVGALRTAGIV 1386 + RN I+ F +K L +L F + K + N+ EV + T +V Sbjct 2134 V--------RNKISAC------FNFIKWLFVLLFGWIKISADNKVIYTTEVASKLTCKLV 2179 Query 1387 TTNVVKQCASAAYDVLVVKFKRIDWKSTLRLLFLICTTGLLLSSLYYLFLFHQVLTSDVM 1446 + A+ + FK W R +I T LL ++ F++ V+ SD Sbjct 2180 ---------ALAFKNAFLTFK---WSVVARGACIIATIFLL----WFNFIYANVIFSDFY 2223 Query 1447 LDGAEGMLATY-----RELRSYLGIHSLCDGMVEAYRNVSYDVNDFCSNRSALCNWCLIG 1501 L G L T+ + ++S + ++CD + + ++V + N +C N S C +CL G Sbjct 2224 LPKI-GFLPTFVGKIAQWIKSTFSLVTICD--LYSIQDVGFK-NQYC-NGSIACQFCLAG 2278 Query 1502 QDSLTRYSAFQMIQTHV--TSYVINIDWVWFVMEFALAYVLYTSTFNVLLLVVSSQYFFS 1559 D L Y A ++Q ++V + V+E ++Y LYT+ F L ++S Q + Sbjct 2279 FDMLDNYKAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTT 2338 Query 1560 YTGAFVNWRSYNYLVSGYFFCVTHIPLLGLVRIYNFLACLWFLRRFYNHVINGCKDTACL 1619 + + ++ V +P +R Y +A L + HV GC CL Sbjct 2339 WLPELFMLSTLHWSVRLLVSLANMLPAHVFMRFYIIIASFIKLFSLFRHVAYGCSKPGCL 2398 Query 1620 LCYKRNRLTRVEASTVVCGSKRTFYIVANGGTSFCCRHNWNCVDCDTAGIGNTFICEEVA 1679 CYKRNR RV+ ST+V G R + ++ANGGT FC +H WNC+DCD+ GNTFI E A Sbjct 2399 FCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAA 2458 Query 1680 NDLTTSLRRLVKPTDKSHYYVESVTVKDSVVQLHYSREGASCYERYPLCYFTNLDKLKFK 1739 DL+ L+R ++PTD +++ V V ++L Y R+G Y+ F + L Sbjct 2459 LDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHS 2518 Query 1740 EVCKTPTGIPEHNFLIYDSSDRGQENLARSACVYYSQVLSKPMLLVDSNMVTTVGDSREI 1799 +V G+P + ++ ++ D + N +A V+Y+Q L +P+L+VD N++TT + Sbjct 2519 KV----KGVPNMHVVVVEN-DADKANFLNAA-VFYAQSLFRPILMVDKNLITTANTGTSV 2572 Query 1800 ASKMLDSYVNSFISLFGVNRDKLDKLVATARDCVKRGDDFQTVIKTFTDAARGPAGVESD 1859 M D YV++F+S+F V++ L+ L+ATA +K+G V+ TF AR ++SD Sbjct 2573 TETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSD 2632 Query 1860 VETSSIVDALQYAYKHDLQLTTEGFNNYVPSYIKPDSVATADLGCLIDLNAASVNQTSIR 1919 V+T + D++ A L+LT E NN VP+Y+K D++ ADLG LI +A V + Sbjct 2633 VDTKCLADSVMSAVSAGLELTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAK 2692 Query 1920 NANGACIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLTTSRLRSADNILSVKFS 1973 A +CIW+ + +LS + +++ AC K + +LT ++ + ++L+ FS Sbjct 2693 IAGVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFS 2746 Range 2: 1276 to 1425 Score:107 bits(266), Expect:6e-23, Method:Compositional matrix adjust., Identities:63/150(42%), Positives:85/150(56%), Gaps:2/150(1%) Query 347 DVTLVFGDAIAVARATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDYVNFYGP 406 +V V GD I V++ + ++VN AN H+ HGGG+A AI A+G E+ D V G Sbjct 1276 NVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKSKGV 1335 Query 407 LNVGDSTLLKGHGLATGILHVVGPDAR--ANQDIQLLKRCYKAFNKYPLVVSPLISAGIF 464 GD + G L +L+VVGPDAR Q LL+R YK NKY VV+ LISAGIF Sbjct 1336 CATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISAGIF 1395 Query 465 CVEPRVSLEYLLSVVHTKTYVVVNSEKVYN 494 V VSL YLL + +V N+++ ++ Sbjct 1396 SVPSDVSLTYLLGTAEKQVVLVSNNQEDFD 1425 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bovine enteric coronavirus (strain 98TXSF-110-ENT)] Sequence ID: P0C6T8.1 Length: 4383 Range 1: 1483 to 2746 Score:482 bits(1240), Expect:2e-138, Method:Compositional matrix adjust., Identities:400/1374(29%), Positives:647/1374(47%), Gaps:131/1374(9%) Query 621 LNSDVAVQTPEQSFINT---VIANGGYHCWHLVTGELIVKGVSYRKLLNWSDQT-ICYAD 676 L D+A+ ++F+ + V+ G W +V + GV K IC D Sbjct 1483 LRHDIALDDDARTFVQSNVDVVPEG----WRVVNKFYQINGVRTVKYFECPGGIDICSQD 1538 Query 677 NKF-YVVKGQIALPFDSLEKCRTYLTSRAAQQKNVDVLVTIDGVNFRTVVLNNTTTYRVQ 735 F YV +G S K T +A VD+L+T+DGVNF + ++ Sbjct 1539 KVFGYVQQG-------SFNK-ATVAQIKALFLDKVDILLTVDGVNFTNRFVPVGESFGKS 1590 Query 736 LGSVFYKGSDISDTIPTEKMSGEAVYLADNLS-EAEKAVLSEVYGTADTAFLHRYYSLLA 794 LG+VF G +++ G+ + DNLS E KAV S D L YY++L Sbjct 1591 LGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRSSF--NFDQKELLAYYNMLV 1648 Query 795 LVKKWKYTVHDGVKSLKLNSNNCYVNVTMLMLDMLKEIKFIVPALQAAYLKHKGGDSTEF 854 KW+ + + K +NNC+VNV+ LML L +KF + Q A+L+ + G F Sbjct 1649 NCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSL-NLKFKIVQWQEAWLEFRSGRPARF 1707 Query 855 IALIMAYGDCTYGEPDDASRLLHTILSKAELTTQAKMVWRQWCNVCGVQDTTTTGLKACI 914 ++L++A G +G+P D+ L + S+ +LT A + C CGV+ TG+ A + Sbjct 1708 VSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTG-AICDFEIACK-CGVKQEQRTGVDAVM 1765 Query 915 YVGMNSLDELHATHEECCQCGDVRKRQLVEHNAPWLLLSGLNEAKVMTPTSQSAGPDYTA 974 + G S ++L + C CG + V + P+L+ S TP S + Sbjct 1766 HFGTLSREDLEIGYTVDCSCGK-KLIHCVRFDVPFLICSN-------TPASVKLPKGVGS 1817 Query 975 FNVFQGVETSVGHYLHVRVKDNLLYK-YDSGSLSKTSDMKCKMTDVYYPKQ-RYSADCNV 1032 N+F+G VGHY+HV+ + + Y+ YD+ ++ K +D+ ++D Y K + + + Sbjct 1818 ANIFKG--DKVGHYVHVKCEQS--YQLYDASNVKKVTDVTGNLSDCLYLKNLKQTFKSVL 1873 Query 1033 VVYSLDGNTWADVDPDLSAFYMKDGKYFTKKPVIEYSPATILSGSVYTNSCLVGHDGTIG 1092 Y LD + +PDLS +Y GKY+T++ + VYTN L+GH Sbjct 1874 TTYYLDDVKKIEYNPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGH----- 1928 Query 1093 SDAISSSFNNLLGFDNSKP-VSKKLTYSFFPDFEGDVILTEYSTYDPIYKNGAMLHGKPI 1151 I N LGFD+SK V K+T +P GDV+L Y Y+ G + GKP+ Sbjct 1929 --TICDILNAKLGFDSSKEFVEYKVTE--WPTATGDVVLATDDLYVKRYERGCITFGKPV 1984 Query 1152 LWVNNSKFD-SALNKFNRATLRQVYDIAPVTLENKYTVLQDNQIQQVEVEAPKEDAKPQS 1210 +W+++ + ++L FNR L ENK+ VL+ + + DAK Sbjct 1985 IWLSHEQASLNSLTYFNRPLLVD---------ENKFDVLK-VDDVDDGGDISESDAKESK 2034 Query 1211 PVQVAEDIDNKLPIIKCKGLKKPF-VKDGYSFVNDPQGVNVIDTLGIDDLRALYVDRNLR 1269 + IIK G+KKPF V+D +D + + +L I D+ +++ R Sbjct 2035 EIN----------IIKLSGVKKPFKVEDSVIVNDDTSEIKYVKSLSIVDVYDMWL-TGCR 2083 Query 1270 LIVLKENNWSALFNIHTVEKGDLSVIAASGSITRRVKI-LLGASSLFAQFASVTVNVTTA 1328 +V N S N+ T+ K G + I LL + F NV A Sbjct 2084 YVVRTANALSMAVNVPTIRK-----FIKFGMTLVSIPIDLLNLREIKPVF-----NVVKA 2133 Query 1329 MGKALGRMTRNVITNTGIIGQGFALLKMLLILPFTFWK--SKNQSTVKVEVGALRTAGIV 1386 + RN I+ F +K L +L F + K + N+ EV + T +V Sbjct 2134 V--------RNKISAC------FNFIKWLFVLLFGWIKISADNKVIYTTEVASKLTCKLV 2179 Query 1387 TTNVVKQCASAAYDVLVVKFKRIDWKSTLRLLFLICTTGLLLSSLYYLFLFHQVLTSDVM 1446 + A+ + FK W R +I T LL ++ F++ V+ SD Sbjct 2180 ---------ALAFKNAFLTFK---WSVVARGACIIATIFLL----WFNFIYANVIFSDFY 2223 Query 1447 LDGAEGMLATY-----RELRSYLGIHSLCDGMVEAYRNVSYDVNDFCSNRSALCNWCLIG 1501 L G L T+ + ++S + ++CD + + ++V + N +C N S C +CL G Sbjct 2224 LPKI-GFLPTFVGKIAQWIKSTFSLVTICD--LYSIQDVGFK-NQYC-NGSIACQFCLAG 2278 Query 1502 QDSLTRYSAFQMIQTHV--TSYVINIDWVWFVMEFALAYVLYTSTFNVLLLVVSSQYFFS 1559 D L Y A ++Q ++V + V+E ++Y LYT+ F L ++S Q + Sbjct 2279 FDMLDNYKAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTT 2338 Query 1560 YTGAFVNWRSYNYLVSGYFFCVTHIPLLGLVRIYNFLACLWFLRRFYNHVINGCKDTACL 1619 + + ++ V +P +R Y +A L + HV GC CL Sbjct 2339 WLPELFMLSTLHWSVRLLVSLANMLPAHVFMRFYIIIASFIKLFILFRHVAYGCSKPGCL 2398 Query 1620 LCYKRNRLTRVEASTVVCGSKRTFYIVANGGTSFCCRHNWNCVDCDTAGIGNTFICEEVA 1679 CYKRNR RV+ ST+V G R + ++ANGGT FC +H WNC+DCD+ GNTFI E A Sbjct 2399 FCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAA 2458 Query 1680 NDLTTSLRRLVKPTDKSHYYVESVTVKDSVVQLHYSREGASCYERYPLCYFTNLDKLKFK 1739 DL+ L+R ++PTD +++ V V ++L Y R+G Y+ F + L Sbjct 2459 LDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHS 2518 Query 1740 EVCKTPTGIPEHNFLIYDSSDRGQENLARSACVYYSQVLSKPMLLVDSNMVTTVGDSREI 1799 +V G+P + ++ ++ D + N +A V+Y+Q L +P+L+VD N++TT + Sbjct 2519 KV----KGVPNMHVVVVEN-DADKANFLNAA-VFYAQSLFRPILMVDKNLITTANTGTSV 2572 Query 1800 ASKMLDSYVNSFISLFGVNRDKLDKLVATARDCVKRGDDFQTVIKTFTDAARGPAGVESD 1859 M D YV++F+S+F V++ L+ L+ATA +K+G V+ TF AR ++SD Sbjct 2573 TETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSD 2632 Query 1860 VETSSIVDALQYAYKHDLQLTTEGFNNYVPSYIKPDSVATADLGCLIDLNAASVNQTSIR 1919 V+T + D++ A L+LT E NN VP+Y+K D++ ADLG LI +A V + Sbjct 2633 VDTKCLADSVMSAVSAGLELTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAK 2692 Query 1920 NANGACIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLTTSRLRSADNILSVKFS 1973 A +CIW+ + +LS + +++ AC K + +LT ++ + ++L+ FS Sbjct 2693 IAGVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFS 2746 Range 2: 1276 to 1425 Score:107 bits(266), Expect:6e-23, Method:Compositional matrix adjust., Identities:63/150(42%), Positives:85/150(56%), Gaps:2/150(1%) Query 347 DVTLVFGDAIAVARATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDYVNFYGP 406 +V V GD I V++ + ++VN AN H+ HGGG+A AI A+G E+ D V G Sbjct 1276 NVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKSKGV 1335 Query 407 LNVGDSTLLKGHGLATGILHVVGPDAR--ANQDIQLLKRCYKAFNKYPLVVSPLISAGIF 464 GD + G L +L+VVGPDAR Q LL+R YK NKY VV+ LISAGIF Sbjct 1336 CATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISAGIF 1395 Query 465 CVEPRVSLEYLLSVVHTKTYVVVNSEKVYN 494 V VSL YLL + +V N+++ ++ Sbjct 1396 SVPSDVSLTYLLGTAEKQVVLVSNNQEDFD 1425 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Bovine respiratory coronavirus (strain 98TXSF-110-LUN)] Sequence ID: P0C6W8.1 Length: 7094 Range 1: 1483 to 2746 Score:480 bits(1236), Expect:8e-138, Method:Compositional matrix adjust., Identities:398/1372(29%), Positives:644/1372(46%), Gaps:127/1372(9%) Query 621 LNSDVAVQTPEQSFINT---VIANGGYHCWHLVTGELIVKGVSYRKLLNWSDQT-ICYAD 676 L D+A+ ++F+ + V+ G W +V + GV K IC D Sbjct 1483 LRHDIALDDDARTFVQSNVDVVPEG----WRVVNKFYQINGVRTVKYFECPGGIDICSQD 1538 Query 677 NKF-YVVKGQIALPFDSLEKCRTYLTSRAAQQKNVDVLVTIDGVNFRTVVLNNTTTYRVQ 735 F YV +G S K T +A VD+L+T+DGVNF + + Sbjct 1539 KVFGYVQQG-------SFNKA-TVAQIKALFLDKVDILLTVDGVNFTNRFVPVGENFGKS 1590 Query 736 LGSVFYKGSDISDTIPTEKMSGEAVYLADNLS-EAEKAVLSEVYGTADTAFLHRYYSLLA 794 LG+VF G +++ G+ + DNLS E KAV S D L YY++L Sbjct 1591 LGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRSSF--NFDQKELLAYYNMLV 1648 Query 795 LVKKWKYTVHDGVKSLKLNSNNCYVNVTMLMLDMLKEIKFIVPALQAAYLKHKGGDSTEF 854 KW+ + + K +NNC+VNV+ LML L +KF + Q A+L+ + G F Sbjct 1649 NCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSL-NLKFKIVQWQEAWLEFRSGRPARF 1707 Query 855 IALIMAYGDCTYGEPDDASRLLHTILSKAELTTQAKMVWRQWCNVCGVQDTTTTGLKACI 914 ++L++A G +G+P D+ L + S+ +LT A + C CGV+ TG+ A + Sbjct 1708 VSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTG-AICDFEIACK-CGVKQEQRTGVDAVM 1765 Query 915 YVGMNSLDELHATHEECCQCGDVRKRQLVEHNAPWLLLSGLNEAKVMTPTSQSAGPDYTA 974 + G S ++L + C CG + V + P+L+ S TP S + Sbjct 1766 HFGTLSREDLEIGYTVDCSCGK-KLIHCVRFDVPFLICSN-------TPASVKLPKGVGS 1817 Query 975 FNVFQGVETSVGHYLHVRVKDNLLYKYDSGSLSKTSDMKCKMTDVYYPKQ-RYSADCNVV 1033 N+F+G VGHY+HV+ + + YD+ ++ K +D+ ++D Y K + + + Sbjct 1818 ANIFKG--DKVGHYVHVKCEQSYQL-YDASNVKKVTDVTGNLSDCLYLKNLKQTFKSVLT 1874 Query 1034 VYSLDGNTWADVDPDLSAFYMKDGKYFTKKPVIEYSPATILSGSVYTNSCLVGHDGTIGS 1093 Y LD + PDLS +Y GKY+T++ + VYTN L+GH Sbjct 1875 TYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGH------ 1928 Query 1094 DAISSSFNNLLGFDNSKP-VSKKLTYSFFPDFEGDVILTEYSTYDPIYKNGAMLHGKPIL 1152 I N LGFD+SK V K+T +P GDV+L Y Y+ G + GKP++ Sbjct 1929 -TICDILNAKLGFDSSKEFVEYKVTE--WPTATGDVVLATDDLYVKRYERGCITFGKPVI 1985 Query 1153 WVNNSKFD-SALNKFNRATLRQVYDIAPVTLENKYTVLQDNQIQQVEVEAPKEDAKPQSP 1211 W+++ + ++L FNR L ENK+ VL+ + + DAK Sbjct 1986 WLSHEQASLNSLTYFNRPLLVD---------ENKFDVLK-VDDVDDGGDISESDAKESKE 2035 Query 1212 VQVAEDIDNKLPIIKCKGLKKPF-VKDGYSFVNDPQGVNVIDTLGIDDLRALYVDRNLRL 1270 + IIK G+KKPF V+D +D + + +L I D+ +++ R Sbjct 2036 IN----------IIKLSGVKKPFKVEDSVIVNDDTSEIKYVKSLSIVDVYDMWL-TGCRY 2084 Query 1271 IVLKENNWSALFNIHTVEKGDLSVIAASGSITRRVKILLGASSLFAQFASVTVNVTTAMG 1330 +V N+ S N+ T+ K I ++ LL + F NV A+ Sbjct 2085 VVRTANDLSMAVNVPTIRK----FIKFGMTLVSIPIDLLNLREIKPVF-----NVVKAV- 2134 Query 1331 KALGRMTRNVITNTGIIGQGFALLKMLLILPFTFWK--SKNQSTVKVEVGALRTAGIVTT 1388 RN I+ F +K L +L F + K + N+ EV + T +V Sbjct 2135 -------RNKISAC------FNFIKWLFVLLFGWIKISADNKVIYTTEVASKLTCKLV-- 2179 Query 1389 NVVKQCASAAYDVLVVKFKRIDWKSTLRLLFLICTTGLLLSSLYYLFLFHQVLTSDVMLD 1448 + A+ + FK W R +I T LL ++ F++ V+ SD L Sbjct 2180 -------ALAFKNAFLTFK---WSVVARGACIIATIFLL----WFNFIYANVIFSDFYLP 2225 Query 1449 GAEGMLATY-----RELRSYLGIHSLCDGMVEAYRNVSYDVNDFCSNRSALCNWCLIGQD 1503 G L T+ + ++S + ++CD + + ++V + N +C N S C +CL G D Sbjct 2226 KI-GFLPTFVGKIAQWIKSTFSLVTICD--LYSIQDVGFK-NQYC-NGSIACQFCLAGFD 2280 Query 1504 SLTRYSAFQMIQTHV--TSYVINIDWVWFVMEFALAYVLYTSTFNVLLLVVSSQYFFSYT 1561 L Y A ++Q ++V + V+E ++Y LYT+ F L ++S Q ++ Sbjct 2281 MLDNYKAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWL 2340 Query 1562 GAFVNWRSYNYLVSGYFFCVTHIPLLGLVRIYNFLACLWFLRRFYNHVINGCKDTACLLC 1621 + ++ V +P +R Y +A L + HV GC CL C Sbjct 2341 PELFMLSTLHWSVRLLVSLANMLPAHVFMRFYIIIASFIKLFSLFRHVAYGCSKPGCLFC 2400 Query 1622 YKRNRLTRVEASTVVCGSKRTFYIVANGGTSFCCRHNWNCVDCDTAGIGNTFICEEVAND 1681 YKRNR RV+ ST+V G R + ++ANGGT FC +H WNC+DCD+ GNTFI E A D Sbjct 2401 YKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALD 2460 Query 1682 LTTSLRRLVKPTDKSHYYVESVTVKDSVVQLHYSREGASCYERYPLCYFTNLDKLKFKEV 1741 L+ L+R ++PTD +++ V V ++L Y R+G Y+ F + L +V Sbjct 2461 LSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKV 2520 Query 1742 CKTPTGIPEHNFLIYDSSDRGQENLARSACVYYSQVLSKPMLLVDSNMVTTVGDSREIAS 1801 G+P + ++ ++ D + N +A V+Y+Q L +P+L+VD N++TT + Sbjct 2521 ----KGVPNMHVVVVEN-DADKANFLNAA-VFYAQSLFRPILMVDKNLITTANTGTSVTE 2574 Query 1802 KMLDSYVNSFISLFGVNRDKLDKLVATARDCVKRGDDFQTVIKTFTDAARGPAGVESDVE 1861 M D YV++F+S+F V++ L+ L+ATA +K+G V+ TF AR ++SDV+ Sbjct 2575 TMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVD 2634 Query 1862 TSSIVDALQYAYKHDLQLTTEGFNNYVPSYIKPDSVATADLGCLIDLNAASVNQTSIRNA 1921 T + D++ A L+LT E NN VP+Y+K D++ ADLG LI +A V + A Sbjct 2635 TKCLADSVMSAVSAGLELTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIA 2694 Query 1922 NGACIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLTTSRLRSADNILSVKFS 1973 +CIW+ + +LS + +++ AC K + +LT ++ + ++L+ FS Sbjct 2695 GVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFS 2746 Range 2: 1276 to 1425 Score:107 bits(266), Expect:7e-23, Method:Compositional matrix adjust., Identities:63/150(42%), Positives:85/150(56%), Gaps:2/150(1%) Query 347 DVTLVFGDAIAVARATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDYVNFYGP 406 +V V GD I V++ + ++VN AN H+ HGGG+A AI A+G E+ D V G Sbjct 1276 NVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKSKGV 1335 Query 407 LNVGDSTLLKGHGLATGILHVVGPDAR--ANQDIQLLKRCYKAFNKYPLVVSPLISAGIF 464 GD + G L +L+VVGPDAR Q LL+R YK NKY VV+ LISAGIF Sbjct 1336 CATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISAGIF 1395 Query 465 CVEPRVSLEYLLSVVHTKTYVVVNSEKVYN 494 V VSL YLL + +V N+++ ++ Sbjct 1396 SVPSDVSLTYLLGTAEKQVVLVSNNQEDFD 1425 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bovine enteric coronavirus (strain 98TXSF-110-ENT)] Sequence ID: P0C6W7.1 Length: 7094 Range 1: 1483 to 2746 Score:479 bits(1234), Expect:1e-137, Method:Compositional matrix adjust., Identities:398/1372(29%), Positives:645/1372(47%), Gaps:127/1372(9%) Query 621 LNSDVAVQTPEQSFINT---VIANGGYHCWHLVTGELIVKGVSYRKLLNWSDQT-ICYAD 676 L D+A+ ++F+ + V+ G W +V + GV K IC D Sbjct 1483 LRHDIALDDDARTFVQSNVDVVPEG----WRVVNKFYQINGVRTVKYFECPGGIDICSQD 1538 Query 677 NKF-YVVKGQIALPFDSLEKCRTYLTSRAAQQKNVDVLVTIDGVNFRTVVLNNTTTYRVQ 735 F YV +G S K T +A VD+L+T+DGVNF + ++ Sbjct 1539 KVFGYVQQG-------SFNKA-TVAQIKALFLDKVDILLTVDGVNFTNRFVPVGESFGKS 1590 Query 736 LGSVFYKGSDISDTIPTEKMSGEAVYLADNLS-EAEKAVLSEVYGTADTAFLHRYYSLLA 794 LG+VF G +++ G+ + DNLS E KAV S D L YY++L Sbjct 1591 LGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRSSF--NFDQKELLAYYNMLV 1648 Query 795 LVKKWKYTVHDGVKSLKLNSNNCYVNVTMLMLDMLKEIKFIVPALQAAYLKHKGGDSTEF 854 KW+ + + K +NNC+VNV+ LML L +KF + Q A+L+ + G F Sbjct 1649 NCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSL-NLKFKIVQWQEAWLEFRSGRPARF 1707 Query 855 IALIMAYGDCTYGEPDDASRLLHTILSKAELTTQAKMVWRQWCNVCGVQDTTTTGLKACI 914 ++L++A G +G+P D+ L + S+ +LT A + C CGV+ TG+ A + Sbjct 1708 VSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTG-AICDFEIACK-CGVKQEQRTGVDAVM 1765 Query 915 YVGMNSLDELHATHEECCQCGDVRKRQLVEHNAPWLLLSGLNEAKVMTPTSQSAGPDYTA 974 + G S ++L + C CG + V + P+L+ S TP S + Sbjct 1766 HFGTLSREDLEIGYTVDCSCGK-KLIHCVRFDVPFLICSN-------TPASVKLPKGVGS 1817 Query 975 FNVFQGVETSVGHYLHVRVKDNLLYKYDSGSLSKTSDMKCKMTDVYYPKQ-RYSADCNVV 1033 N+F+G VGHY+HV+ + + YD+ ++ K +D+ ++D Y K + + + Sbjct 1818 ANIFKG--DKVGHYVHVKCEQSYQL-YDASNVKKVTDVTGNLSDCLYLKNLKQTFKSVLT 1874 Query 1034 VYSLDGNTWADVDPDLSAFYMKDGKYFTKKPVIEYSPATILSGSVYTNSCLVGHDGTIGS 1093 Y LD + +PDLS +Y GKY+T++ + VYTN L+GH Sbjct 1875 TYYLDDVKKIEYNPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGH------ 1928 Query 1094 DAISSSFNNLLGFDNSKP-VSKKLTYSFFPDFEGDVILTEYSTYDPIYKNGAMLHGKPIL 1152 I N LGFD+SK V K+T +P GDV+L Y Y+ G + GKP++ Sbjct 1929 -TICDILNAKLGFDSSKEFVEYKVTE--WPTATGDVVLATDDLYVKRYERGCITFGKPVI 1985 Query 1153 WVNNSKFD-SALNKFNRATLRQVYDIAPVTLENKYTVLQDNQIQQVEVEAPKEDAKPQSP 1211 W+++ + ++L FNR L ENK+ VL+ + + DAK Sbjct 1986 WLSHEQASLNSLTYFNRPLLVD---------ENKFDVLK-VDDVDDGGDISESDAKESKE 2035 Query 1212 VQVAEDIDNKLPIIKCKGLKKPF-VKDGYSFVNDPQGVNVIDTLGIDDLRALYVDRNLRL 1270 + IIK G+KKPF V+D +D + + +L I D+ +++ R Sbjct 2036 IN----------IIKLSGVKKPFKVEDSVIVNDDTSEIKYVKSLSIVDVYDMWL-TGCRY 2084 Query 1271 IVLKENNWSALFNIHTVEKGDLSVIAASGSITRRVKILLGASSLFAQFASVTVNVTTAMG 1330 +V N S N+ T+ K I ++ LL + F NV A+ Sbjct 2085 VVRTANALSMAVNVPTIRK----FIKFGMTLVSIPIDLLNLREIKPVF-----NVVKAV- 2134 Query 1331 KALGRMTRNVITNTGIIGQGFALLKMLLILPFTFWK--SKNQSTVKVEVGALRTAGIVTT 1388 RN I+ F +K L +L F + K + N+ EV + T +V Sbjct 2135 -------RNKISAC------FNFIKWLFVLLFGWIKISADNKVIYTTEVASKLTCKLV-- 2179 Query 1389 NVVKQCASAAYDVLVVKFKRIDWKSTLRLLFLICTTGLLLSSLYYLFLFHQVLTSDVMLD 1448 + A+ + FK W R +I T LL ++ F++ V+ SD L Sbjct 2180 -------ALAFKNAFLTFK---WSVVARGACIIATIFLL----WFNFIYANVIFSDFYLP 2225 Query 1449 GAEGMLATY-----RELRSYLGIHSLCDGMVEAYRNVSYDVNDFCSNRSALCNWCLIGQD 1503 G L T+ + ++S + ++CD + + ++V + N +C N S C +CL G D Sbjct 2226 KI-GFLPTFVGKIAQWIKSTFSLVTICD--LYSIQDVGFK-NQYC-NGSIACQFCLAGFD 2280 Query 1504 SLTRYSAFQMIQTHV--TSYVINIDWVWFVMEFALAYVLYTSTFNVLLLVVSSQYFFSYT 1561 L Y A ++Q ++V + V+E ++Y LYT+ F L ++S Q ++ Sbjct 2281 MLDNYKAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWL 2340 Query 1562 GAFVNWRSYNYLVSGYFFCVTHIPLLGLVRIYNFLACLWFLRRFYNHVINGCKDTACLLC 1621 + ++ V +P +R Y +A L + HV GC CL C Sbjct 2341 PELFMLSTLHWSVRLLVSLANMLPAHVFMRFYIIIASFIKLFILFRHVAYGCSKPGCLFC 2400 Query 1622 YKRNRLTRVEASTVVCGSKRTFYIVANGGTSFCCRHNWNCVDCDTAGIGNTFICEEVAND 1681 YKRNR RV+ ST+V G R + ++ANGGT FC +H WNC+DCD+ GNTFI E A D Sbjct 2401 YKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALD 2460 Query 1682 LTTSLRRLVKPTDKSHYYVESVTVKDSVVQLHYSREGASCYERYPLCYFTNLDKLKFKEV 1741 L+ L+R ++PTD +++ V V ++L Y R+G Y+ F + L +V Sbjct 2461 LSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKV 2520 Query 1742 CKTPTGIPEHNFLIYDSSDRGQENLARSACVYYSQVLSKPMLLVDSNMVTTVGDSREIAS 1801 G+P + ++ ++ D + N +A V+Y+Q L +P+L+VD N++TT + Sbjct 2521 ----KGVPNMHVVVVEN-DADKANFLNAA-VFYAQSLFRPILMVDKNLITTANTGTSVTE 2574 Query 1802 KMLDSYVNSFISLFGVNRDKLDKLVATARDCVKRGDDFQTVIKTFTDAARGPAGVESDVE 1861 M D YV++F+S+F V++ L+ L+ATA +K+G V+ TF AR ++SDV+ Sbjct 2575 TMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVD 2634 Query 1862 TSSIVDALQYAYKHDLQLTTEGFNNYVPSYIKPDSVATADLGCLIDLNAASVNQTSIRNA 1921 T + D++ A L+LT E NN VP+Y+K D++ ADLG LI +A V + A Sbjct 2635 TKCLADSVMSAVSAGLELTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIA 2694 Query 1922 NGACIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLTTSRLRSADNILSVKFS 1973 +CIW+ + +LS + +++ AC K + +LT ++ + ++L+ FS Sbjct 2695 GVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFS 2746 Range 2: 1276 to 1425 Score:107 bits(266), Expect:7e-23, Method:Compositional matrix adjust., Identities:63/150(42%), Positives:85/150(56%), Gaps:2/150(1%) Query 347 DVTLVFGDAIAVARATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDYVNFYGP 406 +V V GD I V++ + ++VN AN H+ HGGG+A AI A+G E+ D V G Sbjct 1276 NVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKSKGV 1335 Query 407 LNVGDSTLLKGHGLATGILHVVGPDAR--ANQDIQLLKRCYKAFNKYPLVVSPLISAGIF 464 GD + G L +L+VVGPDAR Q LL+R YK NKY VV+ LISAGIF Sbjct 1336 CATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISAGIF 1395 Query 465 CVEPRVSLEYLLSVVHTKTYVVVNSEKVYN 494 V VSL YLL + +V N+++ ++ Sbjct 1396 SVPSDVSLTYLLGTAEKQVVLVSNNQEDFD 1425 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bovine coronavirus Mebus] Sequence ID: P0C6U0.1 Length: 4383 Range 1: 1483 to 2746 Score:478 bits(1229), Expect:4e-137, Method:Compositional matrix adjust., Identities:395/1374(29%), Positives:646/1374(47%), Gaps:131/1374(9%) Query 621 LNSDVAVQTPEQSFINT---VIANGGYHCWHLVTGELIVKGVSYRKLLNWSDQT-ICYAD 676 L D+A+ ++F+ + V+ G W +V + GV K IC D Sbjct 1483 LRHDIALDDDARTFVQSNVDVVPEG----WRVVNKFYQINGVRTVKYFECPGGIDICSQD 1538 Query 677 NKF-YVVKGQIALPFDSLEKCRTYLTSRAAQQKNVDVLVTIDGVNFRTVVLNNTTTYRVQ 735 F YV +G S K T +A VD+L+T+DGVNF + ++ Sbjct 1539 KVFGYVQQG-------SFNK-ATVAQIKALFLDKVDILLTVDGVNFTNRFVPVGESFGKS 1590 Query 736 LGSVFYKGSDISDTIPTEKMSGEAVYLADNLS-EAEKAVLSEVYGTADTAFLHRYYSLLA 794 LG+VF G +++ G+ + DNLS E KAV S D L YY++L Sbjct 1591 LGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRSSF--NFDQKELLAYYNMLV 1648 Query 795 LVKKWKYTVHDGVKSLKLNSNNCYVNVTMLMLDMLKEIKFIVPALQAAYLKHKGGDSTEF 854 KW+ + + K +NNC+VNV+ LML L +KF + Q A+L+ + G F Sbjct 1649 NCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSL-NLKFKIVQWQEAWLEFRSGRPARF 1707 Query 855 IALIMAYGDCTYGEPDDASRLLHTILSKAELTTQAKMVWRQWCNVCGVQDTTTTGLKACI 914 ++L++A G +G+P D+ L + S+ +LT A + C CGV+ TG+ A + Sbjct 1708 VSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTG-AICDFEIACK-CGVKQEQRTGVDAVM 1765 Query 915 YVGMNSLDELHATHEECCQCGDVRKRQLVEHNAPWLLLSGLNEAKVMTPTSQSAGPDYTA 974 + G S ++L + C CG + V + P+L+ S TP S + Sbjct 1766 HFGTLSREDLEIGYTVDCSCGK-KLIHCVRFDVPFLICSN-------TPASVKLPKGVGS 1817 Query 975 FNVFQGVETSVGHYLHVRVKDNLLYK-YDSGSLSKTSDMKCKMTDVYYPKQ-RYSADCNV 1032 N+F+G VGHY+HV+ + + Y+ YD+ ++ K +D+ ++D Y K + + + Sbjct 1818 ANIFKG--DKVGHYVHVKCEQS--YQLYDASNVKKVTDVTGNLSDCLYLKNLKQTFKSVL 1873 Query 1033 VVYSLDGNTWADVDPDLSAFYMKDGKYFTKKPVIEYSPATILSGSVYTNSCLVGHDGTIG 1092 Y LD + PDLS +Y GKY+T++ + VYTN L+GH Sbjct 1874 TTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGH----- 1928 Query 1093 SDAISSSFNNLLGFDNSKP-VSKKLTYSFFPDFEGDVILTEYSTYDPIYKNGAMLHGKPI 1151 + N LGFD+SK V K+T +P GDV+L Y Y+ G + GKP+ Sbjct 1929 --TVCDILNAKLGFDSSKEFVEYKVTE--WPTATGDVVLATDDLYVKRYERGCITFGKPV 1984 Query 1152 LWVNNSKFD-SALNKFNRATLRQVYDIAPVTLENKYTVLQDNQIQQVEVEAPKEDAKPQS 1210 +W+++ + ++L FNR L ENK+ VL+ + + + + +P+ Sbjct 1985 IWLSHEQASLNSLTYFNRPLLVD---------ENKFDVLKVDDVDDGGDISESDAKEPK- 2034 Query 1211 PVQVAEDIDNKLPIIKCKGLKKPF-VKDGYSFVNDPQGVNVIDTLGIDDLRALYVDRNLR 1269 ++ IIK G+KKPF V+D +D + + +L I D+ +++ R Sbjct 2035 ----------EINIIKLSGVKKPFKVEDSVIVNDDTSEIKYVKSLSIVDVYDMWL-TGCR 2083 Query 1270 LIVLKENNWSALFNIHTVEKGDLSVIAASGSITRRVKI-LLGASSLFAQFASVTVNVTTA 1328 +V N S N+ T+ K G + I LL + F NV A Sbjct 2084 CVVRTANALSRAVNVPTIRK-----FIKFGMTLVSIPIDLLNLREIKPVF-----NVVKA 2133 Query 1329 MGKALGRMTRNVITNTGIIGQGFALLKMLLILPFTFWK--SKNQSTVKVEVGALRTAGIV 1386 + RN I+ F +K L +L F + K + N+ EV + T +V Sbjct 2134 V--------RNKISAC------FNFIKWLFVLLFGWIKISADNKVIYTTEVASKLTCKLV 2179 Query 1387 TTNVVKQCASAAYDVLVVKFKRIDWKSTLRLLFLICTTGLLLSSLYYLFLFHQVLTSDVM 1446 + A+ + FK W R +I T LL ++ F++ V+ SD Sbjct 2180 ---------ALAFKNAFLTFK---WSVVARGACIIATIFLL----WFNFIYANVIFSDFY 2223 Query 1447 LDGAEGMLATY-----RELRSYLGIHSLCDGMVEAYRNVSYDVNDFCSNRSALCNWCLIG 1501 L G L T+ + +++ + ++CD + + ++V + N +C N S C +CL G Sbjct 2224 LPKI-GFLPTFVGKIAQWIKNTFSLVTICD--LYSIQDVGFK-NQYC-NGSIACQFCLAG 2278 Query 1502 QDSLTRYSAFQMIQTHV--TSYVINIDWVWFVMEFALAYVLYTSTFNVLLLVVSSQYFFS 1559 D L Y A ++Q ++V + V+E ++Y LYT+ F L ++S Q + Sbjct 2279 FDMLDNYKAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTT 2338 Query 1560 YTGAFVNWRSYNYLVSGYFFCVTHIPLLGLVRIYNFLACLWFLRRFYNHVINGCKDTACL 1619 + + ++ V +P +R Y +A L + HV GC + CL Sbjct 2339 WLPELFMLSTLHWSVRLLVSLANMLPAHVFMRFYIIIASFIKLFSLFRHVAYGCSKSGCL 2398 Query 1620 LCYKRNRLTRVEASTVVCGSKRTFYIVANGGTSFCCRHNWNCVDCDTAGIGNTFICEEVA 1679 CYKRNR RV+ ST+V G R + +ANGGT FC +H WNC+DCD+ GNTFI E A Sbjct 2399 FCYKRNRSLRVKCSTIVGGMIRYYDAMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAA 2458 Query 1680 NDLTTSLRRLVKPTDKSHYYVESVTVKDSVVQLHYSREGASCYERYPLCYFTNLDKLKFK 1739 DL+ L+R ++PTD +++ V V ++L Y R+G Y+ F + L Sbjct 2459 LDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFYDRDGQRTYDDVNASLFVDYSNLLHS 2518 Query 1740 EVCKTPTGIPEHNFLIYDSSDRGQENLARSACVYYSQVLSKPMLLVDSNMVTTVGDSREI 1799 +V P H ++ + +D+ +A V+Y+Q L +P+L+VD N++TT + Sbjct 2519 KVKSVPN---MHVVVVENDADKAN---FLNAAVFYAQSLFRPILMVDKNLITTANTGTSV 2572 Query 1800 ASKMLDSYVNSFISLFGVNRDKLDKLVATARDCVKRGDDFQTVIKTFTDAARGPAGVESD 1859 M D YV++F+S+F V++ L+ L+ATA +K+G V+ TF AR ++SD Sbjct 2573 TETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSD 2632 Query 1860 VETSSIVDALQYAYKHDLQLTTEGFNNYVPSYIKPDSVATADLGCLIDLNAASVNQTSIR 1919 V+T + D++ A L+LT E NN VP+Y+K D++ ADLG LI +A V + Sbjct 2633 VDTKCLADSVMSAVSAGLELTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAK 2692 Query 1920 NANGACIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLTTSRLRSADNILSVKFS 1973 A +CIW+ + +LS + +++ AC K + +LT ++ + ++L+ FS Sbjct 2693 IAGVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFS 2746 Range 2: 1276 to 1425 Score:107 bits(266), Expect:7e-23, Method:Compositional matrix adjust., Identities:63/150(42%), Positives:85/150(56%), Gaps:2/150(1%) Query 347 DVTLVFGDAIAVARATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDYVNFYGP 406 +V V GD I V++ + ++VN AN H+ HGGG+A AI A+G E+ D V G Sbjct 1276 NVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKSKGV 1335 Query 407 LNVGDSTLLKGHGLATGILHVVGPDAR--ANQDIQLLKRCYKAFNKYPLVVSPLISAGIF 464 GD + G L +L+VVGPDAR Q LL+R YK NKY VV+ LISAGIF Sbjct 1336 CATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISAGIF 1395 Query 465 CVEPRVSLEYLLSVVHTKTYVVVNSEKVYN 494 V VSL YLL + +V N+++ ++ Sbjct 1396 SVPSDVSLTYLLGTAKKQVVLVSNNQEDFD 1425 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Bovine coronavirus Mebus] Sequence ID: P0C6W9.1 Length: 7094 Range 1: 1483 to 2746 Score:476 bits(1226), Expect:1e-136, Method:Compositional matrix adjust., Identities:393/1372(29%), Positives:644/1372(46%), Gaps:127/1372(9%) Query 621 LNSDVAVQTPEQSFINT---VIANGGYHCWHLVTGELIVKGVSYRKLLNWSDQT-ICYAD 676 L D+A+ ++F+ + V+ G W +V + GV K IC D Sbjct 1483 LRHDIALDDDARTFVQSNVDVVPEG----WRVVNKFYQINGVRTVKYFECPGGIDICSQD 1538 Query 677 NKF-YVVKGQIALPFDSLEKCRTYLTSRAAQQKNVDVLVTIDGVNFRTVVLNNTTTYRVQ 735 F YV +G S K T +A VD+L+T+DGVNF + ++ Sbjct 1539 KVFGYVQQG-------SFNKA-TVAQIKALFLDKVDILLTVDGVNFTNRFVPVGESFGKS 1590 Query 736 LGSVFYKGSDISDTIPTEKMSGEAVYLADNLS-EAEKAVLSEVYGTADTAFLHRYYSLLA 794 LG+VF G +++ G+ + DNLS E KAV S D L YY++L Sbjct 1591 LGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRSSF--NFDQKELLAYYNMLV 1648 Query 795 LVKKWKYTVHDGVKSLKLNSNNCYVNVTMLMLDMLKEIKFIVPALQAAYLKHKGGDSTEF 854 KW+ + + K +NNC+VNV+ LML L +KF + Q A+L+ + G F Sbjct 1649 NCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSL-NLKFKIVQWQEAWLEFRSGRPARF 1707 Query 855 IALIMAYGDCTYGEPDDASRLLHTILSKAELTTQAKMVWRQWCNVCGVQDTTTTGLKACI 914 ++L++A G +G+P D+ L + S+ +LT A + C CGV+ TG+ A + Sbjct 1708 VSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTG-AICDFEIACK-CGVKQEQRTGVDAVM 1765 Query 915 YVGMNSLDELHATHEECCQCGDVRKRQLVEHNAPWLLLSGLNEAKVMTPTSQSAGPDYTA 974 + G S ++L + C CG + V + P+L+ S TP S + Sbjct 1766 HFGTLSREDLEIGYTVDCSCGK-KLIHCVRFDVPFLICSN-------TPASVKLPKGVGS 1817 Query 975 FNVFQGVETSVGHYLHVRVKDNLLYKYDSGSLSKTSDMKCKMTDVYYPKQ-RYSADCNVV 1033 N+F+G VGHY+HV+ + + YD+ ++ K +D+ ++D Y K + + + Sbjct 1818 ANIFKG--DKVGHYVHVKCEQSYQL-YDASNVKKVTDVTGNLSDCLYLKNLKQTFKSVLT 1874 Query 1034 VYSLDGNTWADVDPDLSAFYMKDGKYFTKKPVIEYSPATILSGSVYTNSCLVGHDGTIGS 1093 Y LD + PDLS +Y GKY+T++ + VYTN L+GH Sbjct 1875 TYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGH------ 1928 Query 1094 DAISSSFNNLLGFDNSKP-VSKKLTYSFFPDFEGDVILTEYSTYDPIYKNGAMLHGKPIL 1152 + N LGFD+SK V K+T +P GDV+L Y Y+ G + GKP++ Sbjct 1929 -TVCDILNAKLGFDSSKEFVEYKVTE--WPTATGDVVLATDDLYVKRYERGCITFGKPVI 1985 Query 1153 WVNNSKFD-SALNKFNRATLRQVYDIAPVTLENKYTVLQDNQIQQVEVEAPKEDAKPQSP 1211 W+++ + ++L FNR L ENK+ VL+ + + + + +P+ Sbjct 1986 WLSHEQASLNSLTYFNRPLLVD---------ENKFDVLKVDDVDDGGDISESDAKEPK-- 2034 Query 1212 VQVAEDIDNKLPIIKCKGLKKPF-VKDGYSFVNDPQGVNVIDTLGIDDLRALYVDRNLRL 1270 ++ IIK G+KKPF V+D +D + + +L I D+ +++ R Sbjct 2035 ---------EINIIKLSGVKKPFKVEDSVIVNDDTSEIKYVKSLSIVDVYDMWL-TGCRC 2084 Query 1271 IVLKENNWSALFNIHTVEKGDLSVIAASGSITRRVKILLGASSLFAQFASVTVNVTTAMG 1330 +V N S N+ T+ K I ++ LL + F NV A+ Sbjct 2085 VVRTANALSRAVNVPTIRK----FIKFGMTLVSIPIDLLNLREIKPVF-----NVVKAV- 2134 Query 1331 KALGRMTRNVITNTGIIGQGFALLKMLLILPFTFWK--SKNQSTVKVEVGALRTAGIVTT 1388 RN I+ F +K L +L F + K + N+ EV + T +V Sbjct 2135 -------RNKISAC------FNFIKWLFVLLFGWIKISADNKVIYTTEVASKLTCKLV-- 2179 Query 1389 NVVKQCASAAYDVLVVKFKRIDWKSTLRLLFLICTTGLLLSSLYYLFLFHQVLTSDVMLD 1448 + A+ + FK W R +I T LL ++ F++ V+ SD L Sbjct 2180 -------ALAFKNAFLTFK---WSVVARGACIIATIFLL----WFNFIYANVIFSDFYLP 2225 Query 1449 GAEGMLATY-----RELRSYLGIHSLCDGMVEAYRNVSYDVNDFCSNRSALCNWCLIGQD 1503 G L T+ + +++ + ++CD + + ++V + N +C N S C +CL G D Sbjct 2226 KI-GFLPTFVGKIAQWIKNTFSLVTICD--LYSIQDVGFK-NQYC-NGSIACQFCLAGFD 2280 Query 1504 SLTRYSAFQMIQTHV--TSYVINIDWVWFVMEFALAYVLYTSTFNVLLLVVSSQYFFSYT 1561 L Y A ++Q ++V + V+E ++Y LYT+ F L ++S Q ++ Sbjct 2281 MLDNYKAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWL 2340 Query 1562 GAFVNWRSYNYLVSGYFFCVTHIPLLGLVRIYNFLACLWFLRRFYNHVINGCKDTACLLC 1621 + ++ V +P +R Y +A L + HV GC + CL C Sbjct 2341 PELFMLSTLHWSVRLLVSLANMLPAHVFMRFYIIIASFIKLFSLFRHVAYGCSKSGCLFC 2400 Query 1622 YKRNRLTRVEASTVVCGSKRTFYIVANGGTSFCCRHNWNCVDCDTAGIGNTFICEEVAND 1681 YKRNR RV+ ST+V G R + +ANGGT FC +H WNC+DCD+ GNTFI E A D Sbjct 2401 YKRNRSLRVKCSTIVGGMIRYYDAMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALD 2460 Query 1682 LTTSLRRLVKPTDKSHYYVESVTVKDSVVQLHYSREGASCYERYPLCYFTNLDKLKFKEV 1741 L+ L+R ++PTD +++ V V ++L Y R+G Y+ F + L +V Sbjct 2461 LSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFYDRDGQRTYDDVNASLFVDYSNLLHSKV 2520 Query 1742 CKTPTGIPEHNFLIYDSSDRGQENLARSACVYYSQVLSKPMLLVDSNMVTTVGDSREIAS 1801 P H ++ + +D+ +A V+Y+Q L +P+L+VD N++TT + Sbjct 2521 KSVPN---MHVVVVENDADKAN---FLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTE 2574 Query 1802 KMLDSYVNSFISLFGVNRDKLDKLVATARDCVKRGDDFQTVIKTFTDAARGPAGVESDVE 1861 M D YV++F+S+F V++ L+ L+ATA +K+G V+ TF AR ++SDV+ Sbjct 2575 TMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVD 2634 Query 1862 TSSIVDALQYAYKHDLQLTTEGFNNYVPSYIKPDSVATADLGCLIDLNAASVNQTSIRNA 1921 T + D++ A L+LT E NN VP+Y+K D++ ADLG LI +A V + A Sbjct 2635 TKCLADSVMSAVSAGLELTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIA 2694 Query 1922 NGACIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLTTSRLRSADNILSVKFS 1973 +CIW+ + +LS + +++ AC K + +LT ++ + ++L+ FS Sbjct 2695 GVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFS 2746 Range 2: 1276 to 1425 Score:106 bits(265), Expect:8e-23, Method:Compositional matrix adjust., Identities:63/150(42%), Positives:85/150(56%), Gaps:2/150(1%) Query 347 DVTLVFGDAIAVARATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDYVNFYGP 406 +V V GD I V++ + ++VN AN H+ HGGG+A AI A+G E+ D V G Sbjct 1276 NVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKSKGV 1335 Query 407 LNVGDSTLLKGHGLATGILHVVGPDAR--ANQDIQLLKRCYKAFNKYPLVVSPLISAGIF 464 GD + G L +L+VVGPDAR Q LL+R YK NKY VV+ LISAGIF Sbjct 1336 CATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISAGIF 1395 Query 465 CVEPRVSLEYLLSVVHTKTYVVVNSEKVYN 494 V VSL YLL + +V N+++ ++ Sbjct 1396 SVPSDVSLTYLLGTAKKQVVLVSNNQEDFD 1425 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bovine coronavirus strain Quebec] Sequence ID: P0C6U1.1 Length: 4383 Range 1: 1483 to 2746 Score:474 bits(1221), Expect:4e-136, Method:Compositional matrix adjust., Identities:394/1374(29%), Positives:646/1374(47%), Gaps:131/1374(9%) Query 621 LNSDVAVQTPEQSFINT---VIANGGYHCWHLVTGELIVKGVSYRKLLNWSDQT-ICYAD 676 L D+A+ ++F+ + V+ G W +V + GV K IC D Sbjct 1483 LRHDIALDDDARTFVQSNVDVVPEG----WRVVNKFYQINGVRPVKYFECPGGIDICSQD 1538 Query 677 NKF-YVVKGQIALPFDSLEKCRTYLTSRAAQQKNVDVLVTIDGVNFRTVVLNNTTTYRVQ 735 F YV +G S K T +A VD+L+T+DGVNF + ++ Sbjct 1539 KVFGYVQQG-------SFNK-ATVAQIKALFLDKVDILLTVDGVNFTNRFVPVGESFGKS 1590 Query 736 LGSVFYKGSDISDTIPTEKMSGEAVYLADNLS-EAEKAVLSEVYGTADTAFLHRYYSLLA 794 LG+VF G +++ G+ + DNLS E KAV S D L YY++L Sbjct 1591 LGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRSSF--NFDQKELLAYYNMLV 1648 Query 795 LVKKWKYTVHDGVKSLKLNSNNCYVNVTMLMLDMLKEIKFIVPALQAAYLKHKGGDSTEF 854 KW+ + + K +NNC+VNV+ LML L +KF + Q A+L+ + G F Sbjct 1649 NCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSL-NLKFKIVQWQEAWLEFRSGRPARF 1707 Query 855 IALIMAYGDCTYGEPDDASRLLHTILSKAELTTQAKMVWRQWCNVCGVQDTTTTGLKACI 914 ++L++A G +G+P D+ L + S+ +LT A + C CGV+ TG+ A + Sbjct 1708 VSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTG-AICDFEIACK-CGVKQEQRTGVDAVM 1765 Query 915 YVGMNSLDELHATHEECCQCGDVRKRQLVEHNAPWLLLSGLNEAKVMTPTSQSAGPDYTA 974 + G S ++L + C CG + V + P+L+ S TP S + Sbjct 1766 HFGTLSREDLEIGYTVDCSCGK-KLIHCVRFDVPFLICSN-------TPASVKLPKGVGS 1817 Query 975 FNVFQGVETSVGHYLHVRVKDNLLYK-YDSGSLSKTSDMKCKMTDVYYPKQ-RYSADCNV 1032 N+F+G VGHY+HV+ + + Y+ YD+ ++ K +D+ ++D Y K + + + Sbjct 1818 ANIFKG--DKVGHYVHVKCEQS--YQLYDASNVKKVTDVTGNLSDCLYLKNLKQTFKSVL 1873 Query 1033 VVYSLDGNTWADVDPDLSAFYMKDGKYFTKKPVIEYSPATILSGSVYTNSCLVGHDGTIG 1092 Y LD + PDLS +Y GKY+T++ + VYTN L+GH Sbjct 1874 TTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGH----- 1928 Query 1093 SDAISSSFNNLLGFDNSKP-VSKKLTYSFFPDFEGDVILTEYSTYDPIYKNGAMLHGKPI 1151 + N LGFD+SK V K+T +P GDV+L Y Y+ G + GKP+ Sbjct 1929 --TVCDILNAKLGFDSSKEFVEYKVTE--WPTATGDVVLATDDLYVKRYERGCITFGKPV 1984 Query 1152 LWVNNSKFD-SALNKFNRATLRQVYDIAPVTLENKYTVLQDNQIQQVEVEAPKEDAKPQS 1210 +W+++ + ++L FNR L ENK+ VL+ + + + + +P+ Sbjct 1985 IWLSHEQASLNSLTYFNRPLLVD---------ENKFDVLKVDDVDDGGDISESDAKEPK- 2034 Query 1211 PVQVAEDIDNKLPIIKCKGLKKPF-VKDGYSFVNDPQGVNVIDTLGIDDLRALYVDRNLR 1269 ++ IIK G+KKPF V+D +D + + +L I D+ +++ R Sbjct 2035 ----------EINIIKLSGVKKPFKVEDSVIVNDDTSEIKYVKSLSIVDVYDMWL-TGCR 2083 Query 1270 LIVLKENNWSALFNIHTVEKGDLSVIAASGSITRRVKI-LLGASSLFAQFASVTVNVTTA 1328 +V N S N+ T+ K G + I LL + F NV A Sbjct 2084 CVVRTANALSRAVNVPTIRK-----FIKFGMTLVSIPIDLLNLREIKPVF-----NVVKA 2133 Query 1329 MGKALGRMTRNVITNTGIIGQGFALLKMLLILPFTFWK--SKNQSTVKVEVGALRTAGIV 1386 + RN I+ F +K L +L F + K + N+ EV + T +V Sbjct 2134 V--------RNKISAC------FNFIKWLFVLLFGWIKISADNKVIYTTEVASKLTCKLV 2179 Query 1387 TTNVVKQCASAAYDVLVVKFKRIDWKSTLRLLFLICTTGLLLSSLYYLFLFHQVLTSDVM 1446 + A+ + FK W R +I T LL ++ F++ V+ SD Sbjct 2180 ---------ALAFKNAFLTFK---WSVVARGACIIATIFLL----WFNFIYANVIFSDFY 2223 Query 1447 LDGAEGMLATY-----RELRSYLGIHSLCDGMVEAYRNVSYDVNDFCSNRSALCNWCLIG 1501 L G L T+ + +++ + ++CD + + ++V + N +C N S C +CL G Sbjct 2224 LPKI-GFLPTFVGKIVQWIKNTFSLVTICD--LYSIQDVGFK-NQYC-NGSIACQFCLAG 2278 Query 1502 QDSLTRYSAFQMIQTHV--TSYVINIDWVWFVMEFALAYVLYTSTFNVLLLVVSSQYFFS 1559 D L Y A ++Q ++V + V+E ++Y LYT+ F L ++S Q + Sbjct 2279 FDMLDNYKAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTT 2338 Query 1560 YTGAFVNWRSYNYLVSGYFFCVTHIPLLGLVRIYNFLACLWFLRRFYNHVINGCKDTACL 1619 + + + ++ V +P +R Y +A L + HV GC + CL Sbjct 2339 WLPELLMLSTLHWSVRLLVSLANMLPAHVFMRFYIIIASFIKLFSLFRHVAYGCSKSGCL 2398 Query 1620 LCYKRNRLTRVEASTVVCGSKRTFYIVANGGTSFCCRHNWNCVDCDTAGIGNTFICEEVA 1679 CYKRNR RV+ ST+V G R + ++ANGGT FC +H WNC+DCD+ GNTFI E A Sbjct 2399 FCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAA 2458 Query 1680 NDLTTSLRRLVKPTDKSHYYVESVTVKDSVVQLHYSREGASCYERYPLCYFTNLDKLKFK 1739 DL+ L+R ++PTD +++ V V ++L Y R+G Y+ F + L Sbjct 2459 LDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFYDRDGQRTYDDVNASLFVDYSNLLHS 2518 Query 1740 EVCKTPTGIPEHNFLIYDSSDRGQENLARSACVYYSQVLSKPMLLVDSNMVTTVGDSREI 1799 +V P H ++ + +D+ +A V+Y+Q L +P+L+VD ++TT + Sbjct 2519 KVKSVPN---MHVVVVENDADKAN---FLNAAVFYAQSLFRPILMVDKILITTANTGTSV 2572 Query 1800 ASKMLDSYVNSFISLFGVNRDKLDKLVATARDCVKRGDDFQTVIKTFTDAARGPAGVESD 1859 M D YV++F+S+F V++ L+ L+ATA +K+G V+ TF AR ++SD Sbjct 2573 TETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSD 2632 Query 1860 VETSSIVDALQYAYKHDLQLTTEGFNNYVPSYIKPDSVATADLGCLIDLNAASVNQTSIR 1919 V+T + D++ A L+LT E NN VP+Y+K D++ ADLG LI +A V + Sbjct 2633 VDTKCLADSVMSAVSAGLELTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAK 2692 Query 1920 NANGACIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLTTSRLRSADNILSVKFS 1973 A +CIW+ + +LS + +++ AC K + LT ++ + ++L+ FS Sbjct 2693 IAGVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLELTYNKQMANVSVLTTPFS 2746 Range 2: 1276 to 1425 Score:106 bits(265), Expect:7e-23, Method:Compositional matrix adjust., Identities:63/150(42%), Positives:85/150(56%), Gaps:2/150(1%) Query 347 DVTLVFGDAIAVARATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDYVNFYGP 406 +V V GD I V++ + ++VN AN H+ HGGG+A AI A+G E+ D V G Sbjct 1276 NVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKSKGV 1335 Query 407 LNVGDSTLLKGHGLATGILHVVGPDAR--ANQDIQLLKRCYKAFNKYPLVVSPLISAGIF 464 GD + G L +L+VVGPDAR Q LL+R YK NKY VV+ LISAGIF Sbjct 1336 CATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISAGIF 1395 Query 465 CVEPRVSLEYLLSVVHTKTYVVVNSEKVYN 494 V VSL YLL + +V N+++ ++ Sbjct 1396 SVPSDVSLTYLLGTAKKQVVLVSNNQEDFD 1425 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Bovine coronavirus strain Quebec] Sequence ID: P0C6X0.1 Length: 7059 Range 1: 1483 to 2746 Score:473 bits(1218), Expect:1e-135, Method:Compositional matrix adjust., Identities:392/1372(29%), Positives:644/1372(46%), Gaps:127/1372(9%) Query 621 LNSDVAVQTPEQSFINT---VIANGGYHCWHLVTGELIVKGVSYRKLLNWSDQT-ICYAD 676 L D+A+ ++F+ + V+ G W +V + GV K IC D Sbjct 1483 LRHDIALDDDARTFVQSNVDVVPEG----WRVVNKFYQINGVRPVKYFECPGGIDICSQD 1538 Query 677 NKF-YVVKGQIALPFDSLEKCRTYLTSRAAQQKNVDVLVTIDGVNFRTVVLNNTTTYRVQ 735 F YV +G S K T +A VD+L+T+DGVNF + ++ Sbjct 1539 KVFGYVQQG-------SFNK-ATVAQIKALFLDKVDILLTVDGVNFTNRFVPVGESFGKS 1590 Query 736 LGSVFYKGSDISDTIPTEKMSGEAVYLADNLS-EAEKAVLSEVYGTADTAFLHRYYSLLA 794 LG+VF G +++ G+ + DNLS E KAV S D L YY++L Sbjct 1591 LGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRSSF--NFDQKELLAYYNMLV 1648 Query 795 LVKKWKYTVHDGVKSLKLNSNNCYVNVTMLMLDMLKEIKFIVPALQAAYLKHKGGDSTEF 854 KW+ + + K +NNC+VNV+ LML L +KF + Q A+L+ + G F Sbjct 1649 NCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSL-NLKFKIVQWQEAWLEFRSGRPARF 1707 Query 855 IALIMAYGDCTYGEPDDASRLLHTILSKAELTTQAKMVWRQWCNVCGVQDTTTTGLKACI 914 ++L++A G +G+P D+ L + S+ +LT A + C CGV+ TG+ A + Sbjct 1708 VSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTG-AICDFEIACK-CGVKQEQRTGVDAVM 1765 Query 915 YVGMNSLDELHATHEECCQCGDVRKRQLVEHNAPWLLLSGLNEAKVMTPTSQSAGPDYTA 974 + G S ++L + C CG + V + P+L+ S TP S + Sbjct 1766 HFGTLSREDLEIGYTVDCSCGK-KLIHCVRFDVPFLICSN-------TPASVKLPKGVGS 1817 Query 975 FNVFQGVETSVGHYLHVRVKDNLLYKYDSGSLSKTSDMKCKMTDVYYPKQ-RYSADCNVV 1033 N+F+G VGHY+HV+ + + YD+ ++ K +D+ ++D Y K + + + Sbjct 1818 ANIFKG--DKVGHYVHVKCEQSYQL-YDASNVKKVTDVTGNLSDCLYLKNLKQTFKSVLT 1874 Query 1034 VYSLDGNTWADVDPDLSAFYMKDGKYFTKKPVIEYSPATILSGSVYTNSCLVGHDGTIGS 1093 Y LD + PDLS +Y GKY+T++ + VYTN L+GH Sbjct 1875 TYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGH------ 1928 Query 1094 DAISSSFNNLLGFDNSKP-VSKKLTYSFFPDFEGDVILTEYSTYDPIYKNGAMLHGKPIL 1152 + N LGFD+SK V K+T +P GDV+L Y Y+ G + GKP++ Sbjct 1929 -TVCDILNAKLGFDSSKEFVEYKVTE--WPTATGDVVLATDDLYVKRYERGCITFGKPVI 1985 Query 1153 WVNNSKFD-SALNKFNRATLRQVYDIAPVTLENKYTVLQDNQIQQVEVEAPKEDAKPQSP 1211 W+++ + ++L FNR L ENK+ VL+ + + + + +P+ Sbjct 1986 WLSHEQASLNSLTYFNRPLLVD---------ENKFDVLKVDDVDDGGDISESDAKEPK-- 2034 Query 1212 VQVAEDIDNKLPIIKCKGLKKPF-VKDGYSFVNDPQGVNVIDTLGIDDLRALYVDRNLRL 1270 ++ IIK G+KKPF V+D +D + + +L I D+ +++ R Sbjct 2035 ---------EINIIKLSGVKKPFKVEDSVIVNDDTSEIKYVKSLSIVDVYDMWL-TGCRC 2084 Query 1271 IVLKENNWSALFNIHTVEKGDLSVIAASGSITRRVKILLGASSLFAQFASVTVNVTTAMG 1330 +V N S N+ T+ K I ++ LL + F NV A+ Sbjct 2085 VVRTANALSRAVNVPTIRK----FIKFGMTLVSIPIDLLNLREIKPVF-----NVVKAV- 2134 Query 1331 KALGRMTRNVITNTGIIGQGFALLKMLLILPFTFWK--SKNQSTVKVEVGALRTAGIVTT 1388 RN I+ F +K L +L F + K + N+ EV + T +V Sbjct 2135 -------RNKISAC------FNFIKWLFVLLFGWIKISADNKVIYTTEVASKLTCKLV-- 2179 Query 1389 NVVKQCASAAYDVLVVKFKRIDWKSTLRLLFLICTTGLLLSSLYYLFLFHQVLTSDVMLD 1448 + A+ + FK W R +I T LL ++ F++ V+ SD L Sbjct 2180 -------ALAFKNAFLTFK---WSVVARGACIIATIFLL----WFNFIYANVIFSDFYLP 2225 Query 1449 GAEGMLATY-----RELRSYLGIHSLCDGMVEAYRNVSYDVNDFCSNRSALCNWCLIGQD 1503 G L T+ + +++ + ++CD + + ++V + N +C N S C +CL G D Sbjct 2226 KI-GFLPTFVGKIVQWIKNTFSLVTICD--LYSIQDVGFK-NQYC-NGSIACQFCLAGFD 2280 Query 1504 SLTRYSAFQMIQTHV--TSYVINIDWVWFVMEFALAYVLYTSTFNVLLLVVSSQYFFSYT 1561 L Y A ++Q ++V + V+E ++Y LYT+ F L ++S Q ++ Sbjct 2281 MLDNYKAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWL 2340 Query 1562 GAFVNWRSYNYLVSGYFFCVTHIPLLGLVRIYNFLACLWFLRRFYNHVINGCKDTACLLC 1621 + + ++ V +P +R Y +A L + HV GC + CL C Sbjct 2341 PELLMLSTLHWSVRLLVSLANMLPAHVFMRFYIIIASFIKLFSLFRHVAYGCSKSGCLFC 2400 Query 1622 YKRNRLTRVEASTVVCGSKRTFYIVANGGTSFCCRHNWNCVDCDTAGIGNTFICEEVAND 1681 YKRNR RV+ ST+V G R + ++ANGGT FC +H WNC+DCD+ GNTFI E A D Sbjct 2401 YKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALD 2460 Query 1682 LTTSLRRLVKPTDKSHYYVESVTVKDSVVQLHYSREGASCYERYPLCYFTNLDKLKFKEV 1741 L+ L+R ++PTD +++ V V ++L Y R+G Y+ F + L +V Sbjct 2461 LSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFYDRDGQRTYDDVNASLFVDYSNLLHSKV 2520 Query 1742 CKTPTGIPEHNFLIYDSSDRGQENLARSACVYYSQVLSKPMLLVDSNMVTTVGDSREIAS 1801 P H ++ + +D+ +A V+Y+Q L +P+L+VD ++TT + Sbjct 2521 KSVPN---MHVVVVENDADKAN---FLNAAVFYAQSLFRPILMVDKILITTANTGTSVTE 2574 Query 1802 KMLDSYVNSFISLFGVNRDKLDKLVATARDCVKRGDDFQTVIKTFTDAARGPAGVESDVE 1861 M D YV++F+S+F V++ L+ L+ATA +K+G V+ TF AR ++SDV+ Sbjct 2575 TMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVD 2634 Query 1862 TSSIVDALQYAYKHDLQLTTEGFNNYVPSYIKPDSVATADLGCLIDLNAASVNQTSIRNA 1921 T + D++ A L+LT E NN VP+Y+K D++ ADLG LI +A V + A Sbjct 2635 TKCLADSVMSAVSAGLELTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIA 2694 Query 1922 NGACIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLTTSRLRSADNILSVKFS 1973 +CIW+ + +LS + +++ AC K + LT ++ + ++L+ FS Sbjct 2695 GVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLELTYNKQMANVSVLTTPFS 2746 Range 2: 1276 to 1425 Score:106 bits(265), Expect:8e-23, Method:Compositional matrix adjust., Identities:63/150(42%), Positives:85/150(56%), Gaps:2/150(1%) Query 347 DVTLVFGDAIAVARATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDYVNFYGP 406 +V V GD I V++ + ++VN AN H+ HGGG+A AI A+G E+ D V G Sbjct 1276 NVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKSKGV 1335 Query 407 LNVGDSTLLKGHGLATGILHVVGPDAR--ANQDIQLLKRCYKAFNKYPLVVSPLISAGIF 464 GD + G L +L+VVGPDAR Q LL+R YK NKY VV+ LISAGIF Sbjct 1336 CATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISAGIF 1395 Query 465 CVEPRVSLEYLLSVVHTKTYVVVNSEKVYN 494 V VSL YLL + +V N+++ ++ Sbjct 1396 SVPSDVSLTYLLGTAKKQVVLVSNNQEDFD 1425 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Human coronavirus OC43] Sequence ID: P0C6U7.1 Length: 4383 Range 1: 1483 to 2746 Score:471 bits(1213), Expect:4e-135, Method:Compositional matrix adjust., Identities:393/1377(29%), Positives:646/1377(46%), Gaps:137/1377(9%) Query 621 LNSDVAVQTPEQSFINT---VIANGGYHCWHLVTGELIVKGVSYRKLLNWSDQT-ICYAD 676 L D+A+ ++F+ + V+ G W +V + GV K + IC D Sbjct 1483 LRHDIALDDDARTFVQSNVDVLPEG----WRVVNKFYQINGVRTVKYFECTGGIDICSQD 1538 Query 677 NKFYVVKGQIALPFDSLEKCRTYLTSRAAQQKNVDVLVTIDGVNFRTVVLNNTTTYRVQL 736 F V+ I F+ T +A VD+L+T+DGVNF + ++ L Sbjct 1539 KVFGYVQQGI---FNK----ATVAQIKALFLDKVDILLTVDGVNFTNRFVPVGESFGKSL 1591 Query 737 GSVFYKGSDISDTIPTEKMSGEAVYLADNLS-EAEKAVLSEVYGTADTAFLHRYYSLLAL 795 G+VF G +++ G+ + DNLS E KAV S D L YY++L Sbjct 1592 GNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRSSF--NFDQKELLAYYNMLVN 1649 Query 796 VKKWKYTVHDGVKSLKLNSNNCYVNVTMLMLDMLKEIKFIVPALQAAYLKHKGGDSTEFI 855 KW+ V+ + K +NNC+VNV+ LML L + F + Q A+L+ + G F+ Sbjct 1650 CFKWQVVVNGKYFTFKQANNNCFVNVSCLMLQSL-HLTFKIVQWQEAWLEFRSGRPARFV 1708 Query 856 ALIMAYGDCTYGEPDDASRLLHTILSKAELTTQAKMVWRQWCNVCGVQDTTTTGLKACIY 915 AL++A G +G+P D+ L + S+ +LT A + C CGV+ TGL A ++ Sbjct 1709 ALVLAKGGFKFGDPADSRDFLRVVFSQVDLTG-AICDFEIACK-CGVKQEQRTGLDAVMH 1766 Query 916 VGMNSLDELHATHEECCQCGDVRKRQLVEHNAPWLLLSGLNEAKVMTPTSQSAGPDYTAF 975 G S ++L + C CG + V + P+L+ S TP S + Sbjct 1767 FGTLSREDLEIGYTVDCSCGK-KLIHCVRFDVPFLICSN-------TPASVKLPKGVGSA 1818 Query 976 NVFQGVETSVGHYLHVRVKDNLLYK-YDSGSLSKTSDMKCKMTDVYYPKQ-RYSADCNVV 1033 N+F G +VGHY+HV+ + + Y+ YD+ ++ K +D+ K++D Y K + + + Sbjct 1819 NIFIG--DNVGHYVHVKCEQS--YQLYDASNVKKVTDVTGKLSDCLYLKNLKQTFKSVLT 1874 Query 1034 VYSLDGNTWADVDPDLSAFYMKDGKYFTKKPVIEYSPATILSGSVYTNSCLVGHDGTIGS 1093 Y LD + PDLS +Y GKY+T++ + VYTN L+GH Sbjct 1875 TYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGH------ 1928 Query 1094 DAISSSFNNLLGFDNSKP-VSKKLTYSFFPDFEGDVILTEYSTYDPIYKNGAMLHGKPIL 1152 + S N+ LGFD+SK V K+T +P GDV+L Y Y+ G + GKP++ Sbjct 1929 -TVCDSLNSKLGFDSSKEFVEYKITE--WPTATGDVVLANDDLYVKRYERGCITFGKPVI 1985 Query 1153 WVNNSKFD-SALNKFNRATLRQVYDIAPVTLENKYTVLQDNQIQQVEVEAPKEDAKPQSP 1211 W+++ K ++L FNR P+ +++ + ++ + AK Sbjct 1986 WLSHEKASLNSLTYFNR----------PLLVDDNKFDVLKVDDVDDSGDSSESGAKETKE 2035 Query 1212 VQVAEDIDNKLPIIKCKGLKKPF-VKDGYSFVNDPQGVNVIDTLGIDDLRALYVDRNLRL 1270 + IIK G+KKPF V+D +D + +L I D+ +++ + Sbjct 2036 IN----------IIKLSGVKKPFKVEDSVIVNDDTSETKYVKSLSIVDVYDMWL-TGCKY 2084 Query 1271 IVLKENNWSALFNIHTVEKGDLSVIAASGSITRRVKILLGASSLFAQFASVTVNVTTAMG 1330 +V N S N+ T+ K G + I L L + VNV A+ Sbjct 2085 VVRTANALSRAVNVPTIRK-----FIKFGMTLVSIPIDL----LNLREIKPAVNVVKAV- 2134 Query 1331 KALGRMTRNVITNTGIIGQGFALLKMLLILPFTFWK--SKNQSTVKVEVGALRTAGIVTT 1388 RN + F +K L +L F + K + N+ E+ + T +V Sbjct 2135 -------RNKTSAC------FNFIKWLFVLLFGWIKISADNKVIYTTEIASKLTCKLV-- 2179 Query 1389 NVVKQCASAAYDVLVVKFKRIDWKSTLRLLFLICTTGLLLSSLYYLFLFHQVLTSDVMLD 1448 + A+ + FK W R +I T LL ++ F++ V+ SD L Sbjct 2180 -------ALAFKNAFLTFK---WSMVARGACIIATIFLL----WFNFIYANVIFSDFYLP 2225 Query 1449 GAEGMLATY-----RELRSYLGIHSLCDGMVEAYRNVSYDVNDFCSNRSALCNWCLIGQD 1503 G L T+ + +++ + ++CD + + ++V + N +C N S C +CL G D Sbjct 2226 KI-GFLPTFVGKIAQWIKNTFSLVTICD--LYSIQDVGFK-NQYC-NGSIACQFCLAGFD 2280 Query 1504 SLTRYSAFQMIQTHV--TSYVINIDWVWFVMEFALAYVLYTSTFNVLLLVVSSQYFFSYT 1561 L Y A ++Q ++V + V+E ++Y LYT+ F L ++S Q ++ Sbjct 2281 MLDNYKAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWL 2340 Query 1562 GAF-----VNWRSYNYLVSGYFFCVTHIPLLGLVRIYNFLACLWFLRRFYNHVINGCKDT 1616 ++W S+ LV+ +P +R Y +A L + HV GC + Sbjct 2341 PELFMLSTLHW-SFRLLVA----LANMLPAHVFMRFYIIIASFIKLFSLFKHVAYGCSKS 2395 Query 1617 ACLLCYKRNRLTRVEASTVVCGSKRTFYIVANGGTSFCCRHNWNCVDCDTAGIGNTFICE 1676 CL CYKRNR RV+ ST+V G R + ++ANGGT FC +H WNC+DCD+ GNTFI Sbjct 2396 GCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITV 2455 Query 1677 EVANDLTTSLRRLVKPTDKSHYYVESVTVKDSVVQLHYSREGASCYERYPLCYFTNLDKL 1736 E A DL+ L+R ++PTD +++ V V ++L Y R+G Y+ F + L Sbjct 2456 EAALDLSKELKRPIQPTDVAYHTVTDVKQVGCSMRLFYDRDGQRIYDDVNASLFVDYSNL 2515 Query 1737 KFKEVCKTPTGIPEHNFLIYDSSDRGQENLARSACVYYSQVLSKPMLLVDSNMVTTVGDS 1796 +V P H ++ + +D+ +A V+Y+Q L +P+L+VD N++TT Sbjct 2516 LHSKVKSVPN---MHVVVVENDADKAN---FLNAAVFYAQSLFRPILMVDKNLITTANTG 2569 Query 1797 REIASKMLDSYVNSFISLFGVNRDKLDKLVATARDCVKRGDDFQTVIKTFTDAARGPAGV 1856 + M D YV++F+S+F V++ L+ L+ATA +K+G V+ TF AR + Sbjct 2570 TSVTETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQIYKVLDTFLSCARKSCSI 2629 Query 1857 ESDVETSSIVDALQYAYKHDLQLTTEGFNNYVPSYIKPDSVATADLGCLIDLNAASVNQT 1916 +SDV+T + D++ A L+LT E NN VP+Y+K D++ ADLG LI +A V Sbjct 2630 DSDVDTKCLADSVMSAVSAGLELTDESCNNLVPTYLKSDNIVAADLGVLIQNSAKHVQGN 2689 Query 1917 SIRNANGACIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLTTSRLRSADNILSVKFS 1973 + A +CIW+ + + S + +++ AC K + +LT ++ + ++L+ FS Sbjct 2690 VAKIAGVSCIWSVDAFNQFSSDFQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFS 2746 Range 2: 1276 to 1425 Score:104 bits(259), Expect:4e-22, Method:Compositional matrix adjust., Identities:62/150(41%), Positives:85/150(56%), Gaps:2/150(1%) Query 347 DVTLVFGDAIAVARATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDYVNFYGP 406 +V V GD I V++ + ++VN AN H+ HGGG+A AI A+G E+ + V G Sbjct 1276 NVCFVKGDIIKVSKLVKAEVVVNPANGHMVHGGGVAKAIAVAAGQQFVKETTNMVKSKGV 1335 Query 407 LNVGDSTLLKGHGLATGILHVVGPDAR--ANQDIQLLKRCYKAFNKYPLVVSPLISAGIF 464 GD + G L +L+VVGPDAR Q LL+R YK FN Y VV+ LISAGIF Sbjct 1336 CATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYVLLERVYKHFNNYDCVVTTLISAGIF 1395 Query 465 CVEPRVSLEYLLSVVHTKTYVVVNSEKVYN 494 V VSL YLL + +V N+++ ++ Sbjct 1396 SVPSDVSLTYLLGTAKKQVVLVSNNQEDFD 1425 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Human coronavirus OC43] Sequence ID: P0C6X6.1 Length: 7095 Range 1: 1483 to 2746 Score:471 bits(1211), Expect:8e-135, Method:Compositional matrix adjust., Identities:392/1376(28%), Positives:644/1376(46%), Gaps:135/1376(9%) Query 621 LNSDVAVQTPEQSFINT---VIANGGYHCWHLVTGELIVKGVSYRKLLNWSDQT-ICYAD 676 L D+A+ ++F+ + V+ G W +V + GV K + IC D Sbjct 1483 LRHDIALDDDARTFVQSNVDVLPEG----WRVVNKFYQINGVRTVKYFECTGGIDICSQD 1538 Query 677 NKFYVVKGQIALPFDSLEKCRTYLTSRAAQQKNVDVLVTIDGVNFRTVVLNNTTTYRVQL 736 F V+ I F+ T +A VD+L+T+DGVNF + ++ L Sbjct 1539 KVFGYVQQGI---FNK----ATVAQIKALFLDKVDILLTVDGVNFTNRFVPVGESFGKSL 1591 Query 737 GSVFYKGSDISDTIPTEKMSGEAVYLADNLS-EAEKAVLSEVYGTADTAFLHRYYSLLAL 795 G+VF G +++ G+ + DNLS E KAV S D L YY++L Sbjct 1592 GNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRSSF--NFDQKELLAYYNMLVN 1649 Query 796 VKKWKYTVHDGVKSLKLNSNNCYVNVTMLMLDMLKEIKFIVPALQAAYLKHKGGDSTEFI 855 KW+ V+ + K +NNC+VNV+ LML L + F + Q A+L+ + G F+ Sbjct 1650 CFKWQVVVNGKYFTFKQANNNCFVNVSCLMLQSL-HLTFKIVQWQEAWLEFRSGRPARFV 1708 Query 856 ALIMAYGDCTYGEPDDASRLLHTILSKAELTTQAKMVWRQWCNVCGVQDTTTTGLKACIY 915 AL++A G +G+P D+ L + S+ +LT A + C CGV+ TGL A ++ Sbjct 1709 ALVLAKGGFKFGDPADSRDFLRVVFSQVDLTG-AICDFEIACK-CGVKQEQRTGLDAVMH 1766 Query 916 VGMNSLDELHATHEECCQCGDVRKRQLVEHNAPWLLLSGLNEAKVMTPTSQSAGPDYTAF 975 G S ++L + C CG + V + P+L+ S TP S + Sbjct 1767 FGTLSREDLEIGYTVDCSCGK-KLIHCVRFDVPFLICSN-------TPASVKLPKGVGSA 1818 Query 976 NVFQGVETSVGHYLHVRVKDNLLYKYDSGSLSKTSDMKCKMTDVYYPKQ-RYSADCNVVV 1034 N+F G +VGHY+HV+ + + YD+ ++ K +D+ K++D Y K + + + Sbjct 1819 NIFIG--DNVGHYVHVKCEQSYQL-YDASNVKKVTDVTGKLSDCLYLKNLKQTFKSVLTT 1875 Query 1035 YSLDGNTWADVDPDLSAFYMKDGKYFTKKPVIEYSPATILSGSVYTNSCLVGHDGTIGSD 1094 Y LD + PDLS +Y GKY+T++ + VYTN L+GH Sbjct 1876 YYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGH------- 1928 Query 1095 AISSSFNNLLGFDNSKP-VSKKLTYSFFPDFEGDVILTEYSTYDPIYKNGAMLHGKPILW 1153 + S N+ LGFD+SK V K+T +P GDV+L Y Y+ G + GKP++W Sbjct 1929 TVCDSLNSKLGFDSSKEFVEYKITE--WPTATGDVVLANDDLYVKRYERGCITFGKPVIW 1986 Query 1154 VNNSKFD-SALNKFNRATLRQVYDIAPVTLENKYTVLQDNQIQQVEVEAPKEDAKPQSPV 1212 +++ K ++L FNR P+ +++ + ++ + AK + Sbjct 1987 LSHEKASLNSLTYFNR----------PLLVDDNKFDVLKVDDVDDSGDSSESGAKETKEI 2036 Query 1213 QVAEDIDNKLPIIKCKGLKKPF-VKDGYSFVNDPQGVNVIDTLGIDDLRALYVDRNLRLI 1271 IIK G+KKPF V+D +D + +L I D+ +++ + + Sbjct 2037 N----------IIKLSGVKKPFKVEDSVIVNDDTSETKYVKSLSIVDVYDMWL-TGCKYV 2085 Query 1272 VLKENNWSALFNIHTVEKGDLSVIAASGSITRRVKILLGASSLFAQFASVTVNVTTAMGK 1331 V N S N+ T+ K G + I L L + VNV A+ Sbjct 2086 VRTANALSRAVNVPTIRK-----FIKFGMTLVSIPIDL----LNLREIKPAVNVVKAV-- 2134 Query 1332 ALGRMTRNVITNTGIIGQGFALLKMLLILPFTFWK--SKNQSTVKVEVGALRTAGIVTTN 1389 RN + F +K L +L F + K + N+ E+ + T +V Sbjct 2135 ------RNKTSAC------FNFIKWLFVLLFGWIKISADNKVIYTTEIASKLTCKLV--- 2179 Query 1390 VVKQCASAAYDVLVVKFKRIDWKSTLRLLFLICTTGLLLSSLYYLFLFHQVLTSDVMLDG 1449 + A+ + FK W R +I T LL ++ F++ V+ SD L Sbjct 2180 ------ALAFKNAFLTFK---WSMVARGACIIATIFLL----WFNFIYANVIFSDFYLPK 2226 Query 1450 AEGMLATY-----RELRSYLGIHSLCDGMVEAYRNVSYDVNDFCSNRSALCNWCLIGQDS 1504 G L T+ + +++ + ++CD + + ++V + N +C N S C +CL G D Sbjct 2227 I-GFLPTFVGKIAQWIKNTFSLVTICD--LYSIQDVGFK-NQYC-NGSIACQFCLAGFDM 2281 Query 1505 LTRYSAFQMIQTHV--TSYVINIDWVWFVMEFALAYVLYTSTFNVLLLVVSSQYFFSYTG 1562 L Y A ++Q ++V + V+E ++Y LYT+ F L ++S Q ++ Sbjct 2282 LDNYKAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLP 2341 Query 1563 AF-----VNWRSYNYLVSGYFFCVTHIPLLGLVRIYNFLACLWFLRRFYNHVINGCKDTA 1617 ++W S+ LV+ +P +R Y +A L + HV GC + Sbjct 2342 ELFMLSTLHW-SFRLLVA----LANMLPAHVFMRFYIIIASFIKLFSLFKHVAYGCSKSG 2396 Query 1618 CLLCYKRNRLTRVEASTVVCGSKRTFYIVANGGTSFCCRHNWNCVDCDTAGIGNTFICEE 1677 CL CYKRNR RV+ ST+V G R + ++ANGGT FC +H WNC+DCD+ GNTFI E Sbjct 2397 CLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVE 2456 Query 1678 VANDLTTSLRRLVKPTDKSHYYVESVTVKDSVVQLHYSREGASCYERYPLCYFTNLDKLK 1737 A DL+ L+R ++PTD +++ V V ++L Y R+G Y+ F + L Sbjct 2457 AALDLSKELKRPIQPTDVAYHTVTDVKQVGCSMRLFYDRDGQRIYDDVNASLFVDYSNLL 2516 Query 1738 FKEVCKTPTGIPEHNFLIYDSSDRGQENLARSACVYYSQVLSKPMLLVDSNMVTTVGDSR 1797 +V P H ++ + +D+ +A V+Y+Q L +P+L+VD N++TT Sbjct 2517 HSKVKSVPN---MHVVVVENDADKAN---FLNAAVFYAQSLFRPILMVDKNLITTANTGT 2570 Query 1798 EIASKMLDSYVNSFISLFGVNRDKLDKLVATARDCVKRGDDFQTVIKTFTDAARGPAGVE 1857 + M D YV++F+S+F V++ L+ L+ATA +K+G V+ TF AR ++ Sbjct 2571 SVTETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQIYKVLDTFLSCARKSCSID 2630 Query 1858 SDVETSSIVDALQYAYKHDLQLTTEGFNNYVPSYIKPDSVATADLGCLIDLNAASVNQTS 1917 SDV+T + D++ A L+LT E NN VP+Y+K D++ ADLG LI +A V Sbjct 2631 SDVDTKCLADSVMSAVSAGLELTDESCNNLVPTYLKSDNIVAADLGVLIQNSAKHVQGNV 2690 Query 1918 IRNANGACIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLTTSRLRSADNILSVKFS 1973 + A +CIW+ + + S + +++ AC K + +LT ++ + ++L+ FS Sbjct 2691 AKIAGVSCIWSVDAFNQFSSDFQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPFS 2746 Range 2: 1276 to 1425 Score:103 bits(258), Expect:5e-22, Method:Compositional matrix adjust., Identities:62/150(41%), Positives:85/150(56%), Gaps:2/150(1%) Query 347 DVTLVFGDAIAVARATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDYVNFYGP 406 +V V GD I V++ + ++VN AN H+ HGGG+A AI A+G E+ + V G Sbjct 1276 NVCFVKGDIIKVSKLVKAEVVVNPANGHMVHGGGVAKAIAVAAGQQFVKETTNMVKSKGV 1335 Query 407 LNVGDSTLLKGHGLATGILHVVGPDAR--ANQDIQLLKRCYKAFNKYPLVVSPLISAGIF 464 GD + G L +L+VVGPDAR Q LL+R YK FN Y VV+ LISAGIF Sbjct 1336 CATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYVLLERVYKHFNNYDCVVTTLISAGIF 1395 Query 465 CVEPRVSLEYLLSVVHTKTYVVVNSEKVYN 494 V VSL YLL + +V N+++ ++ Sbjct 1396 SVPSDVSLTYLLGTAKKQVVLVSNNQEDFD 1425 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Human coronavirus HKU1 (isolate N2)] Sequence ID: P0C6U4.1 Length: 4441 Range 1: 1620 to 2804 Score:454 bits(1168), Expect:1e-129, Method:Compositional matrix adjust., Identities:361/1282(28%), Positives:592/1282(46%), Gaps:113/1282(8%) Query 708 KNVDVLVTIDGVNFRTVVLNNTTTYRVQLGSVFYKGSDISDTIPTEKMSGEAVYLADNLS 767 K +DVL+T+DGVNF+++ L + LG+VF G D++ ++ + + +Y +NLS Sbjct 1620 KKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENLS 1679 Query 768 EAEKAVLSEVYGTADTAFLHRYYSLLALVKKWKYTVHDGVKSLKLNSNNCYVNVTMLMLD 827 A+ + + +G D L YY+ L V KW V+ S + + NNCYVNV LML Sbjct 1680 LADISAVQSSFG-FDQQQLLAYYNFLT-VCKWSVVVNGPFFSFEQSHNNCYVNVACLMLQ 1737 Query 828 MLKEIKFIVPALQAAYLKHKGGDSTEFIALIMAYGDCTYGEPDDASRLLHTILSKAELTT 887 + +KF Q A+ + + G +AL++A G + EP DA+ + +L +A+L+ Sbjct 1738 HI-NLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLS- 1795 Query 888 QAKMVWRQWCNVCGVQDTTTTGLKACIYVGMNSLDELHATHEECCQCGDVRKRQLVEHNA 947 A C+ CG++ + G+ A ++ G + +L ++ C C R + N Sbjct 1796 GAICELELICD-CGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAG-RIVHCTKLNV 1853 Query 948 PWLLLSGLNEAKVMTPTSQSAGPDYTAFNVFQGVETSVGHYLHVRVKDNLLYKYDSGSLS 1007 P+L+ S TP S+ D A N+F GV VGHY H++ + YD+ S+ Sbjct 1854 PFLICSN-------TPLSKDLPDDVVAANMFMGV--GVGHYTHLKCGSPYQH-YDACSVK 1903 Query 1008 KTSDMKCKMTDVYYPKQRYSADCNVVV-YSLDGNTWADVDPDLSAFYMKDGKYFTKKPVI 1066 K + + +TD Y K +++ Y LD +PDLS +Y +GKY+TK P+I Sbjct 1904 KYTGVSGCLTDCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYTK-PII 1962 Query 1067 --EYSPATILSGSVYTNSCLVGHDGTIGSDAISSSFNNLLGFDNSKP-VSKKLTYSFFPD 1123 ++ P + G VYTN LVGHD I + N+ LGF+ P V K+T +P Sbjct 1963 KAQFKPFAKVDG-VYTNFKLVGHD-------ICAQLNDKLGFNVDLPFVEYKVT--VWPV 2012 Query 1124 FEGDVILTEYSTYDPIYKNGAMLHGKPILWVNNSKFD-SALNKFNRATLRQVYDIAPVTL 1182 GDV+L Y Y G GKP++W+ + + ++L FN+ + + Sbjct 2013 ATGDVVLASDDLYVKRYFKGCETFGKPVIWLCHDEASLNSLTYFNKPSFKS--------- 2063 Query 1183 ENKYTVLQDNQIQQVEVEAPKEDAKPQSPVQVAEDIDNKLPIIKCKGLKKPFVKDGYSFV 1242 EN+Y+VL + + + E + + +S + E +K KG++K + V Sbjct 2064 ENRYSVLSVDSVSE-ESQGNVVTSVMESQISTKE--------VKLKGVRKTVKIEDAIIV 2114 Query 1243 NDPQG-VNVIDTLGIDDLRALYVDRNLRLIVLKENNWSALFNIHTVEKGDLSVIAASGSI 1301 ND + V+ +L + D+ +Y+ +V N S L S Sbjct 2115 NDENSSIKVVKSLSLVDVWDMYL-TGCDYVVWVANELSRLVK----------------SP 2157 Query 1302 TRRVKILLGASSLFAQFASVTVNVTTAMGKALGRMTRNVITNTGIIGQGFALLKMLLILP 1361 T R I G + ++ +++ + + I GF LK L I Sbjct 2158 TVREYIRYGIKPI-----TIPIDLLCLRDDNQTLLVPKIFKARAIEFYGF--LKWLFIYV 2210 Query 1362 FTFWKSKNQSTVKVEVGALRTAGIVTTNVVKQCASAAYDVLVVK--FKRIDWKSTLRLLF 1419 F+ N T+ TT + + + L +K F+ W ++ Sbjct 2211 FSLLHFTNDKTI-----------FYTTEIASKFTFNLF-CLALKNAFQTFRWSIFIKGFL 2258 Query 1420 LICTTGLLLSSLYYLFLFHQVLTSDVMLDGAE------GMLATYRELRSYLGIHSLCDGM 1473 ++ T L ++ FL+ V+ SD L G + + +++ G+ ++CD Sbjct 2259 VVATVFLF----WFNFLYINVIFSDFYLPNISVFPIFVGRIVMW--IKATFGLVTICD-- 2310 Query 1474 VEAYRNVSYDVNDFCSNRSALCNWCLIGQDSLTRYSAFQMIQTHVTSYVI--NIDWVWFV 1531 Y + N S +C C G D L Y+A +Q V V+ + V + Sbjct 2311 --FYSKLGVGFTSHFCNGSFICELCYSGFDMLDTYAAIDFVQYEVDRRVLFDYVSLVKLI 2368 Query 1532 MEFALAYVLYTSTFNVLLLVVSSQYFFSYTGAFVNWRSYNYLVSGYFFCVTHIPLLGLVR 1591 +E + Y LYT F L ++ Q F ++ + ++L+ F +P L+R Sbjct 2369 VELVIGYSLYTVWFYPLFCLIGLQLFTTWLPDLFMLETMHWLIRFIVFVANMLPAFVLLR 2428 Query 1592 IYNFLACLWFLRRFYNHVINGCKDTACLLCYKRNRLTRVEASTVVCGSKRTFYIVANGGT 1651 Y + ++ + F H++ GC CL CYKRN RV+ ST+V G R + I ANGGT Sbjct 2429 FYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVIRYYDITANGGT 2488 Query 1652 SFCCRHNWNCVDCDTAGIGNTFICEEVANDLTTSLRRLVKPTDKSHYYVESVTVKDSVVQ 1711 FC +H WNC +C + GNTFI E A +L+ L+R V PTD SHY V + +++ Sbjct 2489 GFCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVVTDIKQVGCMMR 2548 Query 1712 LHYSREGASCYERYPLCYFTNLDKLKFKEVCKTPTGIPEHNFLIYDSSDRGQENLARSAC 1771 L Y R+G Y+ F +++ L +V P SD + N +A Sbjct 2549 LFYDRDGQRVYDDVDASLFVDINNLLHSKVKVVPNLYVVVV-----ESDADRANFL-NAV 2602 Query 1772 VYYSQVLSKPMLLVDSNMVTTVGDSREIASKMLDSYVNSFISLFGVNRDKLDKLVATARD 1831 V+Y+Q L +P+LLVD ++TT + + M D YV++F+S F V+R + V A Sbjct 2603 VFYAQSLYRPILLVDKKLITTACNGISVTQTMFDVYVDTFMSHFDVDRKSFNNFVNIAHA 2662 Query 1832 CVKRGDDFQTVIKTFTDAARGPAGVESDVETSSIVDALQYAYKHDLQLTTEGFNNYVPSY 1891 ++ G + V+ TF R ++SDVET I ++ A L+ T E +NN VP+Y Sbjct 2663 SLREGVQLEKVLDTFVGCVRKCCSIDSDVETRFITKSMISAVAAGLEFTDENYNNLVPTY 2722 Query 1892 IKPDSVATADLGCLIDLNAASVNQTSIRNANGACIWNSSDYMKLSDSLKRQIRIACRKCN 1951 +K D++ ADLG LI A V + AN +CIW + +L+ L+ +++ AC K Sbjct 2723 LKSDNIVAADLGVLIQNGAKHVQGNVAKAANISCIWFIDTFNQLTADLQHKLKKACVKTG 2782 Query 1952 IPFRLTTSRLRSADNILSVKFS 1973 + +LT ++ ++ IL+ FS Sbjct 2783 LKLKLTFNKQEASVPILTTPFS 2804 Range 2: 1322 to 1482 Score:106 bits(264), Expect:1e-22, Method:Compositional matrix adjust., Identities:66/161(41%), Positives:88/161(54%), Gaps:2/161(1%) Query 336 LKNFKHIVLNNDVTLVFGDAIAVARATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQA 395 L + + +V V GD I VAR + ++VN AN H+ HGGG+A AI A+G Sbjct 1322 LAQLYGLCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIAVAAGKKFSK 1381 Query 396 ESDDYVNFYGPLNVGDSTLLKGHGLATGILHVVGPDARAN--QDIQLLKRCYKAFNKYPL 453 E+ V G VGD + G L IL++VGPDAR + Q LL R YK N Y Sbjct 1382 ETAAMVKSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARAYKHLNNYDC 1441 Query 454 VVSPLISAGIFCVEPRVSLEYLLSVVHTKTYVVVNSEKVYN 494 +S LISAGIF V VSL YLL VV + +V N+++ ++ Sbjct 1442 CLSTLISAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFD 1482 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Human coronavirus HKU1 (isolate N1)] Sequence ID: P0C6U3.1 Length: 4471 Range 1: 1650 to 2834 Score:453 bits(1165), Expect:4e-129, Method:Compositional matrix adjust., Identities:361/1282(28%), Positives:591/1282(46%), Gaps:113/1282(8%) Query 708 KNVDVLVTIDGVNFRTVVLNNTTTYRVQLGSVFYKGSDISDTIPTEKMSGEAVYLADNLS 767 K +DVL+T+DGVNF+++ L + LG+VF G D++ ++ + + +Y +NLS Sbjct 1650 KKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENLS 1709 Query 768 EAEKAVLSEVYGTADTAFLHRYYSLLALVKKWKYTVHDGVKSLKLNSNNCYVNVTMLMLD 827 A+ + + +G D L YY+ L V KW V+ S + + NNCYVNV LML Sbjct 1710 LADISAVQSSFG-FDQQQLLAYYNFLT-VCKWSVVVNGPFFSFEQSHNNCYVNVACLMLQ 1767 Query 828 MLKEIKFIVPALQAAYLKHKGGDSTEFIALIMAYGDCTYGEPDDASRLLHTILSKAELTT 887 + +KF Q A+ + + G +AL++A G + EP DA+ + +L +A+L+ Sbjct 1768 HI-NLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLS- 1825 Query 888 QAKMVWRQWCNVCGVQDTTTTGLKACIYVGMNSLDELHATHEECCQCGDVRKRQLVEHNA 947 A C+ CG++ + G+ A ++ G + +L ++ C C R + N Sbjct 1826 GAICELELICD-CGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAG-RIVHCTKLNV 1883 Query 948 PWLLLSGLNEAKVMTPTSQSAGPDYTAFNVFQGVETSVGHYLHVRVKDNLLYKYDSGSLS 1007 P+L+ S TP S+ D A N+F GV VGHY H++ + YD+ S+ Sbjct 1884 PFLICSN-------TPLSKDLPDDVVAANMFMGV--GVGHYTHLKCGSPYQH-YDACSVK 1933 Query 1008 KTSDMKCKMTDVYYPKQRYSADCNVVV-YSLDGNTWADVDPDLSAFYMKDGKYFTKKPVI 1066 K + + +TD Y K +++ Y LD +PDLS +Y +GKY+TK P+I Sbjct 1934 KYTGVSGCLTDCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYTK-PII 1992 Query 1067 --EYSPATILSGSVYTNSCLVGHDGTIGSDAISSSFNNLLGFDNSKP-VSKKLTYSFFPD 1123 ++ P + G VYTN LVGHD I + N+ LGF+ P V K+T +P Sbjct 1993 KAQFKPFAKVDG-VYTNFKLVGHD-------ICAQLNDKLGFNVDLPFVEYKVT--VWPV 2042 Query 1124 FEGDVILTEYSTYDPIYKNGAMLHGKPILWVNNSKFD-SALNKFNRATLRQVYDIAPVTL 1182 GDV+L Y Y G GKP++W + + ++L FN+ + + Sbjct 2043 ATGDVVLASDDLYVKRYFKGCETFGKPVIWFCHDEASLNSLTYFNKPSFKS--------- 2093 Query 1183 ENKYTVLQDNQIQQVEVEAPKEDAKPQSPVQVAEDIDNKLPIIKCKGLKKPFVKDGYSFV 1242 EN+Y+VL + + + E + + +S + E +K KG++K + V Sbjct 2094 ENRYSVLSVDSVSE-ESQGNVVTSVMESQISTKE--------VKLKGVRKTVKIEDAIIV 2144 Query 1243 NDPQG-VNVIDTLGIDDLRALYVDRNLRLIVLKENNWSALFNIHTVEKGDLSVIAASGSI 1301 ND + V+ +L + D+ +Y+ +V N S L S Sbjct 2145 NDENSSIKVVKSLSLVDVWDMYL-TGCDYVVWVANELSRLVK----------------SP 2187 Query 1302 TRRVKILLGASSLFAQFASVTVNVTTAMGKALGRMTRNVITNTGIIGQGFALLKMLLILP 1361 T R I G + ++ +++ + + I GF LK L I Sbjct 2188 TVREYIRYGIKPI-----TIPIDLLCLRDDNQTLLVPKIFKARAIEFYGF--LKWLFIYV 2240 Query 1362 FTFWKSKNQSTVKVEVGALRTAGIVTTNVVKQCASAAYDVLVVK--FKRIDWKSTLRLLF 1419 F+ N T+ TT + + + L +K F+ W ++ Sbjct 2241 FSLLHFTNDKTI-----------FYTTEIASKFTFNLF-CLALKNAFQTFRWSIFIKGFL 2288 Query 1420 LICTTGLLLSSLYYLFLFHQVLTSDVMLDGAE------GMLATYRELRSYLGIHSLCDGM 1473 ++ T L ++ FL+ V+ SD L G + + +++ G+ ++CD Sbjct 2289 VVATVFLF----WFNFLYINVIFSDFYLPNISVFPIFVGRIVMW--IKATFGLVTICD-- 2340 Query 1474 VEAYRNVSYDVNDFCSNRSALCNWCLIGQDSLTRYSAFQMIQTHVTSYVI--NIDWVWFV 1531 Y + N S +C C G D L Y+A +Q V V+ + V + Sbjct 2341 --FYSKLGVGFTSHFCNGSFICELCHSGFDMLDTYAAIDFVQYEVDRRVLFDYVSLVKLI 2398 Query 1532 MEFALAYVLYTSTFNVLLLVVSSQYFFSYTGAFVNWRSYNYLVSGYFFCVTHIPLLGLVR 1591 +E + Y LYT F L ++ Q F ++ + ++L+ F +P L+R Sbjct 2399 VELVIGYSLYTVWFYPLFCLIGLQLFTTWLPDLFMLETMHWLIRFIVFVANMLPAFVLLR 2458 Query 1592 IYNFLACLWFLRRFYNHVINGCKDTACLLCYKRNRLTRVEASTVVCGSKRTFYIVANGGT 1651 Y + ++ + F H++ GC CL CYKRN RV+ ST+V G R + I ANGGT Sbjct 2459 FYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVIRYYDITANGGT 2518 Query 1652 SFCCRHNWNCVDCDTAGIGNTFICEEVANDLTTSLRRLVKPTDKSHYYVESVTVKDSVVQ 1711 FC +H WNC +C + GNTFI E A +L+ L+R V PTD SHY V + +++ Sbjct 2519 GFCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVVTDIKQVGCMMR 2578 Query 1712 LHYSREGASCYERYPLCYFTNLDKLKFKEVCKTPTGIPEHNFLIYDSSDRGQENLARSAC 1771 L Y R+G Y+ F +++ L +V P SD + N +A Sbjct 2579 LFYDRDGQRVYDDVDASLFVDINNLLHSKVKVVPNLYVVVV-----ESDADRANFL-NAV 2632 Query 1772 VYYSQVLSKPMLLVDSNMVTTVGDSREIASKMLDSYVNSFISLFGVNRDKLDKLVATARD 1831 V+Y+Q L +P+LLVD ++TT + + M D YV++F+S F V+R + V A Sbjct 2633 VFYAQSLYRPILLVDKKLITTACNGISVTQTMFDVYVDTFMSHFDVDRKSFNNFVNIAHA 2692 Query 1832 CVKRGDDFQTVIKTFTDAARGPAGVESDVETSSIVDALQYAYKHDLQLTTEGFNNYVPSY 1891 ++ G + V+ TF R ++SDVET I ++ A L+ T E +NN VP+Y Sbjct 2693 SLREGVQLEKVLDTFVGCVRKCCSIDSDVETRFITKSMISAVAAGLEFTDENYNNLVPTY 2752 Query 1892 IKPDSVATADLGCLIDLNAASVNQTSIRNANGACIWNSSDYMKLSDSLKRQIRIACRKCN 1951 +K D++ ADLG LI A V + AN +CIW + +L+ L+ +++ AC K Sbjct 2753 LKSDNIVAADLGVLIQNGAKHVQGNVAKAANISCIWFIDAFNQLTADLQHKLKKACVKTG 2812 Query 1952 IPFRLTTSRLRSADNILSVKFS 1973 + +LT ++ ++ IL+ FS Sbjct 2813 LKLKLTFNKQEASVPILTTPFS 2834 Range 2: 1352 to 1512 Score:106 bits(264), Expect:1e-22, Method:Compositional matrix adjust., Identities:66/161(41%), Positives:88/161(54%), Gaps:2/161(1%) Query 336 LKNFKHIVLNNDVTLVFGDAIAVARATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQA 395 L + + +V V GD I VAR + ++VN AN H+ HGGG+A AI A+G Sbjct 1352 LPQLYGLCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIAVAAGKKFSK 1411 Query 396 ESDDYVNFYGPLNVGDSTLLKGHGLATGILHVVGPDARAN--QDIQLLKRCYKAFNKYPL 453 E+ V G VGD + G L IL++VGPDAR + Q LL R YK N Y Sbjct 1412 ETAAMVKSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARAYKHLNNYDC 1471 Query 454 VVSPLISAGIFCVEPRVSLEYLLSVVHTKTYVVVNSEKVYN 494 +S LISAGIF V VSL YLL VV + +V N+++ ++ Sbjct 1472 CLSTLISAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFD 1512 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Human coronavirus HKU1 (isolate N5)] Sequence ID: P0C6U5.1 Length: 4421 Range 1: 1600 to 2784 Score:452 bits(1163), Expect:6e-129, Method:Compositional matrix adjust., Identities:361/1282(28%), Positives:591/1282(46%), Gaps:113/1282(8%) Query 708 KNVDVLVTIDGVNFRTVVLNNTTTYRVQLGSVFYKGSDISDTIPTEKMSGEAVYLADNLS 767 K +DVL+T+DGVNF+++ L + LG+VF G D++ ++ + + +Y +NLS Sbjct 1600 KKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENLS 1659 Query 768 EAEKAVLSEVYGTADTAFLHRYYSLLALVKKWKYTVHDGVKSLKLNSNNCYVNVTMLMLD 827 A+ + + +G D L YY+ L V KW V+ S + + NNCYVNV LML Sbjct 1660 LADISAVQSSFG-FDQQQLLAYYNFLT-VCKWSVVVNGPFFSFEQSHNNCYVNVACLMLQ 1717 Query 828 MLKEIKFIVPALQAAYLKHKGGDSTEFIALIMAYGDCTYGEPDDASRLLHTILSKAELTT 887 + +KF Q A+ + + G +AL++A G + EP DA+ + +L +A+L+ Sbjct 1718 HI-NLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLS- 1775 Query 888 QAKMVWRQWCNVCGVQDTTTTGLKACIYVGMNSLDELHATHEECCQCGDVRKRQLVEHNA 947 A C+ CG++ + G+ A ++ G + +L ++ C C R + N Sbjct 1776 GAICELELICD-CGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAG-RIVHCTKLNV 1833 Query 948 PWLLLSGLNEAKVMTPTSQSAGPDYTAFNVFQGVETSVGHYLHVRVKDNLLYKYDSGSLS 1007 P+L+ S TP S+ D A N+F GV VGHY H++ + YD+ S+ Sbjct 1834 PFLICSN-------TPLSKDLPDDVVAANMFMGV--GVGHYTHLKCGSPYQH-YDACSVK 1883 Query 1008 KTSDMKCKMTDVYYPKQRYSADCNVVV-YSLDGNTWADVDPDLSAFYMKDGKYFTKKPVI 1066 K + + +TD Y K +++ Y LD +PDLS +Y +GKY+TK P+I Sbjct 1884 KYTGVSGCLTDCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYTK-PII 1942 Query 1067 --EYSPATILSGSVYTNSCLVGHDGTIGSDAISSSFNNLLGFDNSKP-VSKKLTYSFFPD 1123 ++ P + G VYTN LVGHD I + N+ LGF+ P V K+T +P Sbjct 1943 KAQFKPFAKVDG-VYTNFKLVGHD-------ICAQLNDKLGFNVDLPFVEYKVT--VWPV 1992 Query 1124 FEGDVILTEYSTYDPIYKNGAMLHGKPILWVNNSKFD-SALNKFNRATLRQVYDIAPVTL 1182 GDV+L Y Y G GKP++W + + ++L FN+ + + Sbjct 1993 ATGDVVLASDDLYVKRYFKGCETFGKPVIWFCHDEASLNSLTYFNKPSFKS--------- 2043 Query 1183 ENKYTVLQDNQIQQVEVEAPKEDAKPQSPVQVAEDIDNKLPIIKCKGLKKPFVKDGYSFV 1242 EN+Y+VL + + + E + + +S + E +K KG++K + V Sbjct 2044 ENRYSVLSVDSVSE-ESQGNVVTSVMESQISTKE--------VKLKGVRKTVKIEDAIIV 2094 Query 1243 NDPQG-VNVIDTLGIDDLRALYVDRNLRLIVLKENNWSALFNIHTVEKGDLSVIAASGSI 1301 ND + V+ +L + D+ +Y+ +V N S L S Sbjct 2095 NDENSSIKVVKSLSLVDVWDMYL-TGCDYVVWVANELSRLVK----------------SP 2137 Query 1302 TRRVKILLGASSLFAQFASVTVNVTTAMGKALGRMTRNVITNTGIIGQGFALLKMLLILP 1361 T R I G + ++ +++ + + I GF LK L I Sbjct 2138 TVREYIRYGIKPI-----TIPIDLLCLRDDNQTLLVPKIFKARAIEFYGF--LKWLFIYV 2190 Query 1362 FTFWKSKNQSTVKVEVGALRTAGIVTTNVVKQCASAAYDVLVVK--FKRIDWKSTLRLLF 1419 F+ N T+ TT + + + L +K F+ W ++ Sbjct 2191 FSLLHFTNDKTI-----------FYTTEIASKFTFNLF-CLALKNAFQTFRWSIFIKGFL 2238 Query 1420 LICTTGLLLSSLYYLFLFHQVLTSDVMLDGAE------GMLATYRELRSYLGIHSLCDGM 1473 ++ T L ++ FL+ V+ SD L G + + +++ G+ ++CD Sbjct 2239 VVATVFLF----WFNFLYINVIFSDFYLPNISVFPIFVGRIVMW--IKATFGLVTICD-- 2290 Query 1474 VEAYRNVSYDVNDFCSNRSALCNWCLIGQDSLTRYSAFQMIQTHVTSYVI--NIDWVWFV 1531 Y + N S +C C G D L Y+A +Q V V+ + V + Sbjct 2291 --FYSKLGVGFTSHFCNGSFICELCHSGFDMLDTYAAIDFVQYEVDRRVLFDYVSLVKLI 2348 Query 1532 MEFALAYVLYTSTFNVLLLVVSSQYFFSYTGAFVNWRSYNYLVSGYFFCVTHIPLLGLVR 1591 +E + Y LYT F L ++ Q F ++ + ++L+ F +P L+R Sbjct 2349 VELVIGYSLYTVWFYPLFCLIGLQLFTTWLPDLFMLETMHWLIRFIVFVANMLPAFVLLR 2408 Query 1592 IYNFLACLWFLRRFYNHVINGCKDTACLLCYKRNRLTRVEASTVVCGSKRTFYIVANGGT 1651 Y + ++ + F H++ GC CL CYKRN RV+ ST+V G R + I ANGGT Sbjct 2409 FYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVIRYYDITANGGT 2468 Query 1652 SFCCRHNWNCVDCDTAGIGNTFICEEVANDLTTSLRRLVKPTDKSHYYVESVTVKDSVVQ 1711 FC +H WNC +C + GNTFI E A +L+ L+R V PTD SHY V + +++ Sbjct 2469 GFCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVVTDIKQVGCMMR 2528 Query 1712 LHYSREGASCYERYPLCYFTNLDKLKFKEVCKTPTGIPEHNFLIYDSSDRGQENLARSAC 1771 L Y R+G Y+ F +++ L +V P SD + N +A Sbjct 2529 LFYDRDGQRVYDDVDASLFVDINNLLHSKVKVVPNLYVVVV-----ESDADRANFL-NAV 2582 Query 1772 VYYSQVLSKPMLLVDSNMVTTVGDSREIASKMLDSYVNSFISLFGVNRDKLDKLVATARD 1831 V+Y+Q L +P+LLVD ++TT + + M D YV++F+S F V+R + V A Sbjct 2583 VFYAQSLYRPILLVDKKLITTACNGISVTQIMFDVYVDTFMSHFDVDRKSFNNFVNIAHA 2642 Query 1832 CVKRGDDFQTVIKTFTDAARGPAGVESDVETSSIVDALQYAYKHDLQLTTEGFNNYVPSY 1891 ++ G + V+ TF R ++SDVET I ++ A L+ T E +NN VP+Y Sbjct 2643 SLREGVQLEKVLDTFVGCVRKCCSIDSDVETRFITKSMISAVAAGLEFTDENYNNLVPTY 2702 Query 1892 IKPDSVATADLGCLIDLNAASVNQTSIRNANGACIWNSSDYMKLSDSLKRQIRIACRKCN 1951 +K D++ ADLG LI A V + AN +CIW + +L+ L+ +++ AC K Sbjct 2703 LKSDNIVAADLGVLIQNGAKHVQGNVAKVANISCIWFIDAFNQLTADLQHKLKKACVKTG 2762 Query 1952 IPFRLTTSRLRSADNILSVKFS 1973 + +LT ++ ++ IL+ FS Sbjct 2763 LKLKLTFNKQEASVPILTTPFS 2784 Range 2: 1302 to 1462 Score:106 bits(264), Expect:1e-22, Method:Compositional matrix adjust., Identities:66/161(41%), Positives:88/161(54%), Gaps:2/161(1%) Query 336 LKNFKHIVLNNDVTLVFGDAIAVARATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQA 395 L + + +V V GD I VAR + ++VN AN H+ HGGG+A AI A+G Sbjct 1302 LAQLYGLCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIAVAAGKKFSK 1361 Query 396 ESDDYVNFYGPLNVGDSTLLKGHGLATGILHVVGPDARAN--QDIQLLKRCYKAFNKYPL 453 E+ V G VGD + G L IL++VGPDAR + Q LL R YK N Y Sbjct 1362 ETAAMVKSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARAYKHLNNYDC 1421 Query 454 VVSPLISAGIFCVEPRVSLEYLLSVVHTKTYVVVNSEKVYN 494 +S LISAGIF V VSL YLL VV + +V N+++ ++ Sbjct 1422 CLSTLISAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFD 1462 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Human coronavirus HKU1 (isolate N2)] Sequence ID: P0C6X3.1 Length: 7152 Range 1: 1620 to 2804 Score:452 bits(1162), Expect:8e-129, Method:Compositional matrix adjust., Identities:361/1282(28%), Positives:592/1282(46%), Gaps:113/1282(8%) Query 708 KNVDVLVTIDGVNFRTVVLNNTTTYRVQLGSVFYKGSDISDTIPTEKMSGEAVYLADNLS 767 K +DVL+T+DGVNF+++ L + LG+VF G D++ ++ + + +Y +NLS Sbjct 1620 KKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENLS 1679 Query 768 EAEKAVLSEVYGTADTAFLHRYYSLLALVKKWKYTVHDGVKSLKLNSNNCYVNVTMLMLD 827 A+ + + +G D L YY+ L V KW V+ S + + NNCYVNV LML Sbjct 1680 LADISAVQSSFG-FDQQQLLAYYNFLT-VCKWSVVVNGPFFSFEQSHNNCYVNVACLMLQ 1737 Query 828 MLKEIKFIVPALQAAYLKHKGGDSTEFIALIMAYGDCTYGEPDDASRLLHTILSKAELTT 887 + +KF Q A+ + + G +AL++A G + EP DA+ + +L +A+L+ Sbjct 1738 HI-NLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLS- 1795 Query 888 QAKMVWRQWCNVCGVQDTTTTGLKACIYVGMNSLDELHATHEECCQCGDVRKRQLVEHNA 947 A C+ CG++ + G+ A ++ G + +L ++ C C R + N Sbjct 1796 GAICELELICD-CGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAG-RIVHCTKLNV 1853 Query 948 PWLLLSGLNEAKVMTPTSQSAGPDYTAFNVFQGVETSVGHYLHVRVKDNLLYKYDSGSLS 1007 P+L+ S TP S+ D A N+F GV VGHY H++ + YD+ S+ Sbjct 1854 PFLICSN-------TPLSKDLPDDVVAANMFMGV--GVGHYTHLKCGSPYQH-YDACSVK 1903 Query 1008 KTSDMKCKMTDVYYPKQRYSADCNVVV-YSLDGNTWADVDPDLSAFYMKDGKYFTKKPVI 1066 K + + +TD Y K +++ Y LD +PDLS +Y +GKY+TK P+I Sbjct 1904 KYTGVSGCLTDCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYTK-PII 1962 Query 1067 --EYSPATILSGSVYTNSCLVGHDGTIGSDAISSSFNNLLGFDNSKP-VSKKLTYSFFPD 1123 ++ P + G VYTN LVGHD I + N+ LGF+ P V K+T +P Sbjct 1963 KAQFKPFAKVDG-VYTNFKLVGHD-------ICAQLNDKLGFNVDLPFVEYKVT--VWPV 2012 Query 1124 FEGDVILTEYSTYDPIYKNGAMLHGKPILWVNNSKFD-SALNKFNRATLRQVYDIAPVTL 1182 GDV+L Y Y G GKP++W+ + + ++L FN+ + + Sbjct 2013 ATGDVVLASDDLYVKRYFKGCETFGKPVIWLCHDEASLNSLTYFNKPSFKS--------- 2063 Query 1183 ENKYTVLQDNQIQQVEVEAPKEDAKPQSPVQVAEDIDNKLPIIKCKGLKKPFVKDGYSFV 1242 EN+Y+VL + + + E + + +S + E +K KG++K + V Sbjct 2064 ENRYSVLSVDSVSE-ESQGNVVTSVMESQISTKE--------VKLKGVRKTVKIEDAIIV 2114 Query 1243 NDPQG-VNVIDTLGIDDLRALYVDRNLRLIVLKENNWSALFNIHTVEKGDLSVIAASGSI 1301 ND + V+ +L + D+ +Y+ +V N S L TV Sbjct 2115 NDENSSIKVVKSLSLVDVWDMYL-TGCDYVVWVANELSRLVKSPTV-------------- 2159 Query 1302 TRRVKILLGASSLFAQFASVTVNVTTAMGKALGRMTRNVITNTGIIGQGFALLKMLLILP 1361 R I G + ++ +++ + + I GF LK L I Sbjct 2160 --REYIRYGIKPI-----TIPIDLLCLRDDNQTLLVPKIFKARAIEFYGF--LKWLFIYV 2210 Query 1362 FTFWKSKNQSTVKVEVGALRTAGIVTTNVVKQCASAAYDVLVVK--FKRIDWKSTLRLLF 1419 F+ N T+ TT + + + L +K F+ W ++ Sbjct 2211 FSLLHFTNDKTI-----------FYTTEIASKFTFNLF-CLALKNAFQTFRWSIFIKGFL 2258 Query 1420 LICTTGLLLSSLYYLFLFHQVLTSDVMLDGAE------GMLATYRELRSYLGIHSLCDGM 1473 ++ T L ++ FL+ V+ SD L G + + +++ G+ ++CD Sbjct 2259 VVATVFLF----WFNFLYINVIFSDFYLPNISVFPIFVGRIVMW--IKATFGLVTICD-- 2310 Query 1474 VEAYRNVSYDVNDFCSNRSALCNWCLIGQDSLTRYSAFQMIQTHVTSYVI--NIDWVWFV 1531 Y + N S +C C G D L Y+A +Q V V+ + V + Sbjct 2311 --FYSKLGVGFTSHFCNGSFICELCYSGFDMLDTYAAIDFVQYEVDRRVLFDYVSLVKLI 2368 Query 1532 MEFALAYVLYTSTFNVLLLVVSSQYFFSYTGAFVNWRSYNYLVSGYFFCVTHIPLLGLVR 1591 +E + Y LYT F L ++ Q F ++ + ++L+ F +P L+R Sbjct 2369 VELVIGYSLYTVWFYPLFCLIGLQLFTTWLPDLFMLETMHWLIRFIVFVANMLPAFVLLR 2428 Query 1592 IYNFLACLWFLRRFYNHVINGCKDTACLLCYKRNRLTRVEASTVVCGSKRTFYIVANGGT 1651 Y + ++ + F H++ GC CL CYKRN RV+ ST+V G R + I ANGGT Sbjct 2429 FYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVIRYYDITANGGT 2488 Query 1652 SFCCRHNWNCVDCDTAGIGNTFICEEVANDLTTSLRRLVKPTDKSHYYVESVTVKDSVVQ 1711 FC +H WNC +C + GNTFI E A +L+ L+R V PTD SHY V + +++ Sbjct 2489 GFCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVVTDIKQVGCMMR 2548 Query 1712 LHYSREGASCYERYPLCYFTNLDKLKFKEVCKTPTGIPEHNFLIYDSSDRGQENLARSAC 1771 L Y R+G Y+ F +++ L +V P SD + N +A Sbjct 2549 LFYDRDGQRVYDDVDASLFVDINNLLHSKVKVVPNLYVVVV-----ESDADRANFL-NAV 2602 Query 1772 VYYSQVLSKPMLLVDSNMVTTVGDSREIASKMLDSYVNSFISLFGVNRDKLDKLVATARD 1831 V+Y+Q L +P+LLVD ++TT + + M D YV++F+S F V+R + V A Sbjct 2603 VFYAQSLYRPILLVDKKLITTACNGISVTQTMFDVYVDTFMSHFDVDRKSFNNFVNIAHA 2662 Query 1832 CVKRGDDFQTVIKTFTDAARGPAGVESDVETSSIVDALQYAYKHDLQLTTEGFNNYVPSY 1891 ++ G + V+ TF R ++SDVET I ++ A L+ T E +NN VP+Y Sbjct 2663 SLREGVQLEKVLDTFVGCVRKCCSIDSDVETRFITKSMISAVAAGLEFTDENYNNLVPTY 2722 Query 1892 IKPDSVATADLGCLIDLNAASVNQTSIRNANGACIWNSSDYMKLSDSLKRQIRIACRKCN 1951 +K D++ ADLG LI A V + AN +CIW + +L+ L+ +++ AC K Sbjct 2723 LKSDNIVAADLGVLIQNGAKHVQGNVAKAANISCIWFIDTFNQLTADLQHKLKKACVKTG 2782 Query 1952 IPFRLTTSRLRSADNILSVKFS 1973 + +LT ++ ++ IL+ FS Sbjct 2783 LKLKLTFNKQEASVPILTTPFS 2804 Range 2: 1333 to 1482 Score:106 bits(264), Expect:1e-22, Method:Compositional matrix adjust., Identities:65/150(43%), Positives:85/150(56%), Gaps:2/150(1%) Query 347 DVTLVFGDAIAVARATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDYVNFYGP 406 +V V GD I VAR + ++VN AN H+ HGGG+A AI A+G E+ V G Sbjct 1333 NVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIAVAAGKKFSKETAAMVKSKGV 1392 Query 407 LNVGDSTLLKGHGLATGILHVVGPDARAN--QDIQLLKRCYKAFNKYPLVVSPLISAGIF 464 VGD + G L IL++VGPDAR + Q LL R YK N Y +S LISAGIF Sbjct 1393 CQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARAYKHLNNYDCCLSTLISAGIF 1452 Query 465 CVEPRVSLEYLLSVVHTKTYVVVNSEKVYN 494 V VSL YLL VV + +V N+++ ++ Sbjct 1453 SVPADVSLTYLLGVVDKQVILVSNNKEDFD 1482 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Human coronavirus HKU1 (isolate N1)] Sequence ID: P0C6X2.1 Length: 7182 Range 1: 1650 to 2834 Score:451 bits(1160), Expect:1e-128, Method:Compositional matrix adjust., Identities:361/1282(28%), Positives:591/1282(46%), Gaps:113/1282(8%) Query 708 KNVDVLVTIDGVNFRTVVLNNTTTYRVQLGSVFYKGSDISDTIPTEKMSGEAVYLADNLS 767 K +DVL+T+DGVNF+++ L + LG+VF G D++ ++ + + +Y +NLS Sbjct 1650 KKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENLS 1709 Query 768 EAEKAVLSEVYGTADTAFLHRYYSLLALVKKWKYTVHDGVKSLKLNSNNCYVNVTMLMLD 827 A+ + + +G D L YY+ L V KW V+ S + + NNCYVNV LML Sbjct 1710 LADISAVQSSFG-FDQQQLLAYYNFLT-VCKWSVVVNGPFFSFEQSHNNCYVNVACLMLQ 1767 Query 828 MLKEIKFIVPALQAAYLKHKGGDSTEFIALIMAYGDCTYGEPDDASRLLHTILSKAELTT 887 + +KF Q A+ + + G +AL++A G + EP DA+ + +L +A+L+ Sbjct 1768 HI-NLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLS- 1825 Query 888 QAKMVWRQWCNVCGVQDTTTTGLKACIYVGMNSLDELHATHEECCQCGDVRKRQLVEHNA 947 A C+ CG++ + G+ A ++ G + +L ++ C C R + N Sbjct 1826 GAICELELICD-CGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAG-RIVHCTKLNV 1883 Query 948 PWLLLSGLNEAKVMTPTSQSAGPDYTAFNVFQGVETSVGHYLHVRVKDNLLYKYDSGSLS 1007 P+L+ S TP S+ D A N+F GV VGHY H++ + YD+ S+ Sbjct 1884 PFLICSN-------TPLSKDLPDDVVAANMFMGV--GVGHYTHLKCGSPYQH-YDACSVK 1933 Query 1008 KTSDMKCKMTDVYYPKQRYSADCNVVV-YSLDGNTWADVDPDLSAFYMKDGKYFTKKPVI 1066 K + + +TD Y K +++ Y LD +PDLS +Y +GKY+TK P+I Sbjct 1934 KYTGVSGCLTDCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYTK-PII 1992 Query 1067 --EYSPATILSGSVYTNSCLVGHDGTIGSDAISSSFNNLLGFDNSKP-VSKKLTYSFFPD 1123 ++ P + G VYTN LVGHD I + N+ LGF+ P V K+T +P Sbjct 1993 KAQFKPFAKVDG-VYTNFKLVGHD-------ICAQLNDKLGFNVDLPFVEYKVT--VWPV 2042 Query 1124 FEGDVILTEYSTYDPIYKNGAMLHGKPILWVNNSKFD-SALNKFNRATLRQVYDIAPVTL 1182 GDV+L Y Y G GKP++W + + ++L FN+ + + Sbjct 2043 ATGDVVLASDDLYVKRYFKGCETFGKPVIWFCHDEASLNSLTYFNKPSFKS--------- 2093 Query 1183 ENKYTVLQDNQIQQVEVEAPKEDAKPQSPVQVAEDIDNKLPIIKCKGLKKPFVKDGYSFV 1242 EN+Y+VL + + + E + + +S + E +K KG++K + V Sbjct 2094 ENRYSVLSVDSVSE-ESQGNVVTSVMESQISTKE--------VKLKGVRKTVKIEDAIIV 2144 Query 1243 NDPQG-VNVIDTLGIDDLRALYVDRNLRLIVLKENNWSALFNIHTVEKGDLSVIAASGSI 1301 ND + V+ +L + D+ +Y+ +V N S L TV Sbjct 2145 NDENSSIKVVKSLSLVDVWDMYL-TGCDYVVWVANELSRLVKSPTV-------------- 2189 Query 1302 TRRVKILLGASSLFAQFASVTVNVTTAMGKALGRMTRNVITNTGIIGQGFALLKMLLILP 1361 R I G + ++ +++ + + I GF LK L I Sbjct 2190 --REYIRYGIKPI-----TIPIDLLCLRDDNQTLLVPKIFKARAIEFYGF--LKWLFIYV 2240 Query 1362 FTFWKSKNQSTVKVEVGALRTAGIVTTNVVKQCASAAYDVLVVK--FKRIDWKSTLRLLF 1419 F+ N T+ TT + + + L +K F+ W ++ Sbjct 2241 FSLLHFTNDKTI-----------FYTTEIASKFTFNLF-CLALKNAFQTFRWSIFIKGFL 2288 Query 1420 LICTTGLLLSSLYYLFLFHQVLTSDVMLDGAE------GMLATYRELRSYLGIHSLCDGM 1473 ++ T L ++ FL+ V+ SD L G + + +++ G+ ++CD Sbjct 2289 VVATVFLF----WFNFLYINVIFSDFYLPNISVFPIFVGRIVMW--IKATFGLVTICD-- 2340 Query 1474 VEAYRNVSYDVNDFCSNRSALCNWCLIGQDSLTRYSAFQMIQTHVTSYVI--NIDWVWFV 1531 Y + N S +C C G D L Y+A +Q V V+ + V + Sbjct 2341 --FYSKLGVGFTSHFCNGSFICELCHSGFDMLDTYAAIDFVQYEVDRRVLFDYVSLVKLI 2398 Query 1532 MEFALAYVLYTSTFNVLLLVVSSQYFFSYTGAFVNWRSYNYLVSGYFFCVTHIPLLGLVR 1591 +E + Y LYT F L ++ Q F ++ + ++L+ F +P L+R Sbjct 2399 VELVIGYSLYTVWFYPLFCLIGLQLFTTWLPDLFMLETMHWLIRFIVFVANMLPAFVLLR 2458 Query 1592 IYNFLACLWFLRRFYNHVINGCKDTACLLCYKRNRLTRVEASTVVCGSKRTFYIVANGGT 1651 Y + ++ + F H++ GC CL CYKRN RV+ ST+V G R + I ANGGT Sbjct 2459 FYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVIRYYDITANGGT 2518 Query 1652 SFCCRHNWNCVDCDTAGIGNTFICEEVANDLTTSLRRLVKPTDKSHYYVESVTVKDSVVQ 1711 FC +H WNC +C + GNTFI E A +L+ L+R V PTD SHY V + +++ Sbjct 2519 GFCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVVTDIKQVGCMMR 2578 Query 1712 LHYSREGASCYERYPLCYFTNLDKLKFKEVCKTPTGIPEHNFLIYDSSDRGQENLARSAC 1771 L Y R+G Y+ F +++ L +V P SD + N +A Sbjct 2579 LFYDRDGQRVYDDVDASLFVDINNLLHSKVKVVPNLYVVVV-----ESDADRANFL-NAV 2632 Query 1772 VYYSQVLSKPMLLVDSNMVTTVGDSREIASKMLDSYVNSFISLFGVNRDKLDKLVATARD 1831 V+Y+Q L +P+LLVD ++TT + + M D YV++F+S F V+R + V A Sbjct 2633 VFYAQSLYRPILLVDKKLITTACNGISVTQTMFDVYVDTFMSHFDVDRKSFNNFVNIAHA 2692 Query 1832 CVKRGDDFQTVIKTFTDAARGPAGVESDVETSSIVDALQYAYKHDLQLTTEGFNNYVPSY 1891 ++ G + V+ TF R ++SDVET I ++ A L+ T E +NN VP+Y Sbjct 2693 SLREGVQLEKVLDTFVGCVRKCCSIDSDVETRFITKSMISAVAAGLEFTDENYNNLVPTY 2752 Query 1892 IKPDSVATADLGCLIDLNAASVNQTSIRNANGACIWNSSDYMKLSDSLKRQIRIACRKCN 1951 +K D++ ADLG LI A V + AN +CIW + +L+ L+ +++ AC K Sbjct 2753 LKSDNIVAADLGVLIQNGAKHVQGNVAKAANISCIWFIDAFNQLTADLQHKLKKACVKTG 2812 Query 1952 IPFRLTTSRLRSADNILSVKFS 1973 + +LT ++ ++ IL+ FS Sbjct 2813 LKLKLTFNKQEASVPILTTPFS 2834 Range 2: 1363 to 1512 Score:106 bits(264), Expect:1e-22, Method:Compositional matrix adjust., Identities:65/150(43%), Positives:85/150(56%), Gaps:2/150(1%) Query 347 DVTLVFGDAIAVARATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDYVNFYGP 406 +V V GD I VAR + ++VN AN H+ HGGG+A AI A+G E+ V G Sbjct 1363 NVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIAVAAGKKFSKETAAMVKSKGV 1422 Query 407 LNVGDSTLLKGHGLATGILHVVGPDARAN--QDIQLLKRCYKAFNKYPLVVSPLISAGIF 464 VGD + G L IL++VGPDAR + Q LL R YK N Y +S LISAGIF Sbjct 1423 CQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARAYKHLNNYDCCLSTLISAGIF 1482 Query 465 CVEPRVSLEYLLSVVHTKTYVVVNSEKVYN 494 V VSL YLL VV + +V N+++ ++ Sbjct 1483 SVPADVSLTYLLGVVDKQVILVSNNKEDFD 1512 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Human coronavirus HKU1 (isolate N5)] Sequence ID: P0C6X4.1 Length: 7132 Range 1: 1600 to 2784 Score:450 bits(1157), Expect:4e-128, Method:Compositional matrix adjust., Identities:361/1282(28%), Positives:591/1282(46%), Gaps:113/1282(8%) Query 708 KNVDVLVTIDGVNFRTVVLNNTTTYRVQLGSVFYKGSDISDTIPTEKMSGEAVYLADNLS 767 K +DVL+T+DGVNF+++ L + LG+VF G D++ ++ + + +Y +NLS Sbjct 1600 KKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENLS 1659 Query 768 EAEKAVLSEVYGTADTAFLHRYYSLLALVKKWKYTVHDGVKSLKLNSNNCYVNVTMLMLD 827 A+ + + +G D L YY+ L V KW V+ S + + NNCYVNV LML Sbjct 1660 LADISAVQSSFG-FDQQQLLAYYNFLT-VCKWSVVVNGPFFSFEQSHNNCYVNVACLMLQ 1717 Query 828 MLKEIKFIVPALQAAYLKHKGGDSTEFIALIMAYGDCTYGEPDDASRLLHTILSKAELTT 887 + +KF Q A+ + + G +AL++A G + EP DA+ + +L +A+L+ Sbjct 1718 HI-NLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLS- 1775 Query 888 QAKMVWRQWCNVCGVQDTTTTGLKACIYVGMNSLDELHATHEECCQCGDVRKRQLVEHNA 947 A C+ CG++ + G+ A ++ G + +L ++ C C R + N Sbjct 1776 GAICELELICD-CGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAG-RIVHCTKLNV 1833 Query 948 PWLLLSGLNEAKVMTPTSQSAGPDYTAFNVFQGVETSVGHYLHVRVKDNLLYKYDSGSLS 1007 P+L+ S TP S+ D A N+F GV VGHY H++ + YD+ S+ Sbjct 1834 PFLICSN-------TPLSKDLPDDVVAANMFMGV--GVGHYTHLKCGSPYQH-YDACSVK 1883 Query 1008 KTSDMKCKMTDVYYPKQRYSADCNVVV-YSLDGNTWADVDPDLSAFYMKDGKYFTKKPVI 1066 K + + +TD Y K +++ Y LD +PDLS +Y +GKY+TK P+I Sbjct 1884 KYTGVSGCLTDCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYTK-PII 1942 Query 1067 --EYSPATILSGSVYTNSCLVGHDGTIGSDAISSSFNNLLGFDNSKP-VSKKLTYSFFPD 1123 ++ P + G VYTN LVGHD I + N+ LGF+ P V K+T +P Sbjct 1943 KAQFKPFAKVDG-VYTNFKLVGHD-------ICAQLNDKLGFNVDLPFVEYKVT--VWPV 1992 Query 1124 FEGDVILTEYSTYDPIYKNGAMLHGKPILWVNNSKFD-SALNKFNRATLRQVYDIAPVTL 1182 GDV+L Y Y G GKP++W + + ++L FN+ + + Sbjct 1993 ATGDVVLASDDLYVKRYFKGCETFGKPVIWFCHDEASLNSLTYFNKPSFKS--------- 2043 Query 1183 ENKYTVLQDNQIQQVEVEAPKEDAKPQSPVQVAEDIDNKLPIIKCKGLKKPFVKDGYSFV 1242 EN+Y+VL + + + E + + +S + E +K KG++K + V Sbjct 2044 ENRYSVLSVDSVSE-ESQGNVVTSVMESQISTKE--------VKLKGVRKTVKIEDAIIV 2094 Query 1243 NDPQG-VNVIDTLGIDDLRALYVDRNLRLIVLKENNWSALFNIHTVEKGDLSVIAASGSI 1301 ND + V+ +L + D+ +Y+ +V N S L TV Sbjct 2095 NDENSSIKVVKSLSLVDVWDMYL-TGCDYVVWVANELSRLVKSPTV-------------- 2139 Query 1302 TRRVKILLGASSLFAQFASVTVNVTTAMGKALGRMTRNVITNTGIIGQGFALLKMLLILP 1361 R I G + ++ +++ + + I GF LK L I Sbjct 2140 --REYIRYGIKPI-----TIPIDLLCLRDDNQTLLVPKIFKARAIEFYGF--LKWLFIYV 2190 Query 1362 FTFWKSKNQSTVKVEVGALRTAGIVTTNVVKQCASAAYDVLVVK--FKRIDWKSTLRLLF 1419 F+ N T+ TT + + + L +K F+ W ++ Sbjct 2191 FSLLHFTNDKTI-----------FYTTEIASKFTFNLF-CLALKNAFQTFRWSIFIKGFL 2238 Query 1420 LICTTGLLLSSLYYLFLFHQVLTSDVMLDGAE------GMLATYRELRSYLGIHSLCDGM 1473 ++ T L ++ FL+ V+ SD L G + + +++ G+ ++CD Sbjct 2239 VVATVFLF----WFNFLYINVIFSDFYLPNISVFPIFVGRIVMW--IKATFGLVTICD-- 2290 Query 1474 VEAYRNVSYDVNDFCSNRSALCNWCLIGQDSLTRYSAFQMIQTHVTSYVI--NIDWVWFV 1531 Y + N S +C C G D L Y+A +Q V V+ + V + Sbjct 2291 --FYSKLGVGFTSHFCNGSFICELCHSGFDMLDTYAAIDFVQYEVDRRVLFDYVSLVKLI 2348 Query 1532 MEFALAYVLYTSTFNVLLLVVSSQYFFSYTGAFVNWRSYNYLVSGYFFCVTHIPLLGLVR 1591 +E + Y LYT F L ++ Q F ++ + ++L+ F +P L+R Sbjct 2349 VELVIGYSLYTVWFYPLFCLIGLQLFTTWLPDLFMLETMHWLIRFIVFVANMLPAFVLLR 2408 Query 1592 IYNFLACLWFLRRFYNHVINGCKDTACLLCYKRNRLTRVEASTVVCGSKRTFYIVANGGT 1651 Y + ++ + F H++ GC CL CYKRN RV+ ST+V G R + I ANGGT Sbjct 2409 FYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVIRYYDITANGGT 2468 Query 1652 SFCCRHNWNCVDCDTAGIGNTFICEEVANDLTTSLRRLVKPTDKSHYYVESVTVKDSVVQ 1711 FC +H WNC +C + GNTFI E A +L+ L+R V PTD SHY V + +++ Sbjct 2469 GFCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVVTDIKQVGCMMR 2528 Query 1712 LHYSREGASCYERYPLCYFTNLDKLKFKEVCKTPTGIPEHNFLIYDSSDRGQENLARSAC 1771 L Y R+G Y+ F +++ L +V P SD + N +A Sbjct 2529 LFYDRDGQRVYDDVDASLFVDINNLLHSKVKVVPNLYVVVV-----ESDADRANFL-NAV 2582 Query 1772 VYYSQVLSKPMLLVDSNMVTTVGDSREIASKMLDSYVNSFISLFGVNRDKLDKLVATARD 1831 V+Y+Q L +P+LLVD ++TT + + M D YV++F+S F V+R + V A Sbjct 2583 VFYAQSLYRPILLVDKKLITTACNGISVTQIMFDVYVDTFMSHFDVDRKSFNNFVNIAHA 2642 Query 1832 CVKRGDDFQTVIKTFTDAARGPAGVESDVETSSIVDALQYAYKHDLQLTTEGFNNYVPSY 1891 ++ G + V+ TF R ++SDVET I ++ A L+ T E +NN VP+Y Sbjct 2643 SLREGVQLEKVLDTFVGCVRKCCSIDSDVETRFITKSMISAVAAGLEFTDENYNNLVPTY 2702 Query 1892 IKPDSVATADLGCLIDLNAASVNQTSIRNANGACIWNSSDYMKLSDSLKRQIRIACRKCN 1951 +K D++ ADLG LI A V + AN +CIW + +L+ L+ +++ AC K Sbjct 2703 LKSDNIVAADLGVLIQNGAKHVQGNVAKVANISCIWFIDAFNQLTADLQHKLKKACVKTG 2762 Query 1952 IPFRLTTSRLRSADNILSVKFS 1973 + +LT ++ ++ IL+ FS Sbjct 2763 LKLKLTFNKQEASVPILTTPFS 2784 Range 2: 1313 to 1462 Score:106 bits(264), Expect:1e-22, Method:Compositional matrix adjust., Identities:65/150(43%), Positives:85/150(56%), Gaps:2/150(1%) Query 347 DVTLVFGDAIAVARATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDYVNFYGP 406 +V V GD I VAR + ++VN AN H+ HGGG+A AI A+G E+ V G Sbjct 1313 NVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIAVAAGKKFSKETAAMVKSKGV 1372 Query 407 LNVGDSTLLKGHGLATGILHVVGPDARAN--QDIQLLKRCYKAFNKYPLVVSPLISAGIF 464 VGD + G L IL++VGPDAR + Q LL R YK N Y +S LISAGIF Sbjct 1373 CQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARAYKHLNNYDCCLSTLISAGIF 1432 Query 465 CVEPRVSLEYLLSVVHTKTYVVVNSEKVYN 494 V VSL YLL VV + +V N+++ ++ Sbjct 1433 SVPADVSLTYLLGVVDKQVILVSNNKEDFD 1462 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Human coronavirus 229E] Sequence ID: P0C6U2.1 Length: 4085 Range 1: 2015 to 2485 Score:165 bits(417), Expect:1e-40, Method:Compositional matrix adjust., Identities:134/517(26%), Positives:241/517(46%), Gaps:47/517(9%) Query 1464 LGIHSLCDGMVEAYRNVSYDVNDFCSNRSALCNWCLIGQDSLTRYSAFQMIQTHVTSYVI 1523 G + C V Y ++ +D+C + S C CL G L+++S ++ H+T + Sbjct 2015 FGPFNFCSETVNGYAKSNFVKDDYC-DGSLGCKMCLFGYQELSQFSHLDVVWKHITDPLF 2073 Query 1524 NIDWVWFVMEFALAYVLYTSTFNVLLLVVSSQYFFSYTGAFVNWRSYNYLVSGYFFCVTH 1583 + + VM L + + LL +Q S G F+ ++ N+ + F V Sbjct 2074 SNMQPFIVM--VLLLIFGDNYLRCFLLYFVAQ-MISTVGVFLGYKETNWFLHFIPFDVIC 2130 Query 1584 IPLLGLVRIYNFLACLWFLRRFYNHVINGCKDTACLLCYKRNRLTRVEASTVVCGSKRTF 1643 LL V + ++ F HV+ GC++ C+ C K RL R +T+V G +R+F Sbjct 2131 DELLVTVIVIKVIS-------FVRHVLFGCENPDCIACSKSARLKRFPVNTIVNGVQRSF 2183 Query 1644 YIVANGGTSFCCRHNWNCVDCDTAGIGNTFICEEVANDLTTSLRRLVKPTDKSHYYVESV 1703 Y+ ANGG+ FC +H + CVDCD+ G G+TFI EV+ +L + V+PT ++ ++ V Sbjct 2184 YVNANGGSKFCKKHRFFCVDCDSYGYGSTFITPEVSRELGNITKTNVQPTGPAYVMIDKV 2243 Query 1704 TVKDSVVQLHYSREGASCYERYPLCYFTNLDKLKFKEVCKTPTGIPEHNFLIYDSSDRGQ 1763 ++ +L+ SC + + K KEV K + + F++++++ Sbjct 2244 EFENGFYRLY------SCETFWRYNFDITESKYSCKEVFKNCNVLDD--FIVFNNNGTNV 2295 Query 1764 ENLARSACVYYSQVLSKPMLLVDSNMVTTVGDSREIASKMLDSYVNSFISLFGVNRDKLD 1823 + ++A VY+SQ+L +P+ LVDS +++T+ S + + +Y++ + FG + + Sbjct 2296 TQV-KNASVYFSQLLCRPIKLVDSELLSTL--SVDFNGVLHKAYIDVLRNSFGKDLNANM 2352 Query 1824 KLVATARDCVKRGDDFQTVIKTFTDAARGPAGVESDVETSSIVDALQYAYKHDLQLTTEG 1883 L R A G + SD E +S A+ A++ D+ L+ Sbjct 2353 SLAECKR-------------------ALGLS--ISDHEFTS---AISNAHRCDVLLSDLS 2388 Query 1884 FNNYVPSYIKPDSVATA-DLGCLIDLNAASVNQTSIRNANGACIWNSSDYMKLSDSLKRQ 1942 FNN+V SY KP+ +A DL C + A VN + +W++ D+ LS ++ Sbjct 2389 FNNFVSSYAKPEEKLSAYDLACCMRAGAKVVNANVLTKDQTPIVWHAKDFNSLSAEGRKY 2448 Query 1943 IRIACRKCNIPFRLTTSRLRSADNILSVKFSATKLSG 1979 I + + F LT + ++ I + A + +G Sbjct 2449 IVKTSKAKGLTFLLTINENQAVTQIPATSIVAKQGAG 2485 Range 2: 1262 to 1462 Score:76.6 bits(187), Expect:1e-13, Method:Compositional matrix adjust., Identities:61/206(30%), Positives:97/206(47%), Gaps:27/206(13%) Query 330 PKAENPLK-NFKHIVLNNDVTLVFGDAIAVARATEDCILVNAANTHLKHGGGIAAAIDRA 388 PK E +K +++++V GD V + +VNAAN +L HGGG+A A+D Sbjct 1262 PKEEFVVKEKLNAFLVHDNVAFYQGDVDTVVNGVDFDFIVNAANENLAHGGGLAKALDVY 1321 Query 389 SGGLVQAESDDYVNFYGPLNVGDSTLLKGHGLATGILHVVGPDARANQDIQLLKRCYKAF 448 + G +Q S +++ G + VG +++ L I +VVGP + + LL + Y Sbjct 1322 TKGKLQRLSKEHIGLAGKVKVGTGVMVECDSLR--IFNVVGP-RKGKHERDLLIKAYNTI 1378 Query 449 NK---YPLVVSPLISAGIFCVEPRVSLEYLLSVVHTKTYVV------------------V 487 N PL +P++S GIF ++ SLE LL V +TK V V Sbjct 1379 NNEQGTPL--TPILSCGIFGIKLETSLEVLLDVCNTKEVKVFVYTDTEVCKVKDFVSGLV 1436 Query 488 NSEKVYNDLAAPKPPTGLTYSHEGWR 513 N +KV PKP + + + + +R Sbjct 1437 NVQKVEQPKIEPKPVSVIKVAPKPYR 1462 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Papain-like protease; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Avian infectious bronchitis virus (strain M41)] Sequence ID: P0C6V5.1 Length: 3953 Range 1: 1546 to 2267 Score:164 bits(415), Expect:3e-40, Method:Compositional matrix adjust., Identities:202/832(24%), Positives:341/832(40%), Gaps:181/832(21%) Query 1219 DNKLPI-IKCKGLKKPF---VKDGYSF---------VNDPQGVNVIDTLGIDDLRALYVD 1265 D+KLP+ +K +G+K KDG+++ P V+D++ LRA++V+ Sbjct 1546 DSKLPLTLKVRGIKSVVDFRSKDGFTYKLTPDTDENSKTPVYYPVLDSI---SLRAIWVE 1602 Query 1266 RNLRLIVLKENNWSALFNIHTVEKGDLSVIAASGSI-----------------TRRV--- 1305 + +V N +S I T + S + I R+ Sbjct 1603 GSANFVVGHPNYYSKSLRIPTFWENAESFVKMGYKIDGVTMGLWRAEHLNKPNLERIFNI 1662 Query 1306 --KILLGASSLFAQFASVTVNVTTAMGKALGR-MTRNVITNT-GIIG---------QGFA 1352 K ++G+S + Q + V T + +G + RN+ G+ G Sbjct 1663 AKKAIVGSSVVTTQCGKILVKAATYVADKVGDGVVRNITDRIKGLCGFTRGHFEKKMSLQ 1722 Query 1353 LLKMLLILPFTFWKSKNQSTVKVEVGALRTAGIVTTNVVKQCASAAYDVLVVKFKRIDWK 1412 LK L+ F F K+ ++S V ++Y +++ K Sbjct 1723 FLKTLVFFFFYFLKASSKSLV-----------------------SSYKIVLCKVVF---- 1755 Query 1413 STLRLLFLICTTGLLLSSLYYLFLFHQVLTSDVMLDGAEGMLATYRELRSYLGIHSLCDG 1472 +TL +++ I T+ ++ F + D + +G SLC G Sbjct 1756 ATLLIVWFIYTSNPVV--------FTGIRVLDFLFEG------------------SLC-G 1788 Query 1473 MVEAYRNVSYDVNDFCSNRSALCNWCLIGQDSLTRYS-AFQMIQTHV-TSYVINIDWVWF 1530 Y S+DV +C+ C CL +DSL Y A+ + Q + + IN +W W Sbjct 1789 PYNDYGKDSFDVLRYCAGDFT-CRVCLHDRDSLHLYKHAYSVEQIYKDAASGINFNWNWL 1847 Query 1531 VMEFALAYVLYTSTFNVL-----LLVVSSQYFFSYTGAFVNW------RSYNYLVSGYFF 1579 + F + +V + F ++ LV+SS + G F++W +N++ +G++F Sbjct 1848 YLVFLILFVKPVAGFVIICYCVKYLVLSSTVLQTGVG-FLDWFVKTVFTHFNFMGAGFYF 1906 Query 1580 CVTHIPLLGLVRIYNFLACLWFLRRFYN--HVINGCKDTACLLCYKRNRLTRVEASTVVC 1637 W + Y H I CKD C +C + R R E S VV Sbjct 1907 --------------------WLFYKIYVQVHHILYCKDVTCEVCKRVARSNRQEVSVVVG 1946 Query 1638 GSKRTFYIVANGGTSFCCRHNWNCVDCDTAGIGNTFICEEVANDLTTSLRRLVKPTDKSH 1697 G K+ ++ N G +FC RHNW C +CD G NTF+ EVA +L+ L+R VKPT ++ Sbjct 1947 GRKQIVHVYTNSGYNFCKRHNWYCRNCDDYGHQNTFMSPEVAGELSEKLKRHVKPTAYAY 2006 Query 1698 YYVESVTVKDSVVQLHY-----SREGASCYERYPLCYFTNLDKLK----FKEVCKTPTGI 1748 + V V D V L Y ++ AS + C F+ D LK KE K I Sbjct 2007 HVVYEACVVDDFVNLKYKAAIPGKDNASSAVK---C-FSVTDFLKKAVFLKEALKCEQ-I 2061 Query 1749 PEHNFLIYDSSDRGQENLARSACVYYSQVLSKPMLLVDSNMVTTVGDSREIASKMLDSYV 1808 F++ ++ A++A VYY+Q L KP+L++D + + ++ ++D Sbjct 2062 SNDGFIVCNTQSAHALEEAKNAAVYYAQYLCKPILILDQALYEQL-IVEPVSKSVIDKVC 2120 Query 1809 NSFISLFGVNRDKLDKLVATARDCVKRGDDFQTVIKTFTDAARGPAGVESDVETSSIVDA 1868 + ++ V+ L+ T RD + + D E VD Sbjct 2121 SILSNIISVDTAALNYKAGTLRDAL--------------------LSITKDEEA---VDM 2157 Query 1869 LQYAYKHDLQLTTEGFNNYVPSY-IKPDSVATADLGCLIDLNAASVNQTSIRNANGACIW 1927 + + H+++ T +GF N +PSY + D + D G LI+ + AS+ ++NA +W Sbjct 2158 AIFCHNHEVEYTGDGFTNVIPSYGMDTDKLTPRDRGFLINAD-ASIANLRVKNAP-PVVW 2215 Query 1928 NSSDYMKLSDSLKRQIRIACRKCNIPFRLTTSRLRSADNILSVKFSATKLSG 1979 SD +KLSDS + + A K F +T S + + + K K +G Sbjct 2216 KFSDLIKLSDSCLKYLISATVKSGGRFFITKSGAKQVISCHTQKLLVEKKAG 2267 Range 2: 1175 to 1410 Score:69.7 bits(169), Expect:1e-11, Method:Compositional matrix adjust., Identities:73/259(28%), Positives:112/259(43%), Gaps:34/259(13%) Query 705 AQQKNVDVLVTIDGVNFRTVVLNNTTTYRVQLGSVFYKGSDISDTIPTEKMSGEAVYLAD 764 A K + +T DGV +R+VVL + Q G VF + + V+ AD Sbjct 1175 ATCKQKTIYLTEDGVKYRSVVLKPGDSLG-QFGQVFARN--------------KVVFSAD 1219 Query 765 NLSEAEKAVLSEVYGTADTAFLHRYYSLLA---------LVKKWKYTVHDGVKSLKLNSN 815 ++ + E + T D L YY L A L +KW D L+ Sbjct 1220 DVEDKEILFIP----TTDKTIL-EYYGLDAQKYVTYLQTLAQKWDVQYRDNFVILEWRDG 1274 Query 816 NCYVNVTMLMLDMLKEIKFIVPALQAAYLKHKGGDSTEFIALIMAYGDCTYGEPDDASRL 875 NC+++ +++L K I+F L A+ K GGD T+F+A A + G+ DA+ L Sbjct 1275 NCWISSAIVLLQAAK-IRF-KGFLAEAWAKLLGGDPTDFVAWCYASCNAKVGDFSDANWL 1332 Query 876 LHTILSKAELT-TQAKMVWRQWCNVCGVQDTTTTGLKACIY-VGMNSLDELHATHEECCQ 933 L + + T A + CN CGV+ GL+ACI V +L + C Sbjct 1333 LANLAEHFDADYTNALLKKCVSCN-CGVKSYELRGLEACIQPVRAPNLLHFKTQYSNCPT 1391 Query 934 CGDVRKRQLVEHNAPWLLL 952 CG +++E + P+LLL Sbjct 1392 CGASSTDEVIEASLPYLLL 1410 Range 3: 888 to 1147 Score:56.6 bits(135), Expect:1e-07, Method:Compositional matrix adjust., Identities:79/276(29%), Positives:122/276(44%), Gaps:38/276(13%) Query 220 AKANDCAEGMPALDSTETVSKLSVDTPVGDVTQDDATSSNATVISEDVHTATHSKGLVAV 279 +A D E + +ST +S+ SV+ G DA + A V +++ V V Sbjct 888 GEAVDAQEQLCQQESTRVISEKSVEGFTGSC---DAMAEQAIVEEQEIVPVVEQSQDVVV 944 Query 280 -----PEVVPEKA-------LGTSVERMRSTSEWTVVETSLKQETAVIVKNDSSAK---- 323 EVV E A L ++V + S+ E ++QE ++VK K Sbjct 945 FTPADLEVVKETAEEVDEFILISAVPKEEVVSQ-EKEEPQVEQEPTLVVKAQREKKAKKF 1003 Query 324 ---PQRVKKPKAENPLKNFKHIVLNNDVTLVFGDAIAVARATEDCILVNAANTHLKHGGG 380 P +KPK +K V D+ +V A A+ E CI VNAAN H+ HGGG Sbjct 1004 KVKPATCEKPK----FLEYKTCV--GDLAVVI--AKALDEFKEFCI-VNAANEHMSHGGG 1054 Query 381 IAAAIDRASGGLVQAESDDYVNFYGPLN-VGDSTLLKGHGLATGILHVVGPDARANQDIQ 439 +A AI G DYV +GP + + +KG + +VVGP + + Sbjct 1055 VAKAIADFCGPDFVEYCADYVKKHGPQQKLVTPSFVKG---IQCVNNVVGPRHGDSNLRE 1111 Query 440 LLKRCYKAFNKYPLV--VSPLISAGIFCVEPRVSLE 473 L YK+ +V V P++S+GIF V+ ++S++ Sbjct 1112 KLVAAYKSVLVGGVVNYVVPVLSSGIFGVDFKISID 1147 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p41; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Human coronavirus 229E] Sequence ID: P0C6X1.1 Length: 6758 Range 1: 2015 to 2485 Score:164 bits(415), Expect:3e-40, Method:Compositional matrix adjust., Identities:134/517(26%), Positives:241/517(46%), Gaps:47/517(9%) Query 1464 LGIHSLCDGMVEAYRNVSYDVNDFCSNRSALCNWCLIGQDSLTRYSAFQMIQTHVTSYVI 1523 G + C V Y ++ +D+C + S C CL G L+++S ++ H+T + Sbjct 2015 FGPFNFCSETVNGYAKSNFVKDDYC-DGSLGCKMCLFGYQELSQFSHLDVVWKHITDPLF 2073 Query 1524 NIDWVWFVMEFALAYVLYTSTFNVLLLVVSSQYFFSYTGAFVNWRSYNYLVSGYFFCVTH 1583 + + VM L + + LL +Q S G F+ ++ N+ + F V Sbjct 2074 SNMQPFIVM--VLLLIFGDNYLRCFLLYFVAQ-MISTVGVFLGYKETNWFLHFIPFDVIC 2130 Query 1584 IPLLGLVRIYNFLACLWFLRRFYNHVINGCKDTACLLCYKRNRLTRVEASTVVCGSKRTF 1643 LL V + ++ F HV+ GC++ C+ C K RL R +T+V G +R+F Sbjct 2131 DELLVTVIVIKVIS-------FVRHVLFGCENPDCIACSKSARLKRFPVNTIVNGVQRSF 2183 Query 1644 YIVANGGTSFCCRHNWNCVDCDTAGIGNTFICEEVANDLTTSLRRLVKPTDKSHYYVESV 1703 Y+ ANGG+ FC +H + CVDCD+ G G+TFI EV+ +L + V+PT ++ ++ V Sbjct 2184 YVNANGGSKFCKKHRFFCVDCDSYGYGSTFITPEVSRELGNITKTNVQPTGPAYVMIDKV 2243 Query 1704 TVKDSVVQLHYSREGASCYERYPLCYFTNLDKLKFKEVCKTPTGIPEHNFLIYDSSDRGQ 1763 ++ +L+ SC + + K KEV K + + F++++++ Sbjct 2244 EFENGFYRLY------SCETFWRYNFDITESKYSCKEVFKNCNVLDD--FIVFNNNGTNV 2295 Query 1764 ENLARSACVYYSQVLSKPMLLVDSNMVTTVGDSREIASKMLDSYVNSFISLFGVNRDKLD 1823 + ++A VY+SQ+L +P+ LVDS +++T+ S + + +Y++ + FG + + Sbjct 2296 TQV-KNASVYFSQLLCRPIKLVDSELLSTL--SVDFNGVLHKAYIDVLRNSFGKDLNANM 2352 Query 1824 KLVATARDCVKRGDDFQTVIKTFTDAARGPAGVESDVETSSIVDALQYAYKHDLQLTTEG 1883 L R A G + SD E +S A+ A++ D+ L+ Sbjct 2353 SLAECKR-------------------ALGLS--ISDHEFTS---AISNAHRCDVLLSDLS 2388 Query 1884 FNNYVPSYIKPDSVATA-DLGCLIDLNAASVNQTSIRNANGACIWNSSDYMKLSDSLKRQ 1942 FNN+V SY KP+ +A DL C + A VN + +W++ D+ LS ++ Sbjct 2389 FNNFVSSYAKPEEKLSAYDLACCMRAGAKVVNANVLTKDQTPIVWHAKDFNSLSAEGRKY 2448 Query 1943 IRIACRKCNIPFRLTTSRLRSADNILSVKFSATKLSG 1979 I + + F LT + ++ I + A + +G Sbjct 2449 IVKTSKAKGLTFLLTINENQAVTQIPATSIVAKQGAG 2485 Range 2: 1262 to 1462 Score:76.3 bits(186), Expect:1e-13, Method:Compositional matrix adjust., Identities:61/206(30%), Positives:97/206(47%), Gaps:27/206(13%) Query 330 PKAENPLK-NFKHIVLNNDVTLVFGDAIAVARATEDCILVNAANTHLKHGGGIAAAIDRA 388 PK E +K +++++V GD V + +VNAAN +L HGGG+A A+D Sbjct 1262 PKEEFVVKEKLNAFLVHDNVAFYQGDVDTVVNGVDFDFIVNAANENLAHGGGLAKALDVY 1321 Query 389 SGGLVQAESDDYVNFYGPLNVGDSTLLKGHGLATGILHVVGPDARANQDIQLLKRCYKAF 448 + G +Q S +++ G + VG +++ L I +VVGP + + LL + Y Sbjct 1322 TKGKLQRLSKEHIGLAGKVKVGTGVMVECDSLR--IFNVVGP-RKGKHERDLLIKAYNTI 1378 Query 449 NK---YPLVVSPLISAGIFCVEPRVSLEYLLSVVHTKTYVV------------------V 487 N PL +P++S GIF ++ SLE LL V +TK V V Sbjct 1379 NNEQGTPL--TPILSCGIFGIKLETSLEVLLDVCNTKEVKVFVYTDTEVCKVKDFVSGLV 1436 Query 488 NSEKVYNDLAAPKPPTGLTYSHEGWR 513 N +KV PKP + + + + +R Sbjct 1437 NVQKVEQPKIEPKPVSVIKVAPKPYR 1462 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Scotophilus bat coronavirus 512] Sequence ID: P0C6F6.1 Length: 4128 Range 1: 2067 to 2532 Score:163 bits(413), Expect:4e-40, Method:Compositional matrix adjust., Identities:132/518(25%), Positives:238/518(45%), Gaps:59/518(11%) Query 1469 LCDGMVEAYRNVSYDVNDFCSNRSALCNWCLIGQDSLTRYSAFQMIQTHVTSYVI-NIDW 1527 +C + Y N ++D ND+C N LC CL G + L+ ++ ++I H+ +I NI Sbjct 2067 ICKRYTDGYANSTFDKNDYCGN--VLCKICLYGYEELSDFTHTRVIWQHLKDPLIGNI-- 2122 Query 1528 VWFVMEFALAYVLYTSTFNVLLLVVSSQYFFSYTGAFVNWRSYNYLVSGYFFCVTHIPLL 1587 L Y+++ F + + YF ++N + GY V + LL Sbjct 2123 ------LPLFYLVFLIIFGGFFVRIGITYFIM---QYINAAG---VALGYQDNVWLLHLL 2170 Query 1588 GLVRIYNFLACLWFLRR---FYNHVINGCKDTACLLCYKRNRLTRVEASTVVCGSKRTFY 1644 + N + + + R F HV+ GC +C+ C K +LTRV T++ G ++FY Sbjct 2171 PFNSMGNIIVVAFIVTRILLFLKHVLFGCDKPSCIACSKSAKLTRVPLQTILQGVTKSFY 2230 Query 1645 IVANGGTSFCCRHNWNCVDCDTAGIGNTFICEEVANDLTTSLRRLVKPTDKSHYYVESVT 1704 + ANGG FC +HN+ CVDCD+ G G TFI + +A +L+ + V PT + ++ V Sbjct 2231 VNANGGKKFCKKHNFFCVDCDSYGYGCTFINDVIAPELSNVTKLNVIPTGPATIIIDKVE 2290 Query 1705 VKDSVVQLHYSREGASCYERYPLCYFTNLDKLKFKEVCKTPTGIPE--HNFLIYDSSDRG 1762 + L+ S + +Y N D + K CK +F+++++S Sbjct 2291 FSNGFYYLY----SGSTFWKY------NFDITEAKYACKDVLKNCNILTDFVVFNNSGSN 2340 Query 1763 QENLARSACVYYSQVLSKPMLLVDSNMVTTVGDSREIASKMLDSYVNSFISLFGVNRDKL 1822 + ++ACVY+SQ+L KP+ LVDS ++ ++ + + ++ + ++V + FG + Sbjct 2341 VTQV-KNACVYFSQLLCKPIKLVDSALLASL--NVDFSANLHKAFVEVLSNSFGKDLSNC 2397 Query 1823 DKLVATARDCVKRGDDFQTVIKTFTDAARGPAGVESDVETSSIVDALQYAYKHDLQLTTE 1882 + + R G+ SDV A+ A+++D+ ++ Sbjct 2398 SNM----------------------NECRESLGL-SDVPEEEFSAAVSEAHRYDVLISDV 2434 Query 1883 GFNNYVPSYIKPDS-VATADLGCLIDLNAASVNQTSIRNANGACIWNSSDYMKLSDSLKR 1941 FNN + SY KP+ +A D+ + + A VN + N +W + D++ LS+ ++ Sbjct 2435 SFNNLIVSYAKPEEKLAVHDIANCMRVGAKVVNHNVLTKDNVPVVWLAKDFIALSEEARK 2494 Query 1942 QIRIACRKCNIPFRLTTSRLRSADNILSVKFSATKLSG 1979 I + I F LT + R I ++ + K +G Sbjct 2495 YIVRTTKTKGINFMLTFNDRRMHLTIPTISVANKKGAG 2532 Range 2: 1310 to 1433 Score:67.8 bits(164), Expect:5e-11, Method:Compositional matrix adjust., Identities:48/128(38%), Positives:67/128(52%), Gaps:5/128(3%) Query 353 GDAIAVARATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDYVNFYGPLNVGDS 412 G+ A+ D +VNAAN L HGGGIA A+D + G +Q S+ YV+ G + VG Sbjct 1310 GELSALLSVNHD-FVVNAANEQLSHGGGIAKALDDLTKGELQVLSNQYVSRNGSIKVGSG 1368 Query 413 TLLKGHGLATGILHVVGPDARANQDIQLLKRCYK-AFNKYPLVVSPLISAGIFCVEPRVS 471 L+K IL+VVGP + +LL + Y F + + + PL+S GIF V S Sbjct 1369 VLIKCK--EHSILNVVGP-RKGKHAAELLTKAYTFVFKQKGVPLMPLLSVGIFKVPITES 1425 Query 472 LEYLLSVV 479 L L+ V Sbjct 1426 LAAFLACV 1433 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Papain-like protease; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p68; Contains: RecName: Full=Proofreading exoribonuclease; Short=ExoN; AltName: Full=Guanine-N7 methyltransferase; AltName: Full=Non-structural protein 14; Short=nsp14; AltName: Full=p58; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=Non-structural protein 15; Short=nsp15; AltName: Full=p39; Contains: RecName: Full=2'-O-methyl transferase; AltName: Full=Non-structural protein 16; Short=nsp16; AltName: Full=p35 [Avian infectious bronchitis virus (strain M41)] Sequence ID: P0C6Y3.1 Length: 6631 Range 1: 1546 to 2267 Score:163 bits(412), Expect:5e-40, Method:Compositional matrix adjust., Identities:202/832(24%), Positives:341/832(40%), Gaps:181/832(21%) Query 1219 DNKLPI-IKCKGLKKPF---VKDGYSF---------VNDPQGVNVIDTLGIDDLRALYVD 1265 D+KLP+ +K +G+K KDG+++ P V+D++ LRA++V+ Sbjct 1546 DSKLPLTLKVRGIKSVVDFRSKDGFTYKLTPDTDENSKTPVYYPVLDSIS---LRAIWVE 1602 Query 1266 RNLRLIVLKENNWSALFNIHTVEKGDLSVIAASGSI-----------------TRRV--- 1305 + +V N +S I T + S + I R+ Sbjct 1603 GSANFVVGHPNYYSKSLRIPTFWENAESFVKMGYKIDGVTMGLWRAEHLNKPNLERIFNI 1662 Query 1306 --KILLGASSLFAQFASVTVNVTTAMGKALGR-MTRNVITNT-GIIG---------QGFA 1352 K ++G+S + Q + V T + +G + RN+ G+ G Sbjct 1663 AKKAIVGSSVVTTQCGKILVKAATYVADKVGDGVVRNITDRIKGLCGFTRGHFEKKMSLQ 1722 Query 1353 LLKMLLILPFTFWKSKNQSTVKVEVGALRTAGIVTTNVVKQCASAAYDVLVVKFKRIDWK 1412 LK L+ F F K+ ++S V ++Y +++ K Sbjct 1723 FLKTLVFFFFYFLKASSKSLV-----------------------SSYKIVLCKVVF---- 1755 Query 1413 STLRLLFLICTTGLLLSSLYYLFLFHQVLTSDVMLDGAEGMLATYRELRSYLGIHSLCDG 1472 +TL +++ I T+ ++ F + D + +G SLC G Sbjct 1756 ATLLIVWFIYTSNPVV--------FTGIRVLDFLFEG------------------SLC-G 1788 Query 1473 MVEAYRNVSYDVNDFCSNRSALCNWCLIGQDSLTRYS-AFQMIQTHV-TSYVINIDWVWF 1530 Y S+DV +C+ C CL +DSL Y A+ + Q + + IN +W W Sbjct 1789 PYNDYGKDSFDVLRYCAG-DFTCRVCLHDRDSLHLYKHAYSVEQIYKDAASGINFNWNWL 1847 Query 1531 VMEFALAYVLYTSTFNVL-----LLVVSSQYFFSYTGAFVNW------RSYNYLVSGYFF 1579 + F + +V + F ++ LV+SS + G F++W +N++ +G++F Sbjct 1848 YLVFLILFVKPVAGFVIICYCVKYLVLSSTVLQTGVG-FLDWFVKTVFTHFNFMGAGFYF 1906 Query 1580 CVTHIPLLGLVRIYNFLACLWFLRRFYN--HVINGCKDTACLLCYKRNRLTRVEASTVVC 1637 W + Y H I CKD C +C + R R E S VV Sbjct 1907 --------------------WLFYKIYVQVHHILYCKDVTCEVCKRVARSNRQEVSVVVG 1946 Query 1638 GSKRTFYIVANGGTSFCCRHNWNCVDCDTAGIGNTFICEEVANDLTTSLRRLVKPTDKSH 1697 G K+ ++ N G +FC RHNW C +CD G NTF+ EVA +L+ L+R VKPT ++ Sbjct 1947 GRKQIVHVYTNSGYNFCKRHNWYCRNCDDYGHQNTFMSPEVAGELSEKLKRHVKPTAYAY 2006 Query 1698 YYVESVTVKDSVVQLHY-----SREGASCYERYPLCYFTNLDKLK----FKEVCKTPTGI 1748 + V V D V L Y ++ AS + C F+ D LK KE K I Sbjct 2007 HVVYEACVVDDFVNLKYKAAIPGKDNASSAVK---C-FSVTDFLKKAVFLKEALKCEQ-I 2061 Query 1749 PEHNFLIYDSSDRGQENLARSACVYYSQVLSKPMLLVDSNMVTTVGDSREIASKMLDSYV 1808 F++ ++ A++A VYY+Q L KP+L++D + + ++ ++D Sbjct 2062 SNDGFIVCNTQSAHALEEAKNAAVYYAQYLCKPILILDQALYEQL-IVEPVSKSVIDKVC 2120 Query 1809 NSFISLFGVNRDKLDKLVATARDCVKRGDDFQTVIKTFTDAARGPAGVESDVETSSIVDA 1868 + ++ V+ L+ T RD + + D E VD Sbjct 2121 SILSNIISVDTAALNYKAGTLRDAL--------------------LSITKDEEA---VDM 2157 Query 1869 LQYAYKHDLQLTTEGFNNYVPSY-IKPDSVATADLGCLIDLNAASVNQTSIRNANGACIW 1927 + + H+++ T +GF N +PSY + D + D G LI+ + AS+ ++NA +W Sbjct 2158 AIFCHNHEVEYTGDGFTNVIPSYGMDTDKLTPRDRGFLINAD-ASIANLRVKNA-PPVVW 2215 Query 1928 NSSDYMKLSDSLKRQIRIACRKCNIPFRLTTSRLRSADNILSVKFSATKLSG 1979 SD +KLSDS + + A K F +T S + + + K K +G Sbjct 2216 KFSDLIKLSDSCLKYLISATVKSGGRFFITKSGAKQVISCHTQKLLVEKKAG 2267 Range 2: 1175 to 1410 Score:69.7 bits(169), Expect:1e-11, Method:Compositional matrix adjust., Identities:73/259(28%), Positives:112/259(43%), Gaps:34/259(13%) Query 705 AQQKNVDVLVTIDGVNFRTVVLNNTTTYRVQLGSVFYKGSDISDTIPTEKMSGEAVYLAD 764 A K + +T DGV +R+VVL + Q G VF + + V+ AD Sbjct 1175 ATCKQKTIYLTEDGVKYRSVVLKPGDSLG-QFGQVFARN--------------KVVFSAD 1219 Query 765 NLSEAEKAVLSEVYGTADTAFLHRYYSLLA---------LVKKWKYTVHDGVKSLKLNSN 815 ++ + E + T D L YY L A L +KW D L+ Sbjct 1220 DVEDKEILFIP----TTDKTIL-EYYGLDAQKYVTYLQTLAQKWDVQYRDNFVILEWRDG 1274 Query 816 NCYVNVTMLMLDMLKEIKFIVPALQAAYLKHKGGDSTEFIALIMAYGDCTYGEPDDASRL 875 NC+++ +++L K I+F L A+ K GGD T+F+A A + G+ DA+ L Sbjct 1275 NCWISSAIVLLQAAK-IRF-KGFLAEAWAKLLGGDPTDFVAWCYASCNAKVGDFSDANWL 1332 Query 876 LHTILSKAELT-TQAKMVWRQWCNVCGVQDTTTTGLKACIY-VGMNSLDELHATHEECCQ 933 L + + T A + CN CGV+ GL+ACI V +L + C Sbjct 1333 LANLAEHFDADYTNALLKKCVSCN-CGVKSYELRGLEACIQPVRAPNLLHFKTQYSNCPT 1391 Query 934 CGDVRKRQLVEHNAPWLLL 952 CG +++E + P+LLL Sbjct 1392 CGASSTDEVIEASLPYLLL 1410 Range 3: 888 to 1147 Score:57.0 bits(136), Expect:1e-07, Method:Compositional matrix adjust., Identities:80/276(29%), Positives:124/276(44%), Gaps:38/276(13%) Query 220 AKANDCAEGMPALDSTETVSKLSVDTPVGDVTQDDATSSNATVISED-VHTATHSKGLVA 278 +A D E + +ST +S+ SV+ G DA + A V ++ V S+ +V Sbjct 888 GEAVDAQEQLCQQESTRVISEKSVEGFTGSC---DAMAEQAIVEEQEIVPVVEQSQDVVV 944 Query 279 VP----EVVPEKA-------LGTSVERMRSTSEWTVVETSLKQETAVIVKNDSSAK---- 323 EVV E A L ++V + S+ E ++QE ++VK K Sbjct 945 FTPADLEVVKETAEEVDEFILISAVPKEEVVSQ-EKEEPQVEQEPTLVVKAQREKKAKKF 1003 Query 324 ---PQRVKKPKAENPLKNFKHIVLNNDVTLVFGDAIAVARATEDCILVNAANTHLKHGGG 380 P +KPK +K V D+ +V A A+ E CI VNAAN H+ HGGG Sbjct 1004 KVKPATCEKPK----FLEYKTCV--GDLAVVI--AKALDEFKEFCI-VNAANEHMSHGGG 1054 Query 381 IAAAIDRASGGLVQAESDDYVNFYGPLN-VGDSTLLKGHGLATGILHVVGPDARANQDIQ 439 +A AI G DYV +GP + + +KG + +VVGP + + Sbjct 1055 VAKAIADFCGPDFVEYCADYVKKHGPQQKLVTPSFVKG---IQCVNNVVGPRHGDSNLRE 1111 Query 440 LLKRCYKAFNKYPLV--VSPLISAGIFCVEPRVSLE 473 L YK+ +V V P++S+GIF V+ ++S++ Sbjct 1112 KLVAAYKSVLVGGVVNYVVPVLSSGIFGVDFKISID 1147 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Porcine transmissible gastroenteritis coronavirus strain Purdue] Sequence ID: P0C6V2.1 Length: 4017 Range 1: 1916 to 2382 Score:162 bits(410), Expect:9e-40, Method:Compositional matrix adjust., Identities:137/517(26%), Positives:240/517(46%), Gaps:57/517(11%) Query 1466 IHSL-CDGMVEAYRNVSYDVNDFCSNRSALCNWCLIGQDSLTRYSAFQMIQTHVTSYVIN 1524 +H L C+G V+AY+N S+ + C N S LC CL D L + Q+ ++ Sbjct 1916 VHKLTCNGAVQAYKNSSFIKSAVCGN-SILCKACLASYDELADFQHLQV------TWDFK 1968 Query 1525 IDWVWFVMEFALAYVLYTSTFNVLLLVVSSQYFFSYTGAFVN-WRSY-NYLVSGYFFCVT 1582 D +W + L+Y + + F + YF S ++N W SY Y+ +F V Sbjct 1969 SDPLWNRL-VQLSYFAFLAVFGNNYVRCFLMYFVS---QYLNLWLSYFGYVEYSWFLHVV 2024 Query 1583 HIPLLG--LVRIYNFLACLWFLRRFYNHVINGCKDTACLLCYKRNRLTRVEASTVVCGSK 1640 + + V + + + L+ H++ C + +C C + R TR+ VV GS Sbjct 2025 NFESISAEFVIVVIVVKAVLALK----HIVFACSNPSCKTCSRTARQTRIPIQVVVNGSM 2080 Query 1641 RTFYIVANGGTSFCCRHNWNCVDCDTAGIGNTFICEEVANDLTTSLRRLVKPTDKSHYYV 1700 +T Y+ ANG FC +HN+ C +CD+ G NTFIC+E+ DL+ S+++ V TD+SH V Sbjct 2081 KTVYVHANGTGKFCKKHNFYCKNCDSYGFENTFICDEIVRDLSNSVKQTVYATDRSHQEV 2140 Query 1701 ESVTVKDSVVQLHYSREGASCYERYPLCYFTNLDKLKFKEVCKTPTGIPEHNFLIYDSSD 1760 V D + + E S Y+ Y K +EV K+ + +F++Y S Sbjct 2141 TKVECSDGFYRFYVGDEFTS-YD-----YDVKHKKYSSQEVLKSMLLL--DDFIVYSPSG 2192 Query 1761 RGQENLARSACVYYSQVLSKPMLLVDSNMVTTVGDSREIASKMLDSYVNSFISLFGVNRD 1820 N+ R+ACVY+SQ++ KP+ +V+S+++ + S + + ++ N + F V+ Sbjct 2193 SALANV-RNACVYFSQLIGKPIKIVNSDLLEDL--SVDFKGALFNAKKNVIKNSFNVDVS 2249 Query 1821 KLDKLVATARDCVKRGDDFQTVIKTFTDAARGPAGVESDVETSSIVDALQYAYKHDLQLT 1880 + L R C +V S+ A+ A++ + +T Sbjct 2250 ECKNLDECYRAC------------------------NLNVSFSTFEMAVNNAHRFGILIT 2285 Query 1881 TEGFNNYVPSYIKPDS--VATADLGCLIDLNAASVNQTSIRNANGACIWNSSDYMKLSDS 1938 FNN+ PS +KP S V+ D+G + +A VN + + +W S D+ LS + Sbjct 2286 DRSFNNFWPSKVKPGSSGVSAMDIGKCMTSDAKIVNAKVLTQRGKSVVWLSQDFAALSST 2345 Query 1939 LKRQIRIACRKCNIPFRLTTSRLRSADNILSVKFSAT 1975 ++ + + + F LT + + S D++ +F+ + Sbjct 2346 AQKVLVKTFVEEGVNFSLTFNAVGSDDDLPYERFTES 2382 Range 2: 1296 to 1466 Score:68.6 bits(166), Expect:3e-11, Method:Compositional matrix adjust., Identities:50/174(29%), Positives:85/174(48%), Gaps:4/174(2%) Query 310 QETAVIVKNDSSAKPQRVKKPKAENPLKNFKHIVLNNDVTLVFGDAIAVARATEDCILVN 369 ++ ++ +N SS + + ++ PK ++ + F ++ G + E ++VN Sbjct 1296 EQQPIVEENKSSIEKEEIQSPKNDDLILPFYKA---GKLSFYQGALDVLINFLEPDVIVN 1352 Query 370 AANTHLKHGGGIAAAIDRASGGLVQAESDDYVNFYGPLNVGDSTLLKGHGLATGILHVVG 429 AAN LKH GG+A AID +GG + S DY+ + G++ + +L+ VG Sbjct 1353 AANGDLKHMGGVARAIDVFTGGKLTERSKDYLKKNKSIAPGNAVFFENVIEHLSVLNAVG 1412 Query 430 PDARANQDIQLLKRCYKAFNKYP-LVVSPLISAGIFCVEPRVSLEYLLSVVHTK 482 P ++ L YKA K +++PLIS GIF V SL+ LL V+ + Sbjct 1413 PRNGDSRVEAKLCNVYKAIAKCEGKILTPLISVGIFNVRLETSLQCLLKTVNDR 1466 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Scotophilus bat coronavirus 512] Sequence ID: P0C6W0.1 Length: 6793 Range 1: 2067 to 2532 Score:162 bits(410), Expect:9e-40, Method:Compositional matrix adjust., Identities:132/518(25%), Positives:238/518(45%), Gaps:59/518(11%) Query 1469 LCDGMVEAYRNVSYDVNDFCSNRSALCNWCLIGQDSLTRYSAFQMIQTHVTSYVI-NIDW 1527 +C + Y N ++D ND+C N LC CL G + L+ ++ ++I H+ +I NI Sbjct 2067 ICKRYTDGYANSTFDKNDYCGN--VLCKICLYGYEELSDFTHTRVIWQHLKDPLIGNI-- 2122 Query 1528 VWFVMEFALAYVLYTSTFNVLLLVVSSQYFFSYTGAFVNWRSYNYLVSGYFFCVTHIPLL 1587 L Y+++ F + + YF ++N + GY V + LL Sbjct 2123 ------LPLFYLVFLIIFGGFFVRIGITYFIM---QYINAAG---VALGYQDNVWLLHLL 2170 Query 1588 GLVRIYNFLACLWFLRR---FYNHVINGCKDTACLLCYKRNRLTRVEASTVVCGSKRTFY 1644 + N + + + R F HV+ GC +C+ C K +LTRV T++ G ++FY Sbjct 2171 PFNSMGNIIVVAFIVTRILLFLKHVLFGCDKPSCIACSKSAKLTRVPLQTILQGVTKSFY 2230 Query 1645 IVANGGTSFCCRHNWNCVDCDTAGIGNTFICEEVANDLTTSLRRLVKPTDKSHYYVESVT 1704 + ANGG FC +HN+ CVDCD+ G G TFI + +A +L+ + V PT + ++ V Sbjct 2231 VNANGGKKFCKKHNFFCVDCDSYGYGCTFINDVIAPELSNVTKLNVIPTGPATIIIDKVE 2290 Query 1705 VKDSVVQLHYSREGASCYERYPLCYFTNLDKLKFKEVCKTPTGIPE--HNFLIYDSSDRG 1762 + L+ S + +Y N D + K CK +F+++++S Sbjct 2291 FSNGFYYLY----SGSTFWKY------NFDITEAKYACKDVLKNCNILTDFVVFNNSGSN 2340 Query 1763 QENLARSACVYYSQVLSKPMLLVDSNMVTTVGDSREIASKMLDSYVNSFISLFGVNRDKL 1822 + ++ACVY+SQ+L KP+ LVDS ++ ++ + + ++ + ++V + FG + Sbjct 2341 VTQV-KNACVYFSQLLCKPIKLVDSALLASL--NVDFSANLHKAFVEVLSNSFGKDLSNC 2397 Query 1823 DKLVATARDCVKRGDDFQTVIKTFTDAARGPAGVESDVETSSIVDALQYAYKHDLQLTTE 1882 + + R G+ SDV A+ A+++D+ ++ Sbjct 2398 SNM----------------------NECRESLGL-SDVPEEEFSAAVSEAHRYDVLISDV 2434 Query 1883 GFNNYVPSYIKPDS-VATADLGCLIDLNAASVNQTSIRNANGACIWNSSDYMKLSDSLKR 1941 FNN + SY KP+ +A D+ + + A VN + N +W + D++ LS+ ++ Sbjct 2435 SFNNLIVSYAKPEEKLAVHDIANCMRVGAKVVNHNVLTKDNVPVVWLAKDFIALSEEARK 2494 Query 1942 QIRIACRKCNIPFRLTTSRLRSADNILSVKFSATKLSG 1979 I + I F LT + R I ++ + K +G Sbjct 2495 YIVRTTKTKGINFMLTFNDRRMHLTIPTISVANKKGAG 2532 Range 2: 1310 to 1433 Score:68.2 bits(165), Expect:4e-11, Method:Compositional matrix adjust., Identities:48/128(38%), Positives:67/128(52%), Gaps:5/128(3%) Query 353 GDAIAVARATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDYVNFYGPLNVGDS 412 G+ A+ D +VNAAN L HGGGIA A+D + G +Q S+ YV+ G + VG Sbjct 1310 GELSALLSVNHD-FVVNAANEQLSHGGGIAKALDDLTKGELQVLSNQYVSRNGSIKVGSG 1368 Query 413 TLLKGHGLATGILHVVGPDARANQDIQLLKRCYK-AFNKYPLVVSPLISAGIFCVEPRVS 471 L+K IL+VVGP + +LL + Y F + + + PL+S GIF V S Sbjct 1369 VLIKCK--EHSILNVVGP-RKGKHAAELLTKAYTFVFKQKGVPLMPLLSVGIFKVPITES 1425 Query 472 LEYLLSVV 479 L L+ V Sbjct 1426 LAAFLACV 1433 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Papain-like protease; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Avian infectious bronchitis virus (strain Beaudette)] Sequence ID: P0C6V3.1 Length: 3951 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Papain-like protease; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Avian infectious bronchitis virus (strain Beaudette CK)] Sequence ID: P0C6V4.1 Length: 3951 Range 1: 1783 to 2265 Score:161 bits(408), Expect:2e-39, Method:Compositional matrix adjust., Identities:145/535(27%), Positives:234/535(43%), Gaps:75/535(14%) Query 1468 SLCDGMVEAYRNVSYDVNDFCSNRSALCNWCLIGQDSLT----RYSAFQMIQTHVTSYVI 1523 SLC G + Y S+DV +C++ +C CL +DSL YS Q+ + + ++ Sbjct 1783 SLC-GPYKDYGKDSFDVLRYCAD-DFICRVCLHDKDSLHLYKHAYSVEQVYKDAASGFIF 1840 Query 1524 NIDWVWFVMEFALAYVLYTSTFNVLLLVVSSQYFFS---YTGA-FVNW------RSYNYL 1573 N W W + F + +V + F ++ V S TG F++W +N++ Sbjct 1841 N--WNWLYLVFLILFVKPVAGFVIICYCVKYLVLNSTVLQTGVCFLDWFVQTVFSHFNFM 1898 Query 1574 VSGYFFCVTHIPLLGLVRIYNFLACLWFLRRFY--NHVINGCKDTACLLCYKRNRLTRVE 1631 +G++F W + Y H I CKD C +C + R R E Sbjct 1899 GAGFYF--------------------WLFYKIYIQVHHILYCKDVTCEVCKRVARSNRQE 1938 Query 1632 ASTVVCGSKRTFYIVANGGTSFCCRHNWNCVDCDTAGIGNTFICEEVANDLTTSLRRLVK 1691 S VV G K+ ++ N G +FC RHNW C +CD G NTF+ EVA +L+ L+R VK Sbjct 1939 VSVVVGGRKQIVHVYTNSGYNFCKRHNWYCRNCDDYGHQNTFMSPEVAGELSEKLKRHVK 1998 Query 1692 PTDKSHYYVESVTVKDSVVQLHY--SREGASCYERYPLCYFTNLDKLK----FKEVCKTP 1745 PT +++ V+ + D V L Y + G C F+ D LK KE K Sbjct 1999 PTAYAYHVVDEACLVDDFVNLKYKAATPGKDSASSAVKC-FSVTDFLKKAVFLKEALKCE 2057 Query 1746 TGIPEHNFLIYDSSDRGQENLARSACVYYSQVLSKPMLLVDSNMVTTVGDSREIASKMLD 1805 I F++ ++ A++A +YY+Q L KP+L++D + + ++ ++D Sbjct 2058 Q-ISNDGFIVCNTQSAHALEEAKNAAIYYAQYLCKPILILDQALYEQL-VVEPVSKSVID 2115 Query 1806 SYVNSFISLFGVNRDKLDKLVATARDCVKRGDDFQTVIKTFTDAARGPAGVESDVETSSI 1865 + S+ V+ L+ T RD + + D E Sbjct 2116 KVCSILSSIISVDTAALNYKAGTLRDAL--------------------LSITKDEEA--- 2152 Query 1866 VDALQYAYKHDLQLTTEGFNNYVPSY-IKPDSVATADLGCLIDLNAASVNQTSIRNANGA 1924 VD + + HD+ T +GF N +PSY I + D G LI+ + AS+ ++NA Sbjct 2153 VDMAIFCHNHDVDYTGDGFTNVIPSYGIDTGKLTPRDRGFLINAD-ASIANLRVKNAP-P 2210 Query 1925 CIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLTTSRLRSADNILSVKFSATKLSG 1979 +W S+ +KLSDS + + A K + F +T S + + K K +G Sbjct 2211 VVWKFSELIKLSDSCLKYLISATVKSGVRFFITKSGAKQVIACHTQKLLVEKKAG 2265 Range 2: 1149 to 1437 Score:72.4 bits(176), Expect:2e-12, Method:Compositional matrix adjust., Identities:81/317(26%), Positives:134/317(42%), Gaps:48/317(15%) Query 691 DSLEKCRTYLTSRAAQQKNVD----------VLVTIDGVNFRTVVLNNTTTYRVQLGSVF 740 ++ E C + + Q+++D + +T DGV +R++VL + Q G V+ Sbjct 1149 EAFEGCTIRVLLFSLSQEHIDYFDVTCKQKTIYLTEDGVKYRSIVLKPGDSLG-QFGQVY 1207 Query 741 YKGSDISDTIPTEKMSGEAVYLADNLSEAE--------KAVLSEVYGTADTAFLHRYYSL 792 K + V+ AD++ + E K++L E YG ++ L Sbjct 1208 AKN--------------KIVFTADDVEDKEILYVPTTDKSIL-EYYGLDAQKYV---IYL 1249 Query 793 LALVKKWKYTVHDGVKSLKLNSNNCYVNVTMLMLDMLKEIKFIVPALQAAYLKHKGGDST 852 L +KW D L+ NC+++ +++L K I+F L A+ K GGD T Sbjct 1250 QTLAQKWNVQYRDNFLILEWRDGNCWISSAIVLLQAAK-IRF-KGFLTEAWAKLLGGDPT 1307 Query 853 EFIALIMAYGDCTYGEPDDASRLLHTILSKAELT-TQAKMVWRQWCNVCGVQDTTTTGLK 911 +F+A A G+ DA+ LL + + T A + R CN CG++ GL+ Sbjct 1308 DFVAWCYASCTAKVGDFSDANWLLANLAEHFDADYTNAFLKKRVSCN-CGIKSYELRGLE 1366 Query 912 ACIY-VGMNSLDELHATHEECCQCGDVRKRQLVEHNAPWLLLSGLNEAKVMTPTSQSAGP 970 ACI V +L + C CG +++E + P+LLL + P + Sbjct 1367 ACIQPVRATNLLHFKTQYSNCPTCGANNTDEVIEASLPYLLLFATD-----GPATVDCDE 1421 Query 971 DYTAFNVFQGVETSVGH 987 D VF G T+ GH Sbjct 1422 DAVGTVVFVG-STNSGH 1437 Range 3: 982 to 1145 Score:49.7 bits(117), Expect:1e-05, Method:Compositional matrix adjust., Identities:57/176(32%), Positives:82/176(46%), Gaps:22/176(12%) Query 308 LKQETAVIVKNDSSAK-------PQRVKKPKAENPLKNFKHIVLNNDVTLVFGDAIAVAR 360 +KQE +VK K P +KPK +K V D+T+V A A+ Sbjct 982 IKQEPIQVVKPQREKKAKKFKVKPATCEKPK----FLEYKTCV--GDLTVVI--AKALDE 1033 Query 361 ATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDYVNFYGPLN-VGDSTLLKGHG 419 E CI VNAAN H+ HG G+A AI G +DYV +GP + + +KG Sbjct 1034 FKEFCI-VNAANEHMTHGSGVAKAIADFCGLDFVEYCEDYVKKHGPQQRLVTPSFVKG-- 1090 Query 420 LATGILHVVGPDARANQDIQLLKRCYKAFNKYPLV--VSPLISAGIFCVEPRVSLE 473 + +VVGP N + L YK +V V P++S GIF V+ ++S++ Sbjct 1091 -IQCVNNVVGPRHGDNNLHEKLVAAYKNVLVDGVVNYVVPVLSLGIFGVDFKMSID 1145 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p41; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Porcine transmissible gastroenteritis coronavirus strain Purdue] Sequence ID: P0C6Y5.1 Length: 6684 Range 1: 1916 to 2382 Score:161 bits(408), Expect:2e-39, Method:Compositional matrix adjust., Identities:137/517(26%), Positives:240/517(46%), Gaps:57/517(11%) Query 1466 IHSL-CDGMVEAYRNVSYDVNDFCSNRSALCNWCLIGQDSLTRYSAFQMIQTHVTSYVIN 1524 +H L C+G V+AY+N S+ + C N S LC CL D L + Q+ ++ Sbjct 1916 VHKLTCNGAVQAYKNSSFIKSAVCGN-SILCKACLASYDELADFQHLQV------TWDFK 1968 Query 1525 IDWVWFVMEFALAYVLYTSTFNVLLLVVSSQYFFSYTGAFVN-WRSY-NYLVSGYFFCVT 1582 D +W + L+Y + + F + YF S ++N W SY Y+ +F V Sbjct 1969 SDPLWNRL-VQLSYFAFLAVFGNNYVRCFLMYFVS---QYLNLWLSYFGYVEYSWFLHVV 2024 Query 1583 HIPLLG--LVRIYNFLACLWFLRRFYNHVINGCKDTACLLCYKRNRLTRVEASTVVCGSK 1640 + + V + + + L+ H++ C + +C C + R TR+ VV GS Sbjct 2025 NFESISAEFVIVVIVVKAVLALK----HIVFACSNPSCKTCSRTARQTRIPIQVVVNGSM 2080 Query 1641 RTFYIVANGGTSFCCRHNWNCVDCDTAGIGNTFICEEVANDLTTSLRRLVKPTDKSHYYV 1700 +T Y+ ANG FC +HN+ C +CD+ G NTFIC+E+ DL+ S+++ V TD+SH V Sbjct 2081 KTVYVHANGTGKFCKKHNFYCKNCDSYGFENTFICDEIVRDLSNSVKQTVYATDRSHQEV 2140 Query 1701 ESVTVKDSVVQLHYSREGASCYERYPLCYFTNLDKLKFKEVCKTPTGIPEHNFLIYDSSD 1760 V D + + E S Y+ Y K +EV K+ + + F++Y S Sbjct 2141 TKVECSDGFYRFYVGDEFTS-YD-----YDVKHKKYSSQEVLKSMLLLDD--FIVYSPSG 2192 Query 1761 RGQENLARSACVYYSQVLSKPMLLVDSNMVTTVGDSREIASKMLDSYVNSFISLFGVNRD 1820 N+ R+ACVY+SQ++ KP+ +V+S+++ + S + + ++ N + F V+ Sbjct 2193 SALANV-RNACVYFSQLIGKPIKIVNSDLLEDL--SVDFKGALFNAKKNVIKNSFNVDVS 2249 Query 1821 KLDKLVATARDCVKRGDDFQTVIKTFTDAARGPAGVESDVETSSIVDALQYAYKHDLQLT 1880 + L R C +V S+ A+ A++ + +T Sbjct 2250 ECKNLDECYRAC------------------------NLNVSFSTFEMAVNNAHRFGILIT 2285 Query 1881 TEGFNNYVPSYIKPDS--VATADLGCLIDLNAASVNQTSIRNANGACIWNSSDYMKLSDS 1938 FNN+ PS +KP S V+ D+G + +A VN + + +W S D+ LS + Sbjct 2286 DRSFNNFWPSKVKPGSSGVSAMDIGKCMTSDAKIVNAKVLTQRGKSVVWLSQDFAALSST 2345 Query 1939 LKRQIRIACRKCNIPFRLTTSRLRSADNILSVKFSAT 1975 ++ + + + F LT + + S D++ +F+ + Sbjct 2346 AQKVLVKTFVEEGVNFSLTFNAVGSDDDLPYERFTES 2382 Range 2: 1296 to 1466 Score:68.9 bits(167), Expect:2e-11, Method:Compositional matrix adjust., Identities:50/174(29%), Positives:85/174(48%), Gaps:4/174(2%) Query 310 QETAVIVKNDSSAKPQRVKKPKAENPLKNFKHIVLNNDVTLVFGDAIAVARATEDCILVN 369 ++ ++ +N SS + + ++ PK ++ + F ++ G + E ++VN Sbjct 1296 EQQPIVEENKSSIEKEEIQSPKNDDLILPFYKA---GKLSFYQGALDVLINFLEPDVIVN 1352 Query 370 AANTHLKHGGGIAAAIDRASGGLVQAESDDYVNFYGPLNVGDSTLLKGHGLATGILHVVG 429 AAN LKH GG+A AID +GG + S DY+ + G++ + +L+ VG Sbjct 1353 AANGDLKHMGGVARAIDVFTGGKLTERSKDYLKKNKSIAPGNAVFFENVIEHLSVLNAVG 1412 Query 430 PDARANQDIQLLKRCYKAFNKYP-LVVSPLISAGIFCVEPRVSLEYLLSVVHTK 482 P ++ L YKA K +++PLIS GIF V SL+ LL V+ + Sbjct 1413 PRNGDSRVEAKLCNVYKAIAKCEGKILTPLISVGIFNVRLETSLQCLLKTVNDR 1466 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Papain-like protease nsp3; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Porcine epidemic diarrhea virus CV777] Sequence ID: P0C6V6.1 Length: 4117 Range 1: 1960 to 2518 Score:161 bits(407), Expect:2e-39, Method:Compositional matrix adjust., Identities:164/654(25%), Positives:288/654(44%), Gaps:105/654(16%) Query 1336 MTRNVITNTGIIGQGFALLKMLLILPFTFWKSKNQSTVKVEVGALRTAGIVTTNVVKQCA 1395 M+RN+IT L +L IL F ++ + VKV G + GI+ ++ A Sbjct 1960 MSRNLIT---------VFLYILSILGLCF-RAFRKRDVKVLAGVPQRTGIILRKSMRYNA 2009 Query 1396 SAAYDVLVVKFK-RIDWKSTLRLLFLICTTGLLLSSLYYLFLFHQVLTSDVMLDGAEGML 1454 A L V FK ++ W L L + +LY L M Sbjct 2010 KA----LGVFFKLKLYWFKVLGKF------SLGIYALYALLF----------------MT 2043 Query 1455 ATYRELRSYLGIHSLCDGMVEAYRNVSYDVNDFCSNRSALCNWCLIGQDSLTRYSAFQMI 1514 + + S +CD +V Y N S+D N++C+ S +C CL G L+ +S Q++ Sbjct 2044 IRFTPIGS-----PVCDDVVAGYANSSFDKNEYCN--SVICKVCLYGYQELSDFSHTQVV 2096 Query 1515 QTHVTSYVINIDWVWFVMEFALAYVLYTSTFNVLLLVVSSQYF-FSYT---GAFVNWRSY 1570 H+ +I VM F Y+ + + F + + + YF F Y G F+ + Sbjct 2097 WQHLRDPLIGN-----VMPFF--YLAFLAIFGGVYVKAITLYFIFQYLNSLGVFLGLQQ- 2148 Query 1571 NYLVSGYFFCVTHIPLLGLVRIYNFLACLWFLRRFYNHVINGCKDTACLLCYKRNRLTRV 1630 S +F + + G + F+ + F HV GC +C+ C K RL RV Sbjct 2149 ----SIWFLQLVPFDVFGDEIVVFFIVTRVLM--FIKHVCLGCDKASCVACSKSARLKRV 2202 Query 1631 EASTVVCGSKRTFYIVANGGTSFCCRHNWNCVDCDTAGIGNTFICEEVANDLTTSLRRLV 1690 T+ G+ ++FY+ ANGG+ FC +HN+ C++CD+ G G TFI + +A ++ ++ V Sbjct 2203 PVQTIFQGTSKSFYVHANGGSKFCKKHNFFCLNCDSYGPGCTFINDVIATEVGNVVKLNV 2262 Query 1691 KPTDKSHYYVESVTVKDSVVQLHYSREGASCYERYPLCYFTNLD----KLKFKEVCKTPT 1746 +PT + ++ V + L+ + +Y N D K KE K + Sbjct 2263 QPTGPATILIDKVEFSNGFYYLY----SGDTFWKY------NFDITDSKYTCKEALKNCS 2312 Query 1747 GIPEHNFLIYDSSDRGQENLARSACVYYSQVLSKPMLLVDSNMVTTVGDSREIASKMLDS 1806 I + F++++ ++ N ++ACVY+SQ+L KP+ LVDS ++ ++ S + + + + Sbjct 2313 IITD--FIVFN-NNGSNVNQVKNACVYFSQMLCKPVKLVDSALLASL--SVDFGASLHSA 2367 Query 1807 YVNSFISLFGVNRDKLDKLVATARDCVKRGDDFQTVIKTFTDAARGPAGVESDVETSSIV 1866 +V+ + FG + + + +DC + G + DV + Sbjct 2368 FVSVLSNSFGKDLSSCNDM----QDC------------------KSTLGFD-DVPLDTFN 2404 Query 1867 DALQYAYKHDLQLTTEGFNNYVPSYIKPDS-VATADLGCLIDLNAASVNQTSIRNANGAC 1925 A+ A+++D+ LT FNN+ SY KP+ D+ + + A VN + + Sbjct 2405 AAVAEAHRYDVLLTDMSFNNFTTSYAKPEEKFPVHDIATCMRVGAKIVNHNVLVKDSIPV 2464 Query 1926 IWNSSDYMKLSDSLKRQIRIACRKCNIPFRLTTSRLRSADNILSVKFSATKLSG 1979 +W D++ LS+ ++ I + I F LT + R I +V + K +G Sbjct 2465 VWLVRDFIALSEETRKYIIRTTKVKGITFMLTFNDCRMHTTIPTVCIANKKGAG 2518 Range 2: 1316 to 1442 Score:84.0 bits(206), Expect:7e-16, Method:Compositional matrix adjust., Identities:51/130(39%), Positives:74/130(56%), Gaps:7/130(5%) Query 366 ILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDYVNFYGPLNVGDSTLLKGHGLATGIL 425 +VNAAN L HGGGIA AID + G++Q S+DY+ +GP+ VG +L+ GL + Sbjct 1316 FVVNAANEKLSHGGGIAKAIDVYTKGMLQKCSNDYIKAHGPIKVGRGVMLEALGLK--VF 1373 Query 426 HVVGPDARANQDIQLLKRCYKA-FNKYPLVVSPLISAGIFCVEPRVSLEYLLSVV---HT 481 +VVGP + +LL + YK+ F + ++PLIS GIF V SL L+ V H Sbjct 1374 NVVGPR-KGKHAPELLVKAYKSVFANSGVALTPLISVGIFSVPLEESLSAFLACVGDRHC 1432 Query 482 KTYVVVNSEK 491 K + + E+ Sbjct 1433 KCFCYGDKER 1442 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Papain-like protease nsp3; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; AltName: Full=Non-structural protein 14; Short=nsp14; AltName: Full=Proofreading exoribonuclease nsp14; Short=ExoN; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=Non-structural protein 15; Short=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=Non-structural protein 16; Short=nsp16 [Porcine epidemic diarrhea virus CV777] Sequence ID: P0C6Y4.1 Length: 6781 Range 1: 1960 to 2518 Score:160 bits(405), Expect:4e-39, Method:Compositional matrix adjust., Identities:164/654(25%), Positives:288/654(44%), Gaps:105/654(16%) Query 1336 MTRNVITNTGIIGQGFALLKMLLILPFTFWKSKNQSTVKVEVGALRTAGIVTTNVVKQCA 1395 M+RN+IT L +L IL F ++ + VKV G + GI+ ++ A Sbjct 1960 MSRNLIT---------VFLYILSILGLCF-RAFRKRDVKVLAGVPQRTGIILRKSMRYNA 2009 Query 1396 SAAYDVLVVKFK-RIDWKSTLRLLFLICTTGLLLSSLYYLFLFHQVLTSDVMLDGAEGML 1454 A L V FK ++ W L L + +LY L M Sbjct 2010 KA----LGVFFKLKLYWFKVLGKF------SLGIYALYALLF----------------MT 2043 Query 1455 ATYRELRSYLGIHSLCDGMVEAYRNVSYDVNDFCSNRSALCNWCLIGQDSLTRYSAFQMI 1514 + + S +CD +V Y N S+D N++C+ S +C CL G L+ +S Q++ Sbjct 2044 IRFTPIGS-----PVCDDVVAGYANSSFDKNEYCN--SVICKVCLYGYQELSDFSHTQVV 2096 Query 1515 QTHVTSYVINIDWVWFVMEFALAYVLYTSTFNVLLLVVSSQYF-FSYT---GAFVNWRSY 1570 H+ +I VM F Y+ + + F + + + YF F Y G F+ + Sbjct 2097 WQHLRDPLIGN-----VMPFF--YLAFLAIFGGVYVKAITLYFIFQYLNSLGVFLGLQQ- 2148 Query 1571 NYLVSGYFFCVTHIPLLGLVRIYNFLACLWFLRRFYNHVINGCKDTACLLCYKRNRLTRV 1630 S +F + + G + F+ + F HV GC +C+ C K RL RV Sbjct 2149 ----SIWFLQLVPFDVFGDEIVVFFIVTRVLM--FIKHVCLGCDKASCVACSKSARLKRV 2202 Query 1631 EASTVVCGSKRTFYIVANGGTSFCCRHNWNCVDCDTAGIGNTFICEEVANDLTTSLRRLV 1690 T+ G+ ++FY+ ANGG+ FC +HN+ C++CD+ G G TFI + +A ++ ++ V Sbjct 2203 PVQTIFQGTSKSFYVHANGGSKFCKKHNFFCLNCDSYGPGCTFINDVIATEVGNVVKLNV 2262 Query 1691 KPTDKSHYYVESVTVKDSVVQLHYSREGASCYERYPLCYFTNLD----KLKFKEVCKTPT 1746 +PT + ++ V + L+ + +Y N D K KE K + Sbjct 2263 QPTGPATILIDKVEFSNGFYYLY----SGDTFWKY------NFDITDSKYTCKEALKNCS 2312 Query 1747 GIPEHNFLIYDSSDRGQENLARSACVYYSQVLSKPMLLVDSNMVTTVGDSREIASKMLDS 1806 I + F++++ ++ N ++ACVY+SQ+L KP+ LVDS ++ ++ S + + + + Sbjct 2313 IITD--FIVFN-NNGSNVNQVKNACVYFSQMLCKPVKLVDSALLASL--SVDFGASLHSA 2367 Query 1807 YVNSFISLFGVNRDKLDKLVATARDCVKRGDDFQTVIKTFTDAARGPAGVESDVETSSIV 1866 +V+ + FG + + + +DC + G + DV + Sbjct 2368 FVSVLSNSFGKDLSSCNDM----QDC------------------KSTLGFD-DVPLDTFN 2404 Query 1867 DALQYAYKHDLQLTTEGFNNYVPSYIKPDS-VATADLGCLIDLNAASVNQTSIRNANGAC 1925 A+ A+++D+ LT FNN+ SY KP+ D+ + + A VN + + Sbjct 2405 AAVAEAHRYDVLLTDMSFNNFTTSYAKPEEKFPVHDIATCMRVGAKIVNHNVLVKDSIPV 2464 Query 1926 IWNSSDYMKLSDSLKRQIRIACRKCNIPFRLTTSRLRSADNILSVKFSATKLSG 1979 +W D++ LS+ ++ I + I F LT + R I +V + K +G Sbjct 2465 VWLVRDFIALSEETRKYIIRTTKVKGITFMLTFNDCRMHTTIPTVCIANKKGAG 2518 Range 2: 1316 to 1442 Score:84.0 bits(206), Expect:6e-16, Method:Compositional matrix adjust., Identities:51/130(39%), Positives:74/130(56%), Gaps:7/130(5%) Query 366 ILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDYVNFYGPLNVGDSTLLKGHGLATGIL 425 +VNAAN L HGGGIA AID + G++Q S+DY+ +GP+ VG +L+ GL + Sbjct 1316 FVVNAANEKLSHGGGIAKAIDVYTKGMLQKCSNDYIKAHGPIKVGRGVMLEALGLK--VF 1373 Query 426 HVVGPDARANQDIQLLKRCYKA-FNKYPLVVSPLISAGIFCVEPRVSLEYLLSVV---HT 481 +VVGP + +LL + YK+ F + ++PLIS GIF V SL L+ V H Sbjct 1374 NVVGP-RKGKHAPELLVKAYKSVFANSGVALTPLISVGIFSVPLEESLSAFLACVGDRHC 1432 Query 482 KTYVVVNSEK 491 K + + E+ Sbjct 1433 KCFCYGDKER 1442 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Papain-like protease; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p68; Contains: RecName: Full=Proofreading exoribonuclease; Short=ExoN; AltName: Full=Guanine-N7 methyltransferase; AltName: Full=Non-structural protein 14; Short=nsp14; AltName: Full=p58; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=Non-structural protein 15; Short=nsp15; AltName: Full=p39; Contains: RecName: Full=2'-O-methyl transferase; AltName: Full=Non-structural protein 16; Short=nsp16; AltName: Full=p35 [Avian infectious bronchitis virus (strain Beaudette CK)] Sequence ID: P0C6Y2.1 Length: 6629 Range 1: 1783 to 2265 Score:160 bits(405), Expect:4e-39, Method:Compositional matrix adjust., Identities:145/535(27%), Positives:234/535(43%), Gaps:75/535(14%) Query 1468 SLCDGMVEAYRNVSYDVNDFCSNRSALCNWCLIGQDSLT----RYSAFQMIQTHVTSYVI 1523 SLC G + Y S+DV +C++ +C CL +DSL YS Q+ + + ++ Sbjct 1783 SLC-GPYKDYGKDSFDVLRYCAD-DFICRVCLHDKDSLHLYKHAYSVEQVYKDAASGFIF 1840 Query 1524 NIDWVWFVMEFALAYVLYTSTFNVLLLVVSSQYFFS---YTGA-FVNW------RSYNYL 1573 N W W + F + +V + F ++ V S TG F++W +N++ Sbjct 1841 N--WNWLYLVFLILFVKPVAGFVIICYCVKYLVLNSTVLQTGVCFLDWFVQTVFSHFNFM 1898 Query 1574 VSGYFFCVTHIPLLGLVRIYNFLACLWFLRRFY--NHVINGCKDTACLLCYKRNRLTRVE 1631 +G++F W + Y H I CKD C +C + R R E Sbjct 1899 GAGFYF--------------------WLFYKIYIQVHHILYCKDVTCEVCKRVARSNRQE 1938 Query 1632 ASTVVCGSKRTFYIVANGGTSFCCRHNWNCVDCDTAGIGNTFICEEVANDLTTSLRRLVK 1691 S VV G K+ ++ N G +FC RHNW C +CD G NTF+ EVA +L+ L+R VK Sbjct 1939 VSVVVGGRKQIVHVYTNSGYNFCKRHNWYCRNCDDYGHQNTFMSPEVAGELSEKLKRHVK 1998 Query 1692 PTDKSHYYVESVTVKDSVVQLHY--SREGASCYERYPLCYFTNLDKLK----FKEVCKTP 1745 PT +++ V+ + D V L Y + G C F+ D LK KE K Sbjct 1999 PTAYAYHVVDEACLVDDFVNLKYKAATPGKDSASSAVKC-FSVTDFLKKAVFLKEALKCE 2057 Query 1746 TGIPEHNFLIYDSSDRGQENLARSACVYYSQVLSKPMLLVDSNMVTTVGDSREIASKMLD 1805 I F++ ++ A++A +YY+Q L KP+L++D + + ++ ++D Sbjct 2058 Q-ISNDGFIVCNTQSAHALEEAKNAAIYYAQYLCKPILILDQALYEQLV-VEPVSKSVID 2115 Query 1806 SYVNSFISLFGVNRDKLDKLVATARDCVKRGDDFQTVIKTFTDAARGPAGVESDVETSSI 1865 + S+ V+ L+ T RD + + D E Sbjct 2116 KVCSILSSIISVDTAALNYKAGTLRDAL--------------------LSITKDEEA--- 2152 Query 1866 VDALQYAYKHDLQLTTEGFNNYVPSY-IKPDSVATADLGCLIDLNAASVNQTSIRNANGA 1924 VD + + HD+ T +GF N +PSY I + D G LI+ + AS+ ++NA Sbjct 2153 VDMAIFCHNHDVDYTGDGFTNVIPSYGIDTGKLTPRDRGFLINAD-ASIANLRVKNA-PP 2210 Query 1925 CIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLTTSRLRSADNILSVKFSATKLSG 1979 +W S+ +KLSDS + + A K + F +T S + + K K +G Sbjct 2211 VVWKFSELIKLSDSCLKYLISATVKSGVRFFITKSGAKQVIACHTQKLLVEKKAG 2265 Range 2: 1149 to 1437 Score:72.0 bits(175), Expect:2e-12, Method:Compositional matrix adjust., Identities:81/317(26%), Positives:134/317(42%), Gaps:48/317(15%) Query 691 DSLEKCRTYLTSRAAQQKNVD----------VLVTIDGVNFRTVVLNNTTTYRVQLGSVF 740 ++ E C + + Q+++D + +T DGV +R++VL + Q G V+ Sbjct 1149 EAFEGCTIRVLLFSLSQEHIDYFDVTCKQKTIYLTEDGVKYRSIVLKPGDSLG-QFGQVY 1207 Query 741 YKGSDISDTIPTEKMSGEAVYLADNLSEAE--------KAVLSEVYGTADTAFLHRYYSL 792 K + V+ AD++ + E K++L E YG ++ L Sbjct 1208 AKN--------------KIVFTADDVEDKEILYVPTTDKSIL-EYYGLDAQKYV---IYL 1249 Query 793 LALVKKWKYTVHDGVKSLKLNSNNCYVNVTMLMLDMLKEIKFIVPALQAAYLKHKGGDST 852 L +KW D L+ NC+++ +++L K I+F L A+ K GGD T Sbjct 1250 QTLAQKWNVQYRDNFLILEWRDGNCWISSAIVLLQAAK-IRF-KGFLTEAWAKLLGGDPT 1307 Query 853 EFIALIMAYGDCTYGEPDDASRLLHTILSKAELT-TQAKMVWRQWCNVCGVQDTTTTGLK 911 +F+A A G+ DA+ LL + + T A + R CN CG++ GL+ Sbjct 1308 DFVAWCYASCTAKVGDFSDANWLLANLAEHFDADYTNAFLKKRVSCN-CGIKSYELRGLE 1366 Query 912 ACIY-VGMNSLDELHATHEECCQCGDVRKRQLVEHNAPWLLLSGLNEAKVMTPTSQSAGP 970 ACI V +L + C CG +++E + P+LLL + P + Sbjct 1367 ACIQPVRATNLLHFKTQYSNCPTCGANNTDEVIEASLPYLLLFATD-----GPATVDCDE 1421 Query 971 DYTAFNVFQGVETSVGH 987 D VF G T+ GH Sbjct 1422 DAVGTVVFVG-STNSGH 1437 Range 3: 982 to 1145 Score:50.1 bits(118), Expect:1e-05, Method:Compositional matrix adjust., Identities:57/176(32%), Positives:82/176(46%), Gaps:22/176(12%) Query 308 LKQETAVIVKNDSSAK-------PQRVKKPKAENPLKNFKHIVLNNDVTLVFGDAIAVAR 360 +KQE +VK K P +KPK +K V D+T+V A A+ Sbjct 982 IKQEPIQVVKPQREKKAKKFKVKPATCEKPK----FLEYKTCV--GDLTVVI--AKALDE 1033 Query 361 ATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDYVNFYGPLN-VGDSTLLKGHG 419 E CI VNAAN H+ HG G+A AI G +DYV +GP + + +KG Sbjct 1034 FKEFCI-VNAANEHMTHGSGVAKAIADFCGLDFVEYCEDYVKKHGPQQRLVTPSFVKG-- 1090 Query 420 LATGILHVVGPDARANQDIQLLKRCYKAFNKYPLV--VSPLISAGIFCVEPRVSLE 473 + +VVGP N + L YK +V V P++S GIF V+ ++S++ Sbjct 1091 -IQCVNNVVGPRHGDNNLHEKLVAAYKNVLVDGVVNYVVPVLSLGIFGVDFKMSID 1145 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Papain-like protease; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p68; Contains: RecName: Full=Proofreading exoribonuclease; Short=ExoN; AltName: Full=Guanine-N7 methyltransferase; AltName: Full=Non-structural protein 14; Short=nsp14; AltName: Full=p58; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=Non-structural protein 15; Short=nsp15; AltName: Full=p39; Contains: RecName: Full=2'-O-methyl transferase; AltName: Full=Non-structural protein 16; Short=nsp16; AltName: Full=p35 [Avian infectious bronchitis virus (strain Beaudette)] Sequence ID: P0C6Y1.1 Length: 6629 Range 1: 1783 to 2265 Score:160 bits(405), Expect:4e-39, Method:Compositional matrix adjust., Identities:145/535(27%), Positives:234/535(43%), Gaps:75/535(14%) Query 1468 SLCDGMVEAYRNVSYDVNDFCSNRSALCNWCLIGQDSLT----RYSAFQMIQTHVTSYVI 1523 SLC G + Y S+DV +C++ +C CL +DSL YS Q+ + + ++ Sbjct 1783 SLC-GPYKDYGKDSFDVLRYCAD-DFICRVCLHDKDSLHLYKHAYSVEQVYKDAASGFIF 1840 Query 1524 NIDWVWFVMEFALAYVLYTSTFNVLLLVVSSQYFFS---YTGA-FVNW------RSYNYL 1573 N W W + F + +V + F ++ V S TG F++W +N++ Sbjct 1841 N--WNWLYLVFLILFVKPVAGFVIICYCVKYLVLNSTVLQTGVCFLDWFVQTVFSHFNFM 1898 Query 1574 VSGYFFCVTHIPLLGLVRIYNFLACLWFLRRFY--NHVINGCKDTACLLCYKRNRLTRVE 1631 +G++F W + Y H I CKD C +C + R R E Sbjct 1899 GAGFYF--------------------WLFYKIYIQVHHILYCKDVTCEVCKRVARSNRQE 1938 Query 1632 ASTVVCGSKRTFYIVANGGTSFCCRHNWNCVDCDTAGIGNTFICEEVANDLTTSLRRLVK 1691 S VV G K+ ++ N G +FC RHNW C +CD G NTF+ EVA +L+ L+R VK Sbjct 1939 VSVVVGGRKQIVHVYTNSGYNFCKRHNWYCRNCDDYGHQNTFMSPEVAGELSEKLKRHVK 1998 Query 1692 PTDKSHYYVESVTVKDSVVQLHY--SREGASCYERYPLCYFTNLDKLK----FKEVCKTP 1745 PT +++ V+ + D V L Y + G C F+ D LK KE K Sbjct 1999 PTAYAYHVVDEACLVDDFVNLKYKAATPGKDSASSAVKC-FSVTDFLKKAVFLKEALKCE 2057 Query 1746 TGIPEHNFLIYDSSDRGQENLARSACVYYSQVLSKPMLLVDSNMVTTVGDSREIASKMLD 1805 I F++ ++ A++A +YY+Q L KP+L++D + + ++ ++D Sbjct 2058 Q-ISNDGFIVCNTQSAHALEEAKNAAIYYAQYLCKPILILDQALYEQLV-VEPVSKSVID 2115 Query 1806 SYVNSFISLFGVNRDKLDKLVATARDCVKRGDDFQTVIKTFTDAARGPAGVESDVETSSI 1865 + S+ V+ L+ T RD + + D E Sbjct 2116 KVCSILSSIISVDTAALNYKAGTLRDAL--------------------LSITKDEEA--- 2152 Query 1866 VDALQYAYKHDLQLTTEGFNNYVPSY-IKPDSVATADLGCLIDLNAASVNQTSIRNANGA 1924 VD + + HD+ T +GF N +PSY I + D G LI+ + AS+ ++NA Sbjct 2153 VDMAIFCHNHDVDYTGDGFTNVIPSYGIDTGKLTPRDRGFLINAD-ASIANLRVKNA-PP 2210 Query 1925 CIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLTTSRLRSADNILSVKFSATKLSG 1979 +W S+ +KLSDS + + A K + F +T S + + K K +G Sbjct 2211 VVWKFSELIKLSDSCLKYLISATVKSGVRFFITKSGAKQVIACHTQKLLVEKKAG 2265 Range 2: 1149 to 1437 Score:72.0 bits(175), Expect:2e-12, Method:Compositional matrix adjust., Identities:81/317(26%), Positives:134/317(42%), Gaps:48/317(15%) Query 691 DSLEKCRTYLTSRAAQQKNVD----------VLVTIDGVNFRTVVLNNTTTYRVQLGSVF 740 ++ E C + + Q+++D + +T DGV +R++VL + Q G V+ Sbjct 1149 EAFEGCTIRVLLFSLSQEHIDYFDVTCKQKTIYLTEDGVKYRSIVLKPGDSLG-QFGQVY 1207 Query 741 YKGSDISDTIPTEKMSGEAVYLADNLSEAE--------KAVLSEVYGTADTAFLHRYYSL 792 K + V+ AD++ + E K++L E YG ++ L Sbjct 1208 AKN--------------KIVFTADDVEDKEILYVPTTDKSIL-EYYGLDAQKYV---IYL 1249 Query 793 LALVKKWKYTVHDGVKSLKLNSNNCYVNVTMLMLDMLKEIKFIVPALQAAYLKHKGGDST 852 L +KW D L+ NC+++ +++L K I+F L A+ K GGD T Sbjct 1250 QTLAQKWNVQYRDNFLILEWRDGNCWISSAIVLLQAAK-IRF-KGFLTEAWAKLLGGDPT 1307 Query 853 EFIALIMAYGDCTYGEPDDASRLLHTILSKAELT-TQAKMVWRQWCNVCGVQDTTTTGLK 911 +F+A A G+ DA+ LL + + T A + R CN CG++ GL+ Sbjct 1308 DFVAWCYASCTAKVGDFSDANWLLANLAEHFDADYTNAFLKKRVSCN-CGIKSYELRGLE 1366 Query 912 ACIY-VGMNSLDELHATHEECCQCGDVRKRQLVEHNAPWLLLSGLNEAKVMTPTSQSAGP 970 ACI V +L + C CG +++E + P+LLL + P + Sbjct 1367 ACIQPVRATNLLHFKTQYSNCPTCGANNTDEVIEASLPYLLLFATD-----GPATVDCDE 1421 Query 971 DYTAFNVFQGVETSVGH 987 D VF G T+ GH Sbjct 1422 DAVGTVVFVG-STNSGH 1437 Range 3: 982 to 1145 Score:50.1 bits(118), Expect:1e-05, Method:Compositional matrix adjust., Identities:57/176(32%), Positives:82/176(46%), Gaps:22/176(12%) Query 308 LKQETAVIVKNDSSAK-------PQRVKKPKAENPLKNFKHIVLNNDVTLVFGDAIAVAR 360 +KQE +VK K P +KPK +K V D+T+V A A+ Sbjct 982 IKQEPIQVVKPQREKKAKKFKVKPATCEKPK----FLEYKTCV--GDLTVVI--AKALDE 1033 Query 361 ATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDYVNFYGPLN-VGDSTLLKGHG 419 E CI VNAAN H+ HG G+A AI G +DYV +GP + + +KG Sbjct 1034 FKEFCI-VNAANEHMTHGSGVAKAIADFCGLDFVEYCEDYVKKHGPQQRLVTPSFVKG-- 1090 Query 420 LATGILHVVGPDARANQDIQLLKRCYKAFNKYPLV--VSPLISAGIFCVEPRVSLE 473 + +VVGP N + L YK +V V P++S GIF V+ ++S++ Sbjct 1091 -IQCVNNVVGPRHGDNNLHEKLVAAYKNVLVDGVVNYVVPVLSLGIFGVDFKMSID 1145 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Human coronavirus NL63] Sequence ID: P0C6U6.1 Length: 4060 Range 1: 1998 to 2441 Score:154 bits(390), Expect:2e-37, Method:Compositional matrix adjust., Identities:125/492(25%), Positives:215/492(43%), Gaps:51/492(10%) Query 1469 LCDGMVEAYRNVSYDVNDFCSNRSALCNWCLIGQDSLTRYSAFQMIQTHVTSYVINIDWV 1528 LC +V Y +++ + +C N S +C CL ++ H+ ++ Sbjct 1998 LCGDIVSGYEKSTFNKDIYCGN-SMVCKMCLFSYQEFNDLDHTSLVWKHIRDPILISLQP 2056 Query 1529 WFVMEFALAYVLYTSTFNVLLLVVSSQYFFSYTGAFVNWRSYNYLVSGYFFCVTHIPLLG 1588 + ++ L + F +L V F S G+F+ + + + F V L Sbjct 2057 FVILVILLIFGNMYLRFGLLYFVAQ---FISTFGSFLGFHQKQWFLHFVPFDVLCNEFLA 2113 Query 1589 LVRIYNFLACLWFLRRFYNHVINGCKDTACLLCYKRNRLTRVEASTVVCGSKRTFYIVAN 1648 F+ C L F H+I GC + C+ C K RL RV T++ G ++FY+ AN Sbjct 2114 -----TFIVCKIVL--FVRHIIVGCNNADCVACSKSARLKRVPLQTIINGMHKSFYVNAN 2166 Query 1649 GGTSFCCRHNWNCVDCDTAGIGNTFICEEVANDLTTSLRRLVKPTDKSHYYVESVTVKDS 1708 GGT FC +HN+ CV+CD+ G GNTFI ++A +L ++ V+PT ++ ++ V + Sbjct 2167 GGTCFCNKHNFFCVNCDSFGPGNTFINGDIARELGNVVKTAVQPTAPAYVIIDKVDFVNG 2226 Query 1709 VVQLHYSREGASCYERYPLCYFTNLDKLKFKEVCKTPTGIPEHNFLIYDSSDRGQENLAR 1768 +L+ + RY + K KEV K + NF++Y++S + + Sbjct 2227 FYRLY----SGDTFWRYD--FDITESKYSCKEVLKNCNVL--ENFIVYNNSGSNITQI-K 2277 Query 1769 SACVYYSQVLSKPMLLVDSNMVTTVG-DSREIASK-MLDSYVNSFISLFGVNRDKLDKLV 1826 +ACVY+SQ+L +P+ LV+S +++T+ D + K +D NSF N Sbjct 2278 NACVYFSQLLCEPIKLVNSELLSTLSVDFNGVLHKAYVDVLCNSFFKELTAN-------- 2329 Query 1827 ATARDCVKRGDDFQTVIKTFTDAARGPAGVESDVETSSIVDALQYAYKHDLQLTTEGFNN 1886 A A + V V A+ A+++D+ L+ FNN Sbjct 2330 --------------------MSMAECKATLGLTVSDDDFVSAVANAHRYDVLLSDLSFNN 2369 Query 1887 YVPSYIKP-DSVATADLGCLIDLNAASVNQTSIRNANGACIWNSSDYMKLSDSLKRQIRI 1945 + SY KP D ++ D+ C + + VN + + +W D+ LS K+ + Sbjct 2370 FFISYAKPEDKLSVYDIACCMRAGSKVVNHNVLIKESIPIVWGVKDFNTLSQEGKKYLVK 2429 Query 1946 ACRKCNIPFRLT 1957 + + F LT Sbjct 2430 TTKAKGLTFLLT 2441 Range 2: 1258 to 1393 Score:70.5 bits(171), Expect:6e-12, Method:Compositional matrix adjust., Identities:50/141(35%), Positives:71/141(50%), Gaps:8/141(5%) Query 340 KHIVLNNDVTLVFGDAIAVARATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDD 399 K + +V GD + +VNAAN +L HGGG+A AID + G +Q+ S D Sbjct 1258 KPFAVYKNVKFYLGDISHLVNCVSFDFVVNAANENLLHGGGVARAIDILTEGQLQSLSKD 1317 Query 400 YVNFYGPLNVGDSTLLKGHGLATGILHVVGPDARANQDIQLLKRCYKAF---NKYPLVVS 456 Y++ GPL VG +L+ + +VVGP ++ LL Y + N PL+ Sbjct 1318 YISSNGPLKVGAGVMLECEKF--NVFNVVGPRTGKHEH-SLLVEAYNSILFENGIPLM-- 1372 Query 457 PLISAGIFCVEPRVSLEYLLS 477 PL+S GIF V SL+ L S Sbjct 1373 PLLSCGIFGVRIENSLKALFS 1393 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p41; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Human coronavirus NL63] Sequence ID: P0C6X5.1 Length: 6729 Range 1: 1998 to 2441 Score:154 bits(390), Expect:2e-37, Method:Compositional matrix adjust., Identities:125/492(25%), Positives:215/492(43%), Gaps:51/492(10%) Query 1469 LCDGMVEAYRNVSYDVNDFCSNRSALCNWCLIGQDSLTRYSAFQMIQTHVTSYVINIDWV 1528 LC +V Y +++ + +C N S +C CL ++ H+ ++ Sbjct 1998 LCGDIVSGYEKSTFNKDIYCGN-SMVCKMCLFSYQEFNDLDHTSLVWKHIRDPILISLQP 2056 Query 1529 WFVMEFALAYVLYTSTFNVLLLVVSSQYFFSYTGAFVNWRSYNYLVSGYFFCVTHIPLLG 1588 + ++ L + F +L V F S G+F+ + + + F V L Sbjct 2057 FVILVILLIFGNMYLRFGLLYFVAQ---FISTFGSFLGFHQKQWFLHFVPFDVLCNEFLA 2113 Query 1589 LVRIYNFLACLWFLRRFYNHVINGCKDTACLLCYKRNRLTRVEASTVVCGSKRTFYIVAN 1648 F+ C L F H+I GC + C+ C K RL RV T++ G ++FY+ AN Sbjct 2114 -----TFIVCKIVL--FVRHIIVGCNNADCVACSKSARLKRVPLQTIINGMHKSFYVNAN 2166 Query 1649 GGTSFCCRHNWNCVDCDTAGIGNTFICEEVANDLTTSLRRLVKPTDKSHYYVESVTVKDS 1708 GGT FC +HN+ CV+CD+ G GNTFI ++A +L ++ V+PT ++ ++ V + Sbjct 2167 GGTCFCNKHNFFCVNCDSFGPGNTFINGDIARELGNVVKTAVQPTAPAYVIIDKVDFVNG 2226 Query 1709 VVQLHYSREGASCYERYPLCYFTNLDKLKFKEVCKTPTGIPEHNFLIYDSSDRGQENLAR 1768 +L+ + RY + K KEV K + NF++Y++S + + Sbjct 2227 FYRLY----SGDTFWRYD--FDITESKYSCKEVLKNCNVL--ENFIVYNNSGSNITQI-K 2277 Query 1769 SACVYYSQVLSKPMLLVDSNMVTTVG-DSREIASK-MLDSYVNSFISLFGVNRDKLDKLV 1826 +ACVY+SQ+L +P+ LV+S +++T+ D + K +D NSF N Sbjct 2278 NACVYFSQLLCEPIKLVNSELLSTLSVDFNGVLHKAYVDVLCNSFFKELTAN-------- 2329 Query 1827 ATARDCVKRGDDFQTVIKTFTDAARGPAGVESDVETSSIVDALQYAYKHDLQLTTEGFNN 1886 A A + V V A+ A+++D+ L+ FNN Sbjct 2330 --------------------MSMAECKATLGLTVSDDDFVSAVANAHRYDVLLSDLSFNN 2369 Query 1887 YVPSYIKP-DSVATADLGCLIDLNAASVNQTSIRNANGACIWNSSDYMKLSDSLKRQIRI 1945 + SY KP D ++ D+ C + + VN + + +W D+ LS K+ + Sbjct 2370 FFISYAKPEDKLSVYDIACCMRAGSKVVNHNVLIKESIPIVWGVKDFNTLSQEGKKYLVK 2429 Query 1946 ACRKCNIPFRLT 1957 + + F LT Sbjct 2430 TTKAKGLTFLLT 2441 Range 2: 1258 to 1393 Score:70.9 bits(172), Expect:6e-12, Method:Compositional matrix adjust., Identities:50/141(35%), Positives:71/141(50%), Gaps:8/141(5%) Query 340 KHIVLNNDVTLVFGDAIAVARATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDD 399 K + +V GD + +VNAAN +L HGGG+A AID + G +Q+ S D Sbjct 1258 KPFAVYKNVKFYLGDISHLVNCVSFDFVVNAANENLLHGGGVARAIDILTEGQLQSLSKD 1317 Query 400 YVNFYGPLNVGDSTLLKGHGLATGILHVVGPDARANQDIQLLKRCYKAF---NKYPLVVS 456 Y++ GPL VG +L+ + +VVGP ++ LL Y + N PL+ Sbjct 1318 YISSNGPLKVGAGVMLECEKF--NVFNVVGPRTGKHEH-SLLVEAYNSILFENGIPLM-- 1372 Query 457 PLISAGIFCVEPRVSLEYLLS 477 PL+S GIF V SL+ L S Sbjct 1373 PLLSCGIFGVRIENSLKALFS 1393 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; Contains: RecName: Full=Non-structural protein 11; Short=nsp11; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Feline infectious peritonitis virus (strain 79-1146)] Sequence ID: Q98VG9.2 Length: 6709 Range 1: 1941 to 2407 Score:152 bits(385), Expect:8e-37, Method:Compositional matrix adjust., Identities:136/520(26%), Positives:240/520(46%), Gaps:63/520(12%) Query 1466 IHSL-CDGMVEAYRNVSYDVNDFCSNRSALCNWCLIGQDSLTRYSAFQMIQTHVT----S 1520 +H L C G V+AY N S+ ++ C N S LC CL D L + Q+ + + + Sbjct 1941 VHKLACSGSVQAYSNSSFVKSEVCGN-SILCKACLASYDELADFDHLQVSWDYKSDPLWN 1999 Query 1521 YVINIDWVWFVMEFALAYVLYTSTFNVLLLVVSSQY---FFSYTGAFVNWRSYNYLVSGY 1577 VI + + F+ F YV LL+ SQY + SY G +V + + ++V+ Sbjct 2000 RVIQLSYFIFLAVFGNNYV------RCLLMYFVSQYLNLWLSYFG-YVKYSWFLHVVN-- 2050 Query 1578 FFCVTHIPLLGLVRIYNFLACLWFLRRFYNHVINGCKDTACLLCYKRNRLTRVEASTVVC 1637 F ++ ++ +V LA H+ C + +C C K R TR+ VV Sbjct 2051 FESISVEFVIIVVVFKAVLA--------LKHIFLPCNNPSCKTCSKIARQTRIPIQVVVN 2102 Query 1638 GSKRTFYIVANGGTSFCCRHNWNCVDCDTAGIGNTFICEEVANDLTTSLRRLVKPTDKSH 1697 GS +T Y+ ANG C +HN+ C +CD+ G +TFIC+E+ DL+ S+++ V TD+S+ Sbjct 2103 GSMKTVYVHANGTGKLCKKHNFYCKNCDSYGFDHTFICDEIVRDLSNSIKQTVYATDRSY 2162 Query 1698 YYVESVTVKDSVVQLHYSREGASCYERYPLCYFTNLDKLKFKEVCKTPTGIPEHNFLIYD 1757 V V D + Y E + Y+ Y K +EV KT + + F++Y+ Sbjct 2163 QEVTKVECTDGFYRF-YVGEEFTAYD-----YDVKHKKYSSQEVLKTMFLLDD--FIVYN 2214 Query 1758 SSDRGQENLARSACVYYSQVLSKPMLLVDSNMVTTVGDSREIASKMLDSYVNSFISLFGV 1817 S ++ R+ CVY+SQ++ +P+ +V+S ++ + S + + ++ N + F V Sbjct 2215 PSGSSLASV-RNVCVYFSQLIGRPIKIVNSELLEDL--SVDFKGALFNAKKNVIKNSFNV 2271 Query 1818 NRDKLDKLVATARDCVKRGDDFQTVIKTFTDAARGPAGVESDVETSSIVDALQYAYKHDL 1877 + + L + C DV S+ A+ A++ + Sbjct 2272 DVSECKNLEECYKLC------------------------NLDVTFSTFEMAINNAHRFGI 2307 Query 1878 QLTTEGFNNYVPSYIKPDS--VATADLGCLIDLNAASVNQTSIRNANGACIWNSSDYMKL 1935 +T FNN+ PS IKP S V+ D+G + +A VN + + +W S D+ L Sbjct 2308 LITDRSFNNFWPSKIKPGSSGVSAMDIGKCMTFDAKIVNAKVLTQRGKSVVWLSQDFSTL 2367 Query 1936 SDSLKRQIRIACRKCNIPFRLTTSRLRSADNILSVKFSAT 1975 S + ++ + + + F LT + + S +++ +F+ + Sbjct 2368 SSTAQKVLVKTFVEEGVNFSLTFNAVGSDEDLPYERFTES 2407 Range 2: 1342 to 1490 Score:66.6 bits(161), Expect:1e-10, Method:Compositional matrix adjust., Identities:50/149(34%), Positives:76/149(51%), Gaps:4/149(2%) Query 348 VTLVFGDAIAVARATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDYVNFYGPL 407 V+ GD + E +LVNAAN L+H GG+A AID +GG + S +Y+ + Sbjct 1342 VSFYQGDLDVLINFLEPDVLVNAANGDLRHVGGVARAIDVFTGGKLTKRSKEYLKSSKAI 1401 Query 408 NVGDSTLLKGHGLATGILHVVGPDARANQDIQLLKRCYKAFNKYP-LVVSPLISAGIFCV 466 G++ L + +L+ VGP ++ L YKA K +++PLIS GIF V Sbjct 1402 APGNAVLFENVLEHLSVLNAVGPRNGDSRVEGKLCNVYKAIAKCDGKILTPLISVGIFKV 1461 Query 467 EPRVSLEYLLSVVHTK---TYVVVNSEKV 492 + VSL+ LL V + +V + E+V Sbjct 1462 KLEVSLQCLLKTVTDRDLNVFVYTDQERV 1490 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain 3880)] Sequence ID: P36327.3 Length: 2485 Range 1: 1335 to 1443 Score:49.7 bits(117), Expect:1e-05, Method:Compositional matrix adjust., Identities:42/124(34%), Positives:63/124(50%), Gaps:24/124(19%) Query 350 LVFGDAIAVARATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDYVNFYGPLNV 409 +V GD +A ATE +++NAAN+ + GGG+ A+ + ES D P+ V Sbjct 1335 VVRGD---IATATEG-VIINAANSKGQPGGGVCGALYKKF-----PESFD----LQPIEV 1381 Query 410 GDSTLLKGHGLATGILHVVGPDARANQDIQLLKRCYKAF---------NKYPLVVSPLIS 460 G + L+K G A I+H VGP+ +I+ K+ +A+ N Y V PL+S Sbjct 1382 GKARLVK--GAAKHIIHAVGPNFNKVSEIEGDKQLAEAYESIAKIVNDNNYKSVAIPLLS 1439 Query 461 AGIF 464 GIF Sbjct 1440 TGIF 1443 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Trinidad donkey)] Sequence ID: P27282.3 Length: 2493 Range 1: 1335 to 1443 Score:48.9 bits(115), Expect:2e-05, Method:Compositional matrix adjust., Identities:41/124(33%), Positives:63/124(50%), Gaps:24/124(19%) Query 350 LVFGDAIAVARATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDYVNFYGPLNV 409 +V GD +A ATE +++NAAN+ + GGG+ A+ + ES D P+ V Sbjct 1335 VVRGD---IATATEG-VIINAANSKGQPGGGVCGALYKKF-----PESFD----LQPIEV 1381 Query 410 GDSTLLKGHGLATGILHVVGPDARANQDIQLLKRCYKAF---------NKYPLVVSPLIS 460 G + L+K G A I+H VGP+ +++ K+ +A+ N Y V PL+S Sbjct 1382 GKARLVK--GAAKHIIHAVGPNFNKVSEVEGDKQLAEAYESIAKIVNDNNYKSVAIPLLS 1439 Query 461 AGIF 464 GIF Sbjct 1440 TGIF 1443 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain P676)] Sequence ID: P36328.2 Length: 2493 Range 1: 1335 to 1443 Score:48.9 bits(115), Expect:2e-05, Method:Compositional matrix adjust., Identities:41/124(33%), Positives:63/124(50%), Gaps:24/124(19%) Query 350 LVFGDAIAVARATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDYVNFYGPLNV 409 +V GD +A ATE +++NAAN+ + GGG+ A+ + ES D P+ V Sbjct 1335 VVRGD---IATATEG-VIINAANSKGQPGGGVCGALYKKF-----PESFD----LQPIEV 1381 Query 410 GDSTLLKGHGLATGILHVVGPDARANQDIQLLKRCYKAF---------NKYPLVVSPLIS 460 G + L+K G A I+H VGP+ +++ K+ +A+ N Y V PL+S Sbjct 1382 GKARLVK--GAAKHIIHAVGPNFNKVSEVEGDKQLAEAYESIAKIVNDNNYKSVAIPLLS 1439 Query 461 AGIF 464 GIF Sbjct 1440 TGIF 1443